Query 026732
Match_columns 234
No_of_seqs 174 out of 1225
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 3E-38 6.6E-43 284.1 16.7 152 79-234 1-159 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1E-35 2.2E-40 266.7 17.0 159 74-234 7-168 (336)
3 PLN02587 L-galactose dehydroge 100.0 3.7E-35 8E-40 263.2 15.8 151 81-234 1-155 (314)
4 COG0656 ARA1 Aldo/keto reducta 100.0 2.7E-35 5.9E-40 259.1 13.2 138 80-234 4-144 (280)
5 TIGR01293 Kv_beta voltage-depe 100.0 2.1E-34 4.6E-39 258.8 16.9 148 81-234 1-153 (317)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 1E-33 2.2E-38 257.4 16.9 151 78-234 12-171 (346)
7 PRK10625 tas putative aldo-ket 100.0 9.7E-34 2.1E-38 257.3 16.4 149 79-234 1-182 (346)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.1E-32 2.5E-37 242.3 16.5 148 81-234 1-151 (285)
9 KOG1577 Aldo/keto reductase fa 100.0 8E-33 1.7E-37 244.2 13.2 142 81-234 6-162 (300)
10 PRK14863 bifunctional regulato 100.0 1.4E-32 3E-37 244.9 12.4 136 88-234 2-145 (292)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2E-31 4.4E-36 234.2 14.4 127 90-234 2-132 (267)
12 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.5E-31 5.5E-36 234.7 14.2 134 81-234 6-141 (275)
13 PRK10376 putative oxidoreducta 100.0 1E-30 2.2E-35 232.3 16.9 149 80-234 8-168 (290)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.4E-30 5.2E-35 227.3 14.7 136 93-234 1-140 (283)
15 COG4989 Predicted oxidoreducta 100.0 6.9E-30 1.5E-34 219.0 10.4 152 79-234 1-160 (298)
16 KOG1576 Predicted oxidoreducta 100.0 1.2E-29 2.6E-34 219.3 11.3 155 76-233 19-180 (342)
17 COG1453 Predicted oxidoreducta 99.9 4.1E-27 8.9E-32 211.2 11.6 145 79-233 1-153 (391)
18 COG0635 HemN Coproporphyrinoge 83.5 15 0.00031 34.7 10.8 61 172-234 200-275 (416)
19 PRK00208 thiG thiazole synthas 80.9 18 0.0004 31.8 9.7 61 166-226 66-126 (250)
20 KOG3023 Glutamate-cysteine lig 77.9 2 4.4E-05 37.7 2.8 26 209-234 155-180 (285)
21 PF03102 NeuB: NeuB family; I 73.4 33 0.00072 29.9 9.3 109 108-233 53-180 (241)
22 PRK09058 coproporphyrinogen II 64.9 1.1E+02 0.0023 29.1 11.5 61 172-234 226-303 (449)
23 COG1748 LYS9 Saccharopine dehy 62.7 47 0.001 31.2 8.4 80 112-205 80-159 (389)
24 COG2022 ThiG Uncharacterized e 62.0 38 0.00082 29.7 7.1 59 167-225 74-132 (262)
25 COG2089 SpsE Sialic acid synth 59.5 1.5E+02 0.0032 27.4 11.1 106 108-233 87-214 (347)
26 cd04728 ThiG Thiazole synthase 58.0 52 0.0011 29.0 7.3 60 167-226 67-126 (248)
27 PRK13796 GTPase YqeH; Provisio 57.8 1.2E+02 0.0027 27.8 10.3 115 108-233 54-171 (365)
28 PRK06294 coproporphyrinogen II 57.3 1.1E+02 0.0024 28.1 9.9 60 172-233 166-241 (370)
29 PF06174 DUF987: Protein of un 55.3 6.5 0.00014 27.1 1.1 9 5-13 35-43 (66)
30 TIGR00126 deoC deoxyribose-pho 52.9 1.1E+02 0.0024 26.1 8.5 71 108-193 129-205 (211)
31 cd06543 GH18_PF-ChiA-like PF-C 51.7 1E+02 0.0022 27.6 8.5 68 155-222 69-136 (294)
32 PRK05660 HemN family oxidoredu 50.3 2.1E+02 0.0045 26.4 10.5 61 172-234 170-242 (378)
33 PF05690 ThiG: Thiazole biosyn 49.3 37 0.00079 29.8 5.0 57 169-225 69-125 (247)
34 PRK05283 deoxyribose-phosphate 47.8 1.3E+02 0.0027 26.7 8.2 78 108-195 143-227 (257)
35 PRK08609 hypothetical protein; 47.7 1.1E+02 0.0023 30.2 8.5 22 113-134 351-372 (570)
36 PRK08392 hypothetical protein; 47.4 1.7E+02 0.0037 24.5 9.9 23 112-134 15-37 (215)
37 cd00739 DHPS DHPS subgroup of 47.2 1.9E+02 0.0042 25.2 9.4 112 115-232 87-207 (257)
38 PRK07379 coproporphyrinogen II 46.9 2.2E+02 0.0049 26.4 10.3 59 173-233 179-253 (400)
39 PRK05628 coproporphyrinogen II 45.6 2.4E+02 0.0052 25.8 12.7 60 172-234 171-247 (375)
40 cd00959 DeoC 2-deoxyribose-5-p 44.3 1.5E+02 0.0032 24.7 8.0 68 109-191 129-202 (203)
41 COG0279 GmhA Phosphoheptose is 43.7 1.9E+02 0.0042 24.1 8.5 108 111-231 28-143 (176)
42 COG3172 NadR Predicted ATPase/ 43.4 62 0.0013 27.0 5.2 94 122-223 78-185 (187)
43 CHL00162 thiG thiamin biosynth 40.9 1.2E+02 0.0027 26.9 7.0 58 168-225 76-139 (267)
44 cd07948 DRE_TIM_HCS Saccharomy 39.7 2.6E+02 0.0056 24.5 10.6 23 109-131 20-42 (262)
45 PRK13347 coproporphyrinogen II 39.2 2.3E+02 0.005 26.7 9.3 60 172-233 215-289 (453)
46 TIGR00538 hemN oxygen-independ 38.2 1.7E+02 0.0038 27.6 8.2 60 172-233 214-288 (455)
47 PRK06740 histidinol-phosphatas 38.1 3.1E+02 0.0067 24.9 11.2 49 180-229 156-220 (331)
48 COG3623 SgaU Putative L-xylulo 37.8 65 0.0014 28.4 4.7 61 86-147 65-136 (287)
49 PRK07535 methyltetrahydrofolat 37.6 2.8E+02 0.0061 24.3 10.3 25 209-233 173-199 (261)
50 PRK08446 coproporphyrinogen II 37.1 3.2E+02 0.007 24.8 11.4 61 172-234 161-230 (350)
51 PRK10508 hypothetical protein; 35.0 68 0.0015 29.2 4.8 22 173-194 286-307 (333)
52 COG4464 CapC Capsular polysacc 35.0 2.9E+02 0.0062 24.2 8.1 43 105-147 14-61 (254)
53 PRK08208 coproporphyrinogen II 34.9 3.5E+02 0.0075 25.4 9.6 60 172-233 204-273 (430)
54 PRK08599 coproporphyrinogen II 34.5 2.4E+02 0.0053 25.7 8.4 60 172-233 163-238 (377)
55 COG1902 NemA NADH:flavin oxido 34.0 3E+02 0.0065 25.5 8.8 22 108-129 139-167 (363)
56 cd03770 SR_TndX_transposase Se 33.8 84 0.0018 24.5 4.6 43 180-222 55-97 (140)
57 PRK11840 bifunctional sulfur c 33.3 2E+02 0.0043 26.4 7.3 60 167-226 141-200 (326)
58 TIGR00126 deoC deoxyribose-pho 33.3 2.3E+02 0.0051 24.1 7.5 102 106-222 13-114 (211)
59 PRK07114 keto-hydroxyglutarate 33.0 3.2E+02 0.0069 23.5 8.3 40 108-147 24-63 (222)
60 PF14387 DUF4418: Domain of un 32.9 12 0.00027 29.3 -0.4 11 3-13 31-41 (124)
61 cd02930 DCR_FMN 2,4-dienoyl-Co 32.5 3.8E+02 0.0083 24.3 9.6 23 173-196 221-243 (353)
62 PF00682 HMGL-like: HMGL-like 31.5 3.1E+02 0.0068 23.0 9.7 108 108-230 11-128 (237)
63 PRK00507 deoxyribose-phosphate 31.1 2.6E+02 0.0057 23.9 7.5 74 107-192 132-208 (221)
64 cd00338 Ser_Recombinase Serine 30.3 1.1E+02 0.0023 23.1 4.5 46 179-224 51-96 (137)
65 COG1854 LuxS LuxS protein invo 29.7 31 0.00068 28.2 1.4 54 89-145 75-131 (161)
66 PRK05588 histidinol-phosphatas 27.9 3.9E+02 0.0083 22.9 11.6 107 111-229 16-143 (255)
67 PRK11267 biopolymer transport 27.8 2.1E+02 0.0045 22.5 5.9 55 172-232 80-134 (141)
68 PRK11024 colicin uptake protei 27.1 2E+02 0.0043 22.5 5.7 53 173-231 85-137 (141)
69 TIGR01228 hutU urocanate hydra 26.6 1.2E+02 0.0026 29.6 4.9 40 184-231 193-232 (545)
70 PF13580 SIS_2: SIS domain; PD 26.6 73 0.0016 24.8 3.0 109 111-231 22-137 (138)
71 cd00668 Ile_Leu_Val_MetRS_core 26.3 90 0.002 27.7 4.0 46 176-226 82-130 (312)
72 PRK05414 urocanate hydratase; 26.3 1.2E+02 0.0026 29.6 4.9 39 184-230 202-240 (556)
73 cd03768 SR_ResInv Serine Recom 26.3 1.7E+02 0.0037 21.8 5.0 42 180-223 43-84 (126)
74 cd00814 MetRS_core catalytic c 25.9 1E+02 0.0022 27.6 4.2 46 176-225 69-114 (319)
75 PRK00507 deoxyribose-phosphate 25.8 4.2E+02 0.0091 22.6 8.0 101 107-222 18-118 (221)
76 COG2874 FlaH Predicted ATPases 25.8 3.8E+02 0.0083 23.4 7.4 138 81-230 18-165 (235)
77 PRK11613 folP dihydropteroate 25.7 4.8E+02 0.01 23.3 8.4 24 209-232 197-220 (282)
78 cd08620 PI-PLCXDc_like_1 Catal 25.0 2.9E+02 0.0062 24.7 6.9 15 116-130 35-49 (281)
79 PF01527 HTH_Tnp_1: Transposas 24.9 28 0.00062 23.8 0.4 42 108-149 7-48 (76)
80 cd05006 SIS_GmhA Phosphoheptos 24.3 1.4E+02 0.0031 24.0 4.5 39 191-233 99-137 (177)
81 cd07945 DRE_TIM_CMS Leptospira 24.1 5E+02 0.011 22.9 11.1 29 107-135 143-171 (280)
82 TIGR03569 NeuB_NnaB N-acetylne 23.5 5.7E+02 0.012 23.3 11.6 111 108-233 73-202 (329)
83 PF02585 PIG-L: GlcNAc-PI de-N 23.4 3.2E+02 0.0069 20.4 6.2 26 175-203 85-110 (128)
84 cd03174 DRE_TIM_metallolyase D 23.3 1.7E+02 0.0037 24.8 5.1 56 172-229 15-71 (265)
85 TIGR01496 DHPS dihydropteroate 23.2 5E+02 0.011 22.6 9.8 57 176-232 144-205 (257)
86 KOG0922 DEAH-box RNA helicase 22.3 90 0.0019 31.3 3.3 38 185-226 414-451 (674)
87 PRK09249 coproporphyrinogen II 22.2 6.6E+02 0.014 23.6 10.6 60 172-233 214-288 (453)
88 PRK05799 coproporphyrinogen II 22.1 6E+02 0.013 23.1 9.6 27 173-200 163-189 (374)
89 TIGR03597 GTPase_YqeH ribosome 21.5 3.8E+02 0.0082 24.5 7.2 115 108-233 48-165 (360)
90 cd00818 IleRS_core catalytic c 21.0 1.2E+02 0.0027 27.4 3.8 46 177-226 88-135 (338)
91 PF10171 DUF2366: Uncharacteri 20.8 1.9E+02 0.0042 24.0 4.6 35 193-228 77-111 (173)
92 PRK08195 4-hyroxy-2-oxovalerat 20.8 6.4E+02 0.014 22.9 11.3 24 108-131 22-45 (337)
93 smart00857 Resolvase Resolvase 20.4 2.1E+02 0.0045 21.9 4.6 17 112-128 20-36 (148)
94 TIGR02811 formate_TAT formate 20.4 86 0.0019 21.7 2.1 13 17-29 8-22 (66)
95 PF01118 Semialdhyde_dh: Semia 20.3 1.4E+02 0.0031 22.4 3.6 27 109-135 75-101 (121)
96 KOG0544 FKBP-type peptidyl-pro 20.2 34 0.00073 25.9 -0.1 7 4-10 23-29 (108)
97 PF10007 DUF2250: Uncharacteri 20.0 54 0.0012 24.4 1.0 45 181-229 11-55 (92)
98 cd00419 Ferrochelatase_C Ferro 20.0 4.1E+02 0.0089 20.7 6.2 16 175-190 40-55 (135)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3e-38 Score=284.15 Aligned_cols=152 Identities=19% Similarity=0.251 Sum_probs=134.3
Q ss_pred ceEEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCcc--ccHHHHHHHHHhhh-hcCCCc
Q 026732 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVR-RERPPE 155 (234)
Q Consensus 79 ~~~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG--~sE~~lG~al~~~~-r~~~~~ 155 (234)
|.+|+||++|++||+||||||.+|+.+...+.+++.++|++|+|+||||||||++|| .+|+++|++|++.+ |+ +
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd---~ 77 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRD---K 77 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCC---e
Confidence 468999999999999999999998765555666888899999999999999999998 59999999999876 34 7
Q ss_pred eeeeEEeecccCC-C---CCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEec
Q 026732 156 FLDKVRGLTKWVP-P---PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLR 231 (234)
Q Consensus 156 v~~~~~~~tk~~~-~---~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS 231 (234)
+++++|+...+++ . ..++++++|+++++.||+|||+|||||||+||||+.++ .+|++++|.+|+++|+|++||+|
T Consensus 78 vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S 156 (316)
T COG0667 78 VVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYIGVS 156 (316)
T ss_pred EEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEec
Confidence 7777776655432 1 15789999999999999999999999999999999888 89999999999999999999999
Q ss_pred cCC
Q 026732 232 LLL 234 (234)
Q Consensus 232 N~~ 234 (234)
||.
