Query 026733
Match_columns 234
No_of_seqs 150 out of 1394
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 8.4E-32 1.8E-36 249.2 20.4 233 1-233 249-481 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 1.2E-28 2.6E-33 225.1 21.1 233 1-233 173-405 (474)
3 PLN02612 phytoene desaturase 99.9 7.4E-26 1.6E-30 210.8 21.4 210 1-233 262-471 (567)
4 TIGR02731 phytoene_desat phyto 99.9 4.8E-23 1E-27 187.3 20.3 209 1-233 167-380 (453)
5 TIGR03467 HpnE squalene-associ 99.8 3.3E-18 7.1E-23 153.0 18.9 199 1-233 150-349 (419)
6 PRK07233 hypothetical protein; 99.8 2.8E-17 6E-22 147.9 19.6 205 1-234 150-360 (434)
7 PRK07208 hypothetical protein; 99.7 7.1E-16 1.5E-20 141.1 21.8 208 1-231 151-386 (479)
8 COG3349 Uncharacterized conser 99.7 2E-16 4.3E-21 142.2 10.1 224 1-233 168-392 (485)
9 TIGR02733 desat_CrtD C-3',4' d 99.7 3.5E-15 7.6E-20 137.2 18.1 202 11-234 200-411 (492)
10 COG1232 HemY Protoporphyrinoge 99.6 2.1E-14 4.6E-19 129.1 15.8 200 1-232 153-374 (444)
11 TIGR02730 carot_isom carotene 99.5 1.7E-13 3.7E-18 126.1 15.7 196 13-234 200-411 (493)
12 PRK12416 protoporphyrinogen ox 99.5 3.1E-13 6.7E-18 123.3 17.2 201 1-232 164-389 (463)
13 PRK11883 protoporphyrinogen ox 99.5 6.5E-13 1.4E-17 120.3 16.8 202 1-232 159-381 (451)
14 TIGR02734 crtI_fam phytoene de 99.5 1.6E-12 3.4E-17 119.9 18.3 202 12-234 190-410 (502)
15 TIGR00562 proto_IX_ox protopor 99.5 2.2E-12 4.7E-17 117.5 17.0 202 1-232 155-388 (462)
16 PLN02576 protoporphyrinogen ox 99.5 4.7E-12 1E-16 116.5 18.2 210 1-232 164-412 (496)
17 KOG4254 Phytoene desaturase [C 99.4 1.5E-11 3.2E-16 108.8 16.5 187 33-234 251-462 (561)
18 PF01593 Amino_oxidase: Flavin 99.1 5.2E-11 1.1E-15 105.6 6.0 204 2-232 163-372 (450)
19 COG1233 Phytoene dehydrogenase 99.1 3.9E-10 8.5E-15 103.8 9.9 178 38-234 216-401 (487)
20 PLN03000 amine oxidase 98.7 2.2E-07 4.8E-12 89.8 12.7 154 40-232 375-539 (881)
21 PRK13977 myosin-cross-reactive 98.7 1.6E-07 3.6E-12 87.1 10.8 102 7-109 182-290 (576)
22 PLN02676 polyamine oxidase 98.7 3.5E-07 7.6E-12 84.3 12.6 163 42-232 220-394 (487)
23 PLN02529 lysine-specific histo 98.6 9.2E-07 2E-11 84.8 14.9 155 39-232 350-515 (738)
24 PLN02268 probable polyamine ox 98.6 1.2E-06 2.7E-11 79.3 14.1 152 52-233 202-357 (435)
25 PLN02328 lysine-specific histo 98.6 1.5E-06 3.2E-11 84.0 14.6 156 38-232 429-595 (808)
26 PLN02568 polyamine oxidase 98.5 1.7E-06 3.7E-11 80.7 14.0 168 41-232 237-421 (539)
27 COG1231 Monoamine oxidase [Ami 98.5 2.8E-06 6E-11 76.1 13.3 162 42-233 205-368 (450)
28 PLN02976 amine oxidase 98.4 5.8E-06 1.3E-10 83.3 13.6 161 41-232 931-1105(1713)
29 KOG0029 Amine oxidase [Seconda 98.4 6.5E-06 1.4E-10 76.0 12.7 188 7-232 183-378 (501)
30 COG2907 Predicted NAD/FAD-bind 98.3 3.3E-06 7.2E-11 73.2 9.3 130 1-144 170-303 (447)
31 PTZ00363 rab-GDP dissociation 98.2 1.6E-05 3.5E-10 72.4 10.5 67 36-110 222-288 (443)
32 KOG0685 Flavin-containing amin 97.8 7E-05 1.5E-09 67.5 7.0 150 62-233 244-404 (498)
33 PF06100 Strep_67kDa_ant: Stre 97.7 0.00061 1.3E-08 62.1 11.4 104 5-109 161-271 (500)
34 KOG1276 Protoporphyrinogen oxi 97.5 0.0015 3.4E-08 58.4 11.8 139 2-148 175-343 (491)
35 PF01266 DAO: FAD dependent ox 97.5 0.00034 7.5E-09 60.7 7.2 56 48-112 148-203 (358)
36 TIGR03377 glycerol3P_GlpA glyc 97.3 0.011 2.4E-07 55.0 15.6 65 48-117 129-197 (516)
37 COG2509 Uncharacterized FAD-de 97.3 0.0008 1.7E-08 60.6 6.9 56 48-111 174-229 (486)
38 COG3380 Predicted NAD/FAD-depe 97.2 0.00047 1E-08 58.3 4.5 92 50-150 107-200 (331)
39 PF03486 HI0933_like: HI0933-l 97.1 0.0012 2.6E-08 59.7 6.8 64 39-110 101-164 (409)
40 TIGR02352 thiamin_ThiO glycine 97.1 0.0021 4.5E-08 55.7 7.6 57 48-113 138-194 (337)
41 COG2081 Predicted flavoprotein 97.0 0.0019 4.2E-08 57.3 6.6 61 40-109 104-164 (408)
42 PF00996 GDI: GDP dissociation 96.9 0.0094 2E-07 54.3 10.1 81 18-107 201-284 (438)
43 TIGR03378 glycerol3P_GlpB glyc 96.8 0.0038 8.2E-08 56.5 7.0 64 47-118 263-328 (419)
44 PF00890 FAD_binding_2: FAD bi 96.7 0.0067 1.5E-07 54.6 8.2 58 47-109 141-200 (417)
45 PRK00711 D-amino acid dehydrog 96.7 0.007 1.5E-07 54.3 7.8 56 48-112 202-257 (416)
46 COG0579 Predicted dehydrogenas 96.6 0.0079 1.7E-07 54.5 7.6 63 48-118 154-219 (429)
47 PRK06134 putative FAD-binding 96.4 0.012 2.7E-07 55.5 8.2 57 48-110 218-276 (581)
48 PRK11101 glpA sn-glycerol-3-ph 96.4 0.017 3.7E-07 54.2 8.8 65 48-117 150-218 (546)
49 TIGR02485 CobZ_N-term precorri 96.3 0.018 3.9E-07 52.2 8.0 57 48-109 124-180 (432)
50 PRK07121 hypothetical protein; 96.3 0.018 3.9E-07 53.2 8.1 59 48-110 178-237 (492)
51 TIGR03862 flavo_PP4765 unchara 96.2 0.015 3.3E-07 51.9 7.0 63 39-111 78-140 (376)
52 PRK08274 tricarballylate dehyd 96.1 0.024 5.1E-07 52.0 8.1 57 48-109 132-189 (466)
53 PRK12844 3-ketosteroid-delta-1 96.1 0.021 4.6E-07 53.7 7.7 57 46-109 207-266 (557)
54 PRK12835 3-ketosteroid-delta-1 96.1 0.022 4.8E-07 53.9 7.9 57 47-109 213-272 (584)
55 PRK12843 putative FAD-binding 96.1 0.024 5.2E-07 53.6 8.0 57 47-110 221-280 (578)
56 PRK12842 putative succinate de 96.0 0.027 5.9E-07 53.1 8.1 56 48-109 215-272 (574)
57 TIGR01813 flavo_cyto_c flavocy 96.0 0.029 6.3E-07 50.9 8.0 58 48-110 131-190 (439)
58 PRK12845 3-ketosteroid-delta-1 96.0 0.03 6.6E-07 52.8 8.0 56 47-109 217-275 (564)
59 PRK07843 3-ketosteroid-delta-1 96.0 0.028 6.1E-07 52.9 7.8 57 46-109 207-266 (557)
60 PRK06481 fumarate reductase fl 95.9 0.032 7E-07 51.8 8.0 56 48-109 191-248 (506)
61 PTZ00383 malate:quinone oxidor 95.9 0.032 7E-07 51.8 7.8 56 48-112 212-273 (497)
62 TIGR01816 sdhA_forward succina 95.8 0.05 1.1E-06 51.3 9.0 59 47-110 119-179 (565)
63 PRK07573 sdhA succinate dehydr 95.8 0.047 1E-06 52.3 8.5 55 51-110 174-230 (640)
64 PRK06847 hypothetical protein; 95.7 0.48 1E-05 41.7 14.5 63 48-119 108-172 (375)
65 PRK06175 L-aspartate oxidase; 95.7 0.064 1.4E-06 48.8 9.0 57 47-110 128-187 (433)
66 COG0654 UbiH 2-polyprenyl-6-me 95.7 0.13 2.8E-06 46.0 10.8 63 48-118 105-169 (387)
67 PLN02464 glycerol-3-phosphate 95.7 0.052 1.1E-06 51.9 8.5 67 48-118 233-304 (627)
68 TIGR01320 mal_quin_oxido malat 95.6 0.052 1.1E-06 50.2 8.1 65 48-117 179-247 (483)
69 PRK09078 sdhA succinate dehydr 95.6 0.063 1.4E-06 51.0 8.8 60 47-110 149-210 (598)
70 TIGR00275 flavoprotein, HI0933 95.6 0.051 1.1E-06 48.9 7.8 60 42-111 100-159 (400)
71 TIGR03197 MnmC_Cterm tRNA U-34 95.6 0.024 5.1E-07 50.5 5.6 55 48-112 136-190 (381)
72 PF13738 Pyr_redox_3: Pyridine 95.6 0.031 6.8E-07 44.8 5.8 55 47-110 82-136 (203)
73 PRK05329 anaerobic glycerol-3- 95.6 0.06 1.3E-06 49.0 8.0 63 48-118 260-324 (422)
74 PRK12839 hypothetical protein; 95.5 0.064 1.4E-06 50.7 8.4 58 47-109 214-273 (572)
75 COG1252 Ndh NADH dehydrogenase 95.5 0.033 7.2E-07 50.2 6.0 59 45-116 207-269 (405)
76 PF00732 GMC_oxred_N: GMC oxid 95.5 0.05 1.1E-06 46.5 6.9 61 53-116 199-262 (296)
77 TIGR01812 sdhA_frdA_Gneg succi 95.4 0.082 1.8E-06 49.8 8.7 59 48-111 130-190 (566)
78 PRK11728 hydroxyglutarate oxid 95.4 0.061 1.3E-06 48.1 7.4 61 48-118 150-212 (393)
79 PRK05675 sdhA succinate dehydr 95.4 0.09 1.9E-06 49.7 8.8 60 47-110 126-187 (570)
80 TIGR01811 sdhA_Bsu succinate d 95.3 0.099 2.1E-06 49.7 8.9 59 47-109 129-193 (603)
81 TIGR01373 soxB sarcosine oxida 95.3 0.083 1.8E-06 47.3 8.1 62 48-117 184-247 (407)
82 PRK13369 glycerol-3-phosphate 95.2 1 2.2E-05 41.8 15.1 58 48-112 156-215 (502)
83 PRK06452 sdhA succinate dehydr 95.1 0.1 2.2E-06 49.2 8.5 60 47-111 136-197 (566)
84 PRK12837 3-ketosteroid-delta-1 95.1 0.091 2E-06 48.9 7.9 55 48-109 174-232 (513)
85 PRK07057 sdhA succinate dehydr 95.0 0.14 3.1E-06 48.5 9.2 60 47-110 148-209 (591)
86 KOG1336 Monodehydroascorbate/f 95.0 0.049 1.1E-06 49.5 5.6 68 44-118 252-319 (478)
87 PRK04176 ribulose-1,5-biphosph 95.0 0.096 2.1E-06 44.3 7.1 60 48-111 105-172 (257)
88 TIGR03329 Phn_aa_oxid putative 95.0 0.08 1.7E-06 48.5 7.1 53 48-111 184-236 (460)
89 PRK05945 sdhA succinate dehydr 94.9 0.16 3.4E-06 48.0 9.1 60 47-111 135-196 (575)
90 PRK05257 malate:quinone oxidor 94.9 0.12 2.6E-06 48.0 8.1 60 48-112 184-246 (494)
91 PF00070 Pyr_redox: Pyridine n 94.9 0.095 2.1E-06 35.8 5.7 42 44-91 37-78 (80)
92 TIGR01377 soxA_mon sarcosine o 94.9 0.098 2.1E-06 46.2 7.2 54 48-111 146-199 (380)
93 PRK08275 putative oxidoreducta 94.8 0.15 3.2E-06 48.1 8.5 60 48-111 138-199 (554)
94 PRK08958 sdhA succinate dehydr 94.8 0.16 3.5E-06 48.2 8.8 60 47-110 143-204 (588)
95 PTZ00139 Succinate dehydrogena 94.8 0.16 3.6E-06 48.4 8.8 59 47-109 166-226 (617)
96 PRK06263 sdhA succinate dehydr 94.7 0.14 3E-06 48.0 8.2 60 47-110 134-195 (543)
97 PRK12409 D-amino acid dehydrog 94.7 0.14 3E-06 45.9 7.8 58 48-112 198-258 (410)
98 TIGR02374 nitri_red_nirB nitri 94.7 0.099 2.1E-06 51.3 7.3 56 47-111 182-237 (785)
99 PRK09564 coenzyme A disulfide 94.7 0.12 2.6E-06 46.9 7.4 57 45-111 189-245 (444)
100 PRK07333 2-octaprenyl-6-methox 94.6 0.16 3.5E-06 45.2 8.1 62 48-118 112-174 (403)
101 PRK14989 nitrite reductase sub 94.6 0.12 2.6E-06 51.1 7.7 58 47-111 187-244 (847)
102 PRK04965 NADH:flavorubredoxin 94.6 0.14 3.1E-06 45.5 7.5 54 48-110 184-237 (377)
103 PTZ00318 NADH dehydrogenase-li 94.5 0.11 2.3E-06 47.2 6.5 53 45-110 226-278 (424)
104 PRK10157 putative oxidoreducta 94.5 0.15 3.3E-06 46.3 7.5 58 49-115 110-168 (428)
105 PLN00128 Succinate dehydrogena 94.4 0.23 4.9E-06 47.6 8.8 60 47-110 187-248 (635)
106 PRK06116 glutathione reductase 94.4 0.15 3.3E-06 46.4 7.3 57 46-110 207-263 (450)
107 PRK08773 2-octaprenyl-3-methyl 94.3 0.18 3.8E-06 45.0 7.5 62 48-118 114-176 (392)
108 PRK10015 oxidoreductase; Provi 94.3 0.22 4.8E-06 45.3 8.2 54 50-112 111-164 (429)
109 PRK07512 L-aspartate oxidase; 94.2 0.13 2.9E-06 47.8 6.8 57 48-110 137-195 (513)
110 TIGR02032 GG-red-SF geranylger 94.2 0.27 5.8E-06 41.4 8.1 63 48-118 92-155 (295)
111 PRK13339 malate:quinone oxidor 94.2 0.22 4.8E-06 46.2 8.1 60 48-112 185-247 (497)
112 PRK08626 fumarate reductase fl 94.2 0.22 4.8E-06 47.9 8.2 58 48-110 159-218 (657)
113 PRK05714 2-octaprenyl-3-methyl 94.2 0.19 4.1E-06 45.0 7.4 62 48-118 113-175 (405)
114 PRK08205 sdhA succinate dehydr 94.2 0.22 4.7E-06 47.2 8.1 63 47-111 140-205 (583)
115 PRK12266 glpD glycerol-3-phosp 94.0 0.25 5.4E-06 46.0 8.1 59 48-112 156-216 (508)
116 PF06039 Mqo: Malate:quinone o 94.0 0.29 6.2E-06 44.8 8.1 62 48-114 182-246 (488)
117 TIGR00551 nadB L-aspartate oxi 94.0 0.22 4.9E-06 46.0 7.8 59 48-111 129-188 (488)
118 PRK11259 solA N-methyltryptoph 94.0 0.19 4.1E-06 44.3 7.0 55 48-112 150-204 (376)
119 PRK07804 L-aspartate oxidase; 93.8 0.25 5.4E-06 46.4 7.8 61 47-111 144-209 (541)
120 TIGR01984 UbiH 2-polyprenyl-6- 93.8 0.25 5.4E-06 43.7 7.5 62 48-118 106-169 (382)
121 TIGR01423 trypano_reduc trypan 93.8 0.22 4.9E-06 46.1 7.4 57 46-110 230-286 (486)
122 TIGR00292 thiazole biosynthesi 93.8 0.29 6.4E-06 41.3 7.5 68 48-118 101-177 (254)
123 PRK08401 L-aspartate oxidase; 93.8 0.25 5.4E-06 45.4 7.6 55 47-111 120-174 (466)
124 PRK06854 adenylylsulfate reduc 93.8 0.32 6.9E-06 46.3 8.4 58 48-110 133-193 (608)
125 PLN02507 glutathione reductase 93.7 0.24 5.3E-06 46.0 7.5 58 45-111 242-299 (499)
126 PRK05249 soluble pyridine nucl 93.6 0.24 5.2E-06 45.3 7.2 57 46-111 215-271 (461)
127 PF01134 GIDA: Glucose inhibit 93.6 0.26 5.7E-06 44.3 7.2 54 48-110 96-150 (392)
128 PRK06184 hypothetical protein; 93.6 0.4 8.6E-06 44.4 8.6 64 49-118 111-175 (502)
129 PRK12834 putative FAD-binding 93.6 0.3 6.5E-06 45.9 7.9 57 48-109 149-224 (549)
130 TIGR01988 Ubi-OHases Ubiquinon 93.6 0.28 6.2E-06 43.2 7.4 62 48-118 107-170 (385)
131 PRK06834 hypothetical protein; 93.6 0.27 5.8E-06 45.6 7.4 62 48-118 101-163 (488)
132 PRK07395 L-aspartate oxidase; 93.6 0.27 5.9E-06 46.3 7.5 59 47-110 134-195 (553)
133 PRK07494 2-octaprenyl-6-methox 93.5 0.67 1.4E-05 41.1 9.7 62 48-118 112-174 (388)
134 PRK06416 dihydrolipoamide dehy 93.5 0.29 6.2E-06 44.8 7.5 56 47-111 213-271 (462)
135 PRK09754 phenylpropionate diox 93.5 0.3 6.5E-06 43.8 7.4 54 48-111 187-240 (396)
136 TIGR01350 lipoamide_DH dihydro 93.5 0.33 7.1E-06 44.3 7.8 56 47-111 211-268 (461)
137 PRK01747 mnmC bifunctional tRN 93.5 0.18 4E-06 48.4 6.4 55 48-112 409-463 (662)
138 TIGR02053 MerA mercuric reduct 93.5 0.33 7.1E-06 44.4 7.8 59 47-111 207-265 (463)
139 TIGR01421 gluta_reduc_1 glutat 93.4 0.34 7.3E-06 44.3 7.7 59 45-111 205-264 (450)
140 COG0578 GlpA Glycerol-3-phosph 93.3 0.27 5.8E-06 45.9 6.8 86 48-147 165-254 (532)
141 PRK07803 sdhA succinate dehydr 93.2 0.43 9.3E-06 45.7 8.3 59 47-110 138-211 (626)
142 PRK06370 mercuric reductase; V 93.2 0.45 9.7E-06 43.6 8.2 58 48-111 213-270 (463)
143 PRK06069 sdhA succinate dehydr 93.0 0.47 1E-05 44.9 8.2 59 48-111 138-199 (577)
144 PF13454 NAD_binding_9: FAD-NA 92.9 0.24 5.1E-06 38.5 5.2 94 8-110 50-155 (156)
145 TIGR03385 CoA_CoA_reduc CoA-di 92.9 0.32 7E-06 43.9 6.8 54 47-111 179-232 (427)
146 TIGR01424 gluta_reduc_2 glutat 92.9 0.35 7.6E-06 44.1 7.0 57 46-111 206-262 (446)
147 PRK06185 hypothetical protein; 92.9 0.66 1.4E-05 41.5 8.7 65 48-118 109-176 (407)
148 PRK14694 putative mercuric red 92.9 0.4 8.7E-06 44.0 7.4 55 47-111 218-272 (468)
149 PRK06115 dihydrolipoamide dehy 92.7 0.5 1.1E-05 43.4 7.9 59 47-111 215-275 (466)
150 TIGR00031 UDP-GALP_mutase UDP- 92.7 0.77 1.7E-05 41.2 8.7 87 11-114 160-249 (377)
151 PRK07845 flavoprotein disulfid 92.7 0.41 8.9E-06 44.0 7.2 55 48-111 219-273 (466)
152 PRK07045 putative monooxygenas 92.6 0.57 1.2E-05 41.6 7.9 61 49-116 108-170 (388)
153 PRK07190 hypothetical protein; 92.6 0.53 1.1E-05 43.6 7.9 61 49-118 111-172 (487)
154 PRK10262 thioredoxin reductase 92.5 0.36 7.9E-06 41.8 6.3 59 48-111 186-247 (321)
155 TIGR01292 TRX_reduct thioredox 92.4 0.57 1.2E-05 39.6 7.4 54 48-111 58-111 (300)
156 PF04820 Trp_halogenase: Trypt 92.4 0.52 1.1E-05 43.3 7.5 57 48-112 155-211 (454)
157 PRK05976 dihydrolipoamide dehy 92.3 0.55 1.2E-05 43.1 7.6 58 47-111 221-280 (472)
158 KOG1439 RAB proteins geranylge 92.3 0.68 1.5E-05 41.5 7.6 87 14-109 197-286 (440)
159 TIGR03169 Nterm_to_SelD pyridi 92.3 0.4 8.7E-06 42.2 6.4 51 48-111 192-242 (364)
160 PRK08020 ubiF 2-octaprenyl-3-m 92.2 0.59 1.3E-05 41.5 7.5 62 48-118 113-176 (391)
161 TIGR02462 pyranose_ox pyranose 92.2 0.52 1.1E-05 44.3 7.2 67 49-118 216-286 (544)
162 TIGR01316 gltA glutamate synth 92.2 2 4.3E-05 39.3 10.9 56 51-110 313-385 (449)
163 PRK08071 L-aspartate oxidase; 92.0 0.57 1.2E-05 43.7 7.4 56 48-110 131-188 (510)
164 PRK09077 L-aspartate oxidase; 92.0 0.96 2.1E-05 42.4 8.8 62 48-111 139-206 (536)
165 TIGR01810 betA choline dehydro 92.0 0.28 6.1E-06 45.8 5.3 46 58-110 205-253 (532)
166 PRK07818 dihydrolipoamide dehy 92.0 0.72 1.6E-05 42.3 7.9 57 48-111 214-272 (466)
167 PRK09897 hypothetical protein; 91.9 0.65 1.4E-05 43.6 7.6 55 48-110 108-164 (534)
168 TIGR01438 TGR thioredoxin and 91.8 0.64 1.4E-05 43.0 7.4 61 45-111 218-278 (484)
169 PRK08641 sdhA succinate dehydr 91.8 0.84 1.8E-05 43.3 8.3 60 47-110 133-198 (589)
170 PRK06475 salicylate hydroxylas 91.8 0.94 2E-05 40.5 8.3 65 48-118 108-174 (400)
171 PTZ00052 thioredoxin reductase 91.8 0.63 1.4E-05 43.2 7.3 58 45-111 220-277 (499)
172 COG1251 NirB NAD(P)H-nitrite r 91.7 0.19 4E-06 48.3 3.7 52 50-110 190-241 (793)
173 PF12831 FAD_oxidored: FAD dep 91.7 0.052 1.1E-06 49.4 0.0 65 49-118 92-156 (428)
174 PF01494 FAD_binding_3: FAD bi 91.7 0.75 1.6E-05 39.6 7.3 65 48-118 112-179 (356)
175 TIGR03364 HpnW_proposed FAD de 91.6 0.47 1E-05 41.7 6.1 56 48-118 146-202 (365)
176 PRK07251 pyridine nucleotide-d 91.6 0.79 1.7E-05 41.6 7.6 53 48-110 199-251 (438)
177 PRK14727 putative mercuric red 91.6 0.71 1.5E-05 42.6 7.4 55 47-111 228-282 (479)
178 TIGR01292 TRX_reduct thioredox 91.5 0.93 2E-05 38.3 7.6 57 49-111 178-237 (300)
179 KOG2820 FAD-dependent oxidored 91.5 0.83 1.8E-05 40.2 7.1 65 48-119 154-218 (399)
180 PRK08010 pyridine nucleotide-d 91.4 0.71 1.5E-05 42.0 7.2 54 47-110 199-252 (441)
181 PRK09231 fumarate reductase fl 91.4 0.98 2.1E-05 42.8 8.2 58 48-110 134-194 (582)
182 TIGR01176 fum_red_Fp fumarate 91.2 1.1 2.4E-05 42.5 8.5 59 47-110 132-193 (580)
183 PRK06327 dihydrolipoamide dehy 91.2 0.89 1.9E-05 41.9 7.6 58 47-111 224-283 (475)
184 PRK06912 acoL dihydrolipoamide 91.1 0.95 2.1E-05 41.4 7.7 54 48-111 212-267 (458)
185 PRK11749 dihydropyrimidine deh 91.1 1 2.2E-05 41.2 7.9 56 51-111 315-386 (457)
186 PRK08244 hypothetical protein; 91.1 1.1 2.5E-05 41.2 8.3 63 49-118 102-166 (493)
187 PRK12810 gltD glutamate syntha 91.1 0.92 2E-05 41.8 7.6 53 53-110 335-398 (471)
188 PF07156 Prenylcys_lyase: Pren 91.1 0.61 1.3E-05 41.6 6.2 58 48-112 129-187 (368)
189 PLN02815 L-aspartate oxidase 91.1 0.87 1.9E-05 43.3 7.6 59 48-109 156-219 (594)
190 PRK08163 salicylate hydroxylas 91.1 0.92 2E-05 40.3 7.4 59 49-116 111-171 (396)
191 PRK13512 coenzyme A disulfide 91.0 0.66 1.4E-05 42.2 6.5 52 46-110 188-239 (438)
192 PRK12769 putative oxidoreducta 91.0 1 2.2E-05 43.3 8.0 57 51-111 510-583 (654)
193 PTZ00058 glutathione reductase 90.9 1 2.3E-05 42.5 7.8 59 46-111 277-335 (561)
194 TIGR01318 gltD_gamma_fam gluta 90.8 1.3 2.8E-05 40.8 8.3 55 52-110 325-396 (467)
195 PRK07608 ubiquinone biosynthes 90.7 1.1 2.3E-05 39.8 7.4 61 48-118 112-174 (388)
196 PRK07364 2-octaprenyl-6-methox 90.6 0.92 2E-05 40.6 7.1 65 48-118 122-188 (415)
197 PRK07588 hypothetical protein; 90.6 0.79 1.7E-05 40.8 6.6 59 49-117 105-164 (391)
198 COG0644 FixC Dehydrogenases (f 90.5 1.2 2.6E-05 39.9 7.7 63 48-118 96-159 (396)
199 PRK13748 putative mercuric red 90.4 1 2.2E-05 42.2 7.4 55 47-111 310-364 (561)
200 COG1249 Lpd Pyruvate/2-oxoglut 90.2 1.1 2.4E-05 41.1 7.2 63 45-116 212-277 (454)
201 TIGR03140 AhpF alkyl hydropero 90.1 1.2 2.7E-05 41.4 7.6 55 48-111 268-322 (515)
202 PRK09126 hypothetical protein; 89.9 1.4 3E-05 39.1 7.5 60 49-117 112-173 (392)
203 PTZ00306 NADH-dependent fumara 89.8 1.2 2.6E-05 45.7 7.9 62 48-109 545-617 (1167)
204 PRK08850 2-octaprenyl-6-methox 89.7 1.3 2.8E-05 39.7 7.2 61 49-118 113-175 (405)
205 PRK08013 oxidoreductase; Provi 89.5 1.3 2.8E-05 39.7 7.0 61 49-118 113-175 (400)
206 PRK12831 putative oxidoreducta 89.4 1.6 3.5E-05 40.1 7.7 53 55-111 326-395 (464)
207 PRK05732 2-octaprenyl-6-methox 89.3 1.6 3.5E-05 38.6 7.5 60 50-118 115-176 (395)
208 PRK08243 4-hydroxybenzoate 3-m 89.2 1.5 3.2E-05 39.2 7.2 65 48-119 104-171 (392)
209 TIGR03140 AhpF alkyl hydropero 89.1 1.8 4E-05 40.3 7.9 56 51-111 391-449 (515)
210 PLN02546 glutathione reductase 88.9 1.6 3.5E-05 41.2 7.5 59 45-111 291-349 (558)
211 KOG2844 Dimethylglycine dehydr 88.9 0.74 1.6E-05 44.0 5.0 56 48-112 188-243 (856)
212 PRK06126 hypothetical protein; 88.8 2.2 4.7E-05 39.9 8.3 64 49-118 128-195 (545)
213 PRK15317 alkyl hydroperoxide r 88.6 1.9 4.2E-05 40.1 7.7 54 48-110 267-320 (517)
214 PRK06996 hypothetical protein; 88.6 1.5 3.2E-05 39.2 6.8 63 48-117 116-181 (398)
215 TIGR01372 soxA sarcosine oxida 88.3 2 4.3E-05 43.4 8.1 57 49-111 353-410 (985)
216 PLN02697 lycopene epsilon cycl 88.3 1.9 4.2E-05 40.4 7.4 56 48-112 193-248 (529)
217 PRK08849 2-octaprenyl-3-methyl 88.0 1.7 3.7E-05 38.6 6.8 58 52-118 115-174 (384)
218 PRK12770 putative glutamate sy 87.8 2.2 4.8E-05 37.5 7.2 55 51-111 214-285 (352)
219 COG0446 HcaD Uncharacterized N 87.5 1.8 3.9E-05 38.2 6.6 56 47-110 178-235 (415)
220 COG0665 DadA Glycine/D-amino a 87.5 2.4 5.1E-05 37.4 7.3 55 48-112 157-212 (387)
221 PRK05192 tRNA uridine 5-carbox 87.4 2 4.3E-05 41.0 7.0 54 48-110 101-155 (618)
222 TIGR00136 gidA glucose-inhibit 87.2 2.1 4.5E-05 40.9 7.0 56 48-111 97-153 (617)
223 PRK08132 FAD-dependent oxidore 86.7 3.3 7.1E-05 38.8 8.1 62 50-118 128-192 (547)
224 PRK12809 putative oxidoreducta 86.6 3.3 7.1E-05 39.8 8.1 53 55-111 497-566 (639)
225 TIGR01790 carotene-cycl lycope 86.5 2.9 6.3E-05 37.0 7.3 56 48-112 86-141 (388)
226 KOG0404 Thioredoxin reductase 86.5 1.2 2.5E-05 37.2 4.3 71 38-119 61-131 (322)
227 KOG1335 Dihydrolipoamide dehyd 86.3 3.1 6.6E-05 37.5 7.1 65 41-110 246-312 (506)
228 PRK05868 hypothetical protein; 86.2 3.2 6.9E-05 36.9 7.4 50 59-117 116-166 (372)
229 TIGR02061 aprA adenosine phosp 86.1 3.8 8.3E-05 39.2 8.2 62 48-111 127-190 (614)
230 PRK06183 mhpA 3-(3-hydroxyphen 86.1 3.4 7.4E-05 38.6 7.8 63 50-119 116-182 (538)
231 PRK15317 alkyl hydroperoxide r 86.0 3.1 6.6E-05 38.8 7.5 56 51-111 390-448 (517)
232 PRK07538 hypothetical protein; 85.5 3.5 7.6E-05 37.0 7.4 65 49-117 104-171 (413)
233 PLN02463 lycopene beta cyclase 85.5 3.2 6.9E-05 38.1 7.2 54 48-111 115-168 (447)
234 TIGR03219 salicylate_mono sali 85.3 2 4.2E-05 38.6 5.7 58 49-117 107-165 (414)
235 PRK04965 NADH:flavorubredoxin 85.0 2.9 6.3E-05 37.1 6.6 47 53-111 64-110 (377)
236 PRK02106 choline dehydrogenase 84.9 1.4 3E-05 41.5 4.6 47 59-111 213-261 (560)
237 PLN02661 Putative thiazole syn 84.8 4.8 0.0001 35.8 7.6 59 48-111 173-243 (357)
238 TIGR02374 nitri_red_nirB nitri 84.7 1.5 3.3E-05 43.1 5.0 49 52-111 59-107 (785)
239 PRK07846 mycothione reductase; 84.7 3.7 8.1E-05 37.5 7.3 54 48-111 208-261 (451)
240 COG3075 GlpB Anaerobic glycero 84.2 1.9 4.2E-05 38.0 4.8 74 38-119 246-324 (421)
241 PRK06617 2-octaprenyl-6-methox 84.2 3.9 8.5E-05 36.2 7.0 61 48-118 105-167 (374)
242 PRK12778 putative bifunctional 84.1 3.9 8.6E-05 40.0 7.6 53 55-111 616-685 (752)
243 TIGR01989 COQ6 Ubiquinone bios 84.1 4 8.6E-05 37.1 7.2 64 49-118 119-190 (437)
244 PRK07236 hypothetical protein; 83.9 3.6 7.8E-05 36.5 6.7 50 61-119 112-163 (386)
245 PRK12775 putative trifunctiona 83.7 4.3 9.3E-05 41.2 7.7 54 54-111 616-685 (1006)
246 TIGR03452 mycothione_red mycot 83.6 4.2 9E-05 37.2 7.1 54 48-111 211-264 (452)
247 PRK13984 putative oxidoreducta 83.1 4.4 9.4E-05 38.5 7.2 50 57-111 472-537 (604)
248 PRK09754 phenylpropionate diox 83.0 3.7 7.9E-05 36.8 6.4 46 55-111 66-111 (396)
249 PRK09564 coenzyme A disulfide 83.0 3 6.5E-05 37.8 5.9 53 51-111 60-114 (444)
250 PRK06753 hypothetical protein; 82.8 6.2 0.00014 34.6 7.7 48 61-117 110-158 (373)
251 PLN02172 flavin-containing mon 82.6 5 0.00011 37.0 7.2 57 48-111 112-172 (461)
252 KOG2404 Fumarate reductase, fl 82.4 2.9 6.3E-05 36.8 5.1 57 48-110 140-204 (477)
253 TIGR03385 CoA_CoA_reduc CoA-di 81.9 5.5 0.00012 35.9 7.2 49 54-110 51-101 (427)
254 PRK13800 putative oxidoreducta 81.7 6.4 0.00014 39.4 8.1 59 47-110 139-203 (897)
255 PF07992 Pyr_redox_2: Pyridine 81.4 3.3 7.2E-05 32.7 5.0 55 52-111 63-121 (201)
256 TIGR03169 Nterm_to_SelD pyridi 81.1 2.8 6.1E-05 36.8 4.9 51 49-111 56-106 (364)
257 PRK06467 dihydrolipoamide dehy 80.8 6.7 0.00015 36.1 7.4 59 46-111 214-273 (471)
258 PRK12771 putative glutamate sy 80.2 8.1 0.00018 36.4 7.9 53 54-111 312-379 (564)
