Query 026731
Match_columns 234
No_of_seqs 101 out of 120
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 11:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 2.2E-74 4.8E-79 520.3 11.5 149 67-219 2-151 (294)
2 PF12996 DUF3880: DUF based on 71.5 2 4.4E-05 31.8 1.0 16 180-195 13-28 (79)
3 PF14538 Raptor_N: Raptor N-te 60.8 5.4 0.00012 33.6 1.7 47 138-196 91-145 (154)
4 PRK05325 hypothetical protein; 45.4 13 0.00029 36.1 1.9 28 123-152 296-325 (401)
5 PF04285 DUF444: Protein of un 41.6 17 0.00037 35.6 2.0 29 123-153 320-350 (421)
6 PF15018 InaF-motif: TRP-inter 39.4 11 0.00024 25.9 0.2 8 188-195 28-35 (38)
7 TIGR02877 spore_yhbH sporulati 37.9 23 0.00049 34.5 2.1 28 124-153 277-306 (371)
8 PF13778 DUF4174: Domain of un 31.5 34 0.00074 27.2 1.9 39 122-160 63-103 (118)
9 KOG1517 Guanine nucleotide bin 29.2 26 0.00057 38.8 1.2 44 138-196 187-241 (1387)
10 PF12431 CitT: Transcriptional 29.0 37 0.00079 21.8 1.4 7 76-82 21-27 (30)
11 PF12849 PBP_like_2: PBP super 27.2 37 0.00079 28.9 1.5 25 144-168 121-146 (281)
12 PF06679 DUF1180: Protein of u 27.1 1.3E+02 0.0028 26.2 4.8 27 23-49 94-120 (163)
13 PF09665 RE_Alw26IDE: Type II 25.6 39 0.00084 34.3 1.5 29 174-203 361-393 (511)
14 PF07172 GRP: Glycine rich pro 25.2 1.1E+02 0.0024 24.2 3.7 13 26-38 4-16 (95)
15 KOG2431 1, 2-alpha-mannosidase 24.0 93 0.002 31.7 3.8 100 20-132 5-106 (546)
16 PF15361 RIC3: Resistance to i 24.0 89 0.0019 26.5 3.2 26 24-50 81-106 (152)
17 PF11057 Cortexin: Cortexin of 23.8 1E+02 0.0022 24.5 3.2 24 27-50 30-53 (81)
18 PRK05637 anthranilate synthase 21.9 90 0.002 27.0 2.9 49 135-184 136-190 (208)
19 TIGR00975 3a0107s03 phosphate 21.2 65 0.0014 29.2 2.0 24 145-168 105-137 (314)
20 PF09776 Mitoc_L55: Mitochondr 21.0 54 0.0012 27.3 1.3 15 198-212 102-116 (116)
21 PF09162 Tap-RNA_bind: Tap, RN 21.0 99 0.0022 24.4 2.7 36 111-147 8-45 (88)
22 PF07745 Glyco_hydro_53: Glyco 20.2 53 0.0011 31.1 1.2 41 88-144 39-80 (332)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=2.2e-74 Score=520.28 Aligned_cols=149 Identities=55% Similarity=0.995 Sum_probs=144.8
Q ss_pred cccCCCCCcCCCCCcceecCCccceecCCCCCCcCcccCCCCCceEEEEeecccccccHHHHHhhhCCCCeEEEEEEeeC
Q 026731 67 GSRFSSGRLKSLPRGIVQARSDLELRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQKDNVDAIVRKFLPENFTVILFHYDG 146 (234)
Q Consensus 67 ~~~~~p~g~e~LP~GIV~~~Sdl~lr~Lwg~p~~~~~~~~~~~k~Llam~VGikQK~~Vd~~V~KF~~~nF~vmLFHYDG 146 (234)
..+++|+|+|+||||||+++||||||||||+|+++. +.++|||||||||+|||++||++|+|| ++||+||||||||
T Consensus 2 ~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~---~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg 77 (294)