T Consensus 157 ~~~ 159 (316)
T COG0667 157 NYS 159 (316)
T ss_pred CCC
Confidence 983
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1e-35 Score=266.75 Aligned_cols=159 Identities=25% Similarity=0.328 Sum_probs=136.8
Q ss_pred cCCCcceEEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCcc--ccHHHHHHHHHhhhhc
Q 026732 74 TSDKQSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRE 151 (234)
Q Consensus 74 ~~~~~~~~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG--~sE~~lG~al~~~~r~ 151 (234)
++...+.++++|++|++||++|||||.|...++..+++++++++++|+|+|+||||||++|| .||+++|++|++++..
T Consensus 7 ~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~ 86 (336)
T KOG1575|consen 7 STELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWR 86 (336)
T ss_pred cchhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCc
Confidence 33445689999999999999999998554433346999999999999999999999999998 4999999999996543
Q ss_pred CCCceeeeEEeecccC-CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEe
Q 026732 152 RPPEFLDKVRGLTKWV-PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKL 230 (234)
Q Consensus 152 ~~~~v~~~~~~~tk~~-~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGv 230 (234)
+. ++++++|+....+ +.+...+..++.+.++.|++|||++||||||+||+|+.+| +++++++|.+++++|+|++||+
T Consensus 87 R~-~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~Gki~yiGl 164 (336)
T KOG1575|consen 87 RD-KVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-IEETMRALTDLVEQGKIRYWGL 164 (336)
T ss_pred CC-cEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcCceEEEEe
Confidence 33 6777776554332 3356788999999999999999999999999999999999 9999999999999999999999
Q ss_pred ccCC
Q 026732 231 RLLL 234 (234)
Q Consensus 231 SN~~ 234 (234)
|||.
T Consensus 165 Se~s 168 (336)
T KOG1575|consen 165 SEWS 168 (336)
T ss_pred ccCC
Confidence 9984
No 3
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.7e-35 Score=263.24 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=126.3
Q ss_pred EEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccc--cHHHHHHHHHhhhhcCCCceee
Q 026732 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (234)
Q Consensus 81 ~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~--sE~~lG~al~~~~r~~~~~v~~ 158 (234)
+|+||++|++||+||||||++|+.|+..+.+++.+++++|++.|||+||||+.||. +|+.+|++|++.+..+. ++++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~-~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPRE-KYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcc-eEEE
Confidence 57899999999999999999987787788899999999999999999999999976 89999999987432222 4554
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCC--cHHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP--GYLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 159 ~~~~~tk~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~--~~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
++|+.. ++...+++++.+++++++||++||+||||+|++|||+...+ .++++|++|++|+++||||+||||||.
T Consensus 80 ~TK~~~--~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 80 STKCGR--YGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred Eecccc--CCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 444321 11223678999999999999999999999999999974321 267899999999999999999999983
No 4
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=259.09 Aligned_cols=138 Identities=23% Similarity=0.291 Sum_probs=119.8
Q ss_pred eEEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHh--hhhcCCCcee
Q 026732 80 ITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINR--VRRERPPEFL 157 (234)
Q Consensus 80 ~~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~--~~r~~~~~v~ 157 (234)
.+.+| ++|.+||.||||||++++ .+...+++.+|++.|+++||||+.|| ||+.+|++|++ .+|+
T Consensus 4 ~~~~l-~~g~~iP~iGlGt~~~~~------~~~~~~av~~Al~~Gyr~IDTA~~Yg-nE~~VG~aI~~s~v~Re------ 69 (280)
T COG0656 4 TKVTL-NNGVEIPAIGLGTWQIGD------DEWAVRAVRAALELGYRLIDTAEIYG-NEEEVGEAIKESGVPRE------ 69 (280)
T ss_pred ceeec-CCCCcccCcceEeeecCC------chhHHHHHHHHHHhCcceEecHhHhc-CHHHHHHHHHhcCCCHH------
Confidence 45677 567889999999999964 23388999999999999999999999 99999999987 3444
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCC-CCcHHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 158 DKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 158 ~~~~~~tk~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~-~~~~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
++|+.||.|+. +++++.+.+++++||+|||+||||||++|||.+. ...++|+|++|++++++|+||+||||||.
T Consensus 70 -elFittKvw~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~ 144 (280)
T COG0656 70 -ELFITTKVWPS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFG 144 (280)
T ss_pred -HeEEEeecCCc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCC
Confidence 56677888876 6688999999999999999999999999999763 22268999999999999999999999995
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.1e-34 Score=258.77 Aligned_cols=148 Identities=18% Similarity=0.255 Sum_probs=124.6
Q ss_pred EEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCcc--ccHHHHHHHHHhh--hhcCCCce
Q 026732 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRV--RRERPPEF 156 (234)
Q Consensus 81 ~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG--~sE~~lG~al~~~--~r~~~~~v 156 (234)
+|+||++|++||+||||||++.+ +..+.+++.+++++|+++|||+||||+.|| .+|+++|++|++. +|+ ++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g--~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~---~~ 75 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFG--GQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRS---SY 75 (317)
T ss_pred CcccCCCCCeecceeecCCccCC--CCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcc---cE
Confidence 47899999999999999997432 135788999999999999999999999997 5999999999853 244 56
Q ss_pred eeeEEeeccc-CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 157 LDKVRGLTKW-VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 157 ~~~~~~~tk~-~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
++++|+.... .+...+++++.+++++++||+|||+||||+|++|||++..+ ++++|++|++|+++||||+||||||.
T Consensus 76 ~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~~ 153 (317)
T TIGR01293 76 VITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRWS 153 (317)
T ss_pred EEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 6665543211 01123568999999999999999999999999999998777 89999999999999999999999984
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1e-33 Score=257.41 Aligned_cols=151 Identities=21% Similarity=0.312 Sum_probs=126.6
Q ss_pred cceEEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccc----cHHHHHHHHHhh---hh
Q 026732 78 QSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP----AEDLYGIFINRV---RR 150 (234)
Q Consensus 78 ~~~~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~----sE~~lG~al~~~---~r 150 (234)
.|++|+||++|++||+||||||+..+. ..+.+++.++|++|+|.|||+||||+.||+ +|+.+|++|++. +|
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~~g~--~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~R 89 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHNFGH--VNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYR 89 (346)
T ss_pred CcceeecCCCCcccccccccCccccCC--CCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCC
Confidence 367999999999999999999973211 235677899999999999999999999984 899999999863 24
Q ss_pred cCCCceeeeEEeecccCCC--CCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeE
Q 026732 151 ERPPEFLDKVRGLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQV 228 (234)
Q Consensus 151 ~~~~~v~~~~~~~tk~~~~--~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~I 228 (234)
+ ++++++|+....++. +.+.+++++++++++||+|||+||||+|++|||++..+ +++++++|++|+++|||++|
T Consensus 90 d---~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~i 165 (346)
T PRK09912 90 D---ELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-MEETASALAHAVQSGKALYV 165 (346)
T ss_pred C---eEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEE
Confidence 4 666666654322222 23568999999999999999999999999999998777 89999999999999999999
Q ss_pred EeccCC
Q 026732 229 KLRLLL 234 (234)
Q Consensus 229 GvSN~~ 234 (234)
|||||.
T Consensus 166 GvSn~~ 171 (346)
T PRK09912 166 GISSYS 171 (346)
T ss_pred EecCCC
Confidence 999984
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=9.7e-34 Score=257.27 Aligned_cols=149 Identities=18% Similarity=0.213 Sum_probs=123.0
Q ss_pred ceEEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCcc---------ccHHHHHHHHHhhh
Q 026732 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG---------PAEDLYGIFINRVR 149 (234)
Q Consensus 79 ~~~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG---------~sE~~lG~al~~~~ 149 (234)
|.+|+||++|++||+||||||++|+ ..+.+++.+++++|++.||||||||+.|| .+|+.+|++|+..+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~---~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE---QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRG 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC---CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcC
Confidence 4579999999999999999999874 34678999999999999999999999995 49999999998532
Q ss_pred -hcCCCceeeeEEeeccc-C-----CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCC-----------------
Q 026732 150 -RERPPEFLDKVRGLTKW-V-----PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----------------- 205 (234)
Q Consensus 150 -r~~~~~v~~~~~~~tk~-~-----~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~----------------- 205 (234)
|+ ++++++|+.... . ....+++++.+++++++||+|||+||||||++|||++.
T Consensus 78 ~R~---~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~ 154 (346)
T PRK10625 78 SRE---KLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPA 154 (346)
T ss_pred Ccc---eEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCC
Confidence 43 555555542110 0 00124689999999999999999999999999999752
Q ss_pred CCcHHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 206 NPGYLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 206 ~~~~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
.+ ++++|++|++|+++|+|++||||||.
T Consensus 155 ~~-~~e~~~aL~~l~~~GkIr~iGvSn~~ 182 (346)
T PRK10625 155 VS-LLETLDALAEQQRAGKIRYIGVSNET 182 (346)
T ss_pred CC-HHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34 78999999999999999999999984
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.1e-32 Score=242.27 Aligned_cols=148 Identities=25% Similarity=0.410 Sum_probs=127.3
Q ss_pred EEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccc--cHHHHHHHHHhhh-hcCCCcee
Q 026732 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVR-RERPPEFL 157 (234)
Q Consensus 81 ~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~--sE~~lG~al~~~~-r~~~~~v~ 157 (234)
+|+||++|++||+||||||.++..| .+.+++.+++++|++.|||+||||+.||. +|+.+|++|++.+ |+ +++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~---~~~ 75 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY--VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPRE---EVF 75 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC--CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcC---cEE
Confidence 4789999999999999999997655 57899999999999999999999999987 9999999999865 44 555
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 158 DKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 158 ~~~~~~tk~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
+++|+..... ...+.+++.+++++++||++||+||||+|++|||+...+...++|++|++++++|+||+||||||.