259 PRK06292 dihydrolipoamide dehy 80.1 6.1 0.00013 36.0 6.9 57 47-111 210-267 (460)
260 PF05834 Lycopene_cycl: Lycope 79.2 6.4 0.00014 35.0 6.5 54 48-111 88-141 (374)
261 PTZ00153 lipoamide dehydrogena 78.9 8.6 0.00019 37.2 7.6 60 48-111 354-426 (659)
262 TIGR02360 pbenz_hydroxyl 4-hyd 78.4 8.8 0.00019 34.3 7.2 64 49-119 105-171 (390)
263 KOG1346 Programmed cell death 78.2 2.2 4.9E-05 38.7 3.2 55 47-110 393-447 (659)
264 PRK14989 nitrite reductase sub 78.1 4.2 9.1E-05 40.4 5.4 49 52-111 64-112 (847)
265 PRK11445 putative oxidoreducta 77.8 11 0.00025 33.0 7.7 58 51-117 103-163 (351)
266 COG1635 THI4 Ribulose 1,5-bisp 76.5 12 0.00026 31.3 6.7 60 49-112 111-178 (262)
267 COG5044 MRS6 RAB proteins gera 75.9 5.3 0.00012 35.7 4.8 84 15-109 195-281 (434)
268 COG4716 Myosin-crossreactive a 75.8 4.6 0.0001 36.3 4.4 68 11-78 187-258 (587)
269 KOG0405 Pyridine nucleotide-di 75.6 6.6 0.00014 35.0 5.3 65 44-116 227-292 (478)
270 TIGR02023 BchP-ChlP geranylger 75.6 13 0.00029 32.9 7.6 63 48-117 93-161 (388)
271 COG2303 BetA Choline dehydroge 73.7 7.1 0.00015 36.7 5.5 51 56-111 212-265 (542)
272 COG0492 TrxB Thioredoxin reduc 73.1 13 0.00029 32.3 6.7 64 38-112 52-115 (305)
273 PF01946 Thi4: Thi4 family; PD 72.3 20 0.00044 29.8 7.1 60 49-112 98-165 (230)
274 PRK12779 putative bifunctional 70.9 19 0.00042 36.4 8.0 52 57-111 494-561 (944)
275 PRK13512 coenzyme A disulfide 70.4 15 0.00032 33.4 6.7 48 56-111 67-116 (438)
276 PRK08294 phenol 2-monooxygenas 69.2 29 0.00063 33.4 8.6 67 49-118 143-217 (634)
277 PLN02985 squalene monooxygenas 68.3 32 0.00069 32.2 8.5 64 48-118 148-215 (514)
278 KOG1336 Monodehydroascorbate/f 68.2 11 0.00024 34.7 5.2 52 48-110 128-179 (478)
279 PF13434 K_oxygenase: L-lysine 67.8 13 0.00028 32.8 5.6 44 62-110 294-339 (341)
280 COG2072 TrkA Predicted flavopr 65.3 23 0.00049 32.5 6.8 55 49-110 84-142 (443)
281 COG0445 GidA Flavin-dependent 64.9 7.6 0.00017 36.5 3.6 56 48-110 101-156 (621)
282 TIGR02028 ChlP geranylgeranyl 64.7 40 0.00087 30.2 8.2 66 49-118 95-167 (398)
283 PLN02785 Protein HOTHEAD 64.3 20 0.00042 34.2 6.3 56 53-110 226-288 (587)
284 TIGR03143 AhpF_homolog putativ 63.7 26 0.00055 33.1 7.0 53 48-111 61-113 (555)
285 PLN00093 geranylgeranyl diphos 63.3 38 0.00081 31.1 7.8 66 49-118 134-206 (450)
286 PF03197 FRD2: Bacteriophage F 63.1 25 0.00053 25.1 5.0 40 53-102 2-41 (102)
287 KOG0042 Glycerol-3-phosphate d 61.8 96 0.0021 29.5 9.9 97 37-147 213-314 (680)
288 PLN02927 antheraxanthin epoxid 60.6 23 0.0005 34.3 6.1 51 60-119 204-257 (668)
289 COG1251 NirB NAD(P)H-nitrite r 60.5 18 0.00038 35.3 5.2 60 49-120 61-121 (793)
290 COG3486 IucD Lysine/ornithine 60.0 19 0.00041 32.7 5.0 45 62-111 293-339 (436)
291 COG0029 NadB Aspartate oxidase 59.6 28 0.0006 32.4 6.1 68 38-109 124-193 (518)
292 PRK12814 putative NADPH-depend 58.3 47 0.001 32.0 7.9 52 57-111 371-436 (652)
293 PTZ00318 NADH dehydrogenase-li 56.7 29 0.00063 31.3 5.9 55 48-111 63-124 (424)
294 TIGR01424 gluta_reduc_2 glutat 55.6 34 0.00074 31.1 6.2 50 49-111 92-141 (446)
295 COG3573 Predicted oxidoreducta 54.0 24 0.00053 31.4 4.6 37 48-89 150-190 (552)
296 TIGR03143 AhpF_homolog putativ 53.6 50 0.0011 31.1 7.1 53 52-110 183-244 (555)
297 COG0492 TrxB Thioredoxin reduc 53.3 43 0.00094 29.1 6.1 55 50-111 181-237 (305)
298 TIGR01317 GOGAT_sm_gam glutama 53.3 45 0.00097 30.9 6.6 52 55-110 344-412 (485)
299 PF00743 FMO-like: Flavin-bind 53.1 21 0.00046 33.5 4.5 61 48-112 85-150 (531)
300 PF13434 K_oxygenase: L-lysine 51.5 26 0.00057 30.9 4.6 61 48-110 96-157 (341)
301 PRK10262 thioredoxin reductase 51.2 71 0.0015 27.4 7.2 53 48-111 64-116 (321)
302 PRK06567 putative bifunctional 49.5 51 0.0011 33.6 6.6 51 56-110 649-726 (1028)
303 TIGR01789 lycopene_cycl lycope 47.5 39 0.00085 30.0 5.1 38 61-111 100-137 (370)
304 PRK06116 glutathione reductase 45.3 45 0.00097 30.3 5.3 46 50-110 96-141 (450)
305 PRK09853 putative selenate red 44.5 75 0.0016 32.5 6.9 54 51-111 712-778 (1019)
306 TIGR01421 gluta_reduc_1 glutat 44.1 58 0.0013 29.7 5.8 46 50-110 94-139 (450)
307 PRK06416 dihydrolipoamide dehy 41.4 65 0.0014 29.3 5.7 50 51-111 96-145 (462)
308 PLN02546 glutathione reductase 41.0 62 0.0013 30.7 5.6 47 49-110 180-226 (558)
309 PRK07845 flavoprotein disulfid 40.4 82 0.0018 28.9 6.2 52 50-111 95-150 (466)
310 KOG4716 Thioredoxin reductase 38.4 52 0.0011 29.5 4.2 65 44-113 235-301 (503)
311 PRK12779 putative bifunctional 38.3 35 0.00075 34.6 3.6 33 38-70 347-379 (944)
312 PTZ00367 squalene epoxidase; P 38.1 1.2E+02 0.0026 28.8 7.0 65 49-117 133-225 (567)
313 PF02882 THF_DHG_CYH_C: Tetrah 37.4 43 0.00094 26.2 3.3 75 17-113 18-92 (160)
314 PRK14181 bifunctional 5,10-met 36.1 69 0.0015 27.7 4.6 79 16-112 134-212 (287)
315 PRK14180 bifunctional 5,10-met 36.0 78 0.0017 27.3 4.9 76 16-113 139-214 (282)
316 KOG4405 GDP dissociation inhib 32.8 1.3E+02 0.0028 27.7 5.9 88 13-107 250-340 (547)
317 PRK14176 bifunctional 5,10-met 32.5 96 0.0021 26.8 4.9 75 16-112 145-219 (287)
318 PRK06370 mercuric reductase; V 32.3 1.2E+02 0.0025 27.7 5.9 45 52-111 99-144 (463)
319 COG1053 SdhA Succinate dehydro 32.1 95 0.0021 29.5 5.3 62 47-112 138-202 (562)
320 PRK05976 dihydrolipoamide dehy 30.9 1.6E+02 0.0035 26.9 6.6 52 52-110 97-152 (472)
321 PRK14166 bifunctional 5,10-met 30.8 87 0.0019 27.0 4.4 75 16-112 138-212 (282)
322 PRK14189 bifunctional 5,10-met 30.6 98 0.0021 26.7 4.7 73 17-111 140-212 (285)
323 KOG2852 Possible oxidoreductas 29.9 1E+02 0.0022 27.0 4.6 64 48-118 148-213 (380)
324 PRK10597 DNA damage-inducible 29.2 1.2E+02 0.0027 20.9 4.1 34 201-234 3-36 (81)
325 PF10354 DUF2431: Domain of un 28.6 60 0.0013 25.5 2.8 46 50-112 42-87 (166)
326 TIGR03315 Se_ygfK putative sel 28.5 2.4E+02 0.0053 28.9 7.7 53 51-111 710-775 (1012)
327 PRK05249 soluble pyridine nucl 27.5 1.7E+02 0.0036 26.6 6.0 48 51-110 98-147 (461)
328 PRK14185 bifunctional 5,10-met 27.4 1.2E+02 0.0025 26.4 4.6 79 16-112 138-216 (293)
329 PRK09853 putative selenate red 27.3 1.1E+02 0.0024 31.3 5.0 28 48-76 590-617 (1019)
330 PRK06327 dihydrolipoamide dehy 26.9 2E+02 0.0044 26.3 6.5 53 51-111 104-156 (475)
331 PRK14172 bifunctional 5,10-met 26.5 1.2E+02 0.0026 26.0 4.5 75 16-112 139-213 (278)
332 PLN02507 glutathione reductase 26.5 2E+02 0.0044 26.7 6.4 46 53-110 130-177 (499)
333 COG1445 FrwB Phosphotransferas 26.4 48 0.001 24.7 1.8 53 50-117 21-74 (122)
334 COG0493 GltD NADPH-dependent g 26.0 66 0.0014 29.7 3.0 40 37-76 163-203 (457)
335 KOG2311 NAD/FAD-utilizing prot 25.9 99 0.0021 29.1 4.0 57 50-110 127-184 (679)
336 PLN02897 tetrahydrofolate dehy 25.9 1.3E+02 0.0027 26.8 4.6 76 16-113 195-270 (345)
337 PRK14187 bifunctional 5,10-met 25.9 1.2E+02 0.0026 26.3 4.4 75 16-112 141-215 (294)
338 PRK14183 bifunctional 5,10-met 25.5 1.3E+02 0.0029 25.9 4.6 75 16-112 138-212 (281)
339 PRK06467 dihydrolipoamide dehy 25.1 1.9E+02 0.0041 26.5 5.9 46 53-110 99-146 (471)
340 PRK14186 bifunctional 5,10-met 24.8 1.3E+02 0.0029 26.1 4.5 74 17-112 140-213 (297)
341 PRK14173 bifunctional 5,10-met 24.7 1.3E+02 0.0028 26.0 4.4 75 16-112 136-210 (287)
342 PRK14175 bifunctional 5,10-met 24.5 1E+02 0.0023 26.6 3.8 75 16-112 139-213 (286)
343 PRK14169 bifunctional 5,10-met 24.3 1.4E+02 0.0031 25.7 4.6 76 16-113 137-212 (282)
344 PRK14184 bifunctional 5,10-met 24.2 1.3E+02 0.0029 25.9 4.4 79 16-112 138-216 (286)
345 PRK14191 bifunctional 5,10-met 23.7 1.1E+02 0.0023 26.5 3.7 74 17-112 139-212 (285)
346 PRK12778 putative bifunctional 22.9 51 0.0011 32.3 1.8 33 38-70 472-504 (752)
347 PRK10792 bifunctional 5,10-met 22.6 1.8E+02 0.0038 25.2 4.8 75 16-112 140-214 (285)
348 PLN02852 ferredoxin-NADP+ redu 22.2 3.8E+02 0.0082 25.0 7.3 50 60-111 288-353 (491)
349 smart00546 CUE Domain that may 22.1 82 0.0018 18.4 2.0 14 221-234 3-16 (43)
350 TIGR01316 gltA glutamate synth 21.9 49 0.0011 30.2 1.4 32 39-70 175-206 (449)
351 PRK14170 bifunctional 5,10-met 21.6 1.8E+02 0.0039 25.1 4.7 75 16-112 138-212 (284)
352 PRK14182 bifunctional 5,10-met 21.2 2E+02 0.0043 24.8 4.8 74 16-111 138-211 (282)
353 PF08776 VASP_tetra: VASP tetr 20.9 1.2E+02 0.0027 17.9 2.4 13 217-229 10-22 (40)
354 PRK14177 bifunctional 5,10-met 20.9 2.2E+02 0.0047 24.6 5.0 75 17-113 141-215 (284)
355 PF02845 CUE: CUE domain; Int 20.8 93 0.002 18.1 2.0 13 222-234 3-15 (42)
356 PRK14168 bifunctional 5,10-met 20.5 2E+02 0.0043 25.0 4.7 79 16-112 142-220 (297)
357 PRK11749 dihydropyrimidine deh 20.4 95 0.0021 28.3 3.0 26 46-71 189-214 (457)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=8.4e-32 Score=249.18 Aligned_cols=233 Identities=82% Similarity=1.367 Sum_probs=184.4
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (234)
||+|+|.+++|.+++++||++++.+|..|..+..+++++|++|++++.|+++++++|+++||+|+++++|++|..+++.+
T Consensus 249 l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~ 328 (569)
T PLN02487 249 MWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPD 328 (569)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCC
Confidence 69999999999999999999999999876655667899999999998899999999999999999999999999984201
Q ss_pred CcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHH
Q 026733 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQ 160 (234)
Q Consensus 81 ~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~ 160 (234)
|..++++|.+.++.+++.+.+|+||+|+|++.+++|+|+.+...+.++++.+|++.+|++|||+||++++.-...+.+.+
T Consensus 329 g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~ 408 (569)
T PLN02487 329 GETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQ 408 (569)
T ss_pred CceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEeccccccccccccccc
Confidence 21137888873223566789999999999999999999876656678899999999999999999998873221111111
Q ss_pred hhhhcCCCcccccCCCCcchhhhcccCCccccccCCCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 026733 161 LRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQLYFHHPK 233 (234)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~P~ 233 (234)
+.+....+++++..+..+++|.+.+.+.+++|+.++++++++++++++++++.+++|||+++++++|+++||.
T Consensus 409 l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~ 481 (569)
T PLN02487 409 LRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPS 481 (569)
T ss_pred ccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcc
Confidence 1100124454455555666666665555544544455789999999999999999999999999999999986
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.96 E-value=1.2e-28 Score=225.14 Aligned_cols=233 Identities=72% Similarity=1.204 Sum_probs=178.5
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (234)
||+|||.+++|.+++++||++++.+++.|..+++++.+++++|++++.+.++|++.|+++||+|++|++|++|+.+++.+
T Consensus 173 ~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~ 252 (474)
T TIGR02732 173 MWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSD 252 (474)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCC
Confidence 69999999999999999999999999987777888899999999988899999999999999999999999999864100
Q ss_pred CcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHH
Q 026733 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQ 160 (234)
Q Consensus 81 ~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~ 160 (234)
+..++++|++..+.+++.+.||+||+|+|++.+.+|+++.+...+.++.+.++.+.|+++|+|+||+++..-........
T Consensus 253 ~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~ 332 (474)
T TIGR02732 253 GSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQ 332 (474)
T ss_pred CceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhc
Confidence 20027787774211136689999999999999999999755444567788899999999999999998762111110011
Q ss_pred hhhhcCCCcccccCCCCcchhhhcccCCccccccCCCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 026733 161 LRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQLYFHHPK 233 (234)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~P~ 233 (234)
+.+....+++++..+..+.+|.+.+.+.+.+|++.+.+.+++++++++++++++++|||+++++++|+++||+
T Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~ 405 (474)
T TIGR02732 333 LKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPS 405 (474)
T ss_pred ccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCcc
Confidence 1000124455544444455666655555534555555677999999999999999999999999999999985
No 3
>PLN02612 phytoene desaturase
Probab=99.94 E-value=7.4e-26 Score=210.76 Aligned_cols=210 Identities=29% Similarity=0.547 Sum_probs=175.9
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (234)
+|+||+.++.|.+|+++|+.+++..+..++...+++.++++.|++.+.++++|++.|+++||+|++|++|++|..+++
T Consensus 262 ~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-- 339 (567)
T PLN02612 262 VFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-- 339 (567)
T ss_pred HHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC--
Confidence 589999999999999999999999998877777788999999998778999999999999999999999999999763
Q ss_pred CcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHH
Q 026733 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQ 160 (234)
Q Consensus 81 ~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~ 160 (234)
| ++++|.+. +|+.+.||+||+|+|+..+++|+++.+.+.++++++.++.+.++++++++||+++..
T Consensus 340 g--~v~~v~~~---~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~--------- 405 (567)
T PLN02612 340 G--TVKHFLLT---NGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKN--------- 405 (567)
T ss_pred C--cEEEEEEC---CCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCC---------
Confidence 5 67788873 788999999999999999999998765545677888888888999999999998741
Q ss_pred hhhhcCCCcccccCCCCcchhhhcccCCccccccCCCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 026733 161 LRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQLYFHHPK 233 (234)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~P~ 233 (234)
..++++++.++..+++.+++...+ ++++++ ++++.+++.++++|..+++||+++.++++|+++||+
T Consensus 406 -----~~~~~~~~~~~~~~~~~d~S~~~~-~~~~~~-~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~ 471 (567)
T PLN02612 406 -----TYDHLLFSRSPLLSVYADMSTTCK-EYYDPN-KSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPD 471 (567)
T ss_pred -----CCCceeecCCCCceeehhhhhcch-hhcCCC-CeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCc
Confidence 234566665555556666654445 366665 578888888888999999999999999999999985
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.91 E-value=4.8e-23 Score=187.26 Aligned_cols=209 Identities=32% Similarity=0.552 Sum_probs=162.1
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (234)
||+|++.++.+.+|+++|+.+++..++.++....++..++..|+....++++|.+.++++|++|++|++|++|+.+++
T Consensus 167 ~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-- 244 (453)
T TIGR02731 167 VFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-- 244 (453)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC--
Confidence 589999999999999999999999998866666677788888776667999999999999999999999999987653
Q ss_pred CcceEEEEEEeecCCCe-----EEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhh
Q 026733 81 AETYVKGLAMSKATDKK-----VVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDL 155 (234)
Q Consensus 81 ~~~~~~~v~~~~~~~g~-----~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~ 155 (234)
| ++++|++. +|+ ++.+|+||+|+|++.+.+|||.......+.+.+.++++.++++++++|++++.
T Consensus 245 ~--~v~~v~~~---~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~----- 314 (453)
T TIGR02731 245 G--SVKHFVLA---DGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLT----- 314 (453)
T ss_pred C--CEEEEEEe---cCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccC-----
Confidence 5 68888874 443 78999999999999999999864333346677778888899999999999875
Q ss_pred HHHHHhhhhcCCCcccccCCCCcchhhhcccCCccccccCCCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 026733 156 ERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQLYFHHPK 233 (234)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~P~ 233 (234)
..+++++.+++......+++.... ++.+++ ++++.++++.++.|..+++||+.++++++|+++||+
T Consensus 315 ----------~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~-~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~ 380 (453)
T TIGR02731 315 ----------TVDHLLFSRSPLLSVYADMSETCK-EYADPD-KSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPN 380 (453)
T ss_pred ----------CCCceeeeCCCcceeecchhhhCh-hhcCCC-CeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCc
Confidence 233455554443222222221111 133343 577887777778899999999999999999999984
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.80 E-value=3.3e-18 Score=153.05 Aligned_cols=199 Identities=21% Similarity=0.262 Sum_probs=146.5
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHH-HhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCC
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFAL-FATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA 79 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~-~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~ 79 (234)
||+|++....+.+|+++|+.+++.+++. +.....+..+.+++|++++.+.++|++.|+++|++|++|++|++|..++
T Consensus 150 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~-- 227 (419)
T TIGR03467 150 LWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA-- 227 (419)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--
Confidence 5789999999999999999999988875 5444445578999999987677889999999999999999999999986
Q ss_pred CCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHH
Q 026733 80 NAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSR 159 (234)
Q Consensus 80 ~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~ 159 (234)
+ +++.+ +. .+|+.+.||.||+|+|++.+.+|++.. ...+.+.++++.++++++|.|++++..
T Consensus 228 -~--~~~~~-~~--~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~-------- 289 (419)
T TIGR03467 228 -G--GIRAL-VL--SGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRL-------- 289 (419)
T ss_pred -C--cceEE-Ee--cCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCC--------
Confidence 3 34322 22 267788999999999999999999852 234567788888999999999997630
Q ss_pred HhhhhcCCCcccccCCCCcchhhhcccCCccccccCCCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 026733 160 QLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQLYFHHPK 233 (234)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~P~ 233 (234)
+.+...+...+..+++ +. + ... + ...++.+++..++.+..+++|++.+.++++|++++|.
T Consensus 290 ------~~~~~~~~~~~~~~~~-~~----~-~~~-~-~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~ 349 (419)
T TIGR03467 290 ------PAPMVGLVGGLAQWLF-DR----G-QLA-G-EPGYLAVVISAARDLVDLPREELADRIVAELRRAFPR 349 (419)
T ss_pred ------CCCeeeecCCceeEEE-EC----C-cCC-C-CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCc
Confidence 1111111111111111 11 1 011 1 1245666777777888999999999999999999984
No 6
>PRK07233 hypothetical protein; Provisional
Probab=99.77 E-value=2.8e-17 Score=147.92 Aligned_cols=205 Identities=20% Similarity=0.230 Sum_probs=145.1
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHh-cCC--ccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEecc
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFA-TKT--EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDK 77 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~-~~~--~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~ 77 (234)
||+|++....+.+++++|+.+++..+.... ... ....+++++|++. .++++|++.+++.|++|++|++|++|..++
T Consensus 150 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~ 228 (434)
T PRK07233 150 FWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFA-TLIDALAEAIEARGGEIRLGTPVTSVVIDG 228 (434)
T ss_pred HHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHH-HHHHHHHHHHHhcCceEEeCCCeeEEEEcC
Confidence 589999999999999999999887666432 111 1235888999986 699999999999999999999999999876
Q ss_pred CCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHH
Q 026733 78 AANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLER 157 (234)
Q Consensus 78 ~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~ 157 (234)
+ +++.+.. +|+.++||.||+|+|++.+.+|++... ....+.+.++.+.+++++++++++++.+
T Consensus 229 ---~--~~~~~~~----~~~~~~ad~vI~a~p~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 291 (434)
T PRK07233 229 ---G--GVTGVEV----DGEEEDFDAVISTAPPPILARLVPDLP--ADVLARLRRIDYQGVVCMVLKLRRPLTD------ 291 (434)
T ss_pred ---C--ceEEEEe----CCceEECCEEEECCCHHHHHhhcCCCc--HHHHhhhcccCccceEEEEEEecCCCCC------
Confidence 3 5655543 677899999999999999889987532 2344557788888999999999997641
Q ss_pred HHHhhhhcCCCcccccCC--CCcchhhhcccCCccccccCCCceE-EEEEeeCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 026733 158 SRQLRRALGLDNLLYTPD--ADFSCFADLALTSPEDYYREGQGSL-LQCVLTPGDPYMPLPNDEIIRRVAKQLYFHHPKV 234 (234)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~g~~~~-~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~P~~ 234 (234)
..|....+ ..+..+...+..+|. ..|+++..+ +.+++...+.++.+++|+++++++++|++++|++
T Consensus 292 ----------~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~ 360 (434)
T PRK07233 292 ----------YYWLNINDPGAPFGGVIEHTNLVPP-ERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDF 360 (434)
T ss_pred ----------CceeeecCCCCCcceEEEecccCCc-cccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCC
Confidence 12222111 111111122223332 233443222 3444444455678899999999999999999953
No 7
>PRK07208 hypothetical protein; Provisional
Probab=99.73 E-value=7.1e-16 Score=141.15 Aligned_cols=208 Identities=17% Similarity=0.167 Sum_probs=141.3
Q ss_pred CchHHHHHcCCCCcccccHHHHHH---------HHHH-Hhc------------CCccceeeecCCCCcccchHHHHHHHH
Q 026733 1 MWDPVAYALGFIDCDNISARCMLT---------IFAL-FAT------------KTEASLLRMLKGSPDVYLSGPIRKYIT 58 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~---------~l~~-~~~------------~~~~~~~g~~~g~~~~~l~~~l~~~l~ 58 (234)
||+|++....+.+++++|+.+++. +++. +.. ......+++++|+++ .|+++|++.++
T Consensus 151 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~-~l~~~L~~~l~ 229 (479)
T PRK07208 151 FFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPG-QLWETAAEKLE 229 (479)
T ss_pred HHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcc-hHHHHHHHHHH
Confidence 589999999999999999997542 2221 111 000135889999997 69999999999
Q ss_pred HCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCC
Q 026733 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGV 136 (234)
Q Consensus 59 ~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~ 136 (234)
+.|++|++|++|++|..+++ + .++.+... .++|+ .+.||+||+|+|+..+.++++.. ......+.+.++++.