T PF05212_consen 2 WVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL---PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDG 77 (294)
T ss_pred CcCCCCCccccCCCCccccCCCceeeecCCCccccc---cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecC
Confidence 467999999999999999999999999999999887 468899999999999999999999999 9999999999999
Q ss_pred ccccccccccCCceeEEEEeeccceeeccccCCcccccccceEEEEecccccccCChhhhHHHhhh-hheehhh
Q 026731 147 DVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYCRRAYS-ILVVSLK 219 (234)
Q Consensus 147 ~vd~W~dleWS~~aIHVsa~~QTKWWfAKRFLHPdiVa~YdYIFlWDEDLgVe~Fd~~rYl~IVk~-~l~~s~~ 219 (234)
+||+|+|||||++||||+++|||||||||||||||||++||||||||||||||||||+||++||++ .|+|||-
T Consensus 78 ~vd~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQP 151 (294)
T PF05212_consen 78 RVDEWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQP 151 (294)
T ss_pred CcCchhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8999984
No 2
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=71.48 E-value=2 Score=31.76 Aligned_cols=16 Identities=38% Similarity=0.866 Sum_probs=13.6
Q ss_pred cccccccceEEEEecc
Q 026731 180 PDVVSNYDYIFLWDED 195 (234)
Q Consensus 180 PdiVa~YdYIFlWDED 195 (234)
..+...|||||+||++
T Consensus 13 ~~i~~~~~~iFt~D~~ 28 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS 28 (79)
T ss_pred hhhCCCCCEEEEECHH
Confidence 3678899999999975
No 3
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=60.76 E-value=5.4 Score=33.61 Aligned_cols=47 Identities=32% Similarity=0.624 Sum_probs=30.3
Q ss_pred EEEEEEeeCccccccccccCCceeEEEEeeccceeeccccCCcccccccc--------eEEEEeccc
Q 026731 138 TVILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYD--------YIFLWDEDL 196 (234)
Q Consensus 138 ~vmLFHYDG~vd~W~dleWS~~aIHVsa~~QTKWWfAKRFLHPdiVa~Yd--------YIFlWDEDL 196 (234)
.=+||||-|. .++. -..+..=|-|.|.+-.-.-+.-|| =||+||+|-
T Consensus 91 ~RvLFHYnGh-----GvP~-------Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~DC~~ 145 (154)
T PF14538_consen 91 ERVLFHYNGH-----GVPR-------PTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFDCSN 145 (154)
T ss_pred ceEEEEECCC-----CCCC-------CCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEECCc
Confidence 6799999993 2221 122234477888876655566665 489999873
No 4
>PRK05325 hypothetical protein; Provisional
Probab=45.43 E-value=13 Score=36.14 Aligned_cols=28 Identities=21% Similarity=0.621 Sum_probs=23.9
Q ss_pred ccHHHHHhh-hCCCCeEEEEEEe-eCcccccc
Q 026731 123 DNVDAIVRK-FLPENFTVILFHY-DGDVNAWR 152 (234)
Q Consensus 123 ~~Vd~~V~K-F~~~nF~vmLFHY-DG~vd~W~ 152 (234)
+.++.||++ |+++++.|..||. || |.|.