T Consensus 76 i~tK~~~~~~-~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~ 151 (285)
T cd06660 76 IATKVGPRPG-DGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFS 151 (285)
T ss_pred EEeeecCCCC-CCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCC
Confidence 5555432211 113479999999999999999999999999999987655588999999999999999999999984
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=8e-33 Score=244.24 Aligned_cols=142 Identities=18% Similarity=0.278 Sum_probs=124.0
Q ss_pred EEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHhhhhcCCCceeeeE
Q 026732 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKV 160 (234)
Q Consensus 81 ~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~~r~~~~~v~~~~ 160 (234)
..+| ++|.++|.||||||+. ++++..++++.|++.|++|||||..|| +|+.+|++|++.-.+.. ..+.++
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~-------~~~~~~~aV~~Al~~GYRHIDtA~~Y~-NE~evG~aik~~i~~~~-v~Redi 75 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS-------PPGQVAEAVKAAIKAGYRHIDTAHVYG-NEKEVGEAIKELLAEGG-VKREDI 75 (300)
T ss_pred eEec-cCCCccceeeeEeccc-------ChhhHHHHHHHHHHhCcceeechhhhC-ChHHHHHHHHHHhhhCC-cchhhh
Confidence 5788 8999999999999984 578899999999999999999999999 99999999997532222 344577
Q ss_pred EeecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCC---------------CCcHHHHHHHHHHHHHhCCc
Q 026732 161 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------NPGYLDALNHLTDLKEEAIG 225 (234)
Q Consensus 161 ~~~tk~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~---------------~~~~~e~~~aL~~l~~~G~i 225 (234)
|+.||.|+. .+.++.++.++++||++||+||+|||++|||-.. ..++.++|++|++++++|++
T Consensus 76 FiTSKlw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~ 153 (300)
T KOG1577|consen 76 FITSKLWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLV 153 (300)
T ss_pred eeeeccCcc--ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCc
Confidence 888999986 5789999999999999999999999999998653 11378999999999999999
Q ss_pred CeEEeccCC
Q 026732 226 VQVKLRLLL 234 (234)
Q Consensus 226 r~IGvSN~~ 234 (234)
|+||||||+
T Consensus 154 rsIGVSNF~ 162 (300)
T KOG1577|consen 154 RSIGVSNFN 162 (300)
T ss_pred eEeeeecCC
Confidence 999999995
No 10
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.98 E-value=1.4e-32 Score=244.92 Aligned_cols=136 Identities=22% Similarity=0.176 Sum_probs=114.5
Q ss_pred CcccccceeccccCCCC-------CCCCCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHhhhhcCCCceeeeE
Q 026732 88 SLEICRVLNGMWQTSGG-------WGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKV 160 (234)
Q Consensus 88 g~~Vs~lglGt~~~g~~-------~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~~r~~~~~v~~~~ 160 (234)
+++||+||||||++|+. |+..+.+++.+++++|++.||||||||+.||.+|+.+|++|+...+. +++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~~~~---~~~--- 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRPVPF---RVT--- 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccCCce---Eee---
Confidence 47899999999999853 57789999999999999999999999999999999999999641111 233
Q ss_pred EeecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCC-CCcHHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 161 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 161 ~~~tk~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~-~~~~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
+.+|.. +.+++.+++++++||+|||+||||+|++|||++. .+..+++|++|++|+++||||+||||||.
T Consensus 76 -i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 76 -LSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred -cccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 334421 3578999999999999999999999999999863 33236889999999999999999999984
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=99.97 E-value=2e-31 Score=234.25 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=109.4
Q ss_pred ccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHhh--hhcCCCceeeeEEeecccC
Q 026732 90 EICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRV--RRERPPEFLDKVRGLTKWV 167 (234)
Q Consensus 90 ~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~--~r~~~~~v~~~~~~~tk~~ 167 (234)
+||+||||||+++ .+++.+++++|++.|||+||||+.|| +|+.+|++|+.. +|+ ++++. ||.+
T Consensus 2 ~vs~lglGt~~~~-------~~~~~~~i~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~---~v~i~----TK~~ 66 (267)
T PRK11172 2 SIPAFGLGTFRLK-------DQVVIDSVKTALELGYRAIDTAQIYD-NEAAVGQAIAESGVPRD---ELFIT----TKIW 66 (267)
T ss_pred CCCCEeeEccccC-------hHHHHHHHHHHHHcCCCEEEccchhC-CHHHHHHHHHHcCCChh---HeEEE----EEeC
Confidence 6999999999873 46789999999999999999999999 799999999853 344 45444 4443
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCC--CCcHHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS--NPGYLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 168 ~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~--~~~~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
+. ..+++.+++++++||+|||+||||+|++|||++. .+ .+++|++|++|+++||||+||||||.
T Consensus 67 ~~--~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~-~~~~~~~l~~l~~~Gkir~iGvSn~~ 132 (267)
T PRK11172 67 ID--NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVS-VEEFMQALLEAKKQGLTREIGISNFT 132 (267)
T ss_pred CC--CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCC-HHHHHHHHHHHHHCCCCCEEEEccCC
Confidence 32 4689999999999999999999999999999763 44 78999999999999999999999984
No 12
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.97 E-value=2.5e-31 Score=234.72 Aligned_cols=134 Identities=19% Similarity=0.329 Sum_probs=115.9
Q ss_pred EEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHhhh--hcCCCceee
Q 026732 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVR--RERPPEFLD 158 (234)
Q Consensus 81 ~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~~--r~~~~~v~~ 158 (234)
++.| ++|++||+||||||++ +.+++.+++++|++.|+||||||+.|| +|+.+|++|++.+ |+ ++++
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~-------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~---~~~i 73 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA-------SNEEVITAIHKALEVGYRSIDTAAIYK-NEEGVGKALKEASVARE---ELFI 73 (275)
T ss_pred eEEc-CCCCccCCcceECccC-------CHHHHHHHHHHHHHhCCCEEEchhhhC-CHHHHHHHHHHcCCCHH---HEEE
Confidence 4667 7899999999999976 357899999999999999999999999 8999999998642 43 4544
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 159 ~~~~~tk~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
. ||.++ .+++.+++++++||+|||+||||+|++|||++..+.+.++|++|++|+++|+||+||||||.
T Consensus 74 ~----tK~~~----~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 141 (275)
T PRK11565 74 T----TKLWN----DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQ 141 (275)
T ss_pred E----EEecC----cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 4 44432 25789999999999999999999999999987654478999999999999999999999984
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=99.97 E-value=1e-30 Score=232.32 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=119.9
Q ss_pred eEEEcCCCCcccccceeccccCCC--CCCC-CCHHHHHHHHHHHHHhCCCeeecCCCccc--cHHHHHHHHHhhhhcCCC
Q 026732 80 ITVSNGNDSLEICRVLNGMWQTSG--GWGR-IDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPP 154 (234)
Q Consensus 80 ~~r~LG~tg~~Vs~lglGt~~~g~--~~~~-~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~--sE~~lG~al~~~~r~~~~ 154 (234)
.++.|+ |++||+||||||++|+ .|+. .+.+++.+++++|+++||||||||+.||. +|+.+|++++.. |+
T Consensus 8 ~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~-R~--- 81 (290)
T PRK10376 8 GTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHPY-PD--- 81 (290)
T ss_pred CceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhcC-CC---
Confidence 457775 8999999999999975 3664 46788999999999999999999999986 799999999642 44
Q ss_pred ceeeeEEeecccCC---CCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCC----CCCcHHHHHHHHHHHHHhCCcCe
Q 026732 155 EFLDKVRGLTKWVP---PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEEAIGVQ 227 (234)
Q Consensus 155 ~v~~~~~~~tk~~~---~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~----~~~~~~e~~~aL~~l~~~G~ir~ 227 (234)
++++++|+...... ...+.+++.+++++++||+|||+||||+|++||++. ....++++|++|++|+++||||+
T Consensus 82 ~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~ 161 (290)
T PRK10376 82 DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRH 161 (290)
T ss_pred eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeE
Confidence 56666554321110 123578999999999999999999999999988521 11237899999999999999999
Q ss_pred EEeccCC
Q 026732 228 VKLRLLL 234 (234)
Q Consensus 228 IGvSN~~ 234 (234)
||||||.
T Consensus 162 iGvSn~~ 168 (290)
T PRK10376 162 IGLSNVT 168 (290)
T ss_pred EEecCCC
Confidence 9999984
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.97 E-value=2.4e-30 Score=227.31 Aligned_cols=136 Identities=25% Similarity=0.422 Sum_probs=115.1
Q ss_pred cceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCc--cccHHHHHHHHHh--hhhcCCCceeeeEEeecccCC
Q 026732 93 RVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINR--VRRERPPEFLDKVRGLTKWVP 168 (234)
Q Consensus 93 ~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~Y--G~sE~~lG~al~~--~~r~~~~~v~~~~~~~tk~~~ 168 (234)
+||||||++++. ..+.+++.++++.|++.|||+||||+.| |.+|+.+|++|++ .+|+ ++++.+|+. ....
T Consensus 1 ~l~lG~~~~~~~--~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~---~~~i~tK~~-~~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE--RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRD---DIFISTKVY-GDGK 74 (283)
T ss_dssp SBEEECTTBTTT--TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGG---GSEEEEEEE-SSSS
T ss_pred CEEEEccccCCC--CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccc---ccccccccc-cccc
Confidence 689999999753 6799999999999999999999999999 6699999999998 4555 666666661 1122
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 169 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 169 ~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
....++++.+++++++||++||+||||+|++|||+...+..+++|++|++|+++|+||+||||||.
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 140 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFS 140 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccc
Confidence 334789999999999999999999999999999997766589999999999999999999999984
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.96 E-value=6.9e-30 Score=219.03 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=127.0
Q ss_pred ceEEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccc--cHHHHHHHHHhhh--hcCCC
Q 026732 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVR--RERPP 154 (234)
Q Consensus 79 ~~~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~--sE~~lG~al~~~~--r~~~~ 154 (234)
+.+..+++.|+++|++.+|+|++. .|+- .+++....+++++|.|||+||.|+.||. +|+++|.+|+-.| |++.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~-d~~~-~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki- 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLN-DWNM-SARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI- 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhh-hccC-CHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe-
Confidence 357889999999999999999995 4654 5588899999999999999999999985 9999999998654 4421
Q ss_pred ceeeeEEeecccC--C--CCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEe
Q 026732 155 EFLDKVRGLTKWV--P--PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKL 230 (234)
Q Consensus 155 ~v~~~~~~~tk~~--~--~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGv 230 (234)
+++.+..+..... | .-++.|.++|.+++|.||++|++||+|++++|+||+-.+ .+|+.+|+..|+++||||++||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~fGV 156 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHFGV 156 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-HHHHHHHHHHHHhcCCeeeeec
Confidence 2222222222111 1 136889999999999999999999999999999999888 8999999999999999999999
Q ss_pred ccCC
Q 026732 231 RLLL 234 (234)
Q Consensus 231 SN~~ 234 (234)
|||+
T Consensus 157 SNf~ 160 (298)
T COG4989 157 SNFN 160 (298)
T ss_pred CCCC
Confidence 9996
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.96 E-value=1.2e-29 Score=219.26 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=132.1
Q ss_pred CCcceEEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccc--cHHHHHHHHHhhhhcCC
Q 026732 76 DKQSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERP 153 (234)
Q Consensus 76 ~~~~~~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~--sE~~lG~al~~~~r~~~ 153 (234)
.+.|.+|.+|+||++||++|||...++..+++.+.++....+..|+..|||+|||++.||+ +|+.+|.++++.||+.
T Consensus 19 vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~a- 97 (342)
T KOG1576|consen 19 VRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREA- 97 (342)
T ss_pred HHHHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhh-
Confidence 4567899999999999999999999998888888888888888899999999999999987 8999999999999984
Q ss_pred CceeeeEEeec-ccC-CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCC---CCcHHHHHHHHHHHHHhCCcCeE
Q 026732 154 PEFLDKVRGLT-KWV-PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEAIGVQV 228 (234)
Q Consensus 154 ~~v~~~~~~~t-k~~-~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~---~~~~~e~~~aL~~l~~~G~ir~I 228 (234)
..+.+|+.. +.. ..-++++++.+++++++||+||++||+|++|+|..+.. ...+.|++.+|++++++||+|+|
T Consensus 98 --YyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~Rfi 175 (342)
T KOG1576|consen 98 --YYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFI 175 (342)
T ss_pred --eeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEe
Confidence 333333221 111 12378999999999999999999999999999997643 22377999999999999999999
Q ss_pred EeccC
Q 026732 229 KLRLL 233 (234)
Q Consensus 229 GvSN~ 233 (234)
|||.|
T Consensus 176 Gitgy 180 (342)
T KOG1576|consen 176 GITGY 180 (342)
T ss_pred eeccc
Confidence 99976
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.94 E-value=4.1e-27 Score=211.20 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=123.9
Q ss_pred ceEEEcCCCCcccccceeccccCCCCC-CCCCHHHHHHHHHHHHHhCCCeeecCCCc--cccHHHHHHHHHhhhhcCCCc
Q 026732 79 SITVSNGNDSLEICRVLNGMWQTSGGW-GRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPE 155 (234)
Q Consensus 79 ~~~r~LG~tg~~Vs~lglGt~~~g~~~-~~~~~~~~~~~l~~Al~~Gi~~fDTA~~Y--G~sE~~lG~al~~~~r~~~~~ 155 (234)
|.+|++|++|.++|.+|||||++...| +.++.+.+.++|++|+|+|||+||||.-| |.+|..+|++|+...|+ +
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Re---k 77 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYRE---K 77 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccc---e
Confidence 468999999999999999999998655 45888999999999999999999999999 99999999999987666 4
Q ss_pred eeeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHH-----HHHHHHHHHHHhCCcCeEEe
Q 026732 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYL-----DALNHLTDLKEEAIGVQVKL 230 (234)
Q Consensus 156 v~~~~~~~tk~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~-----e~~~aL~~l~~~G~ir~IGv 230 (234)
++++||.+.. ..-+++.+++.++++|++||+||+|+|.||..+.+. ++ ..++.+++++++|+||++|+
T Consensus 78 ----v~LaTKlp~~-~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~--~~k~~~~g~~df~~kak~eGkIr~~GF 150 (391)
T COG1453 78 ----VKLATKLPSW-PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET--WEKIERLGVFDFLEKAKAEGKIRNAGF 150 (391)
T ss_pred ----EEEEeecCCc-cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH--HHHHHccChHHHHHHHHhcCcEEEeee
Confidence 4455555321 135889999999999999999999999999987521 22 36899999999999999999
Q ss_pred ccC
Q 026732 231 RLL 233 (234)
Q Consensus 231 SN~ 233 (234)
|..