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~--~--~v~~~~~~-~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~~~~~~~~~~l~~~ 303 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGD--G--RIAVVVVN-DTDGTEETVTADQVISSMPLRELVAALDPP-PPPEVRAAAAGLRYR 303 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCC--c--EEEEEEEE-cCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CCHHHHHHHhCCCcc
Confidence 99999999999999999873 4 34444432 12343 68899999999999888877632 222344556788888
Q ss_pred cEEEEEEEecCccchhhhhHHHHHhhhhcCCCcccccCCCCc--chhhhcccCCccccccCCCceEE--EEEeeCCCCCC
Q 026733 137 PVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDADF--SCFADLALTSPEDYYREGQGSLL--QCVLTPGDPYM 212 (234)
Q Consensus 137 ~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~g~~~~~--~~~~~~~~~~~ 212 (234)
++++++++++++.. ...+|++.+++.+ +.....+..+| ...|+|++.++ ++++...+..+
T Consensus 304 ~~~~v~l~~~~~~~---------------~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~p~g~~~~l~~~~~~~~~~~~~ 367 (479)
T PRK07208 304 DFITVGLLVKELNL---------------FPDNWIYIHDPDVKVGRLQNFNNWSP-YLVPDGRDTWLGLEYFCFEGDDLW 367 (479)
T ss_pred eeEEEEEEecCCCC---------------CCCceEEecCCCCccceecccccCCc-ccCCCCCceEEEEEEEccCCCccc
Confidence 99999999998642 1223333322211 11111122234 24666643443 33445556777
Q ss_pred CCCHHHHHHHHHHHHHhhC
Q 026733 213 PLPNDEIIRRVAKQLYFHH 231 (234)
Q Consensus 213 ~~~~eei~~~~l~~L~~~~ 231 (234)
.++|||++++++++|.++.
T Consensus 368 ~~~deel~~~~~~~L~~l~ 386 (479)
T PRK07208 368 NMSDEDLIALAIQELARLG 386 (479)
T ss_pred cCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999975
No 8
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2e-16 Score=142.16 Aligned_cols=224 Identities=42% Similarity=0.654 Sum_probs=178.3
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHhcCC-ccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCC
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKT-EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA 79 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~~~~-~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~ 79 (234)
.|.|+.+++.|.+++++||+.+.+++..|...+ +++...+++|+..+.+..++.+++.+.|+++|...+|.+|.++..
T Consensus 168 ~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~- 246 (485)
T COG3349 168 AFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGA- 246 (485)
T ss_pred HHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeecccc-
Confidence 389999999999999999999999999876555 788899999999999999999999999999999999999998762
Q ss_pred CCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHH
Q 026733 80 NAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSR 159 (234)
Q Consensus 80 ~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~ 159 (234)
.+..+++|+.+. ...-+...++.|+.+...+.+...+|..|.+...++++..+...|++++++++++.++..-.... .
T Consensus 247 ~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~-~ 324 (485)
T COG3349 247 RGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQ-Q 324 (485)
T ss_pred ccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCccccccccch-h
Confidence 121167888773 11223456888888888999999999988866678889999999999999999986653222110 0
Q ss_pred HhhhhcCCCcccccCCCCcchhhhcccCCccccccCCCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 026733 160 QLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQLYFHHPK 233 (234)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~P~ 233 (234)
. ..+|..+..++..+++.+...+.+ .++..+....++.++.++..|...+++++...+.+++...+|.
T Consensus 325 ~-----~~dn~~~s~~~l~~~~ad~~~~~~-~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~ 392 (485)
T COG3349 325 F-----GIDNLLWSDDTLGGVVADLALTSP-DYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPS 392 (485)
T ss_pred h-----hhhccccccccCCceeeeccccch-hhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCc
Confidence 0 234554555555566666665555 4666665678889999999999999999999999999998885
No 9
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.67 E-value=3.5e-15 Score=137.15 Aligned_cols=202 Identities=15% Similarity=0.118 Sum_probs=128.9
Q ss_pred CCCcccccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEE
Q 026733 11 FIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAM 90 (234)
Q Consensus 11 ~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~ 90 (234)
..+|++.|+...+.++.. .....+ ..+++|+++ .|+++|++.++++||+|++|++|++|..++ + ++++|.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~~~G--~~~~~GG~~-~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~---~--~~~gv~~ 270 (492)
T TIGR02733 200 QEDADETAALYGATVLQM-AQAPHG--LWHLHGSMQ-TLSDRLVEALKRDGGNLLTGQRVTAIHTKG---G--RAGWVVV 270 (492)
T ss_pred cCChhhhhHHHHHHHhhc-cccCCC--ceeecCcHH-HHHHHHHHHHHhcCCEEeCCceEEEEEEeC---C--eEEEEEE
Confidence 345667777665444332 211122 345889987 699999999999999999999999999987 4 6778877
Q ss_pred eecCC--CeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCC-cEEEEEEEecCccchhhhhHHHHHhhhhcCC
Q 026733 91 SKATD--KKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGV-PVVTVQLRYNGWVTELQDLERSRQLRRALGL 167 (234)
Q Consensus 91 ~~~~~--g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~-~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~ 167 (234)
.++.+ ++.+.||+||+|+|+..+.+|++....+..+.+++.++++. +.+++++.+++...+.. .. ..
T Consensus 271 ~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~-------~~---~~ 340 (492)
T TIGR02733 271 VDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVD-------CP---PH 340 (492)
T ss_pred ecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCC-------CC---cc
Confidence 42111 26789999999999998888987533333455667777754 56689999987432110 00 00
Q ss_pred CcccccCCCCcchhhhcccCCccccccCCCceEEEEEeeCCCCCCC-------CCHHHHHHHHHHHHHhhCCCC
Q 026733 168 DNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMP-------LPNDEIIRRVAKQLYFHHPKV 234 (234)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~-------~~~eei~~~~l~~L~~~~P~~ 234 (234)
..+.+...+ ++|.+.+..+| ..+|+|+.++...+..+..+|.. ..++++++++++.|++.+|++
T Consensus 341 ~~~~~~~~~--~~~v~~~~~d~-~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~~~p~l 411 (492)
T TIGR02733 341 LQFLSDHQG--SLFVSISQEGD-GRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGHYFDLL 411 (492)
T ss_pred eeeccCCCc--eEEEEeCCccc-cCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 112222222 34544444556 36888743332222223333322 225779999999999999975
No 10
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.61 E-value=2.1e-14 Score=129.14 Aligned_cols=200 Identities=20% Similarity=0.199 Sum_probs=138.8
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHhcCCc-----------------cceeeecCCCCcccchHHHHHHHHHCCcE
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTE-----------------ASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~~~~~-----------------~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (234)
||.||+-+....+++++||+.....+.+..+... ...+++++|+++ .+++++++.++.+
T Consensus 153 ~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~-~l~~al~~~l~~~--- 228 (444)
T COG1232 153 FIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQ-SLIEALAEKLEAK--- 228 (444)
T ss_pred HHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHH-HHHHHHHHHhhhc---
Confidence 5789999999999999999953333332211111 125899999997 6999999999988
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEE
Q 026733 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (234)
Q Consensus 64 i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l 143 (234)
|++|++|++|..+++ + +++.. .+|+.+.||.||+|+|++.+.+|+++ .+..+...++.+.++++|.+
T Consensus 229 i~~~~~V~~i~~~~~--~----~~~~~---~~g~~~~~D~VI~t~p~~~l~~ll~~----~~~~~~~~~~~~~s~~~vv~ 295 (444)
T COG1232 229 IRTGTEVTKIDKKGA--G----KTIVD---VGGEKITADGVISTAPLPELARLLGD----EAVSKAAKELQYTSVVTVVV 295 (444)
T ss_pred eeecceeeEEEEcCC--c----cEEEE---cCCceEEcceEEEcCCHHHHHHHcCC----cchhhhhhhccccceEEEEE
Confidence 999999999999852 3 34444 38888999999999999999999997 23345567778889999999
Q ss_pred EecCccchhhhhHHHHHhhhhcCCCc-ccccCCCC--cchhhhcccCCccccccCCCceEEEEEee-CC-CCCCCCCHHH
Q 026733 144 RYNGWVTELQDLERSRQLRRALGLDN-LLYTPDAD--FSCFADLALTSPEDYYREGQGSLLQCVLT-PG-DPYMPLPNDE 218 (234)
Q Consensus 144 ~~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~--~~~~~~~~~~~p~~~~~~g~~~~~~~~~~-~~-~~~~~~~~ee 218 (234)
.++.+-.+ . .+++ |++..++. +......+..-| ...|+| ++++.+.+. +. +....++|||
T Consensus 296 ~~~~~~~~---------~----~~~~~g~~iad~~~~~~a~~~~S~~~p-~~~p~g-~~ll~~~~~~~g~~~~~~~~dee 360 (444)
T COG1232 296 GLDEKDNP---------A----LPDGYGLLIADDDPYILAITFHSNKWP-HEAPEG-KTLLRVEFGGPGDESVSTMSDEE 360 (444)
T ss_pred Eecccccc---------C----CCCceEEEEecCCCcceeEEEecccCC-CCCCCC-cEEEEEEeecCCCcchhccCHHH
Confidence 99985110 0 2233 44333332 211111122223 123344 567776665 33 3556788999
Q ss_pred HHHHHHHHHHhhCC
Q 026733 219 IIRRVAKQLYFHHP 232 (234)
Q Consensus 219 i~~~~l~~L~~~~P 232 (234)
+++.++++|.++++
T Consensus 361 ~~~~~l~~L~~~~~ 374 (444)
T COG1232 361 LVAAVLDDLKKLGG 374 (444)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999986
No 11
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.54 E-value=1.7e-13 Score=126.11 Aligned_cols=196 Identities=15% Similarity=0.179 Sum_probs=126.9
Q ss_pred CcccccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee
Q 026733 13 DCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK 92 (234)
Q Consensus 13 ~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~ 92 (234)
++.+.++...+.++.. .....+.++.|+.. .++++|++.++++||+|+++++|++|..++ + ++.+|++.
T Consensus 200 p~~~~p~~~~~~~~~~----~~~~g~~~~~gG~~-~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~---~--~~~gv~~~- 268 (493)
T TIGR02730 200 PADQTPMINAGMVFSD----RHYGGINYPKGGVG-QIAESLVKGLEKHGGQIRYRARVTKIILEN---G--KAVGVKLA- 268 (493)
T ss_pred CcccchhhhHHHhhcc----cccceEecCCChHH-HHHHHHHHHHHHCCCEEEeCCeeeEEEecC---C--cEEEEEeC-
Confidence 4466666554433321 11123466888886 699999999999999999999999999986 4 78899884
Q ss_pred cCCCeEEecCEEEEcCChh-hHhhhCCCcccCchHHHHhhcCC-CCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcc
Q 026733 93 ATDKKVVQADAYVAACDVP-GIKRLLPSSWREMKFFNNIYALV-GVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNL 170 (234)
Q Consensus 93 ~~~g~~~~aD~VV~a~~~~-~~~~Ll~~~~~~~~~~~~~~~l~-~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~~ 170 (234)
+|+.+.||.||+|+++. .+.+|+++...+..+...+++++ +.+.+++++.++++..+... ...++
T Consensus 269 --~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~-----------~~~~~ 335 (493)
T TIGR02730 269 --DGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGT-----------ECHHI 335 (493)
T ss_pred --CCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCCC-----------CccEE
Confidence 78889999999999875 57779986543323333445555 44799999999985432110 00111
Q ss_pred ccc-----CCCCcchhhhc-ccCCccccccCCCceEEEEEee-CCCCCCCC-------CHHHHHHHHHHHHHhhCCCC
Q 026733 171 LYT-----PDADFSCFADL-ALTSPEDYYREGQGSLLQCVLT-PGDPYMPL-------PNDEIIRRVAKQLYFHHPKV 234 (234)
Q Consensus 171 ~~~-----~~~~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~-~~~~~~~~-------~~eei~~~~l~~L~~~~P~~ 234 (234)
++. .....++|.+. +..|| +.+|+|+ +.+.+.+. +...|.++ .++++.+++++.|++++|++
T Consensus 336 ~~~~~~~~~~~~~~~~v~~ps~~dp-s~aP~G~-~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l 411 (493)
T TIGR02730 336 LLEDWTNLEKPQGTIFVSIPTLLDP-SLAPEGH-HIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGL 411 (493)
T ss_pred ecchhhccCCCCCeEEEEeCCCCCC-CCCcCCc-EEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCCh
Confidence 110 11112344443 45678 4888874 44444332 22334322 35779999999999999975
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.54 E-value=3.1e-13 Score=123.30 Aligned_cols=201 Identities=12% Similarity=0.113 Sum_probs=132.1
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHh-----------c------CCccceeeecCCCCcccchHHHHHHHHHCCcE
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFA-----------T------KTEASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~-----------~------~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (234)
+|+|++.+....+++++|+...+..+..+. . ...+..+.+++|+++ .|+++|++.+++ ++
T Consensus 164 ~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~~--~~ 240 (463)
T PRK12416 164 QIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLS-TIIDRLEEVLTE--TV 240 (463)
T ss_pred HHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHH-HHHHHHHHhccc--cc
Confidence 588999988999999999986443332110 0 012234677899997 688999999865 78
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEE
Q 026733 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (234)
Q Consensus 64 i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l 143 (234)
|++|++|++|..++ + + +.|.+ .+|+.+.||+||+|+|++.+.+|++.. +..+.+.++++.++.++++
T Consensus 241 i~~~~~V~~I~~~~---~--~-~~v~~---~~g~~~~ad~VI~a~p~~~~~~ll~~~----~l~~~~~~~~~~~~~~v~l 307 (463)
T PRK12416 241 VKKGAVTTAVSKQG---D--R-YEISF---ANHESIQADYVVLAAPHDIAETLLQSN----ELNEQFHTFKNSSLISIYL 307 (463)
T ss_pred EEcCCEEEEEEEcC---C--E-EEEEE---CCCCEEEeCEEEECCCHHHHHhhcCCc----chhHHHhcCCCCceEEEEE
Confidence 99999999999876 3 3 45655 377788999999999999999998742 2334567778889999999
Q ss_pred EecCccchhhhhHHHHHhhhhcCCCc--ccccCCCCcchhhhc--ccCCccccccCCCceEEEEEee----CCCCCCCCC
Q 026733 144 RYNGWVTELQDLERSRQLRRALGLDN--LLYTPDADFSCFADL--ALTSPEDYYREGQGSLLQCVLT----PGDPYMPLP 215 (234)
Q Consensus 144 ~~d~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~--~~~~p~~~~~~g~~~~~~~~~~----~~~~~~~~~ 215 (234)
.|+++... + +.+. ++.+.+....+-.+. +..-+ . .+++...++.+++. .++.+..++
T Consensus 308 ~~~~~~~~---------~----~~~g~G~l~~~~~~~~~~~~~~~s~~~~-~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 372 (463)
T PRK12416 308 GFDILDEQ---------L----PADGTGFIVTENSDLHCDACTWTSRKWK-H-TSGKQKLLVRMFYKSTNPVYETIKNYS 372 (463)
T ss_pred EechhhcC---------C----CCCceEEEeeCCCCCeEEEEEeecCCCC-C-cCCCCeEEEEEEeCCCCCCchhhhcCC
Confidence 99975320 0 1111 222222211110000 00011 0 11222345555553 234577889
Q ss_pred HHHHHHHHHHHHHhhCC
Q 026733 216 NDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 216 ~eei~~~~l~~L~~~~P 232 (234)
+||+.+.++++|++++.
T Consensus 373 dee~~~~~~~~L~~~lG 389 (463)
T PRK12416 373 EEELVRVALYDIEKSLG 389 (463)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999874
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.51 E-value=6.5e-13 Score=120.31 Aligned_cols=202 Identities=19% Similarity=0.218 Sum_probs=132.5
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHh---------------cC--CccceeeecCCCCcccchHHHHHHHHHCCcE
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFA---------------TK--TEASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~---------------~~--~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (234)
+|+|++....+.+++++|+.+++..+..+. .. ..+....+++|+++ .+++.+++.+.+. +
T Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~l~~~l~~~l~~~--~ 235 (451)
T PRK11883 159 LIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQ-SLIEALEEKLPAG--T 235 (451)
T ss_pred HHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHH-HHHHHHHHhCcCC--e
Confidence 588999999999999999988654443211 00 11234566788886 5888888887654 8
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEE
Q 026733 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (234)
Q Consensus 64 i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l 143 (234)
|++|++|++|..++ + . +.|.+ .+|+.+.||+||+|+|+..+.+++... +..+.+.++++.++.++++
T Consensus 236 i~~~~~V~~i~~~~---~--~-~~v~~---~~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~~~~v~l 302 (451)
T PRK11883 236 IHKGTPVTKIDKSG---D--G-YEIVL---SNGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTSVATVAL 302 (451)
T ss_pred EEeCCEEEEEEEcC---C--e-EEEEE---CCCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCceEEEEE
Confidence 99999999999876 2 2 34555 378889999999999999998887642 2345677888889999999
Q ss_pred EecCccchhhhhHHHHHhhhhcCCCcccccCCCCcchhh--hcccCCccccccCCCceEEEEEee-CC-CCCCCCCHHHH
Q 026733 144 RYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSCFA--DLALTSPEDYYREGQGSLLQCVLT-PG-DPYMPLPNDEI 219 (234)
Q Consensus 144 ~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~g~~~~~~~~~~-~~-~~~~~~~~eei 219 (234)
+|++++.... ...++++..+....+.. ..+...| ...|++ ..++.+... ++ +....++++++
T Consensus 303 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~p~g-~~~~~~~~~~~~~~~~~~~~~~~~ 368 (451)
T PRK11883 303 AFPESATNLP------------DGTGFLVARNSDYTITACTWTSKKWP-HTTPEG-KVLLRLYVGRPGDEAVVDATDEEL 368 (451)
T ss_pred EeccccCCCC------------CceEEEecCCCCCcEEEEEeEcCcCC-CCCCCC-cEEEEEecCCCCCchhccCCHHHH
Confidence 9998742000 11123333222111111 1111223 134444 344444332 22 23567899999
Q ss_pred HHHHHHHHHhhCC
Q 026733 220 IRRVAKQLYFHHP 232 (234)
Q Consensus 220 ~~~~l~~L~~~~P 232 (234)
++.++++|+++++
T Consensus 369 ~~~~~~~L~~~~g 381 (451)
T PRK11883 369 VAFVLADLSKVMG 381 (451)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
No 14
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.50 E-value=1.6e-12 Score=119.86 Aligned_cols=202 Identities=17% Similarity=0.137 Sum_probs=124.1
Q ss_pred CCcccccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEe
Q 026733 12 IDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS 91 (234)
Q Consensus 12 ~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~ 91 (234)
.+|.+.++...+..+..+ .. -+-++.|+.. .++++|.+.++++|++|+++++|++|..++ + ++++|++
T Consensus 190 ~~p~~~~~~~~l~~~~~~---~~--g~~~~~gG~~-~l~~al~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~V~~- 257 (502)
T TIGR02734 190 GNPFRTPSIYALISALER---EW--GVWFPRGGTG-ALVAAMAKLAEDLGGELRLNAEVIRIETEG---G--RATAVHL- 257 (502)
T ss_pred cCcccchHHHHHHHHHHh---hc--eEEEcCCCHH-HHHHHHHHHHHHCCCEEEECCeEEEEEeeC---C--EEEEEEE-
Confidence 456677765433211111 11 2336777775 799999999999999999999999999886 4 7888987
Q ss_pred ecCCCeEEecCEEEEcCChhh-HhhhCCCcccCchHHHHhhcCC-CCcEEEEEEEec---Cccchh---hh-h-HHHHHh
Q 026733 92 KATDKKVVQADAYVAACDVPG-IKRLLPSSWREMKFFNNIYALV-GVPVVTVQLRYN---GWVTEL---QD-L-ERSRQL 161 (234)
Q Consensus 92 ~~~~g~~~~aD~VV~a~~~~~-~~~Ll~~~~~~~~~~~~~~~l~-~~~~~~v~l~~d---~~~~~~---~~-~-~~~~~l 161 (234)
.+|+.+.||.||+|++++. +..|++....+..+.+.+++++ +.+.+++++.++ +++... .. + ......
T Consensus 258 --~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 335 (502)
T TIGR02734 258 --ADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKEL 335 (502)
T ss_pred --CCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHH
Confidence 4788899999999999864 5668876543222234456666 458899999998 333210 00 0 000000
Q ss_pred hhhcCCCccc-cc-CCCCcchhhhc-ccCCccccccCCCceEEEEEeeCCC-----CCCCCCHHHHHHHHHHHHHhh-CC
Q 026733 162 RRALGLDNLL-YT-PDADFSCFADL-ALTSPEDYYREGQGSLLQCVLTPGD-----PYMPLPNDEIIRRVAKQLYFH-HP 232 (234)
Q Consensus 162 ~~~~~~~~~~-~~-~~~~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~~~~-----~~~~~~~eei~~~~l~~L~~~-~P 232 (234)
. ..+. .. .....++|... +..|| +.+|+|+.++...+..+.+ .|.. .++++.+++++.|++. +|
T Consensus 336 ~-----~~~~~~g~~~~~p~~~v~~~s~~dp-~~aP~G~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p 408 (502)
T TIGR02734 336 F-----DEIFRKGRLAEDPSLYLHRPTVTDP-SLAPPGCENLYVLAPVPHLGTADVDWSV-EGPRYRDRILAYLEERAIP 408 (502)
T ss_pred H-----HHHhcCCCCCCCCcEEEEcCCCCCC-CCCCCCCccEEEEEeCCCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCC
Confidence 0 0000 00 00112344433 56678 4889885443222222322 2323 4788999999999998 99
Q ss_pred CC
Q 026733 233 KV 234 (234)
Q Consensus 233 ~~ 234 (234)
++
T Consensus 409 ~l 410 (502)
T TIGR02734 409 GL 410 (502)
T ss_pred Ch
Confidence 75
No 15
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.47 E-value=2.2e-12 Score=117.51 Aligned_cols=202 Identities=15% Similarity=0.180 Sum_probs=132.2
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHH-----------hcC---Cc-----------cceeeecCCCCcccchHHHHH
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALF-----------ATK---TE-----------ASLLRMLKGSPDVYLSGPIRK 55 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~-----------~~~---~~-----------~~~~g~~~g~~~~~l~~~l~~ 55 (234)
||+|++....+.+++++|+.+++..+... ... .. +..+..+.|+++ .|.+.+++
T Consensus 155 ~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~ 233 (462)
T TIGR00562 155 LIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLE-TLPEEIEK 233 (462)
T ss_pred HHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHH-HHHHHHHH
Confidence 58899998999999999999866443211 000 00 111333566665 57888888
Q ss_pred HHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCC
Q 026733 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVG 135 (234)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~ 135 (234)
.|. .++|++|++|++|..+++ + +.|+. ++|+.+.||+||+|+|++.+.+|++.. .....+.+.++++
T Consensus 234 ~l~--~~~i~~~~~V~~I~~~~~--~----~~v~~---~~g~~~~ad~VI~t~P~~~~~~ll~~~--~~~~~~~l~~l~~ 300 (462)
T TIGR00562 234 RLK--LTKVYKGTKVTKLSHRGS--N----YTLEL---DNGVTVETDSVVVTAPHKAAAGLLSEL--SNSASSHLDKIHS 300 (462)
T ss_pred Hhc--cCeEEcCCeEEEEEecCC--c----EEEEE---CCCcEEEcCEEEECCCHHHHHHHhccc--CHHHHHHHhcCCC
Confidence 875 278999999999998762 2 34554 367789999999999999999999753 2235566888999
Q ss_pred CcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcc--cccCCCC---cchhhhcccCCccccccCCCceEEEEEee--CC
Q 026733 136 VPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNL--LYTPDAD---FSCFADLALTSPEDYYREGQGSLLQCVLT--PG 208 (234)
Q Consensus 136 ~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~---~~~~~~~~~~~p~~~~~~g~~~~~~~~~~--~~ 208 (234)
.++.++.+.|+++... . ....+ +...+.. ..+..+ +...| ...|.+ .+++.+++. .+
T Consensus 301 ~~~~~v~l~~~~~~~~-----------~--~~~~~g~l~~~~~~~~~~~~i~~-s~~~p-~~~p~g-~~~l~~~~~g~~~ 364 (462)
T TIGR00562 301 PPVANVNLGFPEGSVD-----------G--ELEGFGFLISRSSKFAILGCIFT-SKLFP-NRAPPG-KTLLTAYIGGATD 364 (462)
T ss_pred CceEEEEEEEchHHcC-----------C--CCCceEEEccCCCCCceEEEEEE-ccccC-CcCCCC-cEEEEEEeCCCCC
Confidence 9999999999875310 0 11222 2121111 111111 11123 234444 355655554 34
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 209 DPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 209 ~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
+.+.++++|++++.++++|.++++
T Consensus 365 ~~~~~~~~ee~~~~v~~~L~~~~g 388 (462)
T TIGR00562 365 ESIVDLSENEIINIVLRDLKKVLN 388 (462)
T ss_pred ccccCCCHHHHHHHHHHHHHHHhC
Confidence 577889999999999999999874
No 16
>PLN02576 protoporphyrinogen oxidase
Probab=99.46 E-value=4.7e-12 Score=116.48 Aligned_cols=210 Identities=15% Similarity=0.170 Sum_probs=131.8
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHH---------------HhcC---------------CccceeeecCCCCcccch
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFAL---------------FATK---------------TEASLLRMLKGSPDVYLS 50 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~---------------~~~~---------------~~~~~~g~~~g~~~~~l~ 50 (234)
||+|++.+....+++++|+.+++..+.. +... ..+..+..++|+++ .|+
T Consensus 164 ~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~L~ 242 (496)
T PLN02576 164 LIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQ-TLP 242 (496)
T ss_pred HHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHH-HHH
Confidence 5899999999999999999986544321 1100 01123445677886 688
Q ss_pred HHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEecCEEEEcCChhhHhhhCCCcccCchHHH
Q 026733 51 GPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPGIKRLLPSSWREMKFFN 128 (234)
Q Consensus 51 ~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g-~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~ 128 (234)
++|++.+ | ++|++|++|++|+..++ + .+.|.+.. .+| +.+.||+||+|+|+..+..+++.. .....+
T Consensus 243 ~~la~~l---~~~~i~l~~~V~~I~~~~~--~---~~~v~~~~-~~g~~~~~ad~VI~a~P~~~l~~ll~~~--~~~~~~ 311 (496)
T PLN02576 243 DALAKRL---GKDKVKLNWKVLSLSKNDD--G---GYSLTYDT-PEGKVNVTAKAVVMTAPLYVVSEMLRPK--SPAAAD 311 (496)
T ss_pred HHHHHhh---CcCcEEcCCEEEEEEECCC--C---cEEEEEec-CCCceeEEeCEEEECCCHHHHHHHhccc--CHHHHH
Confidence 8888776 4 68999999999998763 2 23454431 244 468999999999999999998752 223456
Q ss_pred HhhcCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCc--ccccCCCCcc---hhhhcccCCccccccCCCceEEEE
Q 026733 129 NIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDN--LLYTPDADFS---CFADLALTSPEDYYREGQGSLLQC 203 (234)
Q Consensus 129 ~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~---~~~~~~~~~p~~~~~~g~~~~~~~ 203 (234)
.+.++++.++.+|+++|+++....... ... .... ++..+..... +.. .+...| +..|++ ..++..
T Consensus 312 ~l~~~~~~~~~~v~l~~~~~~~~~~~~-----~~~--~~~~~g~l~~~~~~~~~lg~~~-~s~~~p-~~~~~~-~~~l~~ 381 (496)
T PLN02576 312 ALPEFYYPPVAAVTTSYPKEAVKRERL-----IDG--PLEGFGQLHPRKQGVKTLGTIY-SSSLFP-DRAPEG-RVLLLN 381 (496)
T ss_pred HhccCCCCceEEEEEEEchHHcccccc-----cCC--CCCceEEEccCCCCCceEEEEe-ecCcCC-CCCCCC-CEEEEE
Confidence 677888899999999999854210000 000 0111 1111111100 110 011123 133433 344555
Q ss_pred Eee--CCCCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 204 VLT--PGDPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 204 ~~~--~~~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
++. .++.+..+++|++++.++++|.++++
T Consensus 382 ~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g 412 (496)
T PLN02576 382 YIGGSRNTGIASASEEELVEAVDRDLRKLLL 412 (496)
T ss_pred EECCCCCcccccCCHHHHHHHHHHHHHHHhC
Confidence 554 23578889999999999999999986
No 17
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.40 E-value=1.5e-11 Score=108.79 Aligned_cols=187 Identities=16% Similarity=0.107 Sum_probs=120.3
Q ss_pred CccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-
Q 026733 33 TEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP- 111 (234)
Q Consensus 33 ~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~- 111 (234)
....-.+|++|+++ .++.++++.+++.|++|.+++.|++|.+++ | +++||+++ +|+++.+-.||||+.++
T Consensus 251 ~~~g~~~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~---g--ka~GV~L~---dG~ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 251 GHKGGWGYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS---G--KAVGVRLA---DGTEVRSKIVVSNATPWD 321 (561)
T ss_pred ccCCcccCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC---C--eEEEEEec---CCcEEEeeeeecCCchHH
Confidence 33456899999998 699999999999999999999999999997 6 89999995 99999999999998876
Q ss_pred hHhhhCCCcccCchHHHHhhcCCCC-cE----EEEEEEe----cCccchhhh----hHHHHHhhh--hcCCCcccccCCC
Q 026733 112 GIKRLLPSSWREMKFFNNIYALVGV-PV----VTVQLRY----NGWVTELQD----LERSRQLRR--ALGLDNLLYTPDA 176 (234)
Q Consensus 112 ~~~~Ll~~~~~~~~~~~~~~~l~~~-~~----~~v~l~~----d~~~~~~~~----~~~~~~l~~--~~~~~~~~~~~~~ 176 (234)
++.+|+|.+...++. .++.+.+. ++ +..++.. +.|+-+++. ..++.+.-+ .-+..+-+..+.+
T Consensus 322 Tf~kLlp~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~p 399 (561)
T KOG4254|consen 322 TFEKLLPGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRP 399 (561)
T ss_pred HHHHhCCCccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCC
Confidence 688999988766542 34444322 11 1122221 122211110 000111100 0001111111122
Q ss_pred Ccchhhhc-ccCCccccccCCCceEEEEEeeCC-CCCC-------CCCHHHHHHHHHHHHHhhCCCC
Q 026733 177 DFSCFADL-ALTSPEDYYREGQGSLLQCVLTPG-DPYM-------PLPNDEIIRRVAKQLYFHHPKV 234 (234)
Q Consensus 177 ~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~~~-~~~~-------~~~~eei~~~~l~~L~~~~P~~ 234 (234)
. ++-.+ +..|| .++|+| ++++.+++... +.|. +-.+++.++++++.+++.+|++
T Consensus 400 v--I~~siPS~lDp-tlappg-~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgf 462 (561)
T KOG4254|consen 400 V--IELSIPSSLDP-TLAPPG-KHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGF 462 (561)
T ss_pred e--EEEecccccCC-CcCCCC-ceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCc
Confidence 1 22222 45678 488888 67877765432 3333 3346889999999999999985
No 18
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.15 E-value=5.2e-11 Score=105.63 Aligned_cols=204 Identities=22% Similarity=0.184 Sum_probs=118.3
Q ss_pred chHHHHHcCCCCcccccHHHHHHHHHHHhcCCcc--ceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCC
Q 026733 2 WDPVAYALGFIDCDNISARCMLTIFALFATKTEA--SLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA 79 (234)
Q Consensus 2 w~pl~~~~~~~~~~~~SA~~~~~~l~~~~~~~~~--~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~ 79 (234)
|.++....++..+...++.+....+..+...... ...+-...+. ..+...+...++..|++|++|++|++|..++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-- 239 (450)
T PF01593_consen 163 FRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGM-GGLSLALALAAEELGGEIRLNTPVTRIERED-- 239 (450)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEET-TTTHHHHHHHHHHHGGGEESSEEEEEEEEES--
T ss_pred HHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecc-cchhHHHHHHHhhcCceeecCCcceeccccc--
Confidence 3455556666667777777433333322111100 0111100011 2356677788888899999999999999997
Q ss_pred CCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhh--hCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHH
Q 026733 80 NAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR--LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLER 157 (234)
Q Consensus 80 ~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~--Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~ 157 (234)
+ ++ .|.+ .+|+.+.||+||+|+|+..+.+ +.|..+. ...+.+.++.+.++..|++.++++..+..