T Consensus 296 ~l~~eIi~~rYpp~~wNIY~f~aSDG--DNw~ 325 (401)
T PRK05325 296 KLALEIIEERYPPAEWNIYAFQASDG--DNWS 325 (401)
T ss_pred HHHHHHHHhhCCHhHCeeEEEEcccC--CCcC
Confidence 456788885 9999999999996 88 8887
No 5
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=41.59 E-value=17 Score=35.62 Aligned_cols=29 Identities=24% Similarity=0.736 Sum_probs=24.0
Q ss_pred ccHHHHHhh-hCCCCeEEEEEEe-eCccccccc
Q 026731 123 DNVDAIVRK-FLPENFTVILFHY-DGDVNAWRG 153 (234)
Q Consensus 123 ~~Vd~~V~K-F~~~nF~vmLFHY-DG~vd~W~d 153 (234)
+.++.||++ |+++++.|..||. || |.|.+
T Consensus 320 ~l~~~ii~erypp~~wNiY~~~~SDG--DN~~~ 350 (421)
T PF04285_consen 320 ELALEIIEERYPPSDWNIYVFHASDG--DNWSS 350 (421)
T ss_pred HHHHHHHHhhCChhhceeeeEEcccC--ccccC
Confidence 346778885 9999999999996 88 88864
No 6
>PF15018 InaF-motif: TRP-interacting helix
Probab=39.36 E-value=11 Score=25.94 Aligned_cols=8 Identities=75% Similarity=1.825 Sum_probs=5.5
Q ss_pred eEEEEecc
Q 026731 188 YIFLWDED 195 (234)
Q Consensus 188 YIFlWDED 195 (234)
|+|+||.+
T Consensus 28 Y~f~W~p~ 35 (38)
T PF15018_consen 28 YIFFWDPD 35 (38)
T ss_pred HheeeCCC
Confidence 67777765
No 7
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=37.93 E-value=23 Score=34.48 Aligned_cols=28 Identities=21% Similarity=0.643 Sum_probs=23.1
Q ss_pred cHHHHHh-hhCCCCeEEEEEEe-eCccccccc
Q 026731 124 NVDAIVR-KFLPENFTVILFHY-DGDVNAWRG 153 (234)
Q Consensus 124 ~Vd~~V~-KF~~~nF~vmLFHY-DG~vd~W~d 153 (234)
..+.||+ +|+++++.|..||. || |.|.+
T Consensus 277 l~~eII~~rYpp~~wNIY~f~aSDG--DNw~~ 306 (371)
T TIGR02877 277 KALEIIDERYNPARYNIYAFHFSDG--DNLTS 306 (371)
T ss_pred HHHHHHHhhCChhhCeeEEEEcccC--CCccC
Confidence 4566776 79999999999996 88 88873
No 8
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=31.54 E-value=34 Score=27.17 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=31.7
Q ss_pred cccHHHHHhhhC--CCCeEEEEEEeeCccccccccccCCce
Q 026731 122 KDNVDAIVRKFL--PENFTVILFHYDGDVNAWRGLDWSNKA 160 (234)
Q Consensus 122 K~~Vd~~V~KF~--~~nF~vmLFHYDG~vd~W~dleWS~~a 160 (234)
...+..+-++|. +++|+++|--.||.|-.+..-+|+-++
T Consensus 63 ~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~ 103 (118)
T PF13778_consen 63 PEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEE 103 (118)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHH
Confidence 355778888887 789999999999999888777776544
No 9
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.16 E-value=26 Score=38.83 Aligned_cols=44 Identities=34% Similarity=0.613 Sum_probs=29.6
Q ss_pred EEEEEEeeCccccccccccCCceeEEE---EeeccceeeccccCCcccccccc--------eEEEEeccc
Q 026731 138 TVILFHYDGDVNAWRGLDWSNKAIHIA---AQNQTKWWFAKRFLHPDVVSNYD--------YIFLWDEDL 196 (234)
Q Consensus 138 ~vmLFHYDG~vd~W~dleWS~~aIHVs---a~~QTKWWfAKRFLHPdiVa~Yd--------YIFlWDEDL 196 (234)
.=+||||.| |=+ ..|.-=|=|.|.|--===++.|| =|++|||.-
T Consensus 187 eRvLFHYNG---------------HGVPkPT~nGEIWVFNK~fTQYIPlsi~dLqsWl~aP~IyVydcss 241 (1387)
T KOG1517|consen 187 ERVLFHYNG---------------HGVPKPTANGEIWVFNKSFTQYIPLSIFDLQSWLGAPTIYVYDCSS 241 (1387)
T ss_pred ceEEEEecC---------------CCCCCCCCCCcEEEEecCcceeecccHHHHHhhhcCCeEEEEeccc
Confidence 458999999 433 33455699999995433344444 589999864
No 10
>PF12431 CitT: Transcriptional regulator
Probab=29.01 E-value=37 Score=21.75 Aligned_cols=7 Identities=57% Similarity=1.232 Sum_probs=6.2
Q ss_pred CCCCCcc
Q 026731 76 KSLPRGI 82 (234)
Q Consensus 76 e~LP~GI 82 (234)
++||.||
T Consensus 21 ~~LPKGI 27 (30)
T PF12431_consen 21 ERLPKGI 27 (30)
T ss_pred cCCCCCc
Confidence 7799998
No 11
>PF12849 PBP_like_2: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.; PDB: 1QUL_A 1OIB_A 1A54_A 1IXH_A 1A40_A 1QUJ_A 1A55_A 1IXI_A 2ABH_A 1QUK_A ....