T Consensus 151 SfH 153 (391)
T COG1453 151 SFH 153 (391)
T ss_pred cCC
Confidence 964
No 18
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=83.49 E-value=15 Score=34.70 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEee-CCC----------CCCcHH---HHHHHHH-HHHHhCCcCeEEeccCC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY----------SNPGYL---DALNHLT-DLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~-pd~----------~~~~~~---e~~~aL~-~l~~~G~ir~IGvSN~~ 234 (234)
..+.+.+.+.++..++ |+.|+|.+|.+-. |.. ..|+.+ +.++... .|.+.|. +.+|+|||.
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa 275 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFA 275 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhc
Confidence 4577888888888776 8899999997743 221 122222 3444444 4455666 999999984
No 19
>PRK00208 thiG thiazole synthase; Reviewed
Probab=80.88 E-value=18 Score=31.79 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=50.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcC
Q 026732 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGV 226 (234)
Q Consensus 166 ~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir 226 (234)
.++....++.++..+..+-..+-++++.|-|=.+..+.+..+++.+++++.++|.++|.+-
T Consensus 66 lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v 126 (250)
T PRK00208 66 LPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV 126 (250)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE
Confidence 3444557788888888888888889999988888888877788999999999999999864
No 20
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=77.91 E-value=2 Score=37.67 Aligned_cols=26 Identities=12% Similarity=-0.089 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhCCcCeEEeccCC
Q 026732 209 YLDALNHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 209 ~~e~~~aL~~l~~~G~ir~IGvSN~~ 234 (234)
+.+.|+.|++++.+|+|..||||.|.
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfd 180 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFD 180 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccC
Confidence 45789999999999999999999874
No 21
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=73.39 E-value=33 Score=29.91 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHH-----------------HHHhhhhcCCCceeeeEEeecccCCCC
Q 026732 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGI-----------------FINRVRRERPPEFLDKVRGLTKWVPPP 170 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~-----------------al~~~~r~~~~~v~~~~~~~tk~~~~~ 170 (234)
.+.++..++.+++-+.||.||=|..... +-.++-+ .|+...+... -+++++.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~-s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgk-PvIlSTG--------- 121 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE-SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGK-PVILSTG--------- 121 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH-HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S--EEEE-T---------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH-HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCC-cEEEECC---------
Confidence 6788999999999999999997764221 1111110 0111111111 1222211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCC-CCCcHHH-HHHHHHHHHHhCCcCeEEeccC
Q 026732 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLD-ALNHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 171 ~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~-~~~~~~e-~~~aL~~l~~~G~ir~IGvSN~ 233 (234)
..+.+.|+++++...++- .-|+.++|+... ..+ .++ -++.+..|++.=- --||.|..
T Consensus 122 -~stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~-~e~~NL~~i~~L~~~f~-~~vG~SDH 180 (241)
T PF03102_consen 122 -MSTLEEIERAVEVLREAG---NEDLVLLHCVSSYPTP-PEDVNLRVIPTLKERFG-VPVGYSDH 180 (241)
T ss_dssp -T--HHHHHHHHHHHHHHC---T--EEEEEE-SSSS---GGG--TTHHHHHHHHST-SEEEEEE-
T ss_pred -CCCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCC-hHHcChHHHHHHHHhcC-CCEEeCCC
Confidence 235678888888764443 378999999653 333 333 2555555554333 46788753
No 22
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=64.92 E-value=1.1e+02 Score=29.06 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEee-CCC---------C--CC-cHHH---HH-HHHHHHHHhCCcCeEEeccCC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY---------S--NP-GYLD---AL-NHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~-pd~---------~--~~-~~~e---~~-~aL~~l~~~G~ir~IGvSN~~ 234 (234)
..+.+.+++.++..++ ++.++|++|.+.- |.. . .+ +.++ .+ .+.+.|.+.|. +.+++|||.
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~fa 303 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWA 303 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeee
Confidence 4578889888888665 9999999998763 321 0 01 1222 22 33456777887 568999983
No 23
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=62.69 E-value=47 Score=31.19 Aligned_cols=80 Identities=6% Similarity=-0.066 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCC
Q 026732 112 DAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV 191 (234)
Q Consensus 112 ~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~al~~SL~rLg~ 191 (234)
-...++++|++.|++++||+..+- .+..+.+..+ +... ..+ ....+.| ..+---...+.++--+ .+
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~-~~~~~~~~a~---~Agi-t~v----~~~G~dP---Gi~nv~a~~a~~~~~~--~i 145 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEE-PPWKLDEEAK---KAGI-TAV----LGCGFDP---GITNVLAAYAAKELFD--EI 145 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCc-hhhhhhHHHH---HcCe-EEE----cccCcCc---chHHHHHHHHHHHhhc--cc
Confidence 344799999999999999997554 3222222111 1110 111 1111222 1222222233332222 58
Q ss_pred CcccEEEEeeCCCC
Q 026732 192 PCLDMLQFHWWDYS 205 (234)
Q Consensus 192 dyiDl~~lH~pd~~ 205 (234)
++||+|..+-|++.
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999988765
No 24
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=62.04 E-value=38 Score=29.74 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCc
Q 026732 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIG 225 (234)
Q Consensus 167 ~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~i 225 (234)
++..-.++.++-....+-..+-+++++|-|=.+-.++.-.|+..|++++.+.|+++|-+
T Consensus 74 PNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~ 132 (262)
T COG2022 74 PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFV 132 (262)
T ss_pred CCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCE
Confidence 34445678888888888889999999999888888887778889999999999999965
No 25
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=59.53 E-value=1.5e+02 Score=27.39 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeecCCCccc--------------------cHHHHHHHHHhhhhcCCCceeeeEEeecccC
Q 026732 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP--------------------AEDLYGIFINRVRRERPPEFLDKVRGLTKWV 167 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~--------------------sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~ 167 (234)
.+.+...++.++|-+.|+-+|=|--.+.. ...+|...-+ ... .+++++..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~----~~k-PiIlSTGm----- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK----KGK-PIILSTGM----- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh----cCC-CEEEEccc-----
Confidence 67778889999999999998866543331 1223322221 111 23333222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCC-CCCcHHHH-HHHHHHHHHhCCcCeEEeccC
Q 026732 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDA-LNHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 168 ~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~-~~~~~~e~-~~aL~~l~~~G~ir~IGvSN~ 233 (234)
.+-+++.++++...+ -|.. |+.++|+... ..+ ++++ +.+|..|.+.= -.-||+|..
T Consensus 157 -----a~~~ei~~av~~~r~-~g~~--~i~LLhC~s~YPap-~ed~NL~~i~~l~~~F-n~~vGlSDH 214 (347)
T COG2089 157 -----ATIEEIEEAVAILRE-NGNP--DIALLHCTSAYPAP-FEDVNLKAIPKLAEAF-NAIVGLSDH 214 (347)
T ss_pred -----ccHHHHHHHHHHHHh-cCCC--CeEEEEecCCCCCC-HHHhhHHHHHHHHHHh-CCccccccC
Confidence 245778888876544 4543 9999999653 334 5553 55666665554 335788754
No 26
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=57.95 E-value=52 Score=28.97 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=50.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcC
Q 026732 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGV 226 (234)
Q Consensus 167 ~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir 226 (234)
++....++.++..+..+-..+-+|++.|-|=.+..+.+-.++..+++++.++|.++|.+-
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v 126 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV 126 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE
Confidence 344557788888888888888889999998888888877788999999999999999864
No 27
>PRK13796 GTPase YqeH; Provisional
Probab=57.76 E-value=1.2e+02 Score=27.78 Aligned_cols=115 Identities=13% Similarity=0.104 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHhC---CCeeecCCCccccHHHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHHHHH
Q 026732 108 IDRDDAVDAMLRYADAG---LTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~G---i~~fDTA~~YG~sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~al~~ 184 (234)
.++++..++++...+.- +-.+|..+.-+.-...+.+... ... .+ .+.+|..-.+.....+.+++.++.
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----~kp-vi----LViNK~DLl~~~~~~~~i~~~l~~ 124 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----NNP-VL----LVGNKADLLPKSVKKNKVKNWLRQ 124 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC----CCC-EE----EEEEchhhCCCccCHHHHHHHHHH
Confidence 46667777777766544 3456766655532333433332 111 22 245554322223345667777777
Q ss_pred HHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEeccC
Q 026732 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN~ 233 (234)
..+.+|....|++.+..... .. +++.++.+.+..+.+.+--||.+|.
T Consensus 125 ~~k~~g~~~~~v~~vSAk~g-~g-I~eL~~~I~~~~~~~~v~vvG~~Nv 171 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQKG-HG-IDELLEAIEKYREGRDVYVVGVTNV 171 (365)
T ss_pred HHHhcCCCcCcEEEEECCCC-CC-HHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 77778876567777765432 23 7888888888777778888999885
No 28
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=57.25 E-value=1.1e+02 Score=28.14 Aligned_cols=60 Identities=7% Similarity=-0.030 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEee-CCC-----------CCCcHH---HHH-HHHHHHHHhCCcCeEEeccC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNPGYL---DAL-NHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~-pd~-----------~~~~~~---e~~-~aL~~l~~~G~ir~IGvSN~ 233 (234)
..+.+.+++.++..++ ++.++|.+|.+.- |.. ..++.+ +.+ .+.+.|.+.|. .++++|||
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~f 241 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASY 241 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeee
Confidence 4588888888888664 8999999997763 221 011111 222 24456777887 45899998
No 29
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=55.31 E-value=6.5 Score=27.05 Aligned_cols=9 Identities=56% Similarity=1.357 Sum_probs=7.9
Q ss_pred cccccCccc
Q 026732 5 HCHFTGRNF 13 (234)
Q Consensus 5 ~~~~~~~~~ 13 (234)
-||||||.+
T Consensus 35 ~~hYtg~~V 43 (66)
T PF06174_consen 35 VCHYTGRDV 43 (66)
T ss_pred cccccCccc
Confidence 499999987
No 30
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=52.87 E-value=1.1e+02 Score=26.07 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeeecCCCccc---c-H--HHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHH
Q 026732 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP---A-E--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~---s-E--~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~a 181 (234)
.++++...+.+.+.+.|..|+=|+.-|++ + | +++.+.++ ++ +.++.... -.+.++..+-
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~-----v~IKaaGG------irt~~~a~~~ 193 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT-----IGVKASGG------VRTAEDAIAM 193 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC-----CeEEEeCC------CCCHHHHHHH
Confidence 46678889999999999999999977752 1 2 44444443 21 13333321 1267888888
Q ss_pred HHHHHHHcCCCc
Q 026732 182 IDVSRRRMDVPC 193 (234)
Q Consensus 182 l~~SL~rLg~dy 193 (234)
++.--.|+|+++
T Consensus 194 i~aGa~riGts~ 205 (211)
T TIGR00126 194 IEAGASRIGASA 205 (211)
T ss_pred HHHhhHHhCcch
Confidence 888889999864
No 31
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=51.71 E-value=1e+02 Score=27.57 Aligned_cols=68 Identities=9% Similarity=-0.067 Sum_probs=42.8
Q ss_pred ceeeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHh
Q 026732 155 EFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (234)
Q Consensus 155 ~v~~~~~~~tk~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (234)
++++++.+...-.-.....+++.+.+++.+.+++-+++.||+-.=+....+...+....++|.+|+++
T Consensus 69 kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~ 136 (294)
T cd06543 69 DVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE 136 (294)
T ss_pred eEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH
Confidence 66666665432111112458889999999999999999999854332211212245667777888776
No 32
>PRK05660 HemN family oxidoreductase; Provisional
Probab=50.26 E-value=2.1e+02 Score=26.39 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEee-CCC-------CCCcHHHHHH----HHHHHHHhCCcCeEEeccCC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-------SNPGYLDALN----HLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~-pd~-------~~~~~~e~~~----aL~~l~~~G~ir~IGvSN~~ 234 (234)
..+.+++++.++..++ ++.++|.+|.+-- |+. ..++.++.++ +.+.|.+.|. ..+++|||.