T Consensus 240 -~--~v-~v~~---~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~--~~~~a~~~~~~~~~~~v~l~~~~~~~~~~---- 306 (450)
T PF01593_consen 240 -G--GV-TVTT---EDGETIEADAVISAVPPSVLKNILLLPPLPE--DKRRAIENLPYSSVSKVFLGFDRPFWPPD---- 306 (450)
T ss_dssp -S--EE-EEEE---TTSSEEEESEEEE-S-HHHHHTSEEESTSHH--HHHHHHHTEEEEEEEEEEEEESSGGGGST----
T ss_pred -c--cc-cccc---ccceEEecceeeecCchhhhhhhhhcccccc--cccccccccccCcceeEEEeeeccccccc----
Confidence 3 44 4555 4888999999999999999884 5554221 12344567777788999999999765110
Q ss_pred HHHhhhhcCCCcccccCC-CCcchhhhcccCCccccccCCCceEEEEEeeCC-CCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 158 SRQLRRALGLDNLLYTPD-ADFSCFADLALTSPEDYYREGQGSLLQCVLTPG-DPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~-~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
. ....++..+. ....++...+...+ . ++...+..++..+. ..+..+++|++++.++++|++++|
T Consensus 307 ---~----~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~ 372 (450)
T PF01593_consen 307 ---I----DFFGILYSDGFSPIGYVSDPSKFPG--R--PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILP 372 (450)
T ss_dssp ---T----TESEEEEESSTSSEEEEEEECCTTS--C--TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred ---c----cccceecccCccccccccccccCcc--c--ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccc
Confidence 0 0112222222 11111111111111 1 22234444444433 477889999999999999999998
No 19
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=3.9e-10 Score=103.78 Aligned_cols=178 Identities=19% Similarity=0.219 Sum_probs=105.2
Q ss_pred eeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhC
Q 026733 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLL 117 (234)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll 117 (234)
+.+++|+++ .|+++|++.++++||+|+++++|++|.+++ | +.+++.. .+|+.+++|.||+++++.....+.
T Consensus 216 ~~~p~GG~~-al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~---g--~g~~~~~---~~g~~~~ad~vv~~~~~~~~~~l~ 286 (487)
T COG1233 216 VFYPRGGMG-ALVDALAELAREHGGEIRTGAEVSQILVEG---G--KGVGVRT---SDGENIEADAVVSNADPALLARLL 286 (487)
T ss_pred eeeeeCCHH-HHHHHHHHHHHHcCCEEECCCceEEEEEeC---C--cceEEec---cccceeccceeEecCchhhhhhhh
Confidence 667889997 799999999999999999999999999998 5 6566665 356788999999999995556566
Q ss_pred CCcccCchHHHHhhcCCCCcEEEEEEEecCcc---chhh---hhHHHHHhhhhcCCCcccccCCCCcchhhhc-ccCCcc
Q 026733 118 PSSWREMKFFNNIYALVGVPVVTVQLRYNGWV---TELQ---DLERSRQLRRALGLDNLLYTPDADFSCFADL-ALTSPE 190 (234)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~---~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ 190 (234)
++..+ ..+. -...+..+.+..++.++..+ .+.. .....+.+.. ..+. .....+ +++.+. +..||+
T Consensus 287 ~~~~~-~~~~--~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~~--~~~v~~ps~~Dps 358 (487)
T COG1233 287 GEARR-PRYR--GSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEE--AFDD-RAGRPP--PLYVSIPSLTDPS 358 (487)
T ss_pred hhhhh-hccc--cchhhhhHHHHhccCCCCCCcchhhcceEecCCcHHHHHH--Hhhh-hcCCCC--ceEEeCCCCCCCc
Confidence 54222 0000 01111224444455555421 0000 0000011111 1111 111111 344443 567884
Q ss_pred ccccCCCce-EEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 026733 191 DYYREGQGS-LLQCVLTPGDPYMPLPNDEIIRRVAKQLYFHHPKV 234 (234)
Q Consensus 191 ~~~~~g~~~-~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~P~~ 234 (234)
.+|+|+.+ +..+...+...+++..++++.+. +.++++.+|++
T Consensus 359 -~AP~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~ 401 (487)
T COG1233 359 -LAPEGKHSTFAQLVPVPSLGDYDELKESLADA-IDALEELAPGL 401 (487)
T ss_pred -cCCCCCcceeeeeeecCcCCChHHHHHHHHHH-HHHHhhcCCCc
Confidence 89998542 23333334334445566777777 77888888864
No 20
>PLN03000 amine oxidase
Probab=98.69 E-value=2.2e-07 Score=89.82 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=100.3
Q ss_pred ecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHh----h
Q 026733 40 MLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIK----R 115 (234)
Q Consensus 40 ~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~----~ 115 (234)
..+|+++ .|+++|++.| .|++|++|++|...++ + +.|.. +++.+.||+||+|+|+..++ .
T Consensus 375 ~v~GG~~-~LieaLa~~L-----~I~Ln~~Vt~I~~~~d--g----V~V~~----~~~~~~AD~VIvTVPlgVLk~~~I~ 438 (881)
T PLN03000 375 FLPGGNG-RLVQALAENV-----PILYEKTVQTIRYGSN--G----VKVIA----GNQVYEGDMVLCTVPLGVLKNGSIK 438 (881)
T ss_pred EeCCCHH-HHHHHHHhhC-----CcccCCcEEEEEECCC--e----EEEEE----CCcEEEeceEEEcCCHHHHhhCcee
Confidence 4667886 6888888776 3999999999998763 3 23433 44689999999999999988 4
Q ss_pred hCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcc--ccc-C--CCCcchhhhcccCCcc
Q 026733 116 LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNL--LYT-P--DADFSCFADLALTSPE 190 (234)
Q Consensus 116 Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~~--~~~-~--~~~~~~~~~~~~~~p~ 190 (234)
+.|..+ ....+.+.++.+-.+.-|++.|++++.+. ..+.+ +.. . ...+..+.
T Consensus 439 F~PpLP--~~K~~AI~rL~~G~l~KViL~Fd~~FW~~-------------d~~~FG~l~~~~~~rg~~~~f~-------- 495 (881)
T PLN03000 439 FVPELP--QRKLDCIKRLGFGLLNKVAMLFPYVFWST-------------DLDTFGHLTEDPNYRGEFFLFY-------- 495 (881)
T ss_pred eCCCCC--HHHHHHHHcCCCcceEEEEEEeCCccccC-------------CCCceeEEecCCCCCceeEEEe--------
Confidence 455422 22345678888889999999999976410 11111 101 0 01111111
Q ss_pred ccccCCCceEEEEEee--CCCCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 191 DYYREGQGSLLQCVLT--PGDPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 191 ~~~~~g~~~~~~~~~~--~~~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
++.+..++.++..++. .++.+..++++++++.++++|+++|+
T Consensus 496 s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg 539 (881)
T PLN03000 496 SYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYE 539 (881)
T ss_pred CCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhC
Confidence 1222112335554443 33467789999999999999999995
No 21
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.67 E-value=1.6e-07 Score=87.05 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=76.6
Q ss_pred HHcCCCCcccccHHHHHHHHHHHh----cCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCc
Q 026733 7 YALGFIDCDNISARCMLTIFALFA----TKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAE 82 (234)
Q Consensus 7 ~~~~~~~~~~~SA~~~~~~l~~~~----~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~ 82 (234)
+..+|...+..||+.+...+++|. +..+.+.+.+.+...-+.++.||.++|+++||+|++|++|++|..+.+ ++.
T Consensus 182 w~t~FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d-~~~ 260 (576)
T PRK13977 182 WRTMFAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDIT-GGK 260 (576)
T ss_pred HHHHHCCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CCc
Confidence 344467779999999999999874 334455666666666689999999999999999999999999999621 111
Q ss_pred ceEEEEEEeecCCCe---EEecCEEEEcCC
Q 026733 83 TYVKGLAMSKATDKK---VVQADAYVAACD 109 (234)
Q Consensus 83 ~~~~~v~~~~~~~g~---~~~aD~VV~a~~ 109 (234)
++|+||.+.+.++++ ....|.||.+..
T Consensus 261 ~~VtgI~~~~~~~~~~I~l~~~DlVivTnG 290 (576)
T PRK13977 261 KTATAIHLTRNGKEETIDLTEDDLVFVTNG 290 (576)
T ss_pred eEEEEEEEEeCCceeEEEecCCCEEEEeCC
Confidence 279999886322222 345999998865
No 22
>PLN02676 polyamine oxidase
Probab=98.66 E-value=3.5e-07 Score=84.31 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=99.6
Q ss_pred CCCCcccchHHHHHHHHHC------CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhh
Q 026733 42 KGSPDVYLSGPIRKYITDK------GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR 115 (234)
Q Consensus 42 ~g~~~~~l~~~l~~~l~~~------Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~ 115 (234)
+++++ .|++.|++.+.+. +.+|++|++|++|..+++ + +.|.+ .+|+++.||+||+|+|+..+++
T Consensus 220 ~~G~~-~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~--g----V~V~~---~~G~~~~a~~VIvtvPl~vLk~ 289 (487)
T PLN02676 220 PRGYE-SLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKN--G----VTVKT---EDGSVYRAKYVIVSVSLGVLQS 289 (487)
T ss_pred CCCHH-HHHHHHHhhcccccccccCCCceecCCEeeEEEEcCC--c----EEEEE---CCCCEEEeCEEEEccChHHhcc
Confidence 45665 5788888876543 357999999999998863 3 34555 4788999999999999999875
Q ss_pred -hCCCcc-cCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcccccCC--CCcchhhhcccCCccc
Q 026733 116 -LLPSSW-REMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPD--ADFSCFADLALTSPED 191 (234)
Q Consensus 116 -Ll~~~~-~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~ 191 (234)
.+.-.+ .+....+.++++..-...-+.+.|++|+.+.. . ....+.+... +...++... +.
T Consensus 290 ~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~-------~----~~~~~~~~~~~~~~~~~~~~~---~~-- 353 (487)
T PLN02676 290 DLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSG-------P----GTEFFLYAHERRGYYPFWQHL---EN-- 353 (487)
T ss_pred CceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCC-------C----Cceeeeeeccccccchhhhhc---cc--
Confidence 222111 11223345677777789999999999865210 0 0001111110 111111111 11
Q ss_pred cccCCCceEEEEEeeC--CCCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 192 YYREGQGSLLQCVLTP--GDPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 192 ~~~~g~~~~~~~~~~~--~~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
.+++ ..++.+++.. +..+..+++++..+.++++|+++||
T Consensus 354 -~~~~-~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g 394 (487)
T PLN02676 354 -EYPG-SNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFG 394 (487)
T ss_pred -CCCC-CCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhC
Confidence 0112 2344444432 2356678999999999999999996
No 23
>PLN02529 lysine-specific histone demethylase 1
Probab=98.63 E-value=9.2e-07 Score=84.79 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=96.4
Q ss_pred eecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhh--
Q 026733 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL-- 116 (234)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~L-- 116 (234)
....|+++ .|+++|++ +..|++|++|++|...++ | +.|.. +++.+.||+||+|+|+..+++.
T Consensus 350 ~~i~GG~~-~Li~aLA~-----~L~IrLnt~V~~I~~~~d--G----VtV~t----~~~~~~AD~VIVTVPlgVLk~~~I 413 (738)
T PLN02529 350 CFLAGGNW-RLINALCE-----GVPIFYGKTVDTIKYGND--G----VEVIA----GSQVFQADMVLCTVPLGVLKKRTI 413 (738)
T ss_pred EEECCcHH-HHHHHHHh-----cCCEEcCCceeEEEEcCC--e----EEEEE----CCEEEEcCEEEECCCHHHHHhccc
Confidence 34566775 56776665 446999999999999863 3 23432 5678999999999999998753
Q ss_pred --CCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCc--cccc---CCCCcchhhhcccCCc
Q 026733 117 --LPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDN--LLYT---PDADFSCFADLALTSP 189 (234)
Q Consensus 117 --l~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~--~~~~---~~~~~~~~~~~~~~~p 189 (234)
.|.. +....+.++++.+-++..|+|.|++++.+. ..+. ++.. ..+.+.++ .+..
T Consensus 414 ~F~PpL--P~~K~~AI~rL~yG~v~KV~L~F~~~FW~~-------------~~~~fG~l~~~~~~~g~~~~~--~~~~-- 474 (738)
T PLN02529 414 RFEPEL--PRRKLAAIDRLGFGLLNKVAMVFPSVFWGE-------------ELDTFGCLNESSNKRGEFFLF--YGYH-- 474 (738)
T ss_pred cCCCCC--CHHHHHHHHcCCCceeEEEEEEeCCccccC-------------CCCceEEEeccCCCCceEEEE--ecCC--
Confidence 2322 222345678888889999999999975310 0011 1100 01111111 1100
Q ss_pred cccccCCCceEEEEEee--CCCCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 190 EDYYREGQGSLLQCVLT--PGDPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 190 ~~~~~~g~~~~~~~~~~--~~~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
.+.+ +.++..++. .+..+..++++++++.++++|+++|+
T Consensus 475 ---~~~g-gpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifg 515 (738)
T PLN02529 475 ---TVSG-GPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYN 515 (738)
T ss_pred ---CCCC-CCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 0112 233434433 33467788999999999999999985
No 24
>PLN02268 probable polyamine oxidase
Probab=98.59 E-value=1.2e-06 Score=79.30 Aligned_cols=152 Identities=15% Similarity=0.083 Sum_probs=91.2
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhh-CCCcc-cCchHHHH
Q 026733 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL-LPSSW-REMKFFNN 129 (234)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~L-l~~~~-~~~~~~~~ 129 (234)
.+.+.|. .|++|++|++|++|...++ + +.|.+ .+|+.+.||.||+|+|+..++++ +.-.+ .+....+.
T Consensus 202 ~l~~~l~-~~~~i~~~~~V~~i~~~~~--~----v~v~~---~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~a 271 (435)
T PLN02268 202 PVINTLA-KGLDIRLNHRVTKIVRRYN--G----VKVTV---EDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEA 271 (435)
T ss_pred HHHHHHh-ccCceeCCCeeEEEEEcCC--c----EEEEE---CCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHH
Confidence 4444443 3678999999999998763 3 34555 37778999999999999988753 32111 11222344
Q ss_pred hhcCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcccccCCCCcchhhhcccCCccccccCCCceEEEEEeeC--
Q 026733 130 IYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTP-- 207 (234)
Q Consensus 130 ~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~-- 207 (234)
++++.+-++.-+.+.|++++.+. . .....+.........+.+. .+ ..+ ..++.+++..
T Consensus 272 i~~~~~g~~~Kv~l~f~~~fw~~--------~----~~~g~~~~~~~~~~~~~~~---~~----~~g-~~~l~~~~~g~~ 331 (435)
T PLN02268 272 ISDLGVGIENKIALHFDSVFWPN--------V----EFLGVVAPTSYGCSYFLNL---HK----ATG-HPVLVYMPAGRL 331 (435)
T ss_pred HHhCCccceeEEEEEeCCCCCCC--------C----ceeeccCCCCCCceEEEec---cc----CCC-CCEEEEEeccHH
Confidence 66777778888999999875310 0 0001111111111111110 00 112 2344444432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCC
Q 026733 208 GDPYMPLPNDEIIRRVAKQLYFHHPK 233 (234)
Q Consensus 208 ~~~~~~~~~eei~~~~l~~L~~~~P~ 233 (234)
+..+..++++++.+.++++|.++||.
T Consensus 332 a~~~~~~~~~e~~~~v~~~L~~~~~~ 357 (435)
T PLN02268 332 ARDIEKLSDEAAANFAMSQLKKMLPD 357 (435)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHcCC
Confidence 34677889999999999999999984
No 25
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.57 E-value=1.5e-06 Score=83.98 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=99.8
Q ss_pred eeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhh--
Q 026733 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR-- 115 (234)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~-- 115 (234)
.....|+++ .|+++|++.+ .|++|++|++|...++ + + .| . .+|+.+.||+||+|+|+..+++
T Consensus 429 ~~~v~GG~~-~Li~aLa~~L-----~I~ln~~V~~I~~~~d--g---V-~V-~---~~G~~~~AD~VIvTvPl~vLk~~~ 492 (808)
T PLN02328 429 HCFIPGGND-TFVRELAKDL-----PIFYERTVESIRYGVD--G---V-IV-Y---AGGQEFHGDMVLCTVPLGVLKKGS 492 (808)
T ss_pred EEEECCcHH-HHHHHHHhhC-----CcccCCeeEEEEEcCC--e---E-EE-E---eCCeEEEcCEEEECCCHHHHhhcc
Confidence 445667876 6888888765 3999999999999763 3 2 23 2 2788899999999999998874
Q ss_pred --hCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCC--ccccc-CC--CCcchhhhcccCC
Q 026733 116 --LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLD--NLLYT-PD--ADFSCFADLALTS 188 (234)
Q Consensus 116 --Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~-~~--~~~~~~~~~~~~~ 188 (234)
+.|.. +....+.++++.+-++..|.|.|++++.+. ..+ .++.. .. +.+.+|.+.+
T Consensus 493 I~F~P~L--P~~K~~AI~~l~yG~~~KV~L~F~~~FW~~-------------~~d~fG~l~~d~s~rG~~~lf~s~s--- 554 (808)
T PLN02328 493 IEFYPEL--PQRKKDAIQRLGYGLLNKVALLFPYNFWGG-------------EIDTFGHLTEDPSMRGEFFLFYSYS--- 554 (808)
T ss_pred cccCCCC--CHHHHHHHHcCCCcceEEEEEEeCCccccC-------------CCCceEEEeecCCCCceEEEEecCC---
Confidence 33432 122345688999889999999999876410 011 11111 00 1111111110
Q ss_pred ccccccCCCceEEEEEeeC--CCCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 189 PEDYYREGQGSLLQCVLTP--GDPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 189 p~~~~~~g~~~~~~~~~~~--~~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
...+ +.++..++.. +..+..++++++++.++++|+++|+
T Consensus 555 ----~~~G-~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifg 595 (808)
T PLN02328 555 ----SVSG-GPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFH 595 (808)
T ss_pred ----CCCC-CcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 0122 3444444442 2366788999999999999999885
No 26
>PLN02568 polyamine oxidase
Probab=98.55 E-value=1.7e-06 Score=80.69 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=100.6
Q ss_pred cCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhh----
Q 026733 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL---- 116 (234)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~L---- 116 (234)
.+|+++ .|++.|++.+. +.+|++|++|++|..+++ + +.|.+ .+|+.+.||+||+|+|+..+++-
T Consensus 237 i~gG~~-~Li~~La~~L~--~~~I~ln~~V~~I~~~~~--~----v~V~~---~dG~~~~aD~VIvTvPl~vL~~~~~~~ 304 (539)
T PLN02568 237 IAKGYL-SVIEALASVLP--PGTIQLGRKVTRIEWQDE--P----VKLHF---ADGSTMTADHVIVTVSLGVLKAGIGED 304 (539)
T ss_pred ECCcHH-HHHHHHHhhCC--CCEEEeCCeEEEEEEeCC--e----EEEEE---cCCCEEEcCEEEEcCCHHHHhhccccc
Confidence 456665 57888888774 568999999999998762 2 34555 37888999999999999998852
Q ss_pred ---C-CCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcccccCCC------Ccchhhhccc
Q 026733 117 ---L-PSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDA------DFSCFADLAL 186 (234)
Q Consensus 117 ---l-~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~ 186 (234)
+ |. .+....+.++++..-.+.-|++.|++++..- ...+... ..-.+++..++ ....+...
T Consensus 305 ~i~F~P~--LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-- 374 (539)
T PLN02568 305 SGLFSPP--LPDFKTDAISRLGFGVVNKLFVELSPRPDGS-----PEDVAKF-PFLQMAFHRSDSEARHDKIPWWMRR-- 374 (539)
T ss_pred cceecCC--CCHHHHHHHHhcCCceeeEEEEEecCCCCCc-----ccccccc-cceeeeecccchhhhcccccchhhc--
Confidence 2 22 1222345677888778899999999975310 0000000 00011111110 00000000
Q ss_pred CCccccccC-CCceEEEEEeeC--CCCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 187 TSPEDYYRE-GQGSLLQCVLTP--GDPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 187 ~~p~~~~~~-g~~~~~~~~~~~--~~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
+ . ++++. ++..++..++.. +..+..++++++++.+++.|+++|+
T Consensus 375 ~-~-~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g 421 (539)
T PLN02568 375 T-A-SICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLK 421 (539)
T ss_pred c-c-cccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcC
Confidence 0 0 01111 113344445442 3466789999999999999999996
No 27
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.50 E-value=2.8e-06 Score=76.09 Aligned_cols=162 Identities=17% Similarity=0.091 Sum_probs=105.0
Q ss_pred CCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcc
Q 026733 42 KGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSW 121 (234)
Q Consensus 42 ~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~ 121 (234)
.|+++ .|.+++++. .|..|.++++|.+|...++ | +.|.. .+.+...+|++|+++|+..+.++-=+..
T Consensus 205 ~GGmd-~la~Afa~q---l~~~I~~~~~V~rI~q~~~--g----V~Vt~---~~~~~~~ad~~i~tiPl~~l~qI~f~P~ 271 (450)
T COG1231 205 LGGMD-QLAEAFAKQ---LGTRILLNEPVRRIDQDGD--G----VTVTA---DDVGQYVADYVLVTIPLAILGQIDFAPL 271 (450)
T ss_pred CccHH-HHHHHHHHH---hhceEEecCceeeEEEcCC--e----EEEEe---CCcceEEecEEEEecCHHHHhhcccCCC
Confidence 36664 566666654 5678999999999999873 3 33444 2447889999999999998877421112
Q ss_pred cCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcccccCCCCcchhhhcccCCccccccCCCceEE
Q 026733 122 REMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLL 201 (234)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~ 201 (234)
....+.+.++...+.+.+-+.+.|++|+.+... .+....+...+ ..+.+. |+....+|.+.++
T Consensus 272 l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~-----------~l~G~~~tD~~--~~~i~~----~s~~~~~G~gVl~ 334 (450)
T COG1231 272 LPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAG-----------ILGGESLTDLG--LGFISY----PSAPFADGPGVLL 334 (450)
T ss_pred CCHHHHHHhcCcCcchheeeeeecCchhhhhcc-----------cCCceEeecCC--cceEec----CccccCCCceEEE
Confidence 333455667788888999999999999863210 12233333222 122211 2111123334455
Q ss_pred EEEe--eCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 026733 202 QCVL--TPGDPYMPLPNDEIIRRVAKQLYFHHPK 233 (234)
Q Consensus 202 ~~~~--~~~~~~~~~~~eei~~~~l~~L~~~~P~ 233 (234)
..+. ..+..|..++.++.++.++..+.++||+
T Consensus 335 g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~ 368 (450)
T COG1231 335 GSYAFGDDALVIDALPEAERRQKVLARLAKLFGD 368 (450)
T ss_pred eeeeccccceeEecCCHHHHHHHHHHhHhhhCCh
Confidence 5333 3556888999999999999999999993
No 28
>PLN02976 amine oxidase
Probab=98.38 E-value=5.8e-06 Score=83.28 Aligned_cols=161 Identities=13% Similarity=0.104 Sum_probs=95.2
Q ss_pred cCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCC------CCcceEEEEEEeecCCCeEEecCEEEEcCChhhHh
Q 026733 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA------NAETYVKGLAMSKATDKKVVQADAYVAACDVPGIK 114 (234)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~------~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~ 114 (234)
.+|+++ .|+++|++.+ .|++|++|++|...+++ ++ .-+.|.+ .+|+.+.||+||+|+|+..++
T Consensus 931 IkGGYq-qLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~--dGVtVtT---sDGetftADaVIVTVPLGVLK 999 (1713)
T PLN02976 931 IKGGYS-NVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSR--KKVKVST---SNGSEFLGDAVLITVPLGCLK 999 (1713)
T ss_pred eCCCHH-HHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCC--CcEEEEE---CCCCEEEeceEEEeCCHHHhh
Confidence 577776 5778887755 49999999999984200 01 1133444 488889999999999999887
Q ss_pred h--h-C-CCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcccccCC--CC-cchhhhcccC
Q 026733 115 R--L-L-PSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPD--AD-FSCFADLALT 187 (234)
Q Consensus 115 ~--L-l-~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~-~~~~~~~~~~ 187 (234)
. + + |.. +....+.+.++..-.+.-|+|.|++++.+. ..+.+-.... +. ..++..++..
T Consensus 1000 ag~I~FsPPL--Pe~KqaAIqrLgfG~lnKV~LeFdrpFW~~-------------d~d~FG~s~edtdlrG~~~~~wnlr 1064 (1713)
T PLN02976 1000 AETIKFSPPL--PDWKYSSIQRLGFGVLNKVVLEFPEVFWDD-------------SVDYFGATAEETDLRGQCFMFWNVK 1064 (1713)
T ss_pred hcccccCCcc--cHHHHHHHHhhccccceEEEEEeCCccccC-------------CCCccccccccCCCCceEEEeccCC
Confidence 3 1 2 321 112234467777668888999999976411 0000000000 00 0011111111
Q ss_pred CccccccCCCceEEEEEee-CCCCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 188 SPEDYYREGQGSLLQCVLT-PGDPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 188 ~p~~~~~~g~~~~~~~~~~-~~~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
.+.+...++.++.. .+..+..++++++++.+++.|+++||
T Consensus 1065 -----~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG 1105 (1713)
T PLN02976 1065 -----KTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFG 1105 (1713)
T ss_pred -----CCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcC
Confidence 11222334433332 33466678999999999999999997
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=6.5e-06 Score=75.97 Aligned_cols=188 Identities=19% Similarity=0.155 Sum_probs=110.0
Q ss_pred HHcCCCCcccccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEE
Q 026733 7 YALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVK 86 (234)
Q Consensus 7 ~~~~~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~ 86 (234)
+...+....+-..+.+|.....|.... .-....++.. .+...++. |..|+++++|.+|...++ + . .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~G~~-~v~~~la~-----~l~I~~~~~v~~i~~~~~--~--~-~ 248 (501)
T KOG0029|consen 183 LELTFIAHLENASARLWDQDELFGGGG---IHLLMKGGYE-PVVNSLAE-----GLDIHLNKRVRKIKYGDD--G--A-V 248 (501)
T ss_pred HHHHhhccHhHhhHHhhhhhhhccccc---chhHhhCCcc-HHHhhcCC-----CcceeeceeeEEEEEecC--C--c-e
Confidence 334444444444444454444444332 1122444554 24444444 999999999999999874 4 3 2
Q ss_pred EEEEeecCCCeEEecCEEEEcCChhhHhh----hCCCcccCchHHHHhhcCCCCcEEEEEEEecCccchhhhhHHHHHhh
Q 026733 87 GLAMSKATDKKVVQADAYVAACDVPGIKR----LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLR 162 (234)
Q Consensus 87 ~v~~~~~~~g~~~~aD~VV~a~~~~~~~~----Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~~~~~~~~~~~~~~l~ 162 (234)
.+.+. ++..+.+|+||+++|...++. +.|. .+....+.++++..-.+.-|.|.|++.+.. +
T Consensus 249 ~~~~~---~~~~~~~d~vvvt~pl~vLk~~~i~F~P~--Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~-~--------- 313 (501)
T KOG0029|consen 249 KVTVE---TGDGYEADAVVVTVPLGVLKSGLIEFSPP--LPRWKQEAIDRLGFGLVNKVILEFPRVFWD-Q--------- 313 (501)
T ss_pred EEEEE---CCCeeEeeEEEEEccHHHhccCceeeCCC--CcHHHHHHHHhcCCCceeEEEEEeccccCC-C---------
Confidence 34442 444589999999999998876 2232 222355678899877999999999987651 0
Q ss_pred hhcCCCcccccCCCCcchhhh---cccCCccccccCCCceEEEEEee-CCCCCCCCCHHHHHHHHHHHHHhhCC
Q 026733 163 RALGLDNLLYTPDADFSCFAD---LALTSPEDYYREGQGSLLQCVLT-PGDPYMPLPNDEIIRRVAKQLYFHHP 232 (234)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~g~~~~~~~~~~-~~~~~~~~~~eei~~~~l~~L~~~~P 232 (234)
..+.+.. .+..+.... +-...|. + . ...++..++. .++.+..++++++++.++..|+++||
T Consensus 314 ---~~d~fg~--~~~~~~~~~~~~f~~~~~~--~-~-~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~ 378 (501)
T KOG0029|consen 314 ---DIDFFGI--VPETSVLRGLFTFYDCKPV--A-G-HPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFG 378 (501)
T ss_pred ---CcCeEEE--ccccccccchhhhhhcCcc--C-C-CCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 1121111 111001100 0001121 1 1 1233333333 45788899999999999999999998
No 30
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.33 E-value=3.3e-06 Score=73.24 Aligned_cols=130 Identities=16% Similarity=0.069 Sum_probs=91.7
Q ss_pred CchHHHHHcCCCCcccccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCC----cEEEcCceeeEEEec
Q 026733 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKG----GRFHLRWGCREILYD 76 (234)
Q Consensus 1 ~w~pl~~~~~~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~G----g~i~~~~~V~~i~~~ 76 (234)
+|.||..+..+.+..+++..-++.++..+.. +|... +++.+.--.+..+-.+++++.+ ++|+++++|.+|..-
T Consensus 170 ~l~P~~aaiwstp~~d~~~~pa~~~~~f~~n--hGll~-l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rl 246 (447)
T COG2907 170 FLQPLVAAIWSTPLADASRYPACNFLVFTDN--HGLLY-LPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRL 246 (447)
T ss_pred hHHHHHHHHhcCcHhhhhhhhHHHHHHHHhc--cCcee-cCCCCceeEcccchHHHHHHHhccccceeecCCceeeeeeC
Confidence 6999999999999999999988887754433 23433 4555555456666666666554 679999999999988
Q ss_pred cCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhcCCCCcEEEEEEE
Q 026733 77 KAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLR 144 (234)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~ 144 (234)
.+ | |++.. .+|+...+|+||.++.+.....||++... ...+-+..+.|+..-.|..-
T Consensus 247 Pd--G------v~l~~-~~G~s~rFD~vViAth~dqAl~mL~e~sp--~e~qll~a~~Ys~n~aVlht 303 (447)
T COG2907 247 PD--G------VVLVN-ADGESRRFDAVVIATHPDQALALLDEPSP--EERQLLGALRYSANTAVLHT 303 (447)
T ss_pred CC--c------eEEec-CCCCccccceeeeecChHHHHHhcCCCCH--HHHHHHHhhhhhhceeEEee
Confidence 73 5 33321 36888899999999999887778886322 22345667777655555443
No 31
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.16 E-value=1.6e-05 Score=72.38 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=58.1
Q ss_pred ceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 36 SLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 36 ~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
+.+.|+.++.+ .|++++++.+...||++++|++|++|..+++ | ++++|++ .+|+.+.|+.||++...