Probab=27.15 E-value=37 Score=28.93 Aligned_cols=25 Identities=16% Similarity=0.662 Sum_probs=18.6
Q ss_pred eeCcccccccc-ccCCceeEEEEeec
Q 026731 144 YDGDVNAWRGL-DWSNKAIHIAAQNQ 168 (234)
Q Consensus 144 YDG~vd~W~dl-eWS~~aIHVsa~~Q 168 (234)
|.|.++.|+|+ .|.++.|++..+..
T Consensus 121 ~~G~It~W~~~~~~~~~~I~~~~r~~ 146 (281)
T PF12849_consen 121 FSGEITNWSDLGGGPDRPIKVVGRSD 146 (281)
T ss_dssp HCTS--BGGGTTTCHSSB-EEEEESS
T ss_pred HhhhhhcccccccCCCCceEEEeCCC
Confidence 35789999999 89999999998764
No 12
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=27.09 E-value=1.3e+02 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=17.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhhhh
Q 026731 23 VKMKQLQFMAIMCTVMLFVVYRTTYYQ 49 (234)
Q Consensus 23 ~~~k~lp~~allc~v~~F~v~~~~~~q 49 (234)
.+-.+..++++.++++++||.|.+.-.
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555567777777777888766443
No 13
>PF09665 RE_Alw26IDE: Type II restriction endonuclease (RE_Alw26IDE); InterPro: IPR014328 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family [], whose recognition sequences are 5'-GTCTC-3' (Alw26I), 5'-GGTCTC-3' (Eco31I) and 5'-CGTCTC-3' (Esp3I).
Probab=25.62 E-value=39 Score=34.30 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=22.0
Q ss_pred ccccCCcccccccceEE--EEecc--cccccCCh
Q 026731 174 AKRFLHPDVVSNYDYIF--LWDED--LGVENFDP 203 (234)
Q Consensus 174 AKRFLHPdiVa~YdYIF--lWDED--LgVe~Fd~ 203 (234)
---||||.. |.|+|.| +|-++ +...++.|
T Consensus 361 L~t~L~~~Y-a~y~y~Fe~~~~~~~~~~~~~i~~ 393 (511)
T PF09665_consen 361 LATFLKPEY-ANYDYTFEGLNISNHLTQYKSIYK 393 (511)
T ss_pred HHHHhchhh-hhccceeccccccccccccccccc
Confidence 346899998 9999999 66666 55566666
No 14
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.20 E-value=1.1e+02 Score=24.15 Aligned_cols=13 Identities=8% Similarity=0.419 Sum_probs=5.4
Q ss_pred hhhhHHHHHHHHH
Q 026731 26 KQLQFMAIMCTVM 38 (234)
Q Consensus 26 k~lp~~allc~v~ 38 (234)
|.+.+++|+-+++
T Consensus 4 K~~llL~l~LA~l 16 (95)
T PF07172_consen 4 KAFLLLGLLLAAL 16 (95)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444443333
No 15
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=23.96 E-value=93 Score=31.71 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=47.3
Q ss_pred cccccchhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCccccccccCCCCCcCCCCCcceecCCccceecCCCCCC
Q 026731 20 KFGVKMKQLQFMAIMCTVMLFVVYRTTYYQYKQTEMEAKFSPFDISKGSRFSSGRLKSLPRGIVQARSDLELRPLWSTSS 99 (234)
Q Consensus 20 ~s~~~~k~lp~~allc~v~~F~v~~~~~~q~~~~~i~~~~~~~~~~~~~~~~p~g~e~LP~GIV~~~Sdl~lr~Lwg~p~ 99 (234)
+||.|--.+.+++.+|+.++..++...+-- ++ --.|....++-....+++|.|||++-+..+.-+...- +.
