Query 026731
Match_columns 234
No_of_seqs 101 out of 120
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 20:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sd4_A PHD finger protein 20; 26.4 34 0.0012 23.8 2.0 23 140-162 43-66 (69)
2 4dix_A Plectin-related protein 24.2 71 0.0024 28.3 4.0 44 124-175 106-149 (230)
3 2nrg_A Intrinsic membrane prot 22.6 1.1E+02 0.0039 23.2 4.4 13 70-82 63-75 (82)
4 1c1y_B Proto-onkogene serine/t 22.5 16 0.00056 27.3 -0.2 24 174-197 33-65 (77)
5 3t91_A Stage II sporulation pr 22.0 68 0.0023 25.5 3.3 27 134-160 209-235 (242)
6 2eqm_A PHD finger protein 20-l 21.7 45 0.0015 24.7 2.0 23 140-162 50-73 (88)
7 3shw_A Tight junction protein 17.0 1.2E+02 0.004 28.6 4.1 53 123-177 85-142 (468)
8 3tsz_A Tight junction protein 15.2 1.2E+02 0.004 27.3 3.5 42 134-177 104-150 (391)
9 1wxm_A A-RAF proto-oncogene se 15.1 47 0.0016 25.3 0.8 26 173-198 38-69 (86)
10 1jdm_A Sarcolipin; helix, memb 14.6 95 0.0033 19.8 2.0 18 30-47 13-30 (31)
No 1
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=26.43 E-value=34 Score=23.85 Aligned_cols=23 Identities=13% Similarity=0.434 Sum_probs=14.0
Q ss_pred EEEEeeCccccccc-cccCCceeE
Q 026731 140 ILFHYDGDVNAWRG-LDWSNKAIH 162 (234)
Q Consensus 140 mLFHYDG~vd~W~d-leWS~~aIH 162 (234)
++.||||--+.|++ .++++.-||
T Consensus 43 ~~VhfdGw~~~~D~W~~~dS~~i~ 66 (69)
T 3sd4_A 43 VLIHFKRWNHRYDEWFCWDSPYLR 66 (69)
T ss_dssp EEEEETTSCGGGCEEEETTCTTEE
T ss_pred EEEEeCCCCCCCCEEEcCCCCCee
Confidence 59999986555554 344444444
No 2
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=24.22 E-value=71 Score=28.27 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=35.0
Q ss_pred cHHHHHhhhCCCCeEEEEEEeeCccccccccccCCceeEEEEeeccceeecc
Q 026731 124 NVDAIVRKFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAK 175 (234)
Q Consensus 124 ~Vd~~V~KF~~~nF~vmLFHYDG~vd~W~dleWS~~aIHVsa~~QTKWWfAK 175 (234)
.|+++++|= ..+|.|++..+.| -+|.+.+|||.-+.-+..=+.|
T Consensus 106 yVEaL~rk~-~tEFNVvv~q~nG-------~d~~s~sihvl~vgk~RiKL~k 149 (230)
T 4dix_A 106 YVEALVRKH-DVDFNVVVTQMSG-------EDHTSESIHLFHVGKMRIKLCK 149 (230)
T ss_dssp HHHHHHTTS-EEEEEEEEEEETT-------EECCCCCEEEEEEESSEEEEEE
T ss_pred HHHHHhhcC-CCcEEEEEEEEcC-------ccCccceEEEEEeccEEEEEec
Confidence 499999997 6789999999988 4678889999977665554443
No 3
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=22.62 E-value=1.1e+02 Score=23.19 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=8.5
Q ss_pred CCCCCcCCCCCcc
Q 026731 70 FSSGRLKSLPRGI 82 (234)
Q Consensus 70 ~~p~g~e~LP~GI 82 (234)
..|..+.+|-.||
T Consensus 63 P~P~~~~~~~~~~ 75 (82)
T 2nrg_A 63 PAPNITGALETGI 75 (82)
T ss_dssp SSSSSCSSSSSSC
T ss_pred CCCccchhHHHHH
Confidence 3466677777766
No 4
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=22.51 E-value=16 Score=27.29 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=20.8
Q ss_pred ccccCCccccccc---------ceEEEEecccc
Q 026731 174 AKRFLHPDVVSNY---------DYIFLWDEDLG 197 (234)
Q Consensus 174 AKRFLHPdiVa~Y---------dYIFlWDEDLg 197 (234)
-+|-|.|+..+-| ++..=||+|.+
T Consensus 33 k~R~L~pe~C~V~~~~~~~~~~~~~i~WdtD~~ 65 (77)
T 1c1y_B 33 KVRGLQPECCAVFRLLHEHKGKKARLDWNTDAA 65 (77)
T ss_dssp HTTTCCGGGEEEEEEEGGGSSEEEEECTTSBGG
T ss_pred HHcCCCHHHeEEEEeccCCCCCccccchhHhhh
Confidence 4799999999888 47889999987
No 5
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A*
Probab=21.98 E-value=68 Score=25.48 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=17.2
Q ss_pred CCCeEEEEEEeeCccccccccccCCce
Q 026731 134 PENFTVILFHYDGDVNAWRGLDWSNKA 160 (234)
Q Consensus 134 ~~nF~vmLFHYDG~vd~W~dleWS~~a 160 (234)
.||.|++++.+.+...+|..++|.+..
T Consensus 209 ~DDiTvv~i~~~~~~~~~~~~~~~~~~ 235 (242)
T 3t91_A 209 EDDMTVVVVRIDHNTPKWASIPVPAIF 235 (242)
T ss_dssp CSCEEEEEEEEEECCCCC---------
T ss_pred CCceEEEEEEEecCCCcceeecCchHh
Confidence 599999999999999999999887654
No 6
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=21.73 E-value=45 Score=24.72 Aligned_cols=23 Identities=13% Similarity=0.523 Sum_probs=16.5
Q ss_pred EEEEeeCccccccc-cccCCceeE
Q 026731 140 ILFHYDGDVNAWRG-LDWSNKAIH 162 (234)
Q Consensus 140 mLFHYDG~vd~W~d-leWS~~aIH 162 (234)
+|.||||--+.|++ .++++.-||
T Consensus 50 v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 50 MLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp EEEEESSSTTTEEEEEETTSCCEE
T ss_pred EEEEECCCCCcccEEeeCCCCcEe
Confidence 79999997666665 555665565
No 7
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=17.02 E-value=1.2e+02 Score=28.56 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=34.1
Q ss_pred ccHHHHHhhhCCCCeEE-EEEEeeCccccccccccCCc-eeEEEEe---eccceeecccc
Q 026731 123 DNVDAIVRKFLPENFTV-ILFHYDGDVNAWRGLDWSNK-AIHIAAQ---NQTKWWFAKRF 177 (234)
Q Consensus 123 ~~Vd~~V~KF~~~nF~v-mLFHYDG~vd~W~dleWS~~-aIHVsa~---~QTKWWfAKRF 177 (234)
+...++++.=+.+.|.| -+|+|++... .+|..... .+||.-. ...-||.|+|-
T Consensus 85 ~~~~~~~~~~~g~s~yVralfdy~~~~~--~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~ 142 (468)
T 3shw_A 85 DVYRRIVESDVGDSFYIRTHFEYEKESP--YGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 142 (468)
T ss_dssp HHHHHHHHHTCCCCEEEEECSCBCCSST--TBCCBCTTCEEEEEESSGGGCTTEEEEEEE
T ss_pred ccchhhhccccccccccccccCcCCCCC--CCceEccCCEEEEeecccCCCCCeEEEEEc
Confidence 34555665434456655 9999999764 35665554 4566654 34579999984
No 8
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=15.18 E-value=1.2e+02 Score=27.31 Aligned_cols=42 Identities=19% Similarity=0.491 Sum_probs=28.6
Q ss_pred CCCeEE-EEEEeeCccccccccccCCc-eeEEEEe---eccceeecccc
Q 026731 134 PENFTV-ILFHYDGDVNAWRGLDWSNK-AIHIAAQ---NQTKWWFAKRF 177 (234)
Q Consensus 134 ~~nF~v-mLFHYDG~vd~W~dleWS~~-aIHVsa~---~QTKWWfAKRF 177 (234)
.+.|-| .||.||+.-+ .+|..... .+||.-. ...-||.|+|-
T Consensus 104 ~~~~~vral~dy~~~~~--~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~ 150 (391)
T 3tsz_A 104 GDSFYIRTHFEYEKESP--YGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 150 (391)
T ss_dssp SCCEEEEECSCBCCSST--TBCCBCTTCEEEEEESSGGGSSSEEEEEEE
T ss_pred ccccccccccccCCCCC--CcceEccCCEEEEEeccCCCCCCeEEEEEe
Confidence 456666 8999999533 36665544 5677755 34679999984
No 9
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=15.11 E-value=47 Score=25.34 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=21.7
Q ss_pred eccccCCccccccc------ceEEEEeccccc
Q 026731 173 FAKRFLHPDVVSNY------DYIFLWDEDLGV 198 (234)
Q Consensus 173 fAKRFLHPdiVa~Y------dYIFlWDEDLgV 198 (234)
.-+|-|+|+..+-| +++.=||+|++-
T Consensus 38 Lk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~ 69 (86)
T 1wxm_A 38 LKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAP 69 (86)
T ss_dssp HHTTTCCSSSEEEEEESSSCEEEECSSSBSTT
T ss_pred HHHcCCCHHHeEEEEcCCCCccccchhHhhhh
Confidence 34899999998888 589999999863
No 10
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.63 E-value=95 Score=19.79 Aligned_cols=18 Identities=6% Similarity=0.419 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 026731 30 FMAIMCTVMLFVVYRTTY 47 (234)
Q Consensus 30 ~~allc~v~~F~v~~~~~ 47 (234)
++.++|+++..++-|+.+
T Consensus 13 t~vLI~vlLi~llVrsyq 30 (31)
T 1jdm_A 13 TIVLITVILMWLLVRSYQ 30 (31)
T ss_dssp HHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 456777777666666654
Done!