T Consensus 222 ~p~~yp~gG~g-~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~--g--~~~~V~~---~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 222 SPFIYPLYGLG-GLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN--G--KVCGVKS---EGGEVAKCKLVICDPSY 288 (443)
T ss_pred CcceeeCCCHH-HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCC--C--eEEEEEE---CCCcEEECCEEEECccc
Confidence 35678889987 6999999999999999999999999999863 5 7888988 48999999999997553
No 32
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.77 E-value=7e-05 Score=67.48 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=89.0
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhh----hCCCcccCchHHHHhhcCCCCc
Q 026733 62 GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR----LLPSSWREMKFFNNIYALVGVP 137 (234)
Q Consensus 62 g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~----Ll~~~~~~~~~~~~~~~l~~~~ 137 (234)
.+++++++|.+|..++. + + +.|++ .||+.+.||+||++++.-.+++ |+...... .-.+.|.+|..=.
T Consensus 244 ~~~~~~~rv~~I~~~~~--~--~-v~l~c---~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~-~K~~AIe~lgfGt 314 (498)
T KOG0685|consen 244 KRIHLNTRVENINWKNT--G--E-VKLRC---SDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPA-EKQRAIERLGFGT 314 (498)
T ss_pred hhhcccccceeeccCCC--C--c-EEEEE---eCCcEEeccEEEEEeechhhhhhhhhhcCCCCCH-HHHHHHHhccCCc
Confidence 56778899999999963 5 3 34777 4999999999999999888776 54322111 1234577777667
Q ss_pred EEEEEEEecCccchhh-----hhHHHHHhhhhcCCCcccccCCCCcchhhhcccCCccccccCCCceEEEEEeeCC--CC
Q 026733 138 VVTVQLRYNGWVTELQ-----DLERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPG--DP 210 (234)
Q Consensus 138 ~~~v~l~~d~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~--~~ 210 (234)
+.-++|-|..|+.+.. .+...+++.. . +...-.++..+..-.|.+++ .+++...++.. ..
T Consensus 315 v~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e---~------r~~~~~w~~~~~~f~~v~~~----~~vL~gWiaG~~~~~ 381 (498)
T KOG0685|consen 315 VNKIFLEFEEPFWPSDWNGIQLLWLDEDLEE---L------RSTLDAWEEDIMGFQPVSWA----PNVLLGWIAGREARH 381 (498)
T ss_pred cceEEEEccCCCCCCCCceeEEEEecCcHHH---H------hhhhHHHHhhceEEEEcCcc----hhhhheeccCCccee
Confidence 8888999998865221 0000001000 0 00000011111100111122 23555555433 35
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCC
Q 026733 211 YMPLPNDEIIRRVAKQLYFHHPK 233 (234)
Q Consensus 211 ~~~~~~eei~~~~l~~L~~~~P~ 233 (234)
.-.++|||+.+.+...|+++.++
T Consensus 382 me~lsdEev~e~~~~~lr~fl~n 404 (498)
T KOG0685|consen 382 METLSDEEVLEGLTKLLRKFLKN 404 (498)
T ss_pred hhhCCHHHHHHHHHHHHHHhcCC
Confidence 55889999999999999998864
No 33
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.66 E-value=0.00061 Score=62.14 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=72.2
Q ss_pred HHHHcCCCCcccccHHHHHHHHHHHhcCCccc--eeeecCCCCc--ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026733 5 VAYALGFIDCDNISARCMLTIFALFATKTEAS--LLRMLKGSPD--VYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (234)
Q Consensus 5 l~~~~~~~~~~~~SA~~~~~~l~~~~~~~~~~--~~g~~~g~~~--~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (234)
++|+.+|.-=.-.||..+-..+++|..+-.+. .-++-+..+. ++++.||.++|+++||++++|++|+.|.++.+ +
T Consensus 161 ~~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~-~ 239 (500)
T PF06100_consen 161 YMWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDIT-G 239 (500)
T ss_pred HhHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEcc-C
Confidence 35677788888889999999999987654433 1233333333 48999999999999999999999999999743 1
Q ss_pred CcceEEEEEEeecCCCeEE---ecCEEEEcCC
Q 026733 81 AETYVKGLAMSKATDKKVV---QADAYVAACD 109 (234)
Q Consensus 81 ~~~~~~~v~~~~~~~g~~~---~aD~VV~a~~ 109 (234)
+...++++.+.+.+..+.+ +-|.|+.+..
T Consensus 240 ~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~G 271 (500)
T PF06100_consen 240 DKKTATRIHIEQDGKEETIDLGPDDLVFVTNG 271 (500)
T ss_pred CCeeEEEEEEEcCCCeeEEEeCCCCEEEEECC
Confidence 2124667776532222233 3788887754
No 34
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.53 E-value=0.0015 Score=58.37 Aligned_cols=139 Identities=18% Similarity=0.136 Sum_probs=96.2
Q ss_pred chHHHHHcCCCCcccccHHHHHHHHHH----------------HhcCC--------------ccceeeecCCCCcccchH
Q 026733 2 WDPVAYALGFIDCDNISARCMLTIFAL----------------FATKT--------------EASLLRMLKGSPDVYLSG 51 (234)
Q Consensus 2 w~pl~~~~~~~~~~~~SA~~~~~~l~~----------------~~~~~--------------~~~~~g~~~g~~~~~l~~ 51 (234)
-+|||....-.++.++|+...+.-+.. |.+.. +.....-.+|++. .+.+
T Consensus 175 isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle-~lP~ 253 (491)
T KOG1276|consen 175 ISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLE-TLPK 253 (491)
T ss_pred HHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHh-HhHH
Confidence 368888889999999999975442221 11110 1112334566674 7999
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhh
Q 026733 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIY 131 (234)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~~~~~~~~~~~ 131 (234)
++.+.|.+.++.|.++.++..+..... | + +.+.+...+.......++++.++|...+.+|++... ......+.
T Consensus 254 a~~~~L~~~~v~i~~~~~~~~~sk~~~--~--~-~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~--~sls~~L~ 326 (491)
T KOG1276|consen 254 ALRKSLGEREVSISLGLKLSGNSKSRS--G--N-WSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQ--NSLSNALS 326 (491)
T ss_pred HHHHHhcccchhhhccccccccccccc--C--C-ceeEeEcCCCceeeeccccccccchHHhhhhccccc--hhhhhhhh
Confidence 999999999999999999999987653 3 1 445554222223445666667999999999998642 23445567
Q ss_pred cCCCCcEEEEEEEecCc
Q 026733 132 ALVGVPVVTVQLRYNGW 148 (234)
Q Consensus 132 ~l~~~~~~~v~l~~d~~ 148 (234)
.+.+.++..|++.|.++
T Consensus 327 ei~y~~V~vVn~~yp~~ 343 (491)
T KOG1276|consen 327 EIPYVPVAVVNTYYPKE 343 (491)
T ss_pred cCCCCceEEEEEeccCc
Confidence 88888999999999763
No 35
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.48 E-value=0.00034 Score=60.67 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+.+.|.+.+++.|++|+.+++|++|..++ + ++++|.+ .+|+ +.||.||.|+.+.+
T Consensus 148 ~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~--~v~gv~~---~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 148 RLIQALAAEAQRAGVEIRTGTEVTSIDVDG---G--RVTGVRT---SDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHTT-EEEESEEEEEEEEET---T--EEEEEEE---TTEE-EEECEEEE--GGGH
T ss_pred chhhhhHHHHHHhhhhccccccccchhhcc---c--ccccccc---cccc-cccceeEecccccc
Confidence 689999999999999999999999999997 4 7888988 3666 99999999988764
No 36
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.33 E-value=0.011 Score=55.01 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChhh--HhhhC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG--IKRLL 117 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~~--~~~Ll 117 (234)
.+...+++..+++|++|+.+++|++|..++ + ++++|++.+..+| ..+.|+.||.|+.+++ +.+++
T Consensus 129 ~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~---~--~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 197 (516)
T TIGR03377 129 RLVAANVLDAQEHGARIFTYTKVTGLIREG---G--RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYA 197 (516)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEEC---C--EEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhc
Confidence 677888999999999999999999999876 4 7888887532234 4689999999988753 44444
No 37
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.27 E-value=0.0008 Score=60.59 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=49.9
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+++.+.+.|+++|++|+++++|+.|.+++ + .+.+|.+ .+|+++.+|+||+|....
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~---~--~~~~v~~---~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIED---N--EVLGVKL---TKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecC---C--ceEEEEc---cCCcEEecCEEEEccCcc
Confidence 578999999999999999999999999997 3 5778877 489999999999998864
No 38
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.20 E-value=0.00047 Score=58.31 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=66.6
Q ss_pred hHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCCcc--cCchHH
Q 026733 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSW--REMKFF 127 (234)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~~~--~~~~~~ 127 (234)
..++++.| ..--+|.++++|++|...+ +.+.+.+. ++++...+|.||+++|.+....||.... ......
T Consensus 107 msalak~L-AtdL~V~~~~rVt~v~~~~------~~W~l~~~--~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~ 177 (331)
T COG3380 107 MSALAKFL-ATDLTVVLETRVTEVARTD------NDWTLHTD--DGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALR 177 (331)
T ss_pred hHHHHHHH-hccchhhhhhhhhhheecC------CeeEEEec--CCCcccccceEEEecCCCcchhhcCcccccchHHHH
Confidence 34566643 3567899999999999985 35777663 3445677999999999877766774321 222355
Q ss_pred HHhhcCCCCcEEEEEEEecCccc
Q 026733 128 NNIYALVGVPVVTVQLRYNGWVT 150 (234)
Q Consensus 128 ~~~~~l~~~~~~~v~l~~d~~~~ 150 (234)
..+....+.|++++.|.|..++.
T Consensus 178 ~~~a~V~y~Pc~s~~lg~~q~l~ 200 (331)
T COG3380 178 AALADVVYAPCWSAVLGYPQPLD 200 (331)
T ss_pred HhhccceehhHHHHHhcCCccCC
Confidence 56778888899999999998765
No 39
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.14 E-value=0.0012 Score=59.68 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=45.1
Q ss_pred eecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
-||...-+..+.+.|.+.+++.|++|+++++|++|..++ + ++..|++ .+++.+.||.||+|+.-
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~---~--~~f~v~~---~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE---D--GVFGVKT---KNGGEYEADAVILATGG 164 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET---T--EEEEEEE---TTTEEEEESEEEE----
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC---C--ceeEeec---cCcccccCCEEEEecCC
Confidence 345443445789999999999999999999999999987 3 5778876 37889999999999764
No 40
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.08 E-value=0.0021 Score=55.71 Aligned_cols=57 Identities=19% Similarity=0.062 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhH
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGI 113 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~ 113 (234)
.+...+.+.++++|++|+.+++|++|..++ + ++++|.+ .+| .+.||.||.++...+-
T Consensus 138 ~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~---~--~~~~v~~---~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 138 ALLKALEKALEKLGVEIIEHTEVQHIEIRG---E--KVTAIVT---PSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHHHHcCCEEEccceEEEEEeeC---C--EEEEEEc---CCC-EEECCEEEEcCChhhh
Confidence 688999999999999999999999999876 4 6778765 245 7899999999997653
No 41
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.00 E-value=0.0019 Score=57.33 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=49.4
Q ss_pred ecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCC
Q 026733 40 MLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (234)
Q Consensus 40 ~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~ 109 (234)
||...-++.|++.|.+.+++.||+|+++++|.+|..++ ....+.+ .+|+++.+|.+|+|+.
T Consensus 104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~------~~f~l~t---~~g~~i~~d~lilAtG 164 (408)
T COG2081 104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD------SGFRLDT---SSGETVKCDSLILATG 164 (408)
T ss_pred cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC------ceEEEEc---CCCCEEEccEEEEecC
Confidence 34434445799999999999999999999999999986 2345655 4777899999999976
No 42
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.87 E-value=0.0094 Score=54.26 Aligned_cols=81 Identities=21% Similarity=0.198 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHh---cCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecC
Q 026733 18 SARCMLTIFALFA---TKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT 94 (234)
Q Consensus 18 SA~~~~~~l~~~~---~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~ 94 (234)
+|...+..+++++ ++-+.+.+.||.-|.+ .|.+++.|.-.=.||...+|++|++|.++++ | ++.+|..
T Consensus 201 p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~G-ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~--g--~~~gV~s---- 271 (438)
T PF00996_consen 201 PAREGLERIKLYLSSLGRYGKSPFLYPLYGLG-ELPQAFCRLSAVYGGTYMLNRPIDEIVVDED--G--KVIGVKS---- 271 (438)
T ss_dssp BSHHHHHHHHHHHHHHCCCSSSSEEEETT-TT-HHHHHHHHHHHHTT-EEESS--EEEEEEETT--T--EEEEEEE----
T ss_pred cHHHHHHHHHHHHHHHhccCCCCEEEEccCCc-cHHHHHHHHhhhcCcEEEeCCccceeeeecC--C--eEEEEec----
Confidence 5666777777653 2233458999988988 5999999999999999999999999999763 6 8888865
Q ss_pred CCeEEecCEEEEc
Q 026733 95 DKKVVQADAYVAA 107 (234)
Q Consensus 95 ~g~~~~aD~VV~a 107 (234)
+|+++.++.||..
T Consensus 272 ~ge~v~~k~vI~d 284 (438)
T PF00996_consen 272 EGEVVKAKKVIGD 284 (438)
T ss_dssp TTEEEEESEEEEE
T ss_pred CCEEEEcCEEEEC
Confidence 8999999999975
No 43
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.80 E-value=0.0038 Score=56.45 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=52.0
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChhhHhhhCC
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPGIKRLLP 118 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~~~~~Ll~ 118 (234)
..+.+.|.+.++++||+|+.+++|.++..++ + ++++|... ++ ..+.||.||+|+.......|+.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~---~--~v~~V~t~---~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG---N--RVTRIHTR---NHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC---C--eEEEEEec---CCccceEECCEEEEccCCCcCHHHHh
Confidence 4678999999999999999999999999887 4 78887653 44 4789999999988774454544
No 44
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.74 E-value=0.0067 Score=54.56 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCC
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~ 109 (234)
..+.+.|.+.++++|++|+++++|++|..++ + +|+||......+|+ .+.|++||+|+.
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~---g--~V~Gv~~~~~~~g~~~~i~A~aVIlAtG 200 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITED---G--RVTGVVAENPADGEFVRIKAKAVILATG 200 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET---T--EEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeC---C--ceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence 3588999999999999999999999999986 6 89999886334565 567999999977
No 45
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.68 E-value=0.007 Score=54.35 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+...|.+.++++|++|+++++|++|..++ + ++++|.+ ++..+.+|.||.++...+
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~v~t----~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEG---G--RITGVQT----GGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--EEEEEEe----CCcEEeCCEEEECCCcch
Confidence 567889999999999999999999998876 4 5667765 455789999999988753
No 46
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.61 E-value=0.0079 Score=54.53 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeE-EecCEEEEcCChhh--HhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV-VQADAYVAACDVPG--IKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~-~~aD~VV~a~~~~~--~~~Ll~ 118 (234)
.+...|++.++++|++|++|++|+.|+.+++ | ++-+.+ .+|++ ++|+.||.+++..+ +.++..
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d--g---~~~~~~---~~g~~~~~ak~Vin~AGl~Ad~la~~~g 219 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSD--G---VFVLNT---SNGEETLEAKFVINAAGLYADPLAQMAG 219 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCC--c---eEEEEe---cCCcEEEEeeEEEECCchhHHHHHHHhC
Confidence 4688999999999999999999999999873 3 344444 46665 99999999999764 555543
No 47
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.45 E-value=0.012 Score=55.53 Aligned_cols=57 Identities=23% Similarity=0.201 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe-EEec-CEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQA-DAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~-~~~a-D~VV~a~~~ 110 (234)
.++..|.+.++++|++|+++++|++|..++ | +++||.... .++. .+.+ +.||+++..
T Consensus 218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~---g--~v~GV~~~~-~~~~~~i~a~k~VVlAtGg 276 (581)
T PRK06134 218 ALVARLLKSAEDLGVRIWESAPARELLRED---G--RVAGAVVET-PGGLQEIRARKGVVLAAGG 276 (581)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---C--EEEEEEEEE-CCcEEEEEeCCEEEEcCCC
Confidence 578999999999999999999999999875 5 899987753 2333 5778 999999774
No 48
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.40 E-value=0.017 Score=54.17 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChhh--HhhhC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG--IKRLL 117 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~~--~~~Ll 117 (234)
.+..++++..+++|++|+++++|++|..++ + ++++|++.+..+| ..+.||.||.|+.+++ +.++.
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~---~--~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~ 218 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIREG---D--TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYA 218 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEcC---C--eEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhc
Confidence 567778888899999999999999999876 4 7889887532233 4789999999988753 44443
No 49
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.27 E-value=0.018 Score=52.24 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~ 109 (234)
.+.+.|.+.+++.|++|+++++|++|..+.+ ++ ++++|... .++..+.++.||+++.
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~-~g--~v~gv~~~--~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAF-DG--AHDGPLTT--VGTHRITTQALVLAAG 180 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCC-CC--eEEEEEEc--CCcEEEEcCEEEEcCC
Confidence 5789999999999999999999999988621 15 78888753 2446889999999987
No 50
>PRK07121 hypothetical protein; Validated
Probab=96.27 E-value=0.018 Score=53.20 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEec-CEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQA-DAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~a-D~VV~a~~~ 110 (234)
.+.+.|.+.+++.|++|+++++|++|..+++ | +++||+....++...+.| +.||+|+.-
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~--g--~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDD--G--RVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCC--C--CEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 5788999999999999999999999998753 5 899998753111235778 999999773
No 51
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.21 E-value=0.015 Score=51.93 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=47.8
Q ss_pred eecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
-||...-+..+.+.|.+.+++.|++|+++++|++| ++ + + ..|.+. .+++.+.||.||.|+.-.
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~---~--~-~~v~~~--~~~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG---G--T-LRFETP--DGQSTIEADAVVLALGGA 140 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC---C--c-EEEEEC--CCceEEecCEEEEcCCCc
Confidence 45544455689999999999999999999999999 33 2 2 456552 234568999999998753
No 52
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.14 E-value=0.024 Score=51.95 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-cCCCeEEecCEEEEcCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-ATDKKVVQADAYVAACD 109 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-~~~g~~~~aD~VV~a~~ 109 (234)
.+...|.+.+++.|++|+++++|++|..++ + ++++|.... .++...+.++.||+|+.
T Consensus 132 ~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~---g--~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 132 ALVNALYRSAERLGVEIRYDAPVTALELDD---G--RFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--eEEEEEEEccCCceEEEECCEEEECCC
Confidence 578899999999999999999999999865 5 899987631 11234678999999976
No 53
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.10 E-value=0.021 Score=53.72 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=46.3
Q ss_pred cccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecC-EEEEcCC
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQAD-AYVAACD 109 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD-~VV~a~~ 109 (234)
+..|...|.+.+++.|++|+++++|++|..++ | +|+||.... +|+ .+.|+ .||+|+.
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~---g--~v~Gv~~~~--~g~~~~i~A~~aVIlAtG 266 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVED---G--RVVGVVVVR--DGREVLIRARRGVLLASG 266 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--EEEEEEEEE--CCeEEEEEecceEEEecC
Confidence 34688999999999999999999999999875 5 899998753 443 46784 7888866
No 54
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.10 E-value=0.022 Score=53.89 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecC-EEEEcCC
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQAD-AYVAACD 109 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD-~VV~a~~ 109 (234)
..+...|.+.+++.|++|+++++|++|..+++ | +|+||.... +|+ .+.|. .||+|+.
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~--g--~V~Gv~~~~--~~~~~~i~a~~aVilAtG 272 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPD--G--AVVGAVVER--EGRTLRIGARRGVILATG 272 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCC--C--cEEEEEEEe--CCcEEEEEeceeEEEecC
Confidence 35788899999999999999999999999753 6 899998753 443 46787 6888865
No 55
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.08 E-value=0.024 Score=53.59 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEec-CEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQA-DAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~a-D~VV~a~~~ 110 (234)
..+.+.|.+.++++|++|+++++|.+|..++ + +++||... .+|+ .+.+ +.||+|+.-
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~---g--~V~GV~~~--~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH---G--RVIGATVV--QGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC---C--EEEEEEEe--cCCeEEEEEccceEEECCCC
Confidence 3688999999999999999999999998865 5 89999875 2443 4665 689998763
No 56
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.02 E-value=0.027 Score=53.14 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe-EEecC-EEEEcCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQAD-AYVAACD 109 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~-~~~aD-~VV~a~~ 109 (234)
.+.+.|.+.+++.|++|+++++|++|..++ + +++||.+.. .+++ .+.++ .||+|+.
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~---g--~V~GV~~~~-~~~~~~i~a~k~VVlAtG 272 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEG---G--RVVGARVID-AGGERRITARRGVVLACG 272 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeC---C--EEEEEEEEc-CCceEEEEeCCEEEEcCC
Confidence 588899999999999999999999999875 5 899998753 2333 46776 6888766
No 57
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.00 E-value=0.029 Score=50.91 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
.+.+.|.+.+++.|++|+++++|++|..+++ + ++++|++.. .+++ .+.++.||+++..
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~--g--~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ--G--TVVGVVVKG-KGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCC--C--cEEEEEEEe-CCCeEEEEecceEEEecCC
Confidence 5789999999999999999999999998653 5 789988753 2343 4679999999774
No 58
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.96 E-value=0.03 Score=52.77 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEec-CEEEEcCC
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQA-DAYVAACD 109 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~a-D~VV~a~~ 109 (234)
..|.++|.+.+++.|++|+++++|++|..++ | +|+||.... +|+ .+.+ ..||+|+.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~---g--~V~GV~~~~--~g~~~~i~a~kaVILAtG 275 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG---G--RVTGAVVDH--RGREVTVTARRGVVLAAG 275 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC---C--EEEEEEEEE--CCcEEEEEcCCEEEEecC
Confidence 3689999999999999999999999998764 6 899997642 342 3556 58988866
No 59
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.96 E-value=0.028 Score=52.89 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=45.4
Q ss_pred cccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecC-EEEEcCC
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQAD-AYVAACD 109 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD-~VV~a~~ 109 (234)
...+..+|.+.+++.|++|+++++|++|..++ + +|+||.... +| ..+.|+ .||+|+.
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~---g--~v~Gv~~~~--~g~~~~i~A~~~VIlAtG 266 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED---G--RVTGVHAAE--SGEPQLIRARRGVILASG 266 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC---C--EEEEEEEEe--CCcEEEEEeceeEEEccC
Confidence 34688899999999999999999999999875 5 899987742 33 347785 6888654
No 60
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.92 E-value=0.032 Score=51.83 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACD 109 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~ 109 (234)
.+++.|.+.+++.|++|+++++|++|..++ | ++++|.+... +| ..+.+|.||++..
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~---g--~V~Gv~~~~~-~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKD---G--KVTGVKVKIN-GKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecC---C--EEEEEEEEeC-CCeEEEEecCeEEEeCC
Confidence 478999999999999999999999998765 5 8999877532 32 3688999999976
No 61
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.89 E-value=0.032 Score=51.75 Aligned_cols=56 Identities=14% Similarity=-0.000 Sum_probs=45.5
Q ss_pred cchHHHHHHHHH----CC--cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITD----KG--GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~----~G--g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+...+++.+++ +| ++|+++++|+.|..++ + ..+.|.+ .+| .+.||.||.++..++
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~---~--~~~~V~T---~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSN---D--SLYKIHT---NRG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC---C--CeEEEEE---CCC-EEEeCEEEECcChhH
Confidence 578899999999 88 7899999999999875 2 4566765 245 689999999998765
No 62
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.85 E-value=0.05 Score=51.30 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=48.1
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..|...|.+.+++.|++|+.+++|++|..++ | ++.||...+..+|+ .+.|++||+|+.=
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~---g--~v~Ga~~~~~~~g~~~~i~AkaVILATGG 179 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMED---G--ECRGVIAYCLETGEIHRFRAKAVVLATGG 179 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeC---C--EEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence 4688999999999999999999999999874 6 89998764323454 5789999999773
No 63
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.75 E-value=0.047 Score=52.30 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=44.3
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
+.|.+.+++.|++|++++.|++|..++ | +++||...+..+|+ .+.|++||+|+.-
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~---g--~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD---G--RARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC---C--EEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 667778889999999999999999875 5 89999875322453 5789999999773
No 64
>PRK06847 hypothetical protein; Provisional
Probab=95.75 E-value=0.48 Score=41.74 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=48.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-Hhhh-CCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRL-LPS 119 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~L-l~~ 119 (234)
.+.+.|.+.+++.|++|+++++|++|..++ + . ..|.+ .+|+.+.+|.||.|..... .++. ++.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~-~~v~~---~~g~~~~ad~vI~AdG~~s~~r~~l~~~ 172 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD---D--G-VTVTF---SDGTTGRYDLVVGADGLYSKVRSLVFPD 172 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC---C--E-EEEEE---cCCCEEEcCEEEECcCCCcchhhHhcCC
Confidence 456788888888999999999999998765 2 3 34555 3788899999999988754 5544 353
No 65
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.74 E-value=0.064 Score=48.85 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..+.+.|.+.+++ .|++|+++++|++|..++ + ++.||.... +++ .+.|+.||+|+.-
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~---~--~v~Gv~~~~--~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEND---N--TCIGAICLK--DNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecC---C--EEEEEEEEE--CCcEEEEEcCeEEEccCc
Confidence 3578888888875 599999999999998765 5 788976542 333 5889999999774
No 66
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.73 E-value=0.13 Score=46.00 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=51.9
Q ss_pred cchHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++.+ ++++.+++|+.+..+++ .++ +.+. .+|++++||.||-+=..+ .+++.+.
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-----~v~-v~l~--~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGD-----GVT-VTLS--FDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-----ceE-EEEc--CCCcEEecCEEEECCCCchHHHHhcC
Confidence 56888999999888 79999999999999873 455 6663 288899999999997765 4777776
No 67
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.69 E-value=0.052 Score=51.86 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEecc-CCCCcceEEEEEEeecCCCe--EEecCEEEEcCChhh--HhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDK-AANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG--IKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~-~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~--~~~Ll~ 118 (234)
.+...+++..+++|++|+.+++|++|..++ + | ++++|.+.+..+|+ .+.+|.||.|+.+++ +.+++.
T Consensus 233 rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~--g--~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 233 RLNVALACTAALAGAAVLNYAEVVSLIKDEST--G--RIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred HHHHHHHHHHHhCCcEEEeccEEEEEEEecCC--C--cEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 678889999999999999999999998863 2 4 68888764322343 579999999999763 665553
No 68
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.64 E-value=0.052 Score=50.20 Aligned_cols=65 Identities=6% Similarity=0.107 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChhh--HhhhC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG--IKRLL 117 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~~--~~~Ll 117 (234)
.+..++.+.++++|++|+++++|++|..+++ + . +.|.+....+| ..+.||+||.+++.++ +.+.+
T Consensus 179 ~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~--~--~-v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~ 247 (483)
T TIGR01320 179 ALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD--G--S-WTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKS 247 (483)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--C--e-EEEEEeeccCCceEEEECCEEEECCCcchHHHHHHc
Confidence 6788999999999999999999999988652 3 2 33433211233 3689999999988653 44443
No 69
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.63 E-value=0.063 Score=50.99 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..+.+.|.+.+++.|++|+++++|++|..+++ | ++.||...+..+|+ .+.|++||+|+.-
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDG--G--VCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC--C--EEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 35788999999999999999999999998753 5 89998764323554 6789999999773
No 70
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.63 E-value=0.051 Score=48.95 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=47.1
Q ss_pred CCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 42 KGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 42 ~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
....+..+.+.+.+.+++.|++|+++++|++|..++ + ...|++ +++.+.+|.||.|+...
T Consensus 100 ~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~---~---~~~v~~----~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 100 CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD---N---GFGVET----SGGEYEADKVILATGGL 159 (400)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC---C---eEEEEE----CCcEEEcCEEEECCCCc
Confidence 333345789999999999999999999999997754 2 345554 56678999999998863
No 71
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.62 E-value=0.024 Score=50.49 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+...|.+.+++ |++|+.+++|.+|..++ + + +.|++ .+|+.+.||.||.++..++
T Consensus 136 ~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~---~--~-~~v~t---~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 136 QLCRALLAHAGI-RLTLHFNTEITSLERDG---E--G-WQLLD---ANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHhccCC-CcEEEeCCEEEEEEEcC---C--e-EEEEe---CCCCEEEcCEEEEcCCccc
Confidence 678889999998 99999999999999875 3 3 55665 3777789999999988764
No 72
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.59 E-value=0.031 Score=44.76 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=41.2
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
+.+.+-+.+..++.|.+|+++++|+++..+++ + +.|.+ .+++.+.||.||+|+..