T Consensus 5 r~~~r~w~ilf~~~~~~~v~l~~~~~~~~p----~~--~~~~~~~~~t~~~~~~sa~~l~p~~~~~~~~~~~~~p---~~ 75 (546)
T KOG2431|consen 5 RSCRRKWFILFILAFLLFVLLLLYINPANP----AE--LPNPQSGQKTKRGGQRSAENLPPDLPQQSATDEQEAP---KE 75 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCh----hh--cCCccccchhhhhcccCcccCCCCcchhhchhhccCC---cc
Confidence 444444445677777777655555441110 00 0011111122223456788889988877776555432 11
Q ss_pred cCcccCCCCCceEEEEe--ecccccccHHHHHhhh
Q 026731 100 SRKKFGVYSNRNLLAIP--AGIKQKDNVDAIVRKF 132 (234)
Q Consensus 100 ~~~~~~~~~~k~Llam~--VGikQK~~Vd~~V~KF 132 (234)
.+.+.... ...-| .+-.||+.|++...-|
T Consensus 76 ~~~~~~~i----~~~~Ptg~nerq~avv~aF~haW 106 (546)
T KOG2431|consen 76 GDPNRTVI----SFRGPTGLNERQKAVVDAFLHAW 106 (546)
T ss_pred CCCCCcce----eecCCCchhHHHHHHHHHHHHHH
Confidence 22211100 00012 3566777777776666
No 16
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=23.96 E-value=89 Score=26.49 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=16.8
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhhhh
Q 026731 24 KMKQLQFMAIMCTVMLFVVYRTTYYQY 50 (234)
Q Consensus 24 ~~k~lp~~allc~v~~F~v~~~~~~q~ 50 (234)
.|-++..+=-+++++ |++|.-++..-
T Consensus 81 ~~~~imPlYtiGI~~-f~lY~l~Ki~~ 106 (152)
T PF15361_consen 81 LMGQIMPLYTIGIVL-FILYTLFKIKK 106 (152)
T ss_pred hhhhHhHHHHHHHHH-HHHHHHHHHHh
Confidence 455555555555555 99999888663
No 17
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=23.81 E-value=1e+02 Score=24.52 Aligned_cols=24 Identities=13% Similarity=0.400 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhh
Q 026731 27 QLQFMAIMCTVMLFVVYRTTYYQY 50 (234)
Q Consensus 27 ~lp~~allc~v~~F~v~~~~~~q~ 50 (234)
.+-+..++|+.+++++.|.+++-+
T Consensus 30 ~faFV~~L~~fL~~liVRCfrIll 53 (81)
T PF11057_consen 30 AFAFVGLLCLFLGLLIVRCFRILL 53 (81)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHc
Confidence 356788999999999999998875
No 18
>PRK05637 anthranilate synthase component II; Provisional
Probab=21.87 E-value=90 Score=27.02 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=33.3
Q ss_pred CCeEEEEEEeeCcc---ccccccccCCc---eeEEEEeeccceeeccccCCccccc
Q 026731 135 ENFTVILFHYDGDV---NAWRGLDWSNK---AIHIAAQNQTKWWFAKRFLHPDVVS 184 (234)
Q Consensus 135 ~nF~vmLFHYDG~v---d~W~dleWS~~---aIHVsa~~QTKWWfAKRFLHPdiVa 184 (234)
+.+.|.-+|-|..+ ++..-+.||+. .+-.++.+..+..|+=.| ||+++.
