BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026731
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C1CSS9|SEPF_STRZT Cell division protein SepF OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=sepF PE=3 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|P0CB77|SEPF_STRPN Cell division protein SepF OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=sepF PE=1 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|B5E714|SEPF_STRP4 Cell division protein SepF OS=Streptococcus pneumoniae serotype 19F
(strain G54) GN=sepF PE=3 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|C1CM03|SEPF_STRZP Cell division protein SepF OS=Streptococcus pneumoniae (strain
P1031) GN=sepF PE=3 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|C1CFN5|SEPF_STRZJ Cell division protein SepF OS=Streptococcus pneumoniae (strain JJA)
GN=sepF PE=3 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|Q8DNW1|SEPF_STRR6 Cell division protein SepF OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=sepF PE=3 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|B2IRR9|SEPF_STRPS Cell division protein SepF OS=Streptococcus pneumoniae (strain
CGSP14) GN=sepF PE=3 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|B8ZM59|SEPF_STRPJ Cell division protein SepF OS=Streptococcus pneumoniae (strain ATCC
700669 / Spain 23F-1) GN=sepF PE=3 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|C1C8Q3|SEPF_STRP7 Cell division protein SepF OS=Streptococcus pneumoniae (strain
70585) GN=sepF PE=3 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|Q04JA5|SEPF_STRP2 Cell division protein SepF OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=sepF PE=3 SV=1
Length = 179
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|Q9VGG5|CAD87_DROME Cadherin-87A OS=Drosophila melanogaster GN=Cad87A PE=1 SV=4
Length = 1975
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 29/217 (13%)
Query: 40 FVVYRTTYYQYKQTEMEAKF--SPFDISKGSRFSSGRLKSLPRGIVQARSDLEL--RPL- 94
F++ + Y++ T+ SPF IS+ R S+ + + Q R +LE+ R L
Sbjct: 1590 FMIVASNLYKFGATKSTGSIVPSPFAISQDGRISANTIMAEYN---QDRFELEIVARELE 1646
Query: 95 --WSTSSSRKKFGVYSNRNLLAI-----PAGIKQ-KDNVDAIVRKFLPENFTV--ILFHY 144
S++S++ V+ L+ + P + Q ++ + A +R V I FH
Sbjct: 1647 QPQSSASTKVNIWVFDGTQLVRVILSRPPEEVYQEQEEIIAELRNATQHRIIVDEIRFHL 1706
Query: 145 DGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPR 204
D + R +DW + H A QT+ + D+ NYDY+ + +EN P
Sbjct: 1707 D-SIGRIR-MDWCDLYFH-AVDPQTQQIAPVDEILKDIDRNYDYLKDYYAGFAIENVVPA 1763
Query: 205 RYC--RRAYSILVVSLKYMYLFFFFGV------CLCM 233
+ + + V L + + F GV C C+
Sbjct: 1764 YIAIVQDEFDLAVAGLVALVIVLFVGVISFIVLCCCL 1800
>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
discoideum GN=psmD2 PE=1 SV=1
Length = 893
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 163 IAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLGVENFDPRRYCRRAY 211
+ A+ TKWWF R L V++ + LWD D G+ D Y + +
Sbjct: 393 MTAEEDTKWWFKNRELGILSTVASTGMVVLWDIDGGLTKIDKFLYSQEKH 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,803,317
Number of Sequences: 539616
Number of extensions: 3500801
Number of successful extensions: 8309
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8308
Number of HSP's gapped (non-prelim): 14
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)