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~---~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTT---RDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEE---TTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEE---EecceeeeeeEEEeeec
Confidence 35678899999999999999999999999973 3 77777 37778899999999885
No 73
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.55 E-value=0.06 Score=48.97 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=48.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChhhHhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPGIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~~~~~Ll~ 118 (234)
.+.+.|.+.+++.|++|+++++|.++..++ + ++..+... +| ..+.+|.||+|+....-..|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~---~--~V~~v~~~---~g~~~~i~AD~VVLAtGrf~s~GL~a 324 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG---G--RVTAVWTR---NHGDIPLRARHFVLATGSFFSGGLVA 324 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--EEEEEEee---CCceEEEECCEEEEeCCCcccCceec
Confidence 467889999999999999999999999876 4 56666532 44 4588999999988654444543
No 74
>PRK12839 hypothetical protein; Provisional
Probab=95.52 E-value=0.064 Score=50.67 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCC
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~ 109 (234)
..++..|.+..++.|++|+++++|++|..+++ | +|+||.... .+|+ ...++.||+|+.
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~--g--~V~GV~~~~-~~g~~~i~aak~VVLAtG 273 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN--G--RVTGVRVQG-PDGAVTVEATRGVVLATG 273 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC--C--cEEEEEEEe-CCCcEEEEeCCEEEEcCC
Confidence 36788999999999999999999999988642 6 899998653 2443 334589999876
No 75
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.48 E-value=0.033 Score=50.15 Aligned_cols=59 Identities=25% Similarity=0.207 Sum_probs=47.3
Q ss_pred CcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe-EEecCEEEEcCChh---hHhhh
Q 026733 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQADAYVAACDVP---GIKRL 116 (234)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~-~~~aD~VV~a~~~~---~~~~L 116 (234)
+++.+.+...+.|+++|++|++|++|++|.-+ +|.+. +|+ .+++|.+|-|+... .++.|
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----------~v~~~---~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD----------GVTLK---DGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC----------cEEEc---cCCeeEecCEEEEcCCCcCChhhhhc
Confidence 44578999999999999999999999999654 26663 666 59999999998864 34545
No 76
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=95.46 E-value=0.05 Score=46.48 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=43.1
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC---eEEecCEEEEcCChhhHhhh
Q 026733 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK---KVVQADAYVAACDVPGIKRL 116 (234)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g---~~~~aD~VV~a~~~~~~~~L 116 (234)
|...++..|.+|++++.|++|.++++ ++ ++++|++.....+ ..+.++.||+++..-...+|
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~-~~--~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L 262 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGD-GG--RATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL 262 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETT-ST--EEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH
T ss_pred cchhhccCCccEEcCcEEEEEeeecc-cc--ceeeeeeeecCCcceeeeccceeEEeccCCCCChhh
Confidence 34444444899999999999988632 25 8999998764444 45678999999986544443
No 77
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.40 E-value=0.082 Score=49.76 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
.+...|.+.+++.|++|+.+++|++|..++ | ++.||......+|+ .+.|+.||+|..-.
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDD---G--RVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeC---C--EEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 577889999999999999999999999875 5 89998764323554 57899999998853
No 78
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.37 E-value=0.061 Score=48.08 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh--HhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG--IKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~--~~~Ll~ 118 (234)
.+.+.|.+.+++.|++|+++++|.+|..++ + + +.|.+ .+| .+.+|.||.+..... +.+++.
T Consensus 150 ~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~---~--~-~~V~~---~~g-~i~ad~vV~A~G~~s~~l~~~~g 212 (393)
T PRK11728 150 AVAEAMAELIQARGGEIRLGAEVTALDEHA---N--G-VVVRT---TQG-EYEARTLINCAGLMSDRLAKMAG 212 (393)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEecC---C--e-EEEEE---CCC-EEEeCEEEECCCcchHHHHHHhC
Confidence 678899999999999999999999998765 3 3 35655 244 789999999988753 444443
No 79
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.37 E-value=0.09 Score=49.67 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=48.4
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..|..+|.+.+++.|++|+.++.+++|..+++ | ++.||...+..+|+ .+.|++||+|+.-
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD--G--AVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCC--C--eEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 46788999999999999999999999998642 6 89998764323554 5779999999774
No 80
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.30 E-value=0.099 Score=49.75 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHC----CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCC
Q 026733 47 VYLSGPIRKYITDK----GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (234)
Q Consensus 47 ~~l~~~l~~~l~~~----Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~ 109 (234)
..+...|.+.+++. |++|+++++|++|..+++ | +++||...+..+|+ .+.|+.||+|+.
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~--g--rV~GV~~~~~~~g~~~~i~AkaVVLATG 193 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG--N--RARGIIARNLVTGEIETHSADAVILATG 193 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC--C--EEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 35666666666544 899999999999998653 6 89999875322443 578999999976
No 81
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.29 E-value=0.083 Score=47.34 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh--hHhhhC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP--GIKRLL 117 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~--~~~~Ll 117 (234)
.+...+++.++++|++++.+++|++|...++ + ++++|.+ .+| .+.+|.||.++... .+.+++
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~--~~~~v~t---~~g-~i~a~~vVvaagg~~~~l~~~~ 247 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDG--G--RVIGVET---TRG-FIGAKKVGVAVAGHSSVVAAMA 247 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--C--cEEEEEe---CCc-eEECCEEEECCChhhHHHHHHc
Confidence 4566788899999999999999999986532 4 6777766 255 68999887776654 344444
No 82
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.19 E-value=1 Score=41.82 Aligned_cols=58 Identities=17% Similarity=0.075 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~~ 112 (234)
.+...+++..+++|++|+.+++|++|..++ + .++|.+.+.. | ..+.||.||.|+.+.+
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~---~---~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARREG---G---LWRVETRDAD-GETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEEcC---C---EEEEEEEeCC-CCEEEEEecEEEECCCccH
Confidence 456677788899999999999999998875 3 4566654211 3 3588999999988753
No 83
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.15 E-value=0.1 Score=49.21 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
..+...|.+.+++.|++|+.++.+++|..++ | +++||...+..+|+ .+.|++||+|+.-.
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 197 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN---K--KVVGIVAMQMKTLTPFFFKTKAVVLATGGM 197 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC---C--EEEEEEEEECCCCeEEEEEeCeEEECCCcc
Confidence 3578899998888999999999999999875 6 89999765322443 57899999997743
No 84
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.10 E-value=0.091 Score=48.94 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecC-EEEEcCC
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQAD-AYVAACD 109 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD-~VV~a~~ 109 (234)
.+...+.+.+.++ |++|+++++|++|..++ | +|+||+... +| ..+.|+ .||+++.
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~---g--~v~Gv~~~~--~g~~~~i~A~k~VIlAtG 232 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVED---G--RVVGAVVER--GGERRRVRARRGVLLAAG 232 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecC---C--EEEEEEEEE--CCcEEEEEeCceEEEeCC
Confidence 4677777777665 99999999999999875 5 899998753 33 357786 6888766
No 85
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.04 E-value=0.14 Score=48.51 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..|...|.+..++.|++|+.++.|.++..+++ | ++.||......+|+ .+.|+.||+|+.-
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDAD--G--DVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC--C--eEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 35788898988999999999999999998642 6 89998764323454 5779999999774
No 86
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.02 E-value=0.049 Score=49.49 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCC
Q 026733 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (234)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~ 118 (234)
-+...+.+...++++++|+++++++.+.++.-..+ | +++.|.+ .+|..++||.||.-+...-..+++.
T Consensus 252 lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~--G--ev~~V~l---~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 252 LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD--G--EVSEVKL---KDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCC--C--cEEEEEe---ccCCEeccCeEEEeecccccccccc
Confidence 34456788999999999999999999999998874 7 8899988 4999999999999988654444444
No 87
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.00 E-value=0.096 Score=44.35 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec--------CCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------TDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~--------~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.|.+..++.|++|+++++|+++..+++ + ++.||.+... .+...+.|+.||.|....
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~--g--~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILRED--P--RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCC--C--cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 5778899999999999999999999998663 5 7888876310 123578999999998765
No 88
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=94.97 E-value=0.08 Score=48.51 Aligned_cols=53 Identities=19% Similarity=0.077 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.++..|++.++++|++|+.+++|++|.. + + .+.|++ .+| .+.||.||.|+...
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~---~---~~~v~t---~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-G---Q---PAVVRT---PDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-C---C---ceEEEe---CCc-EEECCEEEEccccc
Confidence 5789999999999999999999999974 2 2 244654 245 68999999998754
No 89
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.93 E-value=0.16 Score=48.03 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
..+.+.|.+.+++.|++|+.++.|.+|..++ | ++.|+......+|+ .+.|++||+|+.-.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILED---N--QAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC---C--EEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 3688899999999999999999999998875 5 88888643222454 57899999997753
No 90
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.92 E-value=0.12 Score=47.98 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~ 112 (234)
.+.+.|.+.+++.| ++|+++++|++|..+++ + + +.|.+.+..+|+ .+.||+||.+++..+
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d--g--~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD--G--S-WTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC--C--C-EEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 57889999999988 69999999999998653 3 3 334442112343 689999999988754
No 91
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.91 E-value=0.095 Score=35.76 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEe
Q 026733 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS 91 (234)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~ 91 (234)
.+++.+.+.+.+.++++|++|++|+.|++|..+++ .++ |.+.
T Consensus 37 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-----~~~-V~~~ 78 (80)
T PF00070_consen 37 GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-----GVE-VTLE 78 (80)
T ss_dssp TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----SEE-EEEE
T ss_pred hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-----EEE-EEEe
Confidence 34456788899999999999999999999998873 455 7774
No 92
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.89 E-value=0.098 Score=46.22 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.|.+.+++.|++++.+++|++|..++ + + +.|.+ .+| .+.+|.||.++...
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~---~--~-~~v~~---~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTE---L--L-VTVKT---TKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecC---C--e-EEEEe---CCC-EEEeCEEEEecCcc
Confidence 567888888999999999999999998875 3 3 34655 244 78999999988864
No 93
>PRK08275 putative oxidoreductase; Provisional
Probab=94.82 E-value=0.15 Score=48.05 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
.+.+.|.+.+++.|++|+.++.|++|..+++ | ++.||......+|+ .+.|+.||+|+.-.
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDAD--G--RVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCC--C--eEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 5788999999999999999999999998732 5 78998753223554 57899999997753
No 94
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.81 E-value=0.16 Score=48.17 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..|...|.+.+++.|++|++++.|++|..+++ | ++.||...+..+|+ .+.|++||+|+.-
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQD--G--AVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC--C--EEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 46788999988899999999999999998642 6 89998764223454 5779999999774
No 95
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.78 E-value=0.16 Score=48.40 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCC
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~ 109 (234)
..+...|.+.+++.|++|+.+++|+++..+++ | ++.||...+..+|+ .+.|++||+|+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED--G--ECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC--C--EEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 36788999999999999999999999998432 6 89998764323554 577999999975
No 96
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.74 E-value=0.14 Score=48.02 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..+.+.|.+.+++.|++|++++.|++|..+++ + +++||......+|+ .+.|+.||+|+.-
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~--~--~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN--R--EVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC--c--EEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 35788899999999999999999999998763 4 58988653212453 5789999999774
No 97
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.70 E-value=0.14 Score=45.95 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC---CeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD---KKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~---g~~~~aD~VV~a~~~~~ 112 (234)
.+...+.+.+++.|++|+.+++|++|..++ + .+ .+.+.+ ++ +..+.||.||.++...+
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~---~--~~-~v~~~~-~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDG---G--GV-VLTVQP-SAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---C--EE-EEEEEc-CCCCccceEecCEEEECCCcCh
Confidence 567888999999999999999999998765 3 33 343331 11 24689999999988764
No 98
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.68 E-value=0.099 Score=51.29 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+...+.+.+.++++|++|++++.|++|.-+ + ++.+|.+ .+|+.+++|.||.+++..
T Consensus 182 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~----~--~~~~v~~---~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 182 QTAGRLLQRELEQKGLTFLLEKDTVEIVGA----T--KADRIRF---KDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCceEEEEcC----C--ceEEEEE---CCCCEEEcCEEEECCCCC
Confidence 345667888999999999999999999654 3 5677877 488899999999998853
No 99
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.67 E-value=0.12 Score=46.94 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=44.4
Q ss_pred CcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+++.+.+.+.+.++++|++|+++++|++|.-+ + ++..+.. ++..+.+|.||.+++..
T Consensus 189 ~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~----~--~~~~v~~----~~~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 189 FDKEITDVMEEELRENGVELHLNEFVKSLIGE----D--KVEGVVT----DKGEYEADVVIVATGVK 245 (444)
T ss_pred cCHHHHHHHHHHHHHCCCEEEcCCEEEEEecC----C--cEEEEEe----CCCEEEcCEEEECcCCC
Confidence 34467788889999999999999999999543 3 4555654 55579999999998753
No 100
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.63 E-value=0.16 Score=45.22 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++.|++|+.+++|++|..++ + . +.|.+ ++|+.+.+|.||.+.... .+.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~-v~v~~---~~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD---E--G-VTVTL---SDGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---C--E-EEEEE---CCCCEEEeCEEEEcCCCChHHHHHcC
Confidence 467888888899999999999999998775 2 2 34555 378889999999998865 4666554
No 101
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.62 E-value=0.12 Score=51.07 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+...+.+.+.|+++|++|++++.|++|.-+++ + ....|.+ .+|+.+++|.||.+++..
T Consensus 187 ~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~--~--~~~~v~~---~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 187 QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV--E--ARKTMRF---ADGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCC--C--ceEEEEE---CCCCEEEcCEEEECCCcc
Confidence 34567789999999999999999999976532 2 3556766 488899999999998853
No 102
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.57 E-value=0.14 Score=45.46 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+.+.+.+.+++.|++++++++|++|..++ + ...|.+ .+|+.+.+|.||.+...
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~---~---~~~v~~---~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTD---S---GIRATL---DSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccC---C---EEEEEE---cCCcEEECCEEEECcCC
Confidence 456778899999999999999999998764 2 244666 48889999999999775
No 103
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.49 E-value=0.11 Score=47.22 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=42.9
Q ss_pred CcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
+++.+.+.+.+.|+++|++|+++++|++|.-+ .|.+ .+|+.+++|.||.+.+.
T Consensus 226 ~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----------~v~~---~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 226 FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----------EVVL---KDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----------EEEE---CCCCEEEccEEEEccCC
Confidence 34457888999999999999999999998532 2556 37889999999999764
No 104
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=94.46 E-value=0.15 Score=46.33 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=44.9
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-Hhh
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR 115 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~ 115 (234)
+-+.|.+..++.|++|+.+++|++|..++ + ++.++.. +|+.+.||.||.|..... +.+
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~---g--~v~~v~~----~g~~i~A~~VI~A~G~~s~l~~ 168 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD---G--KVVGVEA----DGDVIEAKTVILADGVNSILAE 168 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC---C--EEEEEEc----CCcEEECCEEEEEeCCCHHHHH
Confidence 34567888889999999999999998875 4 5656543 677899999999987653 443
No 105
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=94.40 E-value=0.23 Score=47.61 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..+.+.|.+.+++.|++|+.++.+.+|..+++ | ++.||...+..+|+ .+.|++||+|+.=
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD--G--ACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC--C--EEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 35788999989999999999999999998742 6 89998764323454 5789999999773
No 106
>PRK06116 glutathione reductase; Validated
Probab=94.36 E-value=0.15 Score=46.44 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=45.0
Q ss_pred cccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
...+.+.+.+.++++|++|+++++|++|..+++ + + ..|.+ .+|+.+++|.||.++..
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~--g--~-~~v~~---~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD--G--S-LTLTL---EDGETLTVDCLIWAIGR 263 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC--c--e-EEEEE---cCCcEEEeCEEEEeeCC
Confidence 335678899999999999999999999987642 3 2 33555 37788999999999764
No 107
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.32 E-value=0.18 Score=45.00 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++.|++++.+++|+++..++ + .+ .|.+ .+|+.+.+|.||.|.... .+.+.+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~---~--~v-~v~~---~~g~~~~a~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA---D--RV-RLRL---DDGRRLEAALAIAADGAASTLRELAG 176 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC---C--eE-EEEE---CCCCEEEeCEEEEecCCCchHHHhhc
Confidence 467788888999999999999999998876 2 33 3555 367789999999998875 4666553
No 108
>PRK10015 oxidoreductase; Provisional
Probab=94.28 E-value=0.22 Score=45.27 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=43.4
Q ss_pred hHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
-..|.+.+++.|++++.+++|+.|..++ + ++.++.. ++..+.||.||.|.....
T Consensus 111 d~~L~~~a~~~Gv~i~~~~~V~~i~~~~---~--~v~~v~~----~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 111 DPWLMEQAEQAGAQFIPGVRVDALVREG---N--KVTGVQA----GDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHcCCEEECCcEEEEEEEeC---C--EEEEEEe----CCeEEECCEEEEccCcch
Confidence 3457788889999999999999998775 4 6777654 566899999999988653
No 109
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.24 E-value=0.13 Score=47.82 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=45.2
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g-~~~~aD~VV~a~~~ 110 (234)
.+.+.|.+.+++. |++|+.+++|++|..++ | +++||.... .++ ..+.|+.||+|+.-
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~---g--~v~Gv~~~~-~~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDD---G--AVAGVLAAT-AGGPVVLPARAVVLATGG 195 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecC---C--EEEEEEEEe-CCeEEEEECCEEEEcCCC
Confidence 5788898888875 89999999999998765 5 899987642 122 25889999999774
No 110
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=94.20 E-value=0.27 Score=41.42 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++.|++++++++|+++..++ + ++ .+.+. ++++.+++|.||.+.... .+.+.++
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~---~--~~-~~~~~--~~~~~~~a~~vv~a~G~~s~~~~~~~ 155 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD---D--RV-VVIVR--GGEGTVTAKIVIGADGSRSIVAKKLG 155 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC---C--EE-EEEEc--CccEEEEeCEEEECCCcchHHHHhcC
Confidence 456788899999999999999999998876 3 33 34332 355689999999998875 3555543
No 111
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.20 E-value=0.22 Score=46.22 Aligned_cols=60 Identities=7% Similarity=-0.021 Sum_probs=43.0
Q ss_pred cchHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~ 112 (234)
.+.+.+.+.+++ .|++|+++++|+.|..+++ + . +.|.+....+|+ .+.||.||.++..++
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d--~--~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSD--G--G-WEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC--C--C-EEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 578889888865 5899999999999987732 3 2 334432112442 689999999988764
No 112
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=94.18 E-value=0.22 Score=47.91 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
.+...|.+.+++.|++|+.+++|.+|..++ | ++.||.+.+..+|+ .+.|+.||+|+.-
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~---g--~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDG---K--RCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEEC---C--EEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 456778888899999999999999999875 5 89998775323554 4679999999773
No 113
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.18 E-value=0.19 Score=45.01 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++.|++|+.+++|++|..+++ + +.|.+ .+|+.+.||.||.|-..+ .+++++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~----v~v~~---~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGD--D----WLLTL---ADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCC--e----EEEEE---CCCCEEEeCEEEEecCCCchhHHhcC
Confidence 3456788888889999999999999987752 2 34555 378889999999998875 4777664
No 114
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.17 E-value=0.22 Score=47.24 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=47.9
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccC-CCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKA-ANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~-~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
..+.+.|.+.+++.|++|+.++.|++|..+++ ++| ++.||......+|+ .+.|++||+|+.-.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGP--VAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCC--cEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 35788999999999999999999999998640 004 78998763223454 57899999997743
No 115
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=94.02 E-value=0.25 Score=45.97 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=44.6
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~~ 112 (234)
.+...+++..+++|++|+.+++|++|..++ + .++|.+.+..+| ..+.|+.||.|+.+.+
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~---~---~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARREN---G---LWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeC---C---EEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 456677888899999999999999998765 3 356665422234 3689999999988753
No 116
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.01 E-value=0.29 Score=44.79 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEecCEEEEcCChhhHh
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVPGIK 114 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~--~~~g~~~~aD~VV~a~~~~~~~ 114 (234)
.|...|.+.+++. |+++++|++|+.|...++ | -|.|.+.+ +++...+.|+.|+..+.-.++.
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d--g---~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD--G---RWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC--C---CEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 6788999999988 999999999999999874 5 36666542 2344678999999998876654
No 117
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.01 E-value=0.22 Score=45.99 Aligned_cols=59 Identities=17% Similarity=0.077 Sum_probs=46.4
Q ss_pred cchHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.|.+.+++ .|++|+.+++|++|..++ + ++.||..........+.++.||+|..-.
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~---g--~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIET---G--RVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccC---C--EEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 578889999988 699999999999998865 5 7888876521111467899999998754
No 118
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.99 E-value=0.19 Score=44.31 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+...+.+.+++.|++|+.+++|++|..++ + . +.|.+ .+| .+.+|.||.|+....
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~---~--~-~~v~~---~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADG---D--G-VTVTT---ADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeC---C--e-EEEEe---CCC-EEEeeEEEEecCcch
Confidence 466777888889999999999999999875 3 2 34554 245 789999999988753
No 119
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.85 E-value=0.25 Score=46.39 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee----cCCC-eEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----ATDK-KVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~----~~~g-~~~~aD~VV~a~~~~ 111 (234)
..+.+.|.+.+++.|++|+.++.|.+|..+++ | ++.||.+.. ..++ ..+.|+.||+|..-.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGT--G--AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC--C--eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 35788999999999999999999999998753 5 899987641 1233 468899999997753
No 120
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=93.85 E-value=0.25 Score=43.70 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=47.3
Q ss_pred cchHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026733 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~Ll~ 118 (234)
.+.+.|.+.+++ .|++++.+++|++|..++ + . +.|.+ .+|+.+.||.||.|..... +.+.+.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~---~--~-~~v~~---~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ---D--Y-VRVTL---DNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC---C--e-EEEEE---CCCCEEEeeEEEEecCCChHHHHHcC
Confidence 457778888887 499999999999998765 2 2 34555 3777899999999988764 666654
No 121
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.83 E-value=0.22 Score=46.07 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=45.7
Q ss_pred cccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
...+.+.+.+.|+++|+++++++.|++|..+++ + ...|.+ .+|+.+++|.||.++..
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~--~---~~~v~~---~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNAD--G---SKHVTF---ESGKTLDVDVVMMAIGR 286 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC--c---eEEEEE---cCCCEEEcCEEEEeeCC
Confidence 446788999999999999999999999987642 3 345655 36778999999998774
No 122
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.81 E-value=0.29 Score=41.33 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=50.2
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec--------CCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------TDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~--------~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+..++.|++|+.++.|+++..+++ .. ++.||.+... .+...+.|+.||.|.+.. .+.+++.
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~-~~--~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~ 177 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDD-TV--GVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCA 177 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCC-CC--ceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHH
Confidence 5778888999999999999999999998763 12 5888876310 023478999999998865 3444443
No 123
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.79 E-value=0.25 Score=45.41 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
..+.+.|.+.+++.|++++.+ .|+.|..++ + ++.+|.. +|+.+.++.||+|+.-.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~---g--~v~Gv~~----~g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN---G--KAYGVFL----DGELLKFDATVIATGGF 174 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC---C--EEEEEEE----CCEEEEeCeEEECCCcC
Confidence 368899999999999999876 899988764 5 7888876 67789999999998753
No 124
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=93.76 E-value=0.32 Score=46.35 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
.+...|.+.++++| ++|+.+++|.+|..++ + +++||...+..+|+ .+.|+.||+|+.-
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDD---N--RIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC---C--EEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 46677888888876 9999999999998875 5 78888643212443 6889999999884
No 125
>PLN02507 glutathione reductase
Probab=93.75 E-value=0.24 Score=45.95 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=45.1
Q ss_pred CcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+...+.+.+.+.|+++|++|+++++|++|..++ + . ..|.+ .+|+.+++|.||.+++..
T Consensus 242 ~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~---~--~-~~v~~---~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 242 FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE---G--G-IKVIT---DHGEEFVADVVLFATGRA 299 (499)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--e-EEEEE---CCCcEEEcCEEEEeecCC
Confidence 344567788889999999999999999998654 2 2 23444 377889999999998753
No 126
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.65 E-value=0.24 Score=45.27 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
...+.+.+.+.++++|++++++++|++|..++ + . ..+.+ .+|+.+++|.||.+....
T Consensus 215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~---~--~-~~v~~---~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD---D--G-VIVHL---KSGKKIKADCLLYANGRT 271 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC---C--e-EEEEE---CCCCEEEeCEEEEeecCC
Confidence 34577899999999999999999999998754 2 2 23444 367789999999998754
No 127
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.63 E-value=0.26 Score=44.27 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+...+.+.|++.. .+| ...+|++|..++ + +|+||.+ .+|+.+.+|.||.|..+
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~---~--~v~GV~~---~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIVEN---G--KVKGVVT---KDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEECT---T--EEEEEEE---TTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEecC---C--eEEEEEe---CCCCEEecCEEEEeccc
Confidence 45677888888855 566 578999999997 5 8999998 49999999999999887
No 128
>PRK06184 hypothetical protein; Provisional
Probab=93.60 E-value=0.4 Score=44.42 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=47.5
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~Ll~ 118 (234)
+-+.|.+.+++.|++|+++++|++|..+++ + ++ +.+...++++.+.||+||.+-...+ +++.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~---v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDAD--G---VT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--c---EE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 445788888889999999999999988763 3 33 3332223667899999999988764 666664
No 129
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=93.60 E-value=0.3 Score=45.87 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=41.7
Q ss_pred cchHHHHHHHHH---C-CcEEEcCceeeEEEeccCCCCcceEEEEEEee-cC-------------CC-eEEecCEEEEcC
Q 026733 48 YLSGPIRKYITD---K-GGRFHLRWGCREILYDKAANAETYVKGLAMSK-AT-------------DK-KVVQADAYVAAC 108 (234)
Q Consensus 48 ~l~~~l~~~l~~---~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-~~-------------~g-~~~~aD~VV~a~ 108 (234)
.++++|.+.+++ . |++|++++++++|..++ | +|+||.... .. ++ ..+.|+.||+|+
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~---g--~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILAT 223 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTD---G--AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTS 223 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC---C--EEEEEEEEecccccccccccccccccceEEEecCEEEEeC
Confidence 467788777652 3 59999999999999875 6 899998521 01 12 367899999996
Q ss_pred C
Q 026733 109 D 109 (234)
Q Consensus 109 ~ 109 (234)
.
T Consensus 224 G 224 (549)
T PRK12834 224 G 224 (549)
T ss_pred C
Confidence 6
No 130
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=93.59 E-value=0.28 Score=43.19 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++.| ++|+.+++|++|..++ + .+ .|.+ .+|+.+.+|.||.+-... .+++.+.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~---~--~~-~v~~---~~g~~~~~~~vi~adG~~S~vr~~l~ 170 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS---D--HV-ELTL---DDGQQLRARLLVGADGANSKVRQLAG 170 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC---C--ee-EEEE---CCCCEEEeeEEEEeCCCCCHHHHHcC
Confidence 46778888888888 9999999999998876 3 33 4555 478889999999987765 4665553
No 131
>PRK06834 hypothetical protein; Provisional
Probab=93.58 E-value=0.27 Score=45.56 Aligned_cols=62 Identities=8% Similarity=0.103 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+-+.|.+.+++.|++|+.+++|++|..+++ + +.|++ .+|+.+.+|+||.+...+ .+++++.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~--~----v~v~~---~~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDT--G----VDVEL---SDGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--e----EEEEE---CCCCEEEeCEEEEecCCCCCcHhhcC
Confidence 3456777888899999999999999998763 2 33554 367789999999998765 4666654
No 132
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.56 E-value=0.27 Score=46.28 Aligned_cols=59 Identities=7% Similarity=0.056 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..+.+.|.+.++++ |++|++++.|++|..+++ +| ++.||.... +|+ .+.|+.||+|+.-
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~-~g--~v~Gv~~~~--~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPE-TG--RCQGISLLY--QGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCC-CC--EEEEEEEEE--CCeEEEEEcCEEEEcCCC
Confidence 46888999988765 999999999999998741 15 899987652 454 4789999999774
No 133
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.55 E-value=0.67 Score=41.12 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++.|+..+++++|+++..+++ .+ .|.+ ++|+.+.+|.||.|-... .+++.+.
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-----~~-~v~~---~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPRED-----EV-TVTL---ADGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCC-----eE-EEEE---CCCCEEEEeEEEEecCCCchhHHhcC
Confidence 4577888888888766699999999988762 33 3555 377889999999998865 4666554
No 134
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.51 E-value=0.29 Score=44.80 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC---eEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK---KVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g---~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.++++|++++++++|++|..++ + . ..+.+. +| +.+++|.||.++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~---~--~-v~v~~~---~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD---D--G-VTVTLE---DGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC---C--E-EEEEEE---eCCeeEEEEeCEEEEeeCCc
Confidence 3567888999999999999999999998664 2 2 234443 34 678999999997754
No 135
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=93.50 E-value=0.3 Score=43.79 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.++++|++|+++++|++|.- + + . ..|.+ .+|+.+.+|.||.++...
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~---~--~-~~v~l---~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G---E--K-VELTL---QSGETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C---C--E-EEEEE---CCCCEEECCEEEECCCCC
Confidence 4556688888999999999999999965 3 2 2 34556 478889999999998753
No 136
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.47 E-value=0.33 Score=44.32 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.++++|++++++++|++|..++ + ++. +... +| +.+.+|.||.++...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~---~--~v~-v~~~---~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND---D--QVV-YENK---GGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC---C--EEE-EEEe---CCcEEEEEeCEEEEecCCc
Confidence 3567888999999999999999999998765 3 333 4442 45 578999999998753
No 137
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.47 E-value=0.18 Score=48.40 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+.+.|.+.+++ |++|+.+++|++|..++ + ++. |.+ .+|..+.+|.||.+....+
T Consensus 409 ~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~---~--~~~-v~t---~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 409 ELCRALLALAGQ-QLTIHFGHEVARLERED---D--GWQ-LDF---AGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHhccc-CcEEEeCCEeeEEEEeC---C--EEE-EEE---CCCcEEECCEEEECCCCCc
Confidence 678899999998 99999999999998876 3 333 655 3666778999999988754
No 138
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.46 E-value=0.33 Score=44.43 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.+++.|++++++++|++|..++ + ...+.+...++++.+++|.||.++...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~---~---~~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG---G---GKIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC---C---EEEEEEEeCCCceEEEeCEEEEeECCC
Confidence 3567888899999999999999999998764 2 233444321234679999999998753
No 139
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.36 E-value=0.34 Score=44.33 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=45.3
Q ss_pred CcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEecCEEEEcCChh
Q 026733 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVP 111 (234)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g-~~~~aD~VV~a~~~~ 111 (234)
+++.+.+.+.+.|+++|++++++++|++|..+++ + ...|.+ ++| +.+++|.||.++...