T Consensus 136 ~~~~V~~~H~~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQf-HPE~~~ 190 (208)
T PRK05637 136 RKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQF-HPESVL 190 (208)
T ss_pred CceEEEEechhhhhcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEe-CCccCc
Confidence 45888899998764 34455667654 244455677788888888 888763
No 19
>TIGR00975 3a0107s03 phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins.
Probab=21.22 E-value=65 Score=29.22 Aligned_cols=24 Identities=17% Similarity=0.508 Sum_probs=21.5
Q ss_pred eCccccccc---------cccCCceeEEEEeec
Q 026731 145 DGDVNAWRG---------LDWSNKAIHIAAQNQ 168 (234)
Q Consensus 145 DG~vd~W~d---------leWS~~aIHVsa~~Q 168 (234)
.|+++.|+| +.|.+..|++..+..
T Consensus 105 ~G~It~W~d~~i~~~np~~~~p~~~I~vv~R~~ 137 (314)
T TIGR00975 105 LGKIKTWNDPAIAALNPGVKLPGTAITVVHRSD 137 (314)
T ss_pred CCCCcccCchhhhhcCCCCCCCCCceEEEeCCC
Confidence 699999999 889999999987764
No 20
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=21.01 E-value=54 Score=27.33 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.7
Q ss_pred cccCChhhhHHHhhh
Q 026731 198 VENFDPRRYCRRAYS 212 (234)
Q Consensus 198 Ve~Fd~~rYl~IVk~ 212 (234)
-|+||+++|+...+|
T Consensus 102 eD~Fd~~~Y~~fwkK 116 (116)
T PF09776_consen 102 EDDFDAEKYKKFWKK 116 (116)
T ss_pred cccCCHHHHHHHhhC
Confidence 579999999987764
No 21
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=20.95 E-value=99 Score=24.44 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=20.5
Q ss_pred eEEEEeecccc-cc-cHHHHHhhhCCCCeEEEEEEeeCc
Q 026731 111 NLLAIPAGIKQ-KD-NVDAIVRKFLPENFTVILFHYDGD 147 (234)
Q Consensus 111 ~Llam~VGikQ-K~-~Vd~~V~KF~~~nF~vmLFHYDG~ 147 (234)
+-++++-|.|- |+ .++. +|.-.+..|+=+.||||++
T Consensus 8 fKVtIp~G~KYdK~wLl~~-iq~~c~v~F~Pv~fh~~~~ 45 (88)
T PF09162_consen 8 FKVTIPYGKKYDKDWLLNS-IQSHCSVPFTPVDFHYEKN 45 (88)
T ss_dssp EEEEETTGGGS-HHHHHHH-HHHHSSS----EEEEEETT
T ss_pred EEEEecCCcccCHHHHHHH-HHHHCCCCeeeeeeeeeCC
Confidence 45566666542 22 2555 5666678999999999995
No 22
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.15 E-value=53 Score=31.07 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=29.4
Q ss_pred ccceecCCCCCCcCcccCCCCCceEEEEeecccccccHHHHHhhhCCCCeEEEE-EEe
Q 026731 88 DLELRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQKDNVDAIVRKFLPENFTVIL-FHY 144 (234)
Q Consensus 88 dl~lr~Lwg~p~~~~~~~~~~~k~Llam~VGikQK~~Vd~~V~KF~~~nF~vmL-FHY 144 (234)
+.-.-|+|-+|.. -|....+.|-++.|+--...+.||| |||
T Consensus 39 N~vRlRvwv~P~~----------------~g~~~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 39 NAVRLRVWVNPYD----------------GGYNDLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp -EEEEEE-SS-TT----------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CeEEEEeccCCcc----------------cccCCHHHHHHHHHHHHHCCCeEEEeecc
Confidence 3334488988765 5888899999999998778899998 999
Done!