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa 242 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYA 242 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeeccccc
Confidence 3577888888887655 8888888886642 221 1121222222 2345666676 557888883
No 33
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=49.29 E-value=37 Score=29.80 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCc
Q 026732 169 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIG 225 (234)
Q Consensus 169 ~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~i 225 (234)
.....+.++.....+-..+-++++.|-|=.+..+.+-.|+..|++++-+.|+++|-+
T Consensus 69 TaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 69 TAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp -TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 344678888888888888989999888777777666667789999999999999964
No 34
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=47.78 E-value=1.3e+02 Score=26.66 Aligned_cols=78 Identities=10% Similarity=0.017 Sum_probs=51.4
Q ss_pred CCHH-HHHHHHHHHHHhCCCeeecCCCccc---c-H--HHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHH
Q 026732 108 IDRD-DAVDAMLRYADAGLTTFDMADHYGP---A-E--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (234)
Q Consensus 108 ~~~~-~~~~~l~~Al~~Gi~~fDTA~~YG~---s-E--~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~ 180 (234)
.+++ +...+.+.+.+.|.+|+=|+.-|++ + | +++-+.+++..-.. . +.+|.... -.+.++..+
T Consensus 143 L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~--~--vgIKAsGG------Irt~~~A~~ 212 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAK--T--VGFKPAGG------VRTAEDAAQ 212 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCC--C--eeEEccCC------CCCHHHHHH
Confidence 3455 4788999999999999999988853 2 2 44545553321011 1 23332221 236788888
Q ss_pred HHHHHHHHcCCCccc
Q 026732 181 SIDVSRRRMDVPCLD 195 (234)
Q Consensus 181 al~~SL~rLg~dyiD 195 (234)
-++.--+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 899989999998876
No 35
>PRK08609 hypothetical protein; Provisional
Probab=47.66 E-value=1.1e+02 Score=30.20 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCeeecCCCc
Q 026732 113 AVDAMLRYADAGLTTFDMADHY 134 (234)
Q Consensus 113 ~~~~l~~Al~~Gi~~fDTA~~Y 134 (234)
..++++.|.+.|++.|=.++++
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~ 372 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHS 372 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCC
Confidence 5559999999999999888775
No 36
>PRK08392 hypothetical protein; Provisional
Probab=47.41 E-value=1.7e+02 Score=24.52 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCeeecCCCc
Q 026732 112 DAVDAMLRYADAGLTTFDMADHY 134 (234)
Q Consensus 112 ~~~~~l~~Al~~Gi~~fDTA~~Y 134 (234)
...+.++.|.+.|++.+=.+++.
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~ 37 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHI 37 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC
Confidence 35678999999999988666654
No 37
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=47.20 E-value=1.9e+02 Score=25.24 Aligned_cols=112 Identities=15% Similarity=0.036 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCeeecCCCccccHHHHHHHHHhhhhcCCCceeeeEEeeccc-CCC-CCCCCHHHHHHHHHHHH---HHc
Q 026732 115 DAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKW-VPP-PVKMTSSIVRESIDVSR---RRM 189 (234)
Q Consensus 115 ~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~~r~~~~~v~~~~~~~tk~-~~~-~~~~s~~~i~~al~~SL---~rL 189 (234)
+++++|++.|...+..-..-...++ +-+.++++.-. .+........+. ... .+..-.+.+.+.+++.+ ++.
T Consensus 87 ~v~e~al~~G~~iINdisg~~~~~~-~~~l~~~~~~~---vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 162 (257)
T cd00739 87 EVARAALEAGADIINDVSGGSDDPA-MLEVAAEYGAP---LVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESA 162 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCChH-HHHHHHHcCCC---EEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence 4677888889888875432211133 33455543211 222111000000 000 01111234545555444 455
Q ss_pred CCC----cccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEecc
Q 026732 190 DVP----CLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRL 232 (234)
Q Consensus 190 g~d----yiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN 232 (234)
|++ ++|-.. .+........++++.++.+++.|.=--+|+||
T Consensus 163 Gi~~~~Ii~DPg~--gf~ks~~~~~~~l~~i~~l~~~~~pil~G~Sr 207 (257)
T cd00739 163 GVARNRIILDPGI--GFGKTPEHNLELLRRLDELKQLGLPVLVGASR 207 (257)
T ss_pred CCCHHHEEEecCC--CcccCHHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence 776 555421 11111112356788888999888777899997
No 38
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=46.93 E-value=2.2e+02 Score=26.39 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEee-CCC-----------CCCcHHH---HH-HHHHHHHHhCCcCeEEeccC
Q 026732 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNPGYLD---AL-NHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~dyiDl~~lH~-pd~-----------~~~~~~e---~~-~aL~~l~~~G~ir~IGvSN~ 233 (234)
.+.+++++.++..++ |+.++|.+|.+.- |.. ..++.++ .+ .+.+.|.+.|.. ++++|||
T Consensus 179 qt~e~~~~tl~~~~~-l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnf 253 (400)
T PRK07379 179 QTLEDWQASLEAAIA-LNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNY 253 (400)
T ss_pred CCHHHHHHHHHHHHc-CCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeehe
Confidence 467777777776553 7788888776652 211 0111122 22 244567777864 5888887
No 39
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=45.62 E-value=2.4e+02 Score=25.76 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCC-------------Cc---HHHHHHHHH-HHHHhCCcCeEEeccCC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-------------PG---YLDALNHLT-DLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~-------------~~---~~e~~~aL~-~l~~~G~ir~IGvSN~~ 234 (234)
..+.+++++.++..+ +++.+++.+|.+.- .+.+ ++ ..+.+..+. .|.+.|. ..+++|||.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~~-~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~s~fa 247 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALIV-EDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGF-DWYEVSNWA 247 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeeec-CCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCC-Ceeeecccc
Confidence 457888888888655 48999999887762 2111 11 123344443 3455566 568999983
No 40
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=44.29 E-value=1.5e+02 Score=24.69 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHhCCCeeecCCCccc------cHHHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHHH
Q 026732 109 DRDDAVDAMLRYADAGLTTFDMADHYGP------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (234)
Q Consensus 109 ~~~~~~~~l~~Al~~Gi~~fDTA~~YG~------sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~al 182 (234)
++++...+.+.+.|+|..|+=|+.-|.+ .-+.+.+.++ . .+ .++..... + +.+++.+-+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~---~v--~ik~aGGi-----k-t~~~~l~~~ 193 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----G---RV--GVKAAGGI-----R-TLEDALAMI 193 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----C---Cc--eEEEeCCC-----C-CHHHHHHHH
Confidence 5678888888999999999999866641 2255555553 2 11 23322211 1 567777777
Q ss_pred HHHHHHcCC
Q 026732 183 DVSRRRMDV 191 (234)
Q Consensus 183 ~~SL~rLg~ 191 (234)
+.-..|+|+
T Consensus 194 ~~g~~riG~ 202 (203)
T cd00959 194 EAGATRIGT 202 (203)
T ss_pred HhChhhccC
Confidence 766677765
No 41
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=43.70 E-value=1.9e+02 Score=24.08 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCCCeeecCC--Cccc----cHHHHHHHHHhhhhcCCCceeeeEE--eecccCCCCCCCCHHHHHHHH
Q 026732 111 DDAVDAMLRYADAGLTTFDMAD--HYGP----AEDLYGIFINRVRRERPPEFLDKVR--GLTKWVPPPVKMTSSIVRESI 182 (234)
Q Consensus 111 ~~~~~~l~~Al~~Gi~~fDTA~--~YG~----sE~~lG~al~~~~r~~~~~v~~~~~--~~tk~~~~~~~~s~~~i~~al 182 (234)
+.+.+++-.++..|-..+=+.. .|.+ +++++|++.++ |+..+.+.+++- ..|-+. .+++++.+ +
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~e--R~~lpaIaLt~dsS~lTai~---NDy~yd~v---F 99 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKE--RPSLPAIALSTDSSVLTAIA---NDYGYDEV---F 99 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhc--CCCCCeeEeecccHHHhhhh---ccccHHHH---H
Confidence 3556677778888888774432 1112 57788887766 333323433321 122222 26777765 5
Q ss_pred HHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEec
Q 026732 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLR 231 (234)
Q Consensus 183 ~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS 231 (234)
.+..+.+|. .=|++.==++..+. ..++++++..++.|.. -||++
T Consensus 100 sRqveA~g~-~GDvLigISTSGNS---~nVl~Ai~~Ak~~gm~-vI~lt 143 (176)
T COG0279 100 SRQVEALGQ-PGDVLIGISTSGNS---KNVLKAIEAAKEKGMT-VIALT 143 (176)
T ss_pred HHHHHhcCC-CCCEEEEEeCCCCC---HHHHHHHHHHHHcCCE-EEEEe
Confidence 555667874 46877666666543 5789999999999974 35554
No 42
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=43.45 E-value=62 Score=27.02 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=55.0
Q ss_pred HhCCCeeecCC--------Cc-cccHHHHHHHHHhhhhcCCCceeeeEEeecccCCC-----CCCCCHHHHHHHHHHHHH
Q 026732 122 DAGLTTFDMAD--------HY-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP-----PVKMTSSIVRESIDVSRR 187 (234)
Q Consensus 122 ~~Gi~~fDTA~--------~Y-G~sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~-----~~~~s~~~i~~al~~SL~ 187 (234)
.++|-|+||-. .| |..+.++-..|+..+- ++.+=+.--+.|... ++.-++..+..-|++.|+
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~----DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~ 153 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRF----DLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLE 153 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHhhccc----ceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHH
Confidence 55999999943 33 3244555566654322 232222212333222 234467788888899998
Q ss_pred HcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhC
Q 026732 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEA 223 (234)
Q Consensus 188 rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G 223 (234)
+.+..|+- |-.+++... +..++++.+++..++
T Consensus 154 ~~~~~~v~---i~~~~y~eR-~~~~~~aV~ell~~~ 185 (187)
T COG3172 154 ENNIPFVV---IEGEDYLER-YLQAVEAVEELLGEK 185 (187)
T ss_pred HhCCcEEE---EcCCCHHHH-HHHHHHHHHHHHhcc
Confidence 88877654 344443333 566788888887766
No 43
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=40.94 E-value=1.2e+02 Score=26.87 Aligned_cols=58 Identities=12% Similarity=-0.020 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc------CCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCc
Q 026732 168 PPPVKMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIG 225 (234)
Q Consensus 168 ~~~~~~s~~~i~~al~~SL~rL------g~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~i 225 (234)
+....++.++-.+..+-..+-+ +++.|-|=.+..+.+-.|+..|++++-+.|.++|-+
T Consensus 76 NTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 76 NTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred cCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 4444667766666665556655 577777666667777777789999999999999964
No 44
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=39.69 E-value=2.6e+02 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHhCCCeeecC
Q 026732 109 DRDDAVDAMLRYADAGLTTFDMA 131 (234)
Q Consensus 109 ~~~~~~~~l~~Al~~Gi~~fDTA 131 (234)
+.++..++++.-.+.||..++..