T Consensus 205 ~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~--~---~~~v~~---~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 205 FDSMISETITEEYEKEGINVHKLSKPVKVEKTVE--G---KLVIHF---EDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC--c---eEEEEE---CCCcEEEEcCEEEEeeCCC
Confidence 3445778899999999999999999999986542 2 234555 256 578999999998854
No 140
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.28 E-value=0.27 Score=45.89 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChhh--HhhhCCCcccC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG--IKRLLPSSWRE 123 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~--~~~Ll~~~~~~ 123 (234)
.|.-..++...++|+++++.++|+++..++ | ++||++.+..+|+ .+.|+.||-|+.+++ +.+........
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~---~---v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~ 238 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG---G---VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSP 238 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC---C---EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCC
Confidence 466677888899999999999999999996 3 8999987544454 577999999988764 55554321110
Q ss_pred chHHHHhhcCCCCcEEEEEEEecC
Q 026733 124 MKFFNNIYALVGVPVVTVQLRYNG 147 (234)
Q Consensus 124 ~~~~~~~~~l~~~~~~~v~l~~d~ 147 (234)
. ..+ .++--+|+.+++
T Consensus 239 ~------~~v--r~skGsHlVv~~ 254 (532)
T COG0578 239 H------IGV--RPSKGSHLVVDK 254 (532)
T ss_pred C------ccc--eeccceEEEecc
Confidence 0 011 155566777877
No 141
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.21 E-value=0.43 Score=45.66 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHC--------C-----cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDK--------G-----GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~--------G-----g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..+.++|.+.+++. | ++|+.+++|.+|..++ | ++.||......+|+ .+.|++||+|+.-
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG---G--RIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC---C--EEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 35788898888877 7 9999999999999865 5 88888653223454 5789999999874
No 142
>PRK06370 mercuric reductase; Validated
Probab=93.16 E-value=0.45 Score=43.59 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.++++|++|+++++|++|..+++ + ..|.+...++++.+++|.||.++...
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~----~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGD--G----IAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--E----EEEEEEeCCCceEEEeCEEEECcCCC
Confidence 4677889999999999999999999987642 2 23333221245679999999998753
No 143
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.98 E-value=0.47 Score=44.86 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=45.9
Q ss_pred cchHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
.+.+.|.+.+++ .|++|+.++.|.+|..++ | ++.||...+..+|+ .+.|+.||+|+.-.
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVEN---G--VFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEEC---C--EEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 477888888876 689999999999999875 5 88898654323554 57899999997743
No 144
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=92.94 E-value=0.24 Score=38.47 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=53.2
Q ss_pred HcCCCCcccccHHHH---HHHHHHHhcCCc----c-ceeee-cCCCCcccchHHHHHHHH--HCCcEEE-cCceeeEEEe
Q 026733 8 ALGFIDCDNISARCM---LTIFALFATKTE----A-SLLRM-LKGSPDVYLSGPIRKYIT--DKGGRFH-LRWGCREILY 75 (234)
Q Consensus 8 ~~~~~~~~~~SA~~~---~~~l~~~~~~~~----~-~~~g~-~~g~~~~~l~~~l~~~l~--~~Gg~i~-~~~~V~~i~~ 75 (234)
.++|.+++.+|...- -.....+-.+.. . ..-.| +|.-+++.|.+.+.+.++ ..|++|. ...+|+.|..
T Consensus 50 ~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~ 129 (156)
T PF13454_consen 50 HLLNTPADQMSLFPDDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRR 129 (156)
T ss_pred HhhcccccccccccccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEE
Confidence 467888888877542 122222222221 0 01111 333344444444444444 3465543 6789999999
Q ss_pred ccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 76 DKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.++ + ..|.+ .+|..+.+|+||+++..
T Consensus 130 ~~~--~----~~v~~---~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 130 DDD--G----YRVVT---ADGQSIRADAVVLATGH 155 (156)
T ss_pred cCC--c----EEEEE---CCCCEEEeCEEEECCCC
Confidence 873 3 45655 48889999999999864
No 145
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.92 E-value=0.32 Score=43.94 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.++++|++++++++|++|.-++ ++ +.+ .+|+.+.+|.||.+++..
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~------~~--v~~---~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGEE------RV--KVF---TSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC------CE--EEE---cCCCEEEeCEEEECCCcc
Confidence 3467778889999999999999999996542 32 344 378889999999998753
No 146
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.89 E-value=0.35 Score=44.10 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=44.2
Q ss_pred cccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.+.++++|++++++++|++|..+++ + ..|.+ .+|+.+++|.||.+++..
T Consensus 206 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~----~~v~~---~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 206 DDDMRALLARNMEGRGIRIHPQTSLTSITKTDD--G----LKVTL---SHGEEIVADVVLFATGRS 262 (446)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--e----EEEEE---cCCcEeecCEEEEeeCCC
Confidence 345667888899999999999999999986542 2 33545 367789999999997753
No 147
>PRK06185 hypothetical protein; Provisional
Probab=92.87 E-value=0.66 Score=41.47 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g-~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++. |++++.+++|+++..++ + ++++|.+.. .+| ..+.+|.||.|-... .+++.+.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~---~--~v~~v~~~~-~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG---G--RVTGVRART-PDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC---C--EEEEEEEEc-CCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 3556777777664 89999999999999876 4 677776642 355 478999999998865 4666664
No 148
>PRK14694 putative mercuric reductase; Provisional
Probab=92.86 E-value=0.4 Score=44.03 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.++++|++|+++++|++|..++ + . ..+.. ++..+++|.||.++...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~---~--~-~~v~~----~~~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG---R--E-FILET----NAGTLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---C--E-EEEEE----CCCEEEeCEEEEccCCC
Confidence 3578889999999999999999999998664 2 2 23433 34469999999998753
No 149
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.74 E-value=0.5 Score=43.38 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~--~~~g~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.|+++|++|+++++|++|.-+++ + + .+.+.. +++++.+++|.||.++...
T Consensus 215 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~---v-~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 215 TETAKTLQKALTKQGMKFKLGSKVTGATAGAD--G---V-SLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCC--e---E-EEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 34678899999999999999999999976542 2 2 233321 1234678999999998754
No 150
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=92.72 E-value=0.77 Score=41.18 Aligned_cols=87 Identities=8% Similarity=0.019 Sum_probs=54.6
Q ss_pred CCCcccccHHHHHHHHHHHhcCC-c--cceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEE
Q 026733 11 FIDCDNISARCMLTIFALFATKT-E--ASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKG 87 (234)
Q Consensus 11 ~~~~~~~SA~~~~~~l~~~~~~~-~--~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~ 87 (234)
..+|+++||.|+..+=.++-... + ..-.|||++++. .+++.|. +..+.+|++|+.+..+..++ + .
T Consensus 160 g~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt-~~~~~ml---~~~~i~v~l~~~~~~~~~~~---~-----~ 227 (377)
T TIGR00031 160 GLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYT-KLFEKML---DHPLIDVKLNCHINLLKDKD---S-----Q 227 (377)
T ss_pred CCChHHCCHHHeEecceEecCCCCcccccccccccccHH-HHHHHHH---hcCCCEEEeCCccceeeccc---c-----c
Confidence 46789999998763222332111 1 113789988863 4655444 55788999999888887654 2 2
Q ss_pred EEEeecCCCeEEecCEEEEcCChhhHh
Q 026733 88 LAMSKATDKKVVQADAYVAACDVPGIK 114 (234)
Q Consensus 88 v~~~~~~~g~~~~aD~VV~a~~~~~~~ 114 (234)
+.+ +++.+. |.||+++|++.+-
T Consensus 228 ~~~----~~~~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 228 LHF----ANKAIR-KPVIYTGLIDQLF 249 (377)
T ss_pred eee----cccccc-CcEEEecCchHHH
Confidence 444 222333 8899999887644
No 151
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.68 E-value=0.41 Score=43.96 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.|+++|++|+++++|++|..++ + ++ .|.+ .+|+.+++|.||.++...
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~---~--~~-~v~~---~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTG---D--GV-VVTL---TDGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeC---C--EE-EEEE---CCCcEEEecEEEEeecCC
Confidence 467788899999999999999999997654 2 32 3555 377889999999997753
No 152
>PRK07045 putative monooxygenase; Reviewed
Probab=92.63 E-value=0.57 Score=41.63 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=46.4
Q ss_pred chHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhh
Q 026733 49 LSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRL 116 (234)
Q Consensus 49 l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~L 116 (234)
+.+.|.+.+.+ .|++++++++|+.|..+++ + .++.|.+ ++|+++.+|.||.+-... .+++.
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~--~~~~v~~---~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDAD--G--TVTSVTL---SDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCC--C--cEEEEEe---CCCCEEECCEEEECCCCChHHHHH
Confidence 45666666654 5789999999999998763 4 4566776 478899999999998876 46664
No 153
>PRK07190 hypothetical protein; Provisional
Probab=92.61 E-value=0.53 Score=43.60 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=45.9
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
+-+.|.+.+++.|++|+.+++|++|..+++ + ++ +.+ .+|+.+.|++||.+-... .+++.+.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~---v~-v~~---~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQA--G---CL-TTL---SNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--e---eE-EEE---CCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 344566778889999999999999998763 3 32 334 367789999999998875 4666654
No 154
>PRK10262 thioredoxin reductase; Provisional
Probab=92.50 E-value=0.36 Score=41.79 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecC---CCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT---DKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~---~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.+++.|+++++++.|++|.-++ + ++.+|++.... +.+.+++|.||.++...
T Consensus 186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~---~--~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ---M--GVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HHHHHHHhhccCCCeEEEeCCEEEEEEcCC---c--cEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 356778888999999999999999997654 3 46677765211 22478999999997753
No 155
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.44 E-value=0.57 Score=39.62 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.+++.|+++++ ++|++|..++ + ...|.+ .+|+.+.+|.+|+|+...
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~---~---~~~v~~---~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLSD---R---PFKVKT---GDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEecC---C---eeEEEe---CCCCEEEeCEEEECCCCC
Confidence 5778899999999999999 8999998765 2 244555 367789999999998753
No 156
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=92.40 E-value=0.52 Score=43.26 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+.+-|.+..+++|++++.++ |+++..+++ | .|++|++ .+|++++||.||=+.....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~--g--~i~~v~~---~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDED--G--RITAVRL---DDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TT--S--EEEEEEE---TTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC--C--CEEEEEE---CCCCEEEEeEEEECCCccc
Confidence 457778888999999999885 888888764 6 8899988 4899999999999988754
No 157
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=92.34 E-value=0.55 Score=43.15 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.++++|++|+++++|++|..+.+ + ++..+... +| +.+++|.||.++...
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~--~--~~~~~~~~---~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD--G--GVLIVAEH---NGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC--C--CEEEEEEe---CCceEEEEeCEEEEeeCCc
Confidence 34678888999999999999999999986211 2 34334332 45 468999999998854
No 158
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.68 Score=41.53 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=62.8
Q ss_pred cccccHHHHHHHHHHHhcC---CccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEE
Q 026733 14 CDNISARCMLTIFALFATK---TEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAM 90 (234)
Q Consensus 14 ~~~~SA~~~~~~l~~~~~~---~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~ 90 (234)
.-+.++.-....+.++.++ -..++..||..+++ .|.+.+++.-.=.||+..+|.++.+|...++ | ++.+|..
T Consensus 197 ~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGlg-EL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~--g--k~igvk~ 271 (440)
T KOG1439|consen 197 YLDQPAKETLERILLYVRSFARYGKSPYLYPLYGLG-ELPQGFARLSAVYGGTYMLNKPIDEINETKN--G--KVIGVKS 271 (440)
T ss_pred hccCccHHHHHHHHHHHHHHhhcCCCcceecccCcc-hhhHHHHHHhhccCceeecCCceeeeeccCC--c--cEEEEec
Confidence 4455565544444443321 22345899999999 5999999999999999999999999999553 6 7888764
Q ss_pred eecCCCeEEecCEEEEcCC
Q 026733 91 SKATDKKVVQADAYVAACD 109 (234)
Q Consensus 91 ~~~~~g~~~~aD~VV~a~~ 109 (234)
++++..+-.+|+...
T Consensus 272 ----~~~v~~~k~vi~dpS 286 (440)
T KOG1439|consen 272 ----GGEVAKCKKVICDPS 286 (440)
T ss_pred ----CCceeecceEEecCc
Confidence 666666777777643
No 159
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.26 E-value=0.4 Score=42.22 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.++++|++++++++|++|. + + +|.+ ++|+.+++|.||.+++..
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~--~---~-----~v~~---~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP--D---G-----ALIL---ADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc--C---C-----eEEe---CCCCEEecCEEEEccCCC
Confidence 467788899999999999999999883 2 2 3556 378899999999998853
No 160
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=92.22 E-value=0.59 Score=41.52 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++. |++++.+++|+++..++ + . +.|.+ .+|+.+.||.||.|.... .+++.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~--~-~~v~~---~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDD---D--G-WELTL---ADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC---C--e-EEEEE---CCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 3456677777776 99999999999998775 2 2 44655 377789999999998875 4666654
No 161
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=92.19 E-value=0.52 Score=44.30 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=44.6
Q ss_pred chHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCCh-hhHhhhCC
Q 026733 49 LSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV-PGIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~-~~~~~Ll~ 118 (234)
+...+.+.+ +.| .+|++++.|.+|..+++ +.++|++|++.+..+| ..+.|+.||+|+.. .+.+-||.
T Consensus 216 ~~~~~~~~~-~~~n~~l~~~a~v~~i~~d~~--~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 216 FDLQPNDDA-PSERFTLLTNHRCTRLVRNET--NESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred hhhhhhhhc-cCCCEEEEcCCEEEEEEeCCC--CCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 334443333 455 89999999999999753 2117899887642123 35789999999885 55555544
No 162
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.16 E-value=2 Score=39.33 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=41.5
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cCCC-----------eEEecCEEEEcCCh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATDK-----------KVVQADAYVAACDV 110 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~------~~~g-----------~~~~aD~VV~a~~~ 110 (234)
....+.+++.|++|++++.+++|.-+++ | ++++|++.. ..+| +.+++|.||.++..
T Consensus 313 ~~~~~~l~~~GV~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 313 VEEIAHAEEEGVKFHFLCQPVEIIGDEE--G--NVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred HHHHHHHHhCCCEEEeccCcEEEEEcCC--C--eEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 4455778999999999999999976542 5 788887641 0122 36899999999875
No 163
>PRK08071 L-aspartate oxidase; Provisional
Probab=92.04 E-value=0.57 Score=43.65 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
.+.+.|.+.++ .|++|+.+++|.+|..++ + ++.||...+ .+|+ .+.|+.||+|+.-
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~---g--~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLIIEN---G--RCIGVLTKD-SEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheeecC---C--EEEEEEEEE-CCCcEEEEEcCeEEEecCC
Confidence 47788888776 699999999999998765 5 889987643 2343 5789999999764
No 164
>PRK09077 L-aspartate oxidase; Provisional
Probab=91.98 E-value=0.96 Score=42.40 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccC---CCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKA---ANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~---~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
.+...|.+.++++ |++|+.+++|.++..+++ +++ ++.||...+..+|+ .+.++.||+|+.-.
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g--~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGR--RVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCC--EEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 5677888888765 899999999999987530 014 89998865322444 57899999997743
No 165
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=91.98 E-value=0.28 Score=45.81 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=36.4
Q ss_pred HHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe---EEecCEEEEcCCh
Q 026733 58 TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK---VVQADAYVAACDV 110 (234)
Q Consensus 58 ~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~---~~~aD~VV~a~~~ 110 (234)
++.|.+|++++.|++|.+++ + +++||++.. +++ .+.++.||+++..
T Consensus 205 ~r~nl~i~~~~~V~rI~~~~---~--ra~GV~~~~--~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 205 KRPNLEVQTRAFVTKINFEG---N--RATGVEFKK--GGRKEHTEANKEVILSAGA 253 (532)
T ss_pred cCCCeEEEeCCEEEEEEecC---C--eEEEEEEEe--CCcEEEEEEeeeEEEccCC
Confidence 35579999999999999986 5 899998863 222 3579999999886
No 166
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.96 E-value=0.72 Score=42.28 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.|+++|++|+++++|++|.-++ + . ..+.+.. .+| +.+++|.||.++...
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~---~--~-~~v~~~~-~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNG---S--K-VTVTVSK-KDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeC---C--e-EEEEEEe-cCCCeEEEEeCEEEECcCcc
Confidence 567889999999999999999999997654 2 2 2344421 144 478999999998753
No 167
>PRK09897 hypothetical protein; Provisional
Probab=91.94 E-value=0.65 Score=43.57 Aligned_cols=55 Identities=13% Similarity=-0.113 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHCC--cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKG--GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~G--g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
...+.+.+.+++.| ++++.+++|+.|..++ + . +.|.+. .+|..+.+|.||+|+..
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---~--g-~~V~t~--~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITN---A--G-VMLATN--QDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---C--E-EEEEEC--CCCeEEEcCEEEECCCC
Confidence 34555666667787 7899999999998876 2 2 334442 24578899999999885
No 168
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.85 E-value=0.64 Score=43.03 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=44.1
Q ss_pred CcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+...+.+.+.+.|+++|++|++++.+++|...+ + . ..|++...++++.+++|.||.++...
T Consensus 218 ~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~---~--~-~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 218 FDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE---A--K-VKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred cCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC---C--e-EEEEEecCCcceEEEeCEEEEEecCC
Confidence 334577888999999999999999999997654 2 2 33555311113478999999998853
No 169
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.82 E-value=0.84 Score=43.34 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHCC----cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKG----GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~G----g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..|...|.+.+++.| ++|+.++.+.++..+++ | ++.||...+..+|+ .+.|++||+|+.=
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE--G--VCRGIVAQDLFTMEIESFPADAVIMATGG 198 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC--C--EEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 357788888777654 78999999999998642 6 89999875322344 5789999999774
No 170
>PRK06475 salicylate hydroxylase; Provisional
Probab=91.80 E-value=0.94 Score=40.54 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~Ll~ 118 (234)
.|.+.|.+.+.+. |++|+++++|+++..++ + . +.|.+.+.++++.+.+|.||-|-..++ +++.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~---~--~-v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTG---N--S-ITATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCC---C--c-eEEEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 3556677777654 78999999999998765 2 2 234443223556789999999988764 777764
No 171
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.77 E-value=0.63 Score=43.22 Aligned_cols=58 Identities=16% Similarity=0.021 Sum_probs=45.4
Q ss_pred CcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+.+.+.+.+.|+++|+++++++.|++|...+ + . ..|.+ .+|+.+.+|.||.++...
T Consensus 220 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~---~--~-~~v~~---~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 220 FDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD---D--K-IKVLF---SDGTTELFDTVLYATGRK 277 (499)
T ss_pred CCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC---C--e-EEEEE---CCCCEEEcCEEEEeeCCC
Confidence 333567889999999999999999999997654 2 2 34555 367888999999998864
No 172
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=91.66 E-value=0.19 Score=48.28 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=45.7
Q ss_pred hHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
-..|.+.++++|.++++++.+++|.-++ ++.+|++. +|..+.||.||.++.+
T Consensus 190 g~lL~~~le~~Gi~~~l~~~t~ei~g~~------~~~~vr~~---DG~~i~ad~VV~a~GI 241 (793)
T COG1251 190 GRLLRRKLEDLGIKVLLEKNTEEIVGED------KVEGVRFA---DGTEIPADLVVMAVGI 241 (793)
T ss_pred HHHHHHHHHhhcceeecccchhhhhcCc------ceeeEeec---CCCcccceeEEEeccc
Confidence 4568889999999999999999998753 78999994 9999999999999875
No 173
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=91.66 E-value=0.052 Score=49.36 Aligned_cols=65 Identities=12% Similarity=0.266 Sum_probs=0.0
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCC
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~ 118 (234)
+-.-+.+.+++.|++|++++.|.++..++ + +|++|.+.+.++...+.|+.||=+..-..+..+..
T Consensus 92 ~~~~l~~~l~e~gv~v~~~t~v~~v~~~~---~--~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG 156 (428)
T PF12831_consen 92 FKAVLDEMLAEAGVEVLLGTRVVDVIRDG---G--RITGVIVETKSGRKEIRAKVFIDATGDGDLAALAG 156 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc---c--ccccccccccccccccccccccccccccccccccc
Confidence 44456666788999999999999999987 5 89999885322356789999999988655655554
No 174
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=91.66 E-value=0.75 Score=39.57 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChhh-HhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~-~~~Ll~ 118 (234)
.+-+.|.+.+++.|++|+.+++|+.+..+++ .++.+ +....+|+ +++||.||-|-..++ +++.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~-----~~~~~-~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDD-----GVTVV-VRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETT-----EEEEE-EEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeeccccccccc-----ccccc-cccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 4567788899999999999999999988763 34433 33223443 689999999988764 776665
No 175
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=91.63 E-value=0.47 Score=41.73 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCC
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~ 118 (234)
.+...+.+.+.++ |++|+.+++|++|.. + +|.+ .+| .+.||.||.|+....- .|++
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~-----~-----~v~t---~~g-~i~a~~VV~A~G~~s~-~l~~ 202 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVET-----G-----TVRT---SRG-DVHADQVFVCPGADFE-TLFP 202 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEec-----C-----eEEe---CCC-cEEeCEEEECCCCChh-hhCc
Confidence 4677888888876 999999999999942 1 3555 245 4689999999887542 3444
No 176
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.56 E-value=0.79 Score=41.62 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+.+.+.+.++++|++++++++|++|..++ + ++ .+.. +|+.+.+|.||.++..
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~---~--~v-~v~~----~g~~i~~D~viva~G~ 251 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDG---D--QV-LVVT----EDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecC---C--EE-EEEE----CCeEEEcCEEEEeeCC
Confidence 466777888999999999999999998754 2 22 2322 6778999999998764
No 177
>PRK14727 putative mercuric reductase; Provisional
Probab=91.56 E-value=0.71 Score=42.56 Aligned_cols=55 Identities=9% Similarity=-0.010 Sum_probs=42.1
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+.+.+.+.+++.|++|+++++|++|..++ + . ..+.. ++..+.+|.||.+++..
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~---~--~-~~v~~----~~g~i~aD~VlvA~G~~ 282 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDD---N--G-FVLTT----GHGELRAEKLLISTGRH 282 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC---C--E-EEEEE----cCCeEEeCEEEEccCCC
Confidence 3567888999999999999999999998764 2 2 22433 33458899999998864
No 178
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.47 E-value=0.93 Score=38.29 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=42.5
Q ss_pred chHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEecCEEEEcCChh
Q 026733 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~--~~~g~~~~aD~VV~a~~~~ 111 (234)
....+.+.++++ |++++++++|++|..++ ++.++++.+ .++++.+++|.||.+.+..
T Consensus 178 ~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~------~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 178 AEKILLDRLRKNPNIEFLWNSTVKEIVGDN------KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred cCHHHHHHHHhCCCeEEEeccEEEEEEccC------cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 356678888888 99999999999997543 566666542 1234678999999998753
No 179
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=91.46 E-value=0.83 Score=40.21 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhCCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPS 119 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll~~ 119 (234)
.-..++...++++||.|+-|..|..+...+. .+ ..++|.+ ++|..+.|+.+|.|+.++.-+ |||.
T Consensus 154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e-~~--~~v~V~T---t~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 154 KSLKALQDKARELGVIFRDGEKVKFIKFVDE-EG--NHVSVQT---TDGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHHHHcCeEEecCcceeeEeeccC-CC--ceeEEEe---ccCCeeecceEEEEecHHHHh-hcCc
Confidence 3477889999999999999999999996542 23 3556665 489889999999999987544 6664
No 180
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.43 E-value=0.71 Score=41.96 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=41.2
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
..+.+.+.+.++++|++++++++|++|..++ + ++ .+.. +++ .+.+|.||.++..
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~---~--~v-~v~~---~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE---N--QV-QVHS---EHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---C--EE-EEEE---cCC-eEEeCEEEEeecC
Confidence 3567888999999999999999999998764 3 22 3433 234 5789999999764
No 181
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=91.36 E-value=0.98 Score=42.83 Aligned_cols=58 Identities=17% Similarity=0.061 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~ 110 (234)
.|...|.+.+.+. |++++.++.|++|..++ | ++.||...+..+| ..+.|+.||+|..-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDD---G--HVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC---C--EEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 5677788777765 79999999999999875 5 8888865322355 36789999999774
No 182
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=91.24 E-value=1.1 Score=42.48 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=46.0
Q ss_pred ccchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~ 110 (234)
..|..+|.+.+++. |++++.++.|++|..++ | ++.||...+..+| ..+.|+.||+|..-
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD---G--RVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC---C--EEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 35788888887764 78999999999999875 5 8999875432355 46789999999764
No 183
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=91.18 E-value=0.89 Score=41.85 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=43.1
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.++++|++|+++++|++|..++ + .+ .+.+.. .+| +.+++|.||.++...
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~---~--~v-~v~~~~-~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG---K--GV-SVAYTD-ADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC---C--EE-EEEEEe-CCCceeEEEcCEEEEccCCc
Confidence 3567888999999999999999999998764 2 22 344431 123 468999999998753
No 184
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=91.15 E-value=0.95 Score=41.44 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.++++|++|+++++|++|..++ + . +.+.. +| +.+++|.||.++...
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~---~--~---v~~~~--~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSYK---K--Q---ALFEY--EGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEcC---C--E---EEEEE--CCceEEEEeCEEEEecCCc
Confidence 567788999999999999999999997554 2 2 22321 33 468999999998853
No 185
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.15 E-value=1 Score=41.24 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=41.1
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee----------------cCCCeEEecCEEEEcCChh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----------------ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~----------------~~~g~~~~aD~VV~a~~~~ 111 (234)
....+.+++.|++|++++.|.+|.-++ + ++++|.+.. +++++.+++|.||.++...
T Consensus 315 ~~~~~~~~~~GV~i~~~~~v~~i~~~~---~--~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 386 (457)
T PRK11749 315 EEEVEHAKEEGVEFEWLAAPVEILGDE---G--RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT 386 (457)
T ss_pred HHHHHHHHHCCCEEEecCCcEEEEecC---C--ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence 345678899999999999999997654 3 456665531 1234578999999998753
No 186
>PRK08244 hypothetical protein; Provisional
Probab=91.11 E-value=1.1 Score=41.23 Aligned_cols=63 Identities=10% Similarity=0.010 Sum_probs=45.8
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEecCEEEEcCChh-hHhhhCC
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g-~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
+-+.|.+.+++.|++|+.+++|+++..+++ .+ .|.+.. .+| +++++|.||.+-... .+++.+.
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~-----~v-~v~~~~-~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGD-----GV-EVVVRG-PDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCC-----eE-EEEEEe-CCccEEEEeCEEEECCCCChHHHHhcC
Confidence 456677778889999999999999988763 33 344432 245 578999999998765 4666664
No 187
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.09 E-value=0.92 Score=41.76 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=40.1
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee--c---------CCCeEEecCEEEEcCCh
Q 026733 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--A---------TDKKVVQADAYVAACDV 110 (234)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~--~---------~~g~~~~aD~VV~a~~~ 110 (234)
..+.+++.|+++++++.+++|.-++ | ++++|++.. . ++.+.+++|.||.++..
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~---g--~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGEN---G--KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccC---C--EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 4567788999999999999997544 5 788877541 0 12257899999999874
No 188
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=91.08 E-value=0.61 Score=41.65 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=37.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEE-EeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREI-LYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i-~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+++.|. ++-|.++ ++++|++| ...++ +. ..+.|....+.+.....+|+||.|+|.+.
T Consensus 129 qI~~~ll---~~S~A~v-l~~~Vt~I~~~~~~--~~-~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 129 QIFEGLL---EASGANV-LNTTVTSITRRSSD--GY-SLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred HHHHHHH---HHccCcE-ecceeEEEEeccCC--Cc-eeEEEEEecCCCCccccCCEEEECCCccc
Confidence 4555554 5689999 99999999 34432 31 34455554222333445799999999963
No 189
>PLN02815 L-aspartate oxidase
Probab=91.06 E-value=0.87 Score=43.33 Aligned_cols=59 Identities=7% Similarity=0.059 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcce--EEEEEEeecCCCe--EEecCEEEEcCC
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETY--VKGLAMSKATDKK--VVQADAYVAACD 109 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~--~~~v~~~~~~~g~--~~~aD~VV~a~~ 109 (234)
.+...|.+.++++ |++|+.++++.+|..+++ |+ + +.||...+..+|+ .+.|++||+|+.
T Consensus 156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~--g~-~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQD--GG-SIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred HHHHHHHHHHHhcCCCEEEeceEhheeeeecC--CC-ccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 5778888888776 899999999999998642 31 3 7898764323554 567999999977
No 190
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.05 E-value=0.92 Score=40.31 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=44.0
Q ss_pred chHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-Hhhh
Q 026733 49 LSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRL 116 (234)
Q Consensus 49 l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~L 116 (234)
+.+.|.+.+.+.| ++++.+++|+++..++ + .+ .|.+ .+|+.+.||.||.|..... .++.
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~--~v-~v~~---~~g~~~~ad~vV~AdG~~S~~r~~ 171 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG---D--GV-TVFD---QQGNRWTGDALIGCDGVKSVVRQS 171 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC---C--ce-EEEE---cCCCEEecCEEEECCCcChHHHhh
Confidence 4567788877775 8999999999998765 2 23 3555 3778899999999988754 4443
No 191
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=90.97 E-value=0.66 Score=42.24 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=41.7
Q ss_pred cccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+.+.+.+.+.++++|++++++++|++|. + . .|.+. +|+.+++|.||.+++.
T Consensus 188 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~---~-----~v~~~---~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 188 DADMNQPILDELDKREIPYRLNEEIDAIN--G---N-----EVTFK---SGKVEHYDMIIEGVGT 239 (438)
T ss_pred CHHHHHHHHHHHHhcCCEEEECCeEEEEe--C---C-----EEEEC---CCCEEEeCEEEECcCC
Confidence 34567889999999999999999999994 2 1 25553 6778899999999875
No 192
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.97 E-value=1 Score=43.30 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cCCC-----------eEEecCEEEEcCChh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATDK-----------KVVQADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~------~~~g-----------~~~~aD~VV~a~~~~ 111 (234)
....+.+++.|++|++++.+.+|..+++ | ++++|++.. ..+| ..+++|.||.++...
T Consensus 510 ~~e~~~~~~~Gv~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~ 583 (654)
T PRK12769 510 KKEVKNAREEGANFEFNVQPVALELNEQ--G--HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFN 583 (654)
T ss_pred HHHHHHHHHcCCeEEeccCcEEEEECCC--C--eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCC
Confidence 4456778999999999999999986542 5 788887631 0112 268999999998753
No 193
>PTZ00058 glutathione reductase; Provisional
Probab=90.85 E-value=1 Score=42.49 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=43.5
Q ss_pred cccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.+.|+++|++|++++.|++|.-+++ + ++ .+... .+++.+++|.||.++...
T Consensus 277 d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~--~--~v-~v~~~--~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 277 DETIINELENDMKKNNINIITHANVEEIEKVKE--K--NL-TIYLS--DGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC--C--cE-EEEEC--CCCEEEECCEEEECcCCC
Confidence 345778899999999999999999999986531 2 22 23332 245679999999998753
No 194
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.80 E-value=1.3 Score=40.78 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=40.4
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-----------------cCCCeEEecCEEEEcCCh
Q 026733 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----------------ATDKKVVQADAYVAACDV 110 (234)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-----------------~~~g~~~~aD~VV~a~~~ 110 (234)
...+.+++.|+++++++.+.+|..+++ | ++++|++.. +++.+.+++|.||.++..
T Consensus 325 ~e~~~~~~~GV~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 325 REVANAREEGVEFLFNVQPVYIECDED--G--RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred HHHHHHHhcCCEEEecCCcEEEEECCC--C--eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 445667889999999999999976542 5 788776631 012246889999999874
No 195
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=90.70 E-value=1.1 Score=39.77 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++.| ++++ +++|++|..++ + . +.|.+ .+|+.+.||.||.+.... .+++.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~---~--~-~~v~~---~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP---D--A-ATLTL---ADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC---C--e-EEEEE---CCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 46778888899988 8999 99999998765 2 2 34655 367789999999998865 4666553
No 196
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.65 E-value=0.92 Score=40.59 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+.+. |++++++++|++|..+++ + +.|.+.++++...+.||.||.|-... .+++.+.
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~--~----~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQD--A----ATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--e----eEEEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 3566677777665 789999999999987752 2 33555321112468999999998865 4666554
No 197
>PRK07588 hypothetical protein; Provisional
Probab=90.60 E-value=0.79 Score=40.77 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=42.1
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhC
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll 117 (234)
|.+.|.+.+. .|++|+++++|++|+.++ + .+ .|.+ ++|+.+.+|.||.|-... .+++.+
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~---~--~v-~v~~---~~g~~~~~d~vIgADG~~S~vR~~~ 164 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHR---D--GV-RVTF---ERGTPRDFDLVIGADGLHSHVRRLV 164 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECC---C--eE-EEEE---CCCCEEEeCEEEECCCCCccchhhc
Confidence 3444555443 479999999999998876 3 33 3555 478888999999998875 466543
No 198
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=90.51 E-value=1.2 Score=39.89 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+-|++..++.|++++.+++|..+..+++ + .+.++.. ++.++.|+.||.|-.+. .+.+-+.
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~--~--~~~~~~~----~~~e~~a~~vI~AdG~~s~l~~~lg 159 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDD--G--VVVGVRA----GDDEVRAKVVIDADGVNSALARKLG 159 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCC--c--EEEEEEc----CCEEEEcCEEEECCCcchHHHHHhC
Confidence 3455688899999999999999999999984 4 4444332 45789999999998875 4555443
No 199
>PRK13748 putative mercuric reductase; Provisional
Probab=90.36 E-value=1 Score=42.23 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=42.5
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.+++.|++|+++++|++|..++ + . ..+.. ++..+.+|.||.++...
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~---~--~-~~v~~----~~~~i~~D~vi~a~G~~ 364 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD---G--E-FVLTT----GHGELRADKLLVATGRA 364 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--E-EEEEe----cCCeEEeCEEEEccCCC
Confidence 3577889999999999999999999998664 3 2 22433 33468999999998854
No 200
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.19 E-value=1.1 Score=41.13 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=49.0
Q ss_pred CcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh-hhHhhh
Q 026733 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV-PGIKRL 116 (234)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~-~~~~~L 116 (234)
..+.+.+.+.+.|++.|++++++++|++++..+ + . ..+.+. +|+ .+++|.|+.|+.- +....|
T Consensus 212 ~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~---~--~-v~v~~~---~g~~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 212 EDPEISKELTKQLEKGGVKILLNTKVTAVEKKD---D--G-VLVTLE---DGEGGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred CCHHHHHHHHHHHHhCCeEEEccceEEEEEecC---C--e-EEEEEe---cCCCCEEEeeEEEEccCCccCCCCC
Confidence 445789999999999889999999999998876 2 3 455553 444 7889999999884 455544
No 201
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.10 E-value=1.2 Score=41.44 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.+++.|++++++++|++|..++ + -..|.+ .+|+.+.+|.+|.|+...
T Consensus 268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~---~---~~~v~~---~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 268 QLAANLEEHIKQYPIDLMENQRAKKIETED---G---LIVVTL---ESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHhCCeEEcCCEEEEEEecC---C---eEEEEE---CCCCEEEeCEEEECCCCC
Confidence 567888999999999999999999998765 2 234555 377789999999998854
No 202
>PRK09126 hypothetical protein; Provisional
Probab=89.91 E-value=1.4 Score=39.14 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=43.3
Q ss_pred chHHHHHHHH-HCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhC
Q 026733 49 LSGPIRKYIT-DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (234)
Q Consensus 49 l~~~l~~~l~-~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll 117 (234)
+.+.+.+.+. ..|++|+.+++|++++.++ + . +.|.+ ++|+.+.+|.||.|-..+ .+++.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~---~--~-~~v~~---~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD---D--G-AQVTL---ANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC---C--e-EEEEE---cCCCEEEeCEEEEeCCCCchhhHhc
Confidence 3344555543 4689999999999998765 2 2 34666 378889999999998875 466655
No 203
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=89.84 E-value=1.2 Score=45.73 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHC---CcEEEcCceeeEEEeccC--CCC--cceEEEEEEeec--CCCe--EEecCEEEEcCC
Q 026733 48 YLSGPIRKYITDK---GGRFHLRWGCREILYDKA--ANA--ETYVKGLAMSKA--TDKK--VVQADAYVAACD 109 (234)
Q Consensus 48 ~l~~~l~~~l~~~---Gg~i~~~~~V~~i~~~~~--~~~--~~~~~~v~~~~~--~~g~--~~~aD~VV~a~~ 109 (234)
.+...|.+.+++. |++|+++++|+++..+++ ++| .++|+||...+. .+|+ .+.|++||+|+.
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATG 617 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATG 617 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecC
Confidence 3667788887764 999999999999998641 001 017999987532 1443 578999999976
No 204
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=89.67 E-value=1.3 Score=39.69 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=45.5
Q ss_pred chHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
+-+.|.+.+.+. |++|+.+++|++|..+++ + +.|.+ .+|+.+.||.||.|-... .+++.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~----~~v~~---~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGES--E----AWLTL---DNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--e----EEEEE---CCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 345666666664 799999999999987752 2 34666 478899999999998875 4666654
No 205
>PRK08013 oxidoreductase; Provisional
Probab=89.53 E-value=1.3 Score=39.71 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=45.8
Q ss_pred chHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
+-+.|.+.+++. |++++++++|++|+.+++ + +.|.+ .+|+.+.||.||-|-... .+++.+.
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~----v~v~~---~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGEN--E----AFLTL---KDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--e----EEEEE---cCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 456677777775 789999999999987652 3 34555 378899999999997765 4666654
No 206
>PRK12831 putative oxidoreductase; Provisional
Probab=89.37 E-value=1.6 Score=40.12 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=38.9
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cC---------CC--eEEecCEEEEcCChh
Q 026733 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT---------DK--KVVQADAYVAACDVP 111 (234)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~------~~---------~g--~~~~aD~VV~a~~~~ 111 (234)
+.+++.|++|++++.+.+|..+++ | ++++|++.. .. +| ..+++|.||.++...
T Consensus 326 ~~a~~eGV~i~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~ 395 (464)
T PRK12831 326 HHAKEEGVIFDLLTNPVEILGDEN--G--WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTS 395 (464)
T ss_pred HHHHHcCCEEEecccceEEEecCC--C--eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCC
Confidence 456789999999999999986542 5 788877631 00 12 268999999998753
No 207
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=89.31 E-value=1.6 Score=38.62 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=43.3
Q ss_pred hHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 50 SGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 50 ~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
-+.|.+.+.+ .|++|+.+++|+++..++ + . +.|.+ .+|+.+.+|.||.+.... .+.+.+.
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~---~--~-~~v~~---~~g~~~~a~~vI~AdG~~S~vr~~~~ 176 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQ---G--S-VRVTL---DDGETLTGRLLVAADGSHSALREALG 176 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcC---C--e-EEEEE---CCCCEEEeCEEEEecCCChhhHHhhC
Confidence 3556666665 479999999999998765 2 2 34655 377789999999998865 4655553
No 208
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=89.23 E-value=1.5 Score=39.15 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh-hHhhhCCC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP-GIKRLLPS 119 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~-~~~~Ll~~ 119 (234)
.+.+.|.+..++.|++++++++|+++.-.++ . ...|.+. .+|+ .++||.||-|-..+ .+++.++.
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~---~~~V~~~--~~G~~~~i~ad~vVgADG~~S~vR~~~~~ 171 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS--D---RPYVTYE--KDGEEHRLDCDFIAGCDGFHGVSRASIPA 171 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--C---ceEEEEE--cCCeEEEEEeCEEEECCCCCCchhhhcCc
Confidence 3456777777889999999999999976221 2 2345553 2553 68899999987776 47776653
No 209
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.06 E-value=1.8 Score=40.27 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=41.1
Q ss_pred HHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecC--CCeEEecCEEEEcCChh
Q 026733 51 GPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT--DKKVVQADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~--~g~~~~aD~VV~a~~~~ 111 (234)
..+.+.+++ +|++|++++.|++|.-++ + ++.+|.+.... +++.+++|.||.++...
T Consensus 391 ~~l~~~l~~~~gV~i~~~~~v~~i~~~~---~--~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 391 KVLQDKLKSLPNVDILTSAQTTEIVGDG---D--KVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred HHHHHHHhcCCCCEEEECCeeEEEEcCC---C--EEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 345677776 699999999999997654 4 67788775321 23578999999997643
No 210
>PLN02546 glutathione reductase
Probab=88.93 E-value=1.6 Score=41.19 Aligned_cols=59 Identities=14% Similarity=0.069 Sum_probs=42.8
Q ss_pred CcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+.+.+.+.+.|+++|++|+++++|++|...++ + .+ .+.. .+++...+|.||.++...
T Consensus 291 ~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~--g--~v-~v~~---~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 291 FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD--G--SL-SLKT---NKGTVEGFSHVMFATGRK 349 (558)
T ss_pred cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC--C--EE-EEEE---CCeEEEecCEEEEeeccc
Confidence 3445667788999999999999999999976542 3 22 3443 245555689999998854
No 211
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=88.89 E-value=0.74 Score=43.99 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=48.2
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+.+++++..++.|+.|.-+++|++|+++.+ +..+|++. .| .+++..||-++.+++
T Consensus 188 ~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~---~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 188 GLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP---HG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc---Cc-ceecceEEechhHHH
Confidence 6799999999999999999999999999874 45688872 44 678999999999875
No 212
>PRK06126 hypothetical protein; Provisional
Probab=88.82 E-value=2.2 Score=39.91 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=44.1
Q ss_pred chHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh-hHhhhCC
Q 026733 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
+-+.|.+.+++. |++|+++++|++|..+++ .++ +.+.+..+|+ ++.+|+||.+-... .+++.+.
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~-----~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDAD-----GVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCC-----eEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 344566666654 789999999999988763 344 4443222453 68899999998875 4666664
No 213
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.65 E-value=1.9 Score=40.14 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+.+.+.+.+++.|++++++++|++|..++ + .+.|.+ .+|+.+.+|.||.|...
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~---~---~~~V~~---~~g~~i~a~~vViAtG~ 320 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAA---G---LIEVEL---ANGAVLKAKTVILATGA 320 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C---eEEEEE---CCCCEEEcCEEEECCCC
Confidence 578889999999999999999999998875 2 244555 37778999999999886
No 214
>PRK06996 hypothetical protein; Provisional
Probab=88.57 E-value=1.5 Score=39.24 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEecCEEEEcCCh--hhHhhhC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDV--PGIKRLL 117 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g-~~~~aD~VV~a~~~--~~~~~Ll 117 (234)
.+-+.|.+.+++.|++++.+++|+++..+++ + +.+.+.+ .+| +.+.+|.||-|-.. ....+.+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~----v~v~~~~-~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDAD--G----VTLALGT-PQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCC--e----EEEEECC-CCcceEEeeeEEEECCCCCchHHHHHc
Confidence 4678889999999999999999999976652 2 2344421 122 68999999999552 3445543
No 215
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=88.35 E-value=2 Score=43.44 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=44.4
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-cCCCeEEecCEEEEcCChh
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-~~~g~~~~aD~VV~a~~~~ 111 (234)
+...+.+.++++|++|++++.|++|.-+ + ++.+|++.. .++++.+++|.|+++....
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~----~--~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEGG----K--RVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEecC----C--cEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 4567788899999999999999999644 3 567777642 2356789999999998753
No 216
>PLN02697 lycopene epsilon cyclase
Probab=88.26 E-value=1.9 Score=40.43 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+.+.|.+.+.+.|+++ ++++|++|..+++ .+..+.+ .+|+.+.||.||.|.....
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-----~~~vv~~---~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASD-----GLRLVAC---EDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-----cEEEEEE---cCCcEEECCEEEECCCcCh
Confidence 45688888888999998 7889999987652 3333334 3788899999999988765
No 217
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=88.02 E-value=1.7 Score=38.60 Aligned_cols=58 Identities=5% Similarity=0.047 Sum_probs=42.9
Q ss_pred HHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026733 52 PIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (234)
Q Consensus 52 ~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~Ll~ 118 (234)
.|.+.+++. |++|+.+++|++++.+++ + + .|.+ .+|+++++|.||.|-..++ +++.+.
T Consensus 115 ~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~---~-~v~~---~~g~~~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 115 GLWQQFAQYPNLTLMCPEKLADLEFSAE--G---N-RVTL---ESGAEIEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred HHHHHHHhCCCeEEECCCceeEEEEcCC--e---E-EEEE---CCCCEEEeeEEEEecCCCchhHHhcC
Confidence 455555554 689999999999998763 3 3 4666 3788999999999988764 666553
No 218
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=87.77 E-value=2.2 Score=37.53 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-----------------cCCCeEEecCEEEEcCChh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----------------ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-----------------~~~g~~~~aD~VV~a~~~~ 111 (234)
..+.+.++++|+++++++.|.+++-+ + ++.+|++.. .++++.+++|.||.++...
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~----~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGE----G--RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecC----C--cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 56677899999999999999998644 2 455555421 1234578999999997753
No 219
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=87.48 E-value=1.8 Score=38.16 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEE--EEEeecCCCeEEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKG--LAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~--v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
..+.+.+.+.++++|+++++++++.+|...++ .+.. +.. .+++.+.+|.++.+.+.
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~-----~~~~~~~~~---~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGN-----TLVVERVVG---IDGEEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcccC-----cceeeEEEE---eCCcEEEeeEEEEeecc
Confidence 35889999999999999999999999998762 3333 334 38889999999999874
No 220
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=87.46 E-value=2.4 Score=37.36 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+...+++.++++| ..++.+++|..+..++ ++++|.+ .+|+ +.||.||.++...+
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~------~~~~v~t---~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG------RVVGVET---DGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC------cEEEEEe---CCcc-EEeCEEEEcCchHH
Confidence 57889999999999 5677799999998861 2466766 3555 99999999998764
No 221
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=87.41 E-value=2 Score=41.03 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+...|.+.+++. |+++ +.+.|++|..++ + ++.||.+ .+|..+.|+.||.|...
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~---g--rV~GV~t---~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVEN---G--RVVGVVT---QDGLEFRAKAVVLTTGT 155 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecC---C--EEEEEEE---CCCCEEECCEEEEeeCc
Confidence 3457777888776 6777 567899998876 4 7999988 47889999999999884
No 222
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=87.20 E-value=2.1 Score=40.85 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+...|.+.+++. |++++ ...|+++..+++ + ++.+|.+. +|..+.||.||.|+...
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~--g--~V~GV~t~---~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDN--D--EIKGVVTQ---DGLKFRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecC--C--cEEEEEEC---CCCEEECCEEEEccCcc
Confidence 4567788888888 55665 557888877632 5 78999884 78889999999998865
No 223
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=86.70 E-value=3.3 Score=38.81 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=43.0
Q ss_pred hHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe-EEecCEEEEcCChh-hHhhhCC
Q 026733 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~-~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
-+.|.+.+++. |++|+++++|+++..+++ + + .+.+.. .+|+ ++.+|.||.+-... .+++++.
T Consensus 128 e~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~---v-~v~~~~-~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 128 EGYLVERAQALPNIDLRWKNKVTGLEQHDD--G---V-TLTVET-PDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHhCCCcEEEeCCEEEEEEEcCC--E---E-EEEEEC-CCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 34566667765 689999999999988762 2 3 233321 2443 68999999998865 4667664
No 224
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=86.57 E-value=3.3 Score=39.76 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=38.6
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec-----------------CCCeEEecCEEEEcCChh
Q 026733 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-----------------TDKKVVQADAYVAACDVP 111 (234)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~-----------------~~g~~~~aD~VV~a~~~~ 111 (234)
+..++.|++|++++.+++|..+++ | ++++|++... ++...+++|.||.++...
T Consensus 497 ~~a~~eGv~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~ 566 (639)
T PRK12809 497 VNAREEGVEFQFNVQPQYIACDED--G--RLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQ 566 (639)
T ss_pred HHHHHcCCeEEeccCCEEEEECCC--C--eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCC
Confidence 346789999999999999987553 5 7888765210 112368899999998743
No 225
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=86.46 E-value=2.9 Score=37.03 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
.+.+.|.+.+.+.|++++ ..+|+.+..+++ ..+.|.+ .+|+.+.||.||.|.+...
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-----~~~~v~~---~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGV-----ALSTVYC---AGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-----ceeEEEe---CCCCEEEeCEEEECCCCch
Confidence 567888888899999886 668888877632 2455665 3777899999999998765
No 226
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=86.46 E-value=1.2 Score=37.22 Aligned_cols=71 Identities=20% Similarity=0.132 Sum_probs=53.6
Q ss_pred eeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhhHhhhC
Q 026733 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLL 117 (234)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~~~~Ll 117 (234)
.|+|.|-....|.+.|.+.-++.|-+|.+. .|.++..+. +--.+.. +.+.+.+|+||.+....+=+--+
T Consensus 61 PGFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss------kpF~l~t----d~~~v~~~avI~atGAsAkRl~~ 129 (322)
T KOG0404|consen 61 PGFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS------KPFKLWT----DARPVTADAVILATGASAKRLHL 129 (322)
T ss_pred CCCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC------CCeEEEe----cCCceeeeeEEEecccceeeeec
Confidence 677877777789999999999999998765 588888875 2333433 67788999999998876544456
Q ss_pred CC
Q 026733 118 PS 119 (234)
Q Consensus 118 ~~ 119 (234)
|.
T Consensus 130 pg 131 (322)
T KOG0404|consen 130 PG 131 (322)
T ss_pred CC
Confidence 64
No 227
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=86.32 E-value=3.1 Score=37.48 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=49.1
Q ss_pred cCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC--CeEEecCEEEEcCCh
Q 026733 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD--KKVVQADAYVAACDV 110 (234)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~--g~~~~aD~VV~a~~~ 110 (234)
..+.+...+.....+.|+.+|.+++++++|..+..+++ | .+ .|++....+ .+++++|....++.-
T Consensus 246 i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d--g--~v-~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 246 IGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD--G--PV-EIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred hccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC--C--ce-EEEEEecCCCceeEEEeeEEEEEccC
Confidence 34456667899999999999999999999999999884 5 33 344443233 357889988887763
No 228
>PRK05868 hypothetical protein; Validated
Probab=86.23 E-value=3.2 Score=36.88 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=38.4
Q ss_pred HCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhC
Q 026733 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (234)
Q Consensus 59 ~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll 117 (234)
..|++++++++|++|..++ + . +.|.+ .+|++++||.||-|-..+ .+++.+
T Consensus 116 ~~~v~i~~~~~v~~i~~~~---~--~-v~v~~---~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG---D--S-VRVTF---ERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEecC---C--e-EEEEE---CCCCeEEeCEEEECCCCCchHHHHh
Confidence 4689999999999998664 2 2 34666 478889999999998876 476655
No 229
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=86.12 E-value=3.8 Score=39.20 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
.+...+.+.+++.|++|+.+++|.++..+++.+| +++||...+..+|+ .+.|+.||+|+.-.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G--rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN--RIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC--eEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 3455566667778889999999999998641004 89998764323454 57899999998754
No 230
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=86.07 E-value=3.4 Score=38.64 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=44.1
Q ss_pred hHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChh-hHhhhCCC
Q 026733 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP-GIKRLLPS 119 (234)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~-~~~~Ll~~ 119 (234)
-+.|.+.+++. |++|+.+++|++|+.+++ + + .|.+.+ .+| ++++||.||-+-... .+++.+..
T Consensus 116 e~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~---v-~v~~~~-~~G~~~~i~ad~vVgADG~~S~vR~~lg~ 182 (538)
T PRK06183 116 EAVLRAGLARFPHVRVRFGHEVTALTQDDD--G---V-TVTLTD-ADGQRETVRARYVVGCDGANSFVRRTLGV 182 (538)
T ss_pred HHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--e---E-EEEEEc-CCCCEEEEEEEEEEecCCCchhHHHHcCC
Confidence 34555666664 899999999999998763 3 3 344431 145 578999999998775 47777653
No 231
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.00 E-value=3.1 Score=38.80 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=41.4
Q ss_pred HHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChh
Q 026733 51 GPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~ 111 (234)
..+.+.+++ .|++|++++.|++|.-++ + ++.+|.+....+| +.+.+|.|+.++...
T Consensus 390 ~~l~~~l~~~~gI~i~~~~~v~~i~~~~---g--~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 390 QVLQDKLRSLPNVTIITNAQTTEVTGDG---D--KVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHHHHhcCCCcEEEECcEEEEEEcCC---C--cEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 456666776 599999999999998664 4 6788877532233 468899999997653
No 232
>PRK07538 hypothetical protein; Provisional
Probab=85.53 E-value=3.5 Score=37.00 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=41.2
Q ss_pred chHHHHHHHHH-CCc-EEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-HhhhC
Q 026733 49 LSGPIRKYITD-KGG-RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (234)
Q Consensus 49 l~~~l~~~l~~-~Gg-~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~Ll 117 (234)
|-+.|.+.+.+ .|. +|+++++|+++..+++ + .+..+.....++++++.||.||-|-..++ +++.+
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~--~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--V--TVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eEEEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 34556666655 474 6999999999987653 3 23232211112235889999999988764 66644
No 233
>PLN02463 lycopene beta cyclase
Probab=85.46 E-value=3.2 Score=38.09 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.|.+.+.+.|++++ .++|++|..++ + + +.|.+ ++|+.+.||.||.|....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~---~--~-~~V~~---~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE---S--K-SLVVC---DDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC---C--e-EEEEE---CCCCEEEcCEEEECcCCC
Confidence 455778888888999996 67999998875 2 2 45666 478889999999998765
No 234
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=85.33 E-value=2 Score=38.63 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=40.8
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-HhhhC
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~Ll 117 (234)
|.+.|.+.+. ++.++++++|++|..+++ + +.|.+ .+|+.+.+|.||.|-..++ +++.+
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~--~----~~v~~---~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAE--E----VQVLF---TDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCC--c----EEEEE---cCCCEEEeeEEEECCCccHHHHHHh
Confidence 4445555442 457899999999987652 2 44655 3788899999999988764 66544
No 235
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=85.01 E-value=2.9 Score=37.10 Aligned_cols=47 Identities=13% Similarity=-0.010 Sum_probs=36.9
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
..+.+++.|++++++++|++|..++ + .|.+ +|+.+.+|.+|+|+...
T Consensus 64 ~~~~~~~~gv~~~~~~~V~~id~~~------~--~v~~----~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 64 AGEFAEQFNLRLFPHTWVTDIDAEA------Q--VVKS----QGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHHHhCCCEEECCCEEEEEECCC------C--EEEE----CCeEEeCCEEEECCCCC
Confidence 4456678899999999999998865 2 2434 67789999999998754
No 236
>PRK02106 choline dehydrogenase; Validated
Probab=84.94 E-value=1.4 Score=41.54 Aligned_cols=47 Identities=6% Similarity=0.027 Sum_probs=36.4
Q ss_pred HCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCChh
Q 026733 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (234)
Q Consensus 59 ~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~~ 111 (234)
+.+.+|++++.|++|.+++ + +++||++... ++ ..+.++.||+++..-
T Consensus 213 ~~nl~i~~~a~V~rI~~~~---~--~a~GV~~~~~-~~~~~~~~ak~VILaaGai 261 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG---K--RAVGVEYERG-GGRETARARREVILSAGAI 261 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC---C--eEEEEEEEeC-CcEEEEEeeeeEEEccCCC
Confidence 4568999999999999986 5 8999998632 22 245799999998853
No 237
>PLN02661 Putative thiazole synthesis
Probab=84.76 E-value=4.8 Score=35.84 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=42.6
Q ss_pred cchHHHHHHHH-HCCcEEEcCceeeEEEeccCCCCcceEEEEEEe------ecCC-----CeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYIT-DKGGRFHLRWGCREILYDKAANAETYVKGLAMS------KATD-----KKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~-~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~------~~~~-----g~~~~aD~VV~a~~~~ 111 (234)
.+.+.|.+... +.|++|+.++.|.++..++ + ++.||.+. +..+ ...+.|++||+|+...
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~---g--rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG---D--RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecC---C--EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 34556776444 5789999999999999986 5 88998752 1111 1368999999998843
No 238
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=84.72 E-value=1.5 Score=43.10 Aligned_cols=49 Identities=10% Similarity=0.048 Sum_probs=39.6
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
...++++++|++++++++|++|..++ . .|.+ .+|+.+.+|.+|.|+...
T Consensus 59 ~~~~~~~~~gv~~~~g~~V~~Id~~~---k-----~V~~---~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 59 NSKDWYEKHGITLYTGETVIQIDTDQ---K-----QVIT---DAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCHHHHHHCCCEEEcCCeEEEEECCC---C-----EEEE---CCCcEeeCCEEEECCCCC
Confidence 44677889999999999999998875 2 2555 378889999999998854
No 239
>PRK07846 mycothione reductase; Reviewed
Probab=84.65 E-value=3.7 Score=37.54 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+. .+.|++++++++|++|..++ + + ..|.+ .+|+.+++|.||.++...
T Consensus 208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~---~--~-v~v~~---~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 208 DISERFTEL-ASKRWDVRLGRNVVGVSQDG---S--G-VTLRL---DDGSTVEADVLLVATGRV 261 (451)
T ss_pred HHHHHHHHH-HhcCeEEEeCCEEEEEEEcC---C--E-EEEEE---CCCcEeecCEEEEEECCc
Confidence 345555544 46789999999999997654 2 2 23555 377889999999998754
No 240
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=84.23 E-value=1.9 Score=37.96 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=57.3
Q ss_pred eeecCCCCc---ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChhh
Q 026733 38 LRMLKGSPD---VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (234)
Q Consensus 38 ~g~~~g~~~---~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~ 112 (234)
+-+|+.+++ -.+-+.|.+.+++.||-+..|-+|.+..+.+ | +|+.|.++ ++. .+.||.+|+|..--.
T Consensus 246 ~elPtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~---~--~v~~i~tr---n~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 246 FELPTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKG---G--RVTEIYTR---NHADIPLRADFYVLASGSFF 317 (421)
T ss_pred eecCCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeeeeC---C--eEEEEEec---ccccCCCChhHeeeeccccc
Confidence 455666643 2568899999999999999999999999997 5 89998774 554 456999999977655
Q ss_pred HhhhCCC
Q 026733 113 IKRLLPS 119 (234)
Q Consensus 113 ~~~Ll~~ 119 (234)
-+.|+.+
T Consensus 318 skGLvae 324 (421)
T COG3075 318 SKGLVAE 324 (421)
T ss_pred cccchhh
Confidence 5556554
No 241
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=84.18 E-value=3.9 Score=36.20 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=45.4
Q ss_pred cchHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.|.+.|.+.+++.+ ++++++++|++|..+++ . +.|.+ +++ .+.||.||-|-... .+++.+.
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-----~-v~v~~---~~~-~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHND-----Y-SIIKF---DDK-QIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC-----e-EEEEE---cCC-EEeeCEEEEeCCCCchhHHhcC
Confidence 45777788888776 89999999999988762 2 33655 244 89999999997776 4666653
No 242
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=84.14 E-value=3.9 Score=39.99 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=39.2
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-----------------cCCCeEEecCEEEEcCChh
Q 026733 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----------------ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-----------------~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+++.|++|++++.+.+|..+++ | ++++|++.. +++...+++|.||.++...
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEK--G--WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCC--C--EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence 467889999999999999976542 5 788877631 0112368999999998753
No 243
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=84.09 E-value=4 Score=37.07 Aligned_cols=64 Identities=6% Similarity=0.082 Sum_probs=46.4
Q ss_pred chHHHHHHHHHCC---cEEEcCceeeEEEec----cCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 49 LSGPIRKYITDKG---GRFHLRWGCREILYD----KAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~G---g~i~~~~~V~~i~~~----~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
+.+.|.+.+++.+ ++++++++|++|..+ ++ ++ ..+.|.+ .+|+++.||.||-|=... .+++.+.
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~-~~--~~v~v~~---~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPND-NS--NWVHITL---SDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccC-CC--CceEEEE---cCCCEEEeeEEEEecCCCChhHHHcC
Confidence 5567788888876 899999999999863 10 01 1234655 478899999999997765 4777664
No 244
>PRK07236 hypothetical protein; Provisional
Probab=83.90 E-value=3.6 Score=36.55 Aligned_cols=50 Identities=24% Similarity=0.225 Sum_probs=37.0
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-Hhh-hCCC
Q 026733 61 GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR-LLPS 119 (234)
Q Consensus 61 Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~-Ll~~ 119 (234)
+++|+++++|++|+.++ + . +.|.+ .+|+.+.+|.||.|-..++ +++ +++.
T Consensus 112 ~~~i~~~~~v~~i~~~~---~--~-v~v~~---~~g~~~~ad~vIgADG~~S~vR~~l~~~ 163 (386)
T PRK07236 112 AERYHLGETLVGFEQDG---D--R-VTARF---ADGRRETADLLVGADGGRSTVRