BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026732
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
Length = 366
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 85 GNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYA-DAGLTTFDMADHYGP----AED 139
G L + + G+W +G ++ ++ A+LR A D G+T FD+A++YGP AE+
Sbjct: 39 GKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEE 95
Query: 140 LYGIFINRVRRERPPEFLDKV-----RGLTKWVPPPVKMTSS--IVRESIDVSRRRMDVP 192
+G R+ RE + D++ G W P P S + S+D S +RM +
Sbjct: 96 NFG----RLLREDFAAYRDELIISTKAGYDMW-PGPYGSGGSRKYLLASLDQSLKRMGLE 150
Query: 193 CLDMLQFHWWDYSNP 207
+D+ H D + P
Sbjct: 151 YVDIFYSHRVDENTP 165
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
Length = 346
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 85 GNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYA-DAGLTTFDMADHYGP----AED 139
G L + + G+W +G ++ ++ A+LR A D G+T FD+A++YGP AE+
Sbjct: 19 GKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEE 75
Query: 140 LYGIFINRVRRERPPEFLDKV-----RGLTKWVPPPVKMTSS--IVRESIDVSRRRMDVP 192
+G R+ RE + D++ G W P P S + S+D S +RM +
Sbjct: 76 NFG----RLLREDFAAYRDELIISTKAGYDMW-PGPYGSGGSRKYLLASLDQSLKRMGLE 130
Query: 193 CLDMLQFHWWDYSNP 207
+D+ H D + P
Sbjct: 131 YVDIFYSHRVDENTP 145
>pdb|3ERP|A Chain A, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
pdb|3ERP|B Chain B, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
Length = 353
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 85 GNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIF 144
G +++ + G+W G R++ A+ + R D G+T FD+A++YGP
Sbjct: 40 GRSGVKLPAISLGLWHNFGDTTRVENSRAL--LQRAFDLGITHFDLANNYGPPPGSAECN 97
Query: 145 INRVRRE-----RPPEFLDKVRGLTKWVPPPVKMTS-SIVRESIDVSRRRMDVPCLDMLQ 198
R+ +E R + G T W P S + S+D S +RM + +D+
Sbjct: 98 FGRILQEDFLPWRDELIISTKAGYTMWDGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFY 157
Query: 199 FHWWDYSNP--GYLDALNHLT 217
H D P + AL+HL
Sbjct: 158 HHRPDPETPLKETMKALDHLV 178
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 91 ICRVLNGMWQTSGG-WGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINR 147
+ RV G W G WG D D+ V + D G+ D A YG +E++ G R
Sbjct: 31 LSRVALGTWAIGGWMWGGPDDDNGVRTIHAALDEGINLIDTAPVYGFGHSEEIVG----R 86
Query: 148 VRRERPPEFLDKVRGLTKWVPPPVKMTSSI-------VRESIDVSRRRMDVPCLDMLQFH 200
E+P + + WV K +R+ ++ S RR+ V +D+ Q H
Sbjct: 87 ALAEKPNKAHVATKLGLHWVGEDEKNMKVFRDSRPARIRKEVEDSLRRLRVETIDLEQIH 146
Query: 201 WWDYSNP 207
W D P
Sbjct: 147 WPDDKTP 153
>pdb|1PZ1|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11b(Holo)
pdb|1PZ1|B Chain B, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11b(Holo)
Length = 333
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 82 VSNGNDSLEICRVLNGMWQTSG-GWGRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAE 138
S + +E R+ G W G WG D +++ + D G+T D A Y G +E
Sbjct: 4 TSIADTGIEASRIGLGTWAIGGTXWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSE 63
Query: 139 DLYGIFINRVRRERPPEFLDKVRGLTK----WVPPPVKMTSSIVR--ESIDVSRRRMDVP 192
++ G I + D+V TK W + ++ R E ++ S +R+
Sbjct: 64 EIVGKAIKEYXKR------DQVILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTD 117
Query: 193 CLDMLQFHWWD 203
+D+ Q HW D
Sbjct: 118 YIDLYQVHWPD 128
>pdb|3O0K|A Chain A, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
pdb|3O0K|B Chain B, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
pdb|3O0K|C Chain C, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
pdb|3O0K|D Chain D, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
Length = 283
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 86 NDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFI 145
ND I ++ G+WQ I D+AV A+ AG D A YG E + G I
Sbjct: 32 NDGNHIPQLGYGVWQ-------ISNDEAVSAVSEALKAGYRHIDTATIYGNEEGV-GKAI 83
Query: 146 NRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS 205
N R FL TK S++ ++ D S +++ +D+ HW S
Sbjct: 84 NGSGIARADIFL-----TTKLWNSDQGYESTL--KAFDTSLKKLGTDYVDLYLIHWPMPS 136
Query: 206 NPGYLDALNHLTDLKEEA 223
+++ LKEE
Sbjct: 137 KDLFMETWRAFIKLKEEG 154
>pdb|2WZM|A Chain A, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZM|B Chain B, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|A Chain A, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|B Chain B, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
Length = 283
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 104 GWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGL 163
G G + +A ++ +AG D A YG E G I R D++
Sbjct: 28 GVGELSDSEAERSVSAALEAGYRLIDTAAAYGN-EAAVGRAIAASGIPR-----DEIYVT 81
Query: 164 TKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEA 223
TK P TSS + + S R+ + +D+ HW Y+D+ L +KE+
Sbjct: 82 TKLATPDQGFTSS--QAAARASLERLGLDYVDLYLIHWPGGDTSKYVDSWGGLMKVKEDG 139
Query: 224 I 224
I
Sbjct: 140 I 140
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/105 (19%), Positives = 39/105 (37%)
Query: 30 TQAMAVTIHNALPSLNALKSKSIIRNRPESRRVSANSVRCCQVATSDKQSITVSNGNDSL 89
++ +++ +N +P N K + +P + + A+S + Q ++ + N +
Sbjct: 100 SKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGV 159
Query: 90 EICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHY 134
I W WGR + MLR GL +Y
Sbjct: 160 TIVGYQANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYY 204
>pdb|1LQA|A Chain A, Tas Protein From Escherichia Coli In Complex With Nadph
pdb|1LQA|B Chain B, Tas Protein From Escherichia Coli In Complex With Nadph
Length = 346
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 105 WGRIDRDDAVDAMLRYADA-GLTTFDMADHY---------GPAEDLYGIFINRVRRERPP 154
+G + + A L YA A G+ D+A+ Y G E G ++ +
Sbjct: 23 FGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKL 82
Query: 155 EFLDKVRGLT----KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHW 201
KV G + K + P + +RE++ S +R+ LD+ Q HW
Sbjct: 83 IIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHW 133
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 128 FDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKW 166
F + DHY P + + F+N + R R P + + L++W
Sbjct: 120 FLLVDHYAPEDPVLDEFVNHLNRLRDPSHV-RESSLSEW 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,587,400
Number of Sequences: 62578
Number of extensions: 245533
Number of successful extensions: 489
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 12
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)