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG 42 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELT 42 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 56888899999899999999985
No 45
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=39.22 E-value=2.3e+02 Score=26.75 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEE-eeCCC----------CCCcHHHHH----HHHHHHHHhCCcCeEEeccC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDY----------SNPGYLDAL----NHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~l-H~pd~----------~~~~~~e~~----~aL~~l~~~G~ir~IGvSN~ 233 (234)
..+.+++.+.++..+ +++.+.|.+|.+ |-|.. ..++.++.+ .+.+.|.+.|. ..++++||
T Consensus 215 gqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~f 289 (453)
T PRK13347 215 HQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHF 289 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccce
Confidence 358888888888766 589999999865 33321 112223322 34466778887 45899998
No 46
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=38.20 E-value=1.7e+02 Score=27.56 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEE-eeCC----------CCCCcHHH---HHH-HHHHHHHhCCcCeEEeccC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQF-HWWD----------YSNPGYLD---ALN-HLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~l-H~pd----------~~~~~~~e---~~~-aL~~l~~~G~ir~IGvSN~ 233 (234)
..+.+.+++.++..++ ++.++|.+|.+ +.|. ...++.++ .++ +.+.|.+.|. ..+++|||
T Consensus 214 gqt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~f 288 (455)
T TIGR00538 214 KQTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHF 288 (455)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccce
Confidence 4588888888887655 89999999866 2221 01121222 223 3345556675 67999998
No 47
>PRK06740 histidinol-phosphatase; Validated
Probab=38.11 E-value=3.1e+02 Score=24.89 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCcccEEEEeeCCC---CCCc-------------HHHHHHHHHHHHHhCCcCeEE
Q 026732 180 ESIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEAIGVQVK 229 (234)
Q Consensus 180 ~al~~SL~rLg~dyiDl~~lH~pd~---~~~~-------------~~e~~~aL~~l~~~G~ir~IG 229 (234)
..++..|+....||+ +..+|+.+. ..+. +++-++.+.++.+.|++..||
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg 220 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIA 220 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 345566666777877 788898541 1111 122446777888899888776
No 48
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=37.79 E-value=65 Score=28.41 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=37.9
Q ss_pred CCCcccccceeccccCCCCCCCC---CHHHHHHHHHH----HHHhCCCeeecCC--Cc-cc-cHHHHHHHHHh
Q 026732 86 NDSLEICRVLNGMWQTSGGWGRI---DRDDAVDAMLR----YADAGLTTFDMAD--HY-GP-AEDLYGIFINR 147 (234)
Q Consensus 86 ~tg~~Vs~lglGt~~~g~~~~~~---~~~~~~~~l~~----Al~~Gi~~fDTA~--~Y-G~-sE~~lG~al~~ 147 (234)
.+|+.+|.++|.+.+-.. +|+. ..+++.++++. |.+.||+.|--|- +| .+ +|+-..+++.+
T Consensus 65 etgv~ipSmClSaHRRfP-fGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g 136 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFP-FGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEG 136 (287)
T ss_pred HhCCCccchhhhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHH
Confidence 578999999997754321 2332 23455555555 4589999998874 33 22 55556666654
No 49
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=37.61 E-value=2.8e+02 Score=24.27 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHh--CCcCeEEeccC
Q 026732 209 YLDALNHLTDLKEE--AIGVQVKLRLL 233 (234)
Q Consensus 209 ~~e~~~aL~~l~~~--G~ir~IGvSN~ 233 (234)
..++++.++.+++. |.=--+|+||-
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~ 199 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNI 199 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 55778999999998 88889999994
No 50
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=37.13 E-value=3.2e+02 Score=24.78 Aligned_cols=61 Identities=8% Similarity=0.112 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEee-CCCC-------CCcHHHHH-HHHHHHHHhCCcCeEEeccCC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDYS-------NPGYLDAL-NHLTDLKEEAIGVQVKLRLLL 234 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~-pd~~-------~~~~~e~~-~aL~~l~~~G~ir~IGvSN~~ 234 (234)
..+.+.+++.++..+ +++.++|.+|.+.- |... .++-++.+ .+.+.|.+.|. ..+++|||.
T Consensus 161 gqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa 230 (350)
T PRK08446 161 LDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFG 230 (350)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhh
Confidence 357788888887755 48888888887653 2210 01122333 33456667785 579999983
No 51
>PRK10508 hypothetical protein; Provisional
Probab=35.04 E-value=68 Score=29.19 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc
Q 026732 173 MTSSIVRESIDVSRRRMDVPCL 194 (234)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~dyi 194 (234)
-+|+.|.+.+++..+++|+|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del 307 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI 307 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE
Confidence 5899999999999999998887
No 52
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.95 E-value=2.9e+02 Score=24.19 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCeeecCCCc--c---ccHHHHHHHHHh
Q 026732 105 WGRIDRDDAVDAMLRYADAGLTTFDMADHY--G---PAEDLYGIFINR 147 (234)
Q Consensus 105 ~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~Y--G---~sE~~lG~al~~ 147 (234)
-|+.+.++..++++.|.+.|++-+=..++| | ++++.+.+.+.+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 356688999999999999999976555555 2 244555554443
No 53
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=34.87 E-value=3.5e+02 Score=25.37 Aligned_cols=60 Identities=15% Similarity=-0.073 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEee-CCCC-----CCcHH---HHH-HHHHHHHHhCCcCeEEeccC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDYS-----NPGYL---DAL-NHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~-pd~~-----~~~~~---e~~-~aL~~l~~~G~ir~IGvSN~ 233 (234)
..+.+.+++.++..+ +|+.++|.+|.+.- |... .++.+ +.+ .+.+.|.+.|. +.+++|||
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~f 273 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMF 273 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecce
Confidence 458888888888876 48999999887653 1110 01111 222 34456677775 56999988
No 54
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=34.54 E-value=2.4e+02 Score=25.71 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEee-CCC-----------CCCcHHH---H-HHHHHHHHHhCCcCeEEeccC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNPGYLD---A-LNHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~-pd~-----------~~~~~~e---~-~~aL~~l~~~G~ir~IGvSN~ 233 (234)
..+.+++++.++.. .+++.+++.+|.+.- |+. ..++.+. . -.+.+.|.+.|. ..+++|||
T Consensus 163 gqt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~f 238 (377)
T PRK08599 163 GQTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNF 238 (377)
T ss_pred CCCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeee
Confidence 35778888888764 558888888885532 210 0111111 2 235566777786 56899887
No 55
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=34.00 E-value=3e+02 Score=25.51 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=13.6
Q ss_pred CCHHHHHHHHH-------HHHHhCCCeee
Q 026732 108 IDRDDAVDAML-------RYADAGLTTFD 129 (234)
Q Consensus 108 ~~~~~~~~~l~-------~Al~~Gi~~fD 129 (234)
.+.+|..++++ .|.++|+.-++
T Consensus 139 mt~~eI~~ii~~f~~AA~rA~~AGFDgVE 167 (363)
T COG1902 139 LTEEEIEEVIEDFARAARRAKEAGFDGVE 167 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 56666555554 45688987554
No 56
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=33.78 E-value=84 Score=24.49 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHh
Q 026732 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (234)
Q Consensus 180 ~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (234)
..+++.|+.+....+|+++++..|.-..+..+....++.|.+.
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 4455555555445677777777664333355666666666665
No 57
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=33.30 E-value=2e+02 Score=26.44 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=48.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcC
Q 026732 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGV 226 (234)
Q Consensus 167 ~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir 226 (234)
++....++.++..+..+-..+-++++.|-|=.+.......++..+++++.++|.++|..-
T Consensus 141 pNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v 200 (326)
T PRK11840 141 PNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQV 200 (326)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEE
Confidence 344457788888888888888889998887777766656667899999999999999865
No 58
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=33.29 E-value=2.3e+02 Score=24.05 Aligned_cols=102 Identities=9% Similarity=-0.031 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHH
Q 026732 106 GRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (234)
Q Consensus 106 ~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~al~~S 185 (234)
+..+.++..++.+.|.+.|+.-+-..+.| -+...+.|+. . .+.+.+.+. | |.. ....+.-...+++.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~---v~~a~~~l~~---~---~v~v~tVig--F-P~G-~~~~~~K~~E~~~A 79 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSY---VPLAKELLKG---T---EVRICTVVG--F-PLG-ASTTDVKLYETKEA 79 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHH---HHHHHHHcCC---C---CCeEEEEeC--C-CCC-CCcHHHHHHHHHHH
Confidence 34678999999999999988766544333 2333333421 1 222222222 2 222 22333334444555
Q ss_pred HHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHh
Q 026732 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (234)
Q Consensus 186 L~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (234)
++ +|.|-||++.-...-.+.. +....+.+.++++.
T Consensus 80 v~-~GAdEiDvv~n~g~l~~g~-~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 80 IK-YGADEVDMVINIGALKDGN-EEVVYDDIRAVVEA 114 (211)
T ss_pred HH-cCCCEEEeecchHhhhCCc-HHHHHHHHHHHHHH
Confidence 54 7999999886654322333 67777777777765
No 59
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.01 E-value=3.2e+02 Score=23.50 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHh
Q 026732 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINR 147 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~ 147 (234)
.+.+++.++.+..++.|++.+.-+..=-.+.+.+.+..+.
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~ 63 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKY 63 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHH
Confidence 3789999999999999999998765433356666554433
No 60
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=32.92 E-value=12 Score=29.30 Aligned_cols=11 Identities=45% Similarity=1.078 Sum_probs=9.5
Q ss_pred cccccccCccc
Q 026732 3 AMHCHFTGRNF 13 (234)
Q Consensus 3 ~~~~~~~~~~~ 13 (234)
.|.|||||+-.
T Consensus 31 ~M~Ch~tg~a~ 41 (124)
T PF14387_consen 31 HMKCHWTGQAV 41 (124)
T ss_pred eeeehhHHHHH
Confidence 68999999865
No 61
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=32.47 E-value=3.8e+02 Score=24.29 Aligned_cols=23 Identities=13% Similarity=-0.051 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccE
Q 026732 173 MTSSIVRESIDVSRRRMDVPCLDM 196 (234)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~dyiDl 196 (234)
.+.+...+-++ -|+..|+|+|++
T Consensus 221 ~~~~e~~~i~~-~Le~~G~d~i~v 243 (353)
T cd02930 221 STWEEVVALAK-ALEAAGADILNT 243 (353)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEe
Confidence 45555544444 367788888876
No 62
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.55 E-value=3.1e+02 Score=22.96 Aligned_cols=108 Identities=6% Similarity=0.070 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeeecC-CCccc-cHHHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHH
Q 026732 108 IDRDDAVDAMLRYADAGLTTFDMA-DHYGP-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gi~~fDTA-~~YG~-sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~al~~S 185 (234)
.+.++..++++...+.||..|+.. +..++ ..+.+.+..+..+.. .+ .. .. +...+.++.+++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~---~~--~~--~~-------~~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNA---RL--QA--LC-------RANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSS---EE--EE--EE-------ESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccc---cc--ce--ee-------eehHHHHHHHHHhh
Confidence 577888999999899999999998 44443 234454444433221 11 11 11 12455666666543
Q ss_pred HHHcCCCcccEEEEeeCC-----CCCC---cHHHHHHHHHHHHHhCCcCeEEe
Q 026732 186 RRRMDVPCLDMLQFHWWD-----YSNP---GYLDALNHLTDLKEEAIGVQVKL 230 (234)
Q Consensus 186 L~rLg~dyiDl~~lH~pd-----~~~~---~~~e~~~aL~~l~~~G~ir~IGv 230 (234)
...|.+.+.++.-=++. .... .++.+.+.++..++.|....+++
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~ 128 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC 128 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc
Confidence 45777777655322210 0000 03345555666677777666665
No 63
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=31.08 E-value=2.6e+02 Score=23.88 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeecCCCcc---ccHHHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHHHH
Q 026732 107 RIDRDDAVDAMLRYADAGLTTFDMADHYG---PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (234)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG---~sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~al~ 183 (234)
..++++..++.+.+.+.|..|+=|+.-|+ .+.+.+....+.. .. .+ .++.... -.+.++..+-++
T Consensus 132 ~L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~---~~--~IKasGG------Irt~~~a~~~i~ 199 (221)
T PRK00507 132 LLTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GP---RV--GVKASGG------IRTLEDALAMIE 199 (221)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CC---Cc--eEEeeCC------cCCHHHHHHHHH
Confidence 35677888888889999999998888773 2344443322222 12 22 2232221 125566666666
Q ss_pred HHHHHcCCC
Q 026732 184 VSRRRMDVP 192 (234)
Q Consensus 184 ~SL~rLg~d 192 (234)
.--.|+|+.
T Consensus 200 aGA~riGtS 208 (221)
T PRK00507 200 AGATRLGTS 208 (221)
T ss_pred cCcceEccC
Confidence 555566653
No 64
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=30.28 E-value=1.1e+02 Score=23.12 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCC
Q 026732 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAI 224 (234)
Q Consensus 179 ~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ 224 (234)
+..+++.|+.+....+|.+++..++.-.....+....++.|.+.|.
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi 96 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHGV 96 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCCC
Confidence 4555555655554567888888777543335566666677766653
No 65
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=29.69 E-value=31 Score=28.17 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=40.0
Q ss_pred cccccceeccccCC---CCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHH
Q 026732 89 LEICRVLNGMWQTS---GGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFI 145 (234)
Q Consensus 89 ~~Vs~lglGt~~~g---~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al 145 (234)
+.+||+|.=| | ..||..+.++..++++.+++-=.++-|-.++-|.+|..+|.+.
T Consensus 75 ID~SPMGCrT---GFYm~l~G~~~~~~i~~~~~~~m~dvl~~~~~~~IP~~ne~qCG~y~ 131 (161)
T COG1854 75 IDISPMGCRT---GFYMILIGTPTSQDIADVLEATMKDVLKVQDQEEIPGANEKQCGNYK 131 (161)
T ss_pred EEecCccccc---ceEEEEECCCCHHHHHHHHHHHHHHHHcccccccCCccChhhccchh
Confidence 5577776533 3 1468888899999999999776667677777787888888665
No 66
>PRK05588 histidinol-phosphatase; Provisional
Probab=27.94 E-value=3.9e+02 Score=22.87 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCCeeecCCCccc--c-H----HHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHHHH
Q 026732 111 DDAVDAMLRYADAGLTTFDMADHYGP--A-E----DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (234)
Q Consensus 111 ~~~~~~l~~Al~~Gi~~fDTA~~YG~--s-E----~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~al~ 183 (234)
....+.+++|.+.|+..+ .+++.-. . + .-+-+.+++..+-+..++...+- . ++-++ -....+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE----~-----~~~~~-~~~~~~ 84 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIE----L-----GMEKD-LIEENK 84 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEE----e-----cccCC-CHHHHH
Confidence 346789999999999988 7766310 0 0 01112222211100002211111 1 11222 345567
Q ss_pred HHHHHcCCCcccEEEEeeCCCCC---------CcHHHH----HHHHHHHHH-hCCcCeEE
Q 026732 184 VSRRRMDVPCLDMLQFHWWDYSN---------PGYLDA----LNHLTDLKE-EAIGVQVK 229 (234)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~pd~~~---------~~~~e~----~~aL~~l~~-~G~ir~IG 229 (234)
+.|++...||+ +..+|+.+... .+.++. ++.+.++.+ .|++.-||
T Consensus 85 ~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 85 ELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 77887888877 78999854211 012333 356666666 46665554
No 67
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=27.82 E-value=2.1e+02 Score=22.45 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEecc
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRL 232 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN 232 (234)
..+.+.+...+++..+.- -+.-.+=..|...+ ++.+.+.|..+++.|. ..|++..
T Consensus 80 ~v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~-~~~vv~vmd~l~~aG~-~~v~l~t 134 (141)
T PRK11267 80 PVTDETMITALDALTEGK----KDTTIFFRADKTVD-YETLMKVMDTLHQAGY-LKIGLVG 134 (141)
T ss_pred cccHHHHHHHHHHHHhcC----CCceEEEEcCCCCC-HHHHHHHHHHHHHcCC-CeEEEEe
Confidence 345566666666544322 23333344566677 9999999999999995 4577653
No 68
>PRK11024 colicin uptake protein TolR; Provisional
Probab=27.07 E-value=2e+02 Score=22.53 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEec
Q 026732 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLR 231 (234)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS 231 (234)
.+.+.+...++..++.- -|...+=..|...+ ++.+.+.|+.+++.|. ..|++.
T Consensus 85 v~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~-~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKAN----PKTVFLIGGAKDVP-YDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhhC----CCceEEEEcCCCCC-HHHHHHHHHHHHHcCC-CeEEEE
Confidence 45566666666554432 24444455677777 9999999999999995 446653
No 69
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=26.64 E-value=1.2e+02 Score=29.55 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEec
Q 026732 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLR 231 (234)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS 231 (234)
..-+|+.+.|+|.+ .++++|+++..++.+++|+...||+-
T Consensus 193 ri~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~ 232 (545)
T TIGR01228 193 RIDKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLL 232 (545)
T ss_pred HHHHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEee
Confidence 33468888899866 34489999999999999999999973
No 70
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=26.60 E-value=73 Score=24.80 Aligned_cols=109 Identities=14% Similarity=0.062 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCeeecCCCccc------cHHHHHHHHHhhhhcCCCceeeeEEeeccc-CCCCCCCCHHHHHHHHH
Q 026732 111 DDAVDAMLRYADAGLTTFDMADHYGP------AEDLYGIFINRVRRERPPEFLDKVRGLTKW-VPPPVKMTSSIVRESID 183 (234)
Q Consensus 111 ~~~~~~l~~Al~~Gi~~fDTA~~YG~------sE~~lG~al~~~~r~~~~~v~~~~~~~tk~-~~~~~~~s~~~i~~al~ 183 (234)
+++.+++..+++.|-+.| .+|. ++++..++....+..+. ..-.+.+.+.. .....+...+ ....+
T Consensus 22 ~~aa~~i~~~~~~gg~i~----~~G~G~S~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~--~~~~~ 93 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIF----VCGNGHSAAIASHFAADLGGLFGVNRI--LLPAIALNDDALTAISNDLEYD--EGFAR 93 (138)
T ss_dssp HHHHHHHHHHHHTT--EE----EEESTHHHHHHHHHHHHHHCHSSSTSS--S-SEEETTSTHHHHHHHHTTGG--GTHHH
T ss_pred HHHHHHHHHHHHCCCEEE----EEcCchhhhHHHHHHHHHhcCcCCCcc--cccccccccchHhhhhcccchh--hHHHH
Confidence 467788888899999877 3342 57777777754333221 11111111110 0000001111 11223
Q ss_pred HHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEec
Q 026732 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLR 231 (234)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS 231 (234)
..++......=|++++.+...+++ -++++++..++.|.. -||++
T Consensus 94 ~~~~~~~~~~gDvli~iS~SG~s~---~vi~a~~~Ak~~G~~-vIalT 137 (138)
T PF13580_consen 94 QLLALYDIRPGDVLIVISNSGNSP---NVIEAAEEAKERGMK-VIALT 137 (138)
T ss_dssp HHHHHTT--TT-EEEEEESSS-SH---HHHHHHHHHHHTT-E-EEEEE
T ss_pred HHHHHcCCCCCCEEEEECCCCCCH---HHHHHHHHHHHCCCE-EEEEe
Confidence 333344567889999999876655 678888999999974 46664
No 71
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=26.34 E-value=90 Score=27.75 Aligned_cols=46 Identities=11% Similarity=-0.112 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHcCCCccc--EEE-EeeCCCCCCcHHHHHHHHHHHHHhCCcC
Q 026732 176 SIVRESIDVSRRRMDVPCLD--MLQ-FHWWDYSNPGYLDALNHLTDLKEEAIGV 226 (234)
Q Consensus 176 ~~i~~al~~SL~rLg~dyiD--l~~-lH~pd~~~~~~~e~~~aL~~l~~~G~ir 226 (234)
+...+.+++.+++||++ .| .++ -+.+ .-.+.+.+.+++|+++|.|-
T Consensus 82 ~~~~~~~~~~l~~lgI~-~Dw~~~~~T~~~----~~~~~v~~~f~~L~~~G~iY 130 (312)
T cd00668 82 EEMSGEHKEDFRRLGIS-YDWSDEYITTEP----EYSKAVELIFSRLYEKGLIY 130 (312)
T ss_pred HHHHHHHHHHHHHhCcc-ccCCCCeECCCH----HHHHHHHHHHHHHHHCCCEE
Confidence 46678888899999985 44 332 2322 12567889999999999874
No 72
>PRK05414 urocanate hydratase; Provisional
Probab=26.32 E-value=1.2e+02 Score=29.59 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=32.5
Q ss_pred HHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEe
Q 026732 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKL 230 (234)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGv 230 (234)
..-+|+.+.|+|.+ .++++|+++..++.+++|+...||+
T Consensus 202 ri~kR~~~gyld~~--------~~~Ldeal~~~~~a~~~~~~~SIg~ 240 (556)
T PRK05414 202 RIDKRLRTGYLDEK--------ADDLDEALALAEEAKAAGEPLSIGL 240 (556)
T ss_pred HHHHHHhCCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEE
Confidence 34468888899976 3448999999999999999999997
No 73
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=26.28 E-value=1.7e+02 Score=21.77 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhC
Q 026732 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEA 223 (234)
Q Consensus 180 ~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G 223 (234)
..+++.++.+. ..|.+.+++.+.-.....+.+..++.+.+.|
T Consensus 43 ~~~~~ll~~~~--~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~g 84 (126)
T cd03768 43 PELQKLLEDLR--EGDTLVVTKLDRLGRSTKDLLEIVEELREKG 84 (126)
T ss_pred HHHHHHHHhCc--CCCEEEEEEcchhcCcHHHHHHHHHHHHHCC
Confidence 34444444443 4666666666643333455666666666655
No 74
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=25.94 E-value=1e+02 Score=27.61 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCc
Q 026732 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIG 225 (234)
Q Consensus 176 ~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~i 225 (234)
+...+.+++.+++||++ +|.+.-. . +......+.+.+++|+++|.+
T Consensus 69 ~~~~~~~~~~l~~LgI~-~D~~~~t--t-~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 69 DKYHEIFKDLFKWLNIS-FDYFIRT--T-SPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHcCCc-CCCCeeC--C-CHHHHHHHHHHHHHHHHCCCE
Confidence 45678889999999996 6854322 1 111145678888999999998
No 75
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=25.83 E-value=4.2e+02 Score=22.62 Aligned_cols=101 Identities=9% Similarity=0.024 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHHH
Q 026732 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (234)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~al~~SL 186 (234)
..++++..++.+.|.+.|+.-+-..+.|= ....+.|+. . .+.+.+.+. + |.. ....+.-....++.+
T Consensus 18 ~~t~~~i~~~~~~A~~~~~~avcv~p~~v---~~a~~~l~~---~---~v~v~tVig--F-P~G-~~~~~~K~~e~~~Ai 84 (221)
T PRK00507 18 EATEEDIDKLCDEAKEYGFASVCVNPSYV---KLAAELLKG---S---DVKVCTVIG--F-PLG-ANTTAVKAFEAKDAI 84 (221)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHHH---HHHHHHhCC---C---CCeEEEEec--c-cCC-CChHHHHHHHHHHHH
Confidence 46789999999999998887665554432 222333321 1 222222222 1 221 112222223334433
Q ss_pred HHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHh
Q 026732 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (234)
Q Consensus 187 ~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (234)
+ .|.+-||++ +........+++.+.+.+.++++.
T Consensus 85 ~-~GA~EiD~V-in~~~~~~g~~~~v~~ei~~v~~~ 118 (221)
T PRK00507 85 A-NGADEIDMV-INIGALKSGDWDAVEADIRAVVEA 118 (221)
T ss_pred H-cCCceEeee-ccHHHhcCCCHHHHHHHHHHHHHh
Confidence 3 788999954 454333444477888888888774
No 76
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.75 E-value=3.8e+02 Score=23.37 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=76.4
Q ss_pred EEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHhhhhcCCCc--eee
Q 026732 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPE--FLD 158 (234)
Q Consensus 81 ~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~~r~~~~~--v~~ 158 (234)
-++||. |+.++.|.+ +-+..++-..--.++.+-=++++|.+.- |=.+|.-+.++|++...-.++. .++
T Consensus 18 DkrLGG-GiP~GsL~l----IEGd~~tGKSvLsqr~~YG~L~~g~~v~-----yvsTe~T~refi~qm~sl~ydv~~~~l 87 (235)
T COG2874 18 DKRLGG-GIPVGSLIL----IEGDNGTGKSVLSQRFAYGFLMNGYRVT-----YVSTELTVREFIKQMESLSYDVSDFLL 87 (235)
T ss_pred HhhccC-CCccCeEEE----EECCCCccHHHHHHHHHHHHHhCCceEE-----EEEechhHHHHHHHHHhcCCCchHHHh
Confidence 356654 677776654 1122222222334455555678887643 3337888888887642222210 010
Q ss_pred e--EE-eecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCC---CC--cHHHHHHHHHHHHHhCCcCeEEe
Q 026732 159 K--VR-GLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NP--GYLDALNHLTDLKEEAIGVQVKL 230 (234)
Q Consensus 159 ~--~~-~~tk~~~~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~---~~--~~~e~~~aL~~l~~~G~ir~IGv 230 (234)
. .. +.... .+....+..-+.-++..++....-.-|++.+.+.+.- .+ .+.+-+..+..+.++||+--+-+
T Consensus 88 ~G~l~~~~~~~--~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTv 165 (235)
T COG2874 88 SGRLLFFPVNL--EPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTV 165 (235)
T ss_pred cceeEEEEecc--cccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 0 01 11111 2345566777777777777777777888888876531 11 24556667777888999865544
No 77
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=25.67 E-value=4.8e+02 Score=23.26 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhCCcCeEEecc
Q 026732 209 YLDALNHLTDLKEEAIGVQVKLRL 232 (234)
Q Consensus 209 ~~e~~~aL~~l~~~G~ir~IGvSN 232 (234)
..+.++.|+++++.|.=--+|+|+
T Consensus 197 n~~ll~~l~~l~~lg~Pilvg~SR 220 (282)
T PRK11613 197 NYQLLARLAEFHHFNLPLLVGMSR 220 (282)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecc
Confidence 457888889999999888899995
No 78
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=24.96 E-value=2.9e+02 Score=24.66 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=12.0
Q ss_pred HHHHHHHhCCCeeec
Q 026732 116 AMLRYADAGLTTFDM 130 (234)
Q Consensus 116 ~l~~Al~~Gi~~fDT 130 (234)
-+..=++.|||+||-
T Consensus 35 ~i~~QL~~GiRyfDl 49 (281)
T cd08620 35 NVSTQLALGARYFDF 49 (281)
T ss_pred cHHHHHhcCcEEEEE
Confidence 356667899999987
No 79
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=24.85 E-value=28 Score=23.76 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHHHHHhhh
Q 026732 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVR 149 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~al~~~~ 149 (234)
.+++.-.++|..++..|.+.-+.|..||-+...|..|++.+.
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 367788889999999999999999999999999999998873
No 80
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=24.32 E-value=1.4e+02 Score=23.96 Aligned_cols=39 Identities=18% Similarity=-0.080 Sum_probs=30.5
Q ss_pred CCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEeccC
Q 026732 191 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 191 ~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN~ 233 (234)
.+.=|++.+-+...++ .++.++++.+++.| ++-|++++.
T Consensus 99 ~~~~Dv~I~iS~SG~t---~~~i~~~~~ak~~G-a~vI~IT~~ 137 (177)
T cd05006 99 GQPGDVLIGISTSGNS---PNVLKALEAAKERG-MKTIALTGR 137 (177)
T ss_pred CCCCCEEEEEeCCCCC---HHHHHHHHHHHHCC-CEEEEEeCC
Confidence 3456888887766554 48889999999999 788999875
No 81
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.09 E-value=5e+02 Score=22.90 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeecCCCcc
Q 026732 107 RIDRDDAVDAMLRYADAGLTTFDMADHYG 135 (234)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG 135 (234)
+.+++...++++.+.+.|++.|--++..|
T Consensus 143 r~~~~~~~~~~~~~~~~G~~~i~l~DT~G 171 (280)
T cd07945 143 RDSPDYVFQLVDFLSDLPIKRIMLPDTLG 171 (280)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 34667777777777777777664444444
No 82
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.51 E-value=5.7e+02 Score=23.33 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeecCCCccccHHHHHH-----------------HHHhhhhcCCCceeeeEEeecccCCCC
Q 026732 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGI-----------------FINRVRRERPPEFLDKVRGLTKWVPPP 170 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~sE~~lG~-----------------al~~~~r~~~~~v~~~~~~~tk~~~~~ 170 (234)
.+.+....+.+++-+.|+.||=|.-.-. +-+++-+ .|+...+... -+++++.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~-svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gk-PvilStG--------- 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE-SADFLEDLGVPRFKIPSGEITNAPLLKKIARFGK-PVILSTG--------- 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH-HHHHHHhcCCCEEEECcccccCHHHHHHHHhcCC-cEEEECC---------
Confidence 5778889999999999999986643111 1111111 0111111111 1222211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCC-CCCcHHH-HHHHHHHHHHhCCcCeEEeccC
Q 026732 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLD-ALNHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 171 ~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~-~~~~~~e-~~~aL~~l~~~G~ir~IGvSN~ 233 (234)
-.+.+.++.+++...+ -|.+.-|+.++|+... ..+ .++ -+.++..|++.=. .-||+|..
T Consensus 142 -matl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~-~~~~nL~~I~~Lk~~f~-~pVG~SdH 202 (329)
T TIGR03569 142 -MATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAP-FEDVNLNAMDTLKEAFD-LPVGYSDH 202 (329)
T ss_pred -CCCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCC-cccCCHHHHHHHHHHhC-CCEEECCC
Confidence 2367889999988753 4543226899999652 222 222 2455555555432 36888864
No 83
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=23.40 E-value=3.2e+02 Score=20.39 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEEeeCC
Q 026732 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWD 203 (234)
Q Consensus 175 ~~~i~~al~~SL~rLg~dyiDl~~lH~pd 203 (234)
.+.+.+.+++.+++.+ .|+++.|++.
T Consensus 85 ~~~~~~~l~~~i~~~~---p~~V~t~~~~ 110 (128)
T PF02585_consen 85 WEELVRDLEDLIREFR---PDVVFTPDPD 110 (128)
T ss_dssp HHHHHHHHHHHHHHH----ESEEEEE-ST
T ss_pred HHHHHHHHHHHHHHcC---CCEEEECCCC
Confidence 3444444444444443 2444444443
No 84
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.30 E-value=1.7e+02 Score=24.79 Aligned_cols=56 Identities=9% Similarity=-0.060 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhC-CcCeEE
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEA-IGVQVK 229 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G-~ir~IG 229 (234)
.++.+...+-++. |.++|+++|++-..-.+... +..++.++.++++.+.+ .++...
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~ 71 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQA 71 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEE
Confidence 4577777766665 66789888888766544221 22345566777777777 344333
No 85
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=23.24 E-value=5e+02 Score=22.58 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=32.9
Q ss_pred HHHHHHHHHHH---HHcCCCcccEEEEee--CCCCCCcHHHHHHHHHHHHHhCCcCeEEecc
Q 026732 176 SIVRESIDVSR---RRMDVPCLDMLQFHW--WDYSNPGYLDALNHLTDLKEEAIGVQVKLRL 232 (234)
Q Consensus 176 ~~i~~al~~SL---~rLg~dyiDl~~lH~--pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN 232 (234)
+.+.+.+++.+ ++.|++.-|+++=-- +........++++.++++++.|.=--+|+||
T Consensus 144 ~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~Sr 205 (257)
T TIGR01496 144 EEVLRFLEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASR 205 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence 44445555544 556887555553111 1111112346778888888888656799997
No 86
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=22.31 E-value=90 Score=31.32 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=30.7
Q ss_pred HHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcC
Q 026732 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGV 226 (234)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir 226 (234)
.|+.||++ |++-+++.|+.. .+....||++|+..|-+.
T Consensus 414 ~Lkalgi~--d~l~F~f~d~P~--~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 414 QLKALGIN--DPLRFPFIDPPP--PEALEEALEELYSLGALD 451 (674)
T ss_pred HHHhcCCC--CcccCCCCCCCC--hHHHHHHHHHHHhcCccc
Confidence 47889987 999999988643 477888999999888664
No 87
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=22.24 E-value=6.6e+02 Score=23.62 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEe-eCC----------CCCCcHHH---HH-HHHHHHHHhCCcCeEEeccC
Q 026732 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFH-WWD----------YSNPGYLD---AL-NHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~dyiDl~~lH-~pd----------~~~~~~~e---~~-~aL~~l~~~G~ir~IGvSN~ 233 (234)
..+.+.+++.++..++ ++.+++.+|.+- -|. ...++.++ .+ .+.+.|.+.|... +++|||
T Consensus 214 gqt~e~~~~~l~~~~~-l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~f 288 (453)
T PRK09249 214 KQTPESFARTLEKVLE-LRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHF 288 (453)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-Eeccce
Confidence 4578888888887664 899999988653 111 11122222 22 3344566777654 888887
No 88
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=22.14 E-value=6e+02 Score=23.05 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEe
Q 026732 173 MTSSIVRESIDVSRRRMDVPCLDMLQFH 200 (234)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~dyiDl~~lH 200 (234)
.+.+++++.++..+ +++.+++.+|.+.
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 46666666666654 3677777776544
No 89
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=21.51 E-value=3.8e+02 Score=24.50 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHhC---CCeeecCCCccccHHHHHHHHHhhhhcCCCceeeeEEeecccCCCCCCCCHHHHHHHHHH
Q 026732 108 IDRDDAVDAMLRYADAG---LTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~G---i~~fDTA~~YG~sE~~lG~al~~~~r~~~~~v~~~~~~~tk~~~~~~~~s~~~i~~al~~ 184 (234)
.++++..+++....+.- +-.+|..+..+.-...+-+.+. ... .+ .+.+|..-.+.....+.+.+.+++
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~----~~p-ii----lV~NK~DLl~k~~~~~~~~~~l~~ 118 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG----GNP-VL----LVGNKIDLLPKSVNLSKIKEWMKK 118 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC----CCC-EE----EEEEchhhCCCCCCHHHHHHHHHH
Confidence 45666666666654321 2355765555431122222221 111 22 245554322223456677777777
Q ss_pred HHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEeccC
Q 026732 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLL 233 (234)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSN~ 233 (234)
.++..|....|++.+-.-. ... +++.++.|.++.+.+.+--+|.+|.
T Consensus 119 ~~k~~g~~~~~i~~vSAk~-g~g-v~eL~~~l~~~~~~~~v~~vG~~nv 165 (360)
T TIGR03597 119 RAKELGLKPVDIILVSAKK-GNG-IDELLDKIKKARNKKDVYVVGVTNV 165 (360)
T ss_pred HHHHcCCCcCcEEEecCCC-CCC-HHHHHHHHHHHhCCCeEEEECCCCC
Confidence 7777886545666655433 233 7888888888766667778888873
No 90
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=21.03 E-value=1.2e+02 Score=27.42 Aligned_cols=46 Identities=9% Similarity=-0.099 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCC--CcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcC
Q 026732 177 IVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGV 226 (234)
Q Consensus 177 ~i~~al~~SL~rLg~--dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir 226 (234)
...+.+.+.+++||+ ++-.-+.-+.+ .-.+.+.+.+.+|+++|.|-
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~~T~~~----~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPYKTMDP----EYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCeECCCH----HHHHHHHHHHHHHHHCCCEe
Confidence 456777788899997 43333322221 12567889999999999874
No 91
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=20.83 E-value=1.9e+02 Score=23.98 Aligned_cols=35 Identities=11% Similarity=-0.055 Sum_probs=25.6
Q ss_pred cccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeE
Q 026732 193 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQV 228 (234)
Q Consensus 193 yiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~I 228 (234)
.-+|.+++....+.. -.+-++.|.+++.+|++|++
T Consensus 77 sn~l~lv~~~~rNp~-S~~hvq~l~~l~nqg~Lr~~ 111 (173)
T PF10171_consen 77 SNDLLLVSPAIRNPT-SDKHVQRLMRLRNQGRLRYL 111 (173)
T ss_pred hCceeccChhhcCch-HHHHHHHHHHHhcCCceEEe
Confidence 356677775443333 56778999999999999975
No 92
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.80 E-value=6.4e+02 Score=22.91 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeecC
Q 026732 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (234)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gi~~fDTA 131 (234)
.+.++..++++...+.||..|+..
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 367888899999899999999983
No 93
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.43 E-value=2.1e+02 Score=21.89 Aligned_cols=17 Identities=6% Similarity=-0.109 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhCCCee
Q 026732 112 DAVDAMLRYADAGLTTF 128 (234)
Q Consensus 112 ~~~~~l~~Al~~Gi~~f 128 (234)
+...+-+.|.++|+...
T Consensus 20 Q~~~~~~~a~~~g~~i~ 36 (148)
T smart00857 20 QLEALRAYAKANGWEVV 36 (148)
T ss_pred HHHHHHHHHHHCCCEEE
Confidence 33444555566676643
No 94
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=20.41 E-value=86 Score=21.74 Aligned_cols=13 Identities=23% Similarity=0.140 Sum_probs=9.7
Q ss_pred cch--hhhhhhhhHH
Q 026732 17 SLS--TFLPLLSIVQ 29 (234)
Q Consensus 17 ~~~--~~~~~~~~~~ 29 (234)
++| .|||.|+...
T Consensus 8 ~~sRR~Flk~lg~~a 22 (66)
T TIGR02811 8 DPSRRDLLKGLGVGA 22 (66)
T ss_pred CccHHHHHHHHHHHH
Confidence 455 8999988743
No 95
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=20.25 E-value=1.4e+02 Score=22.36 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHhCCCeeecCCCcc
Q 026732 109 DRDDAVDAMLRYADAGLTTFDMADHYG 135 (234)
Q Consensus 109 ~~~~~~~~l~~Al~~Gi~~fDTA~~YG 135 (234)
+.+...+....+++.|+..||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 566788888999999999999999885
No 96
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=34 Score=25.87 Aligned_cols=7 Identities=43% Similarity=1.023 Sum_probs=5.9
Q ss_pred ccccccC
Q 026732 4 MHCHFTG 10 (234)
Q Consensus 4 ~~~~~~~ 10 (234)
.||||||
T Consensus 23 vt~hYtg 29 (108)
T KOG0544|consen 23 VTVHYTG 29 (108)
T ss_pred EEEEEEe
Confidence 5899997
No 97
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=20.04 E-value=54 Score=24.36 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEE
Q 026732 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVK 229 (234)
Q Consensus 181 al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IG 229 (234)
.+=.-|.+.|.||.=.+.-.. ..+ .+++.+.|++|.+.|++..+.
T Consensus 11 ~IL~hl~~~~~Dy~k~ia~~l---~~~-~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 11 KILQHLKKAGPDYAKSIARRL---KIP-LEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHCCCcHHHHHHHH---CCC-HHHHHHHHHHHHHCCCeEEec
Confidence 344445566777655443332 344 889999999999999998764
No 98
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=20.03 E-value=4.1e+02 Score=20.67 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHcC
Q 026732 175 SSIVRESIDVSRRRMD 190 (234)
Q Consensus 175 ~~~i~~al~~SL~rLg 190 (234)
..++.+..+...++|+
T Consensus 40 ~~~~~~~~~~v~~~l~ 55 (135)
T cd00419 40 PDQCEETARLVAERLG 55 (135)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4455555555555555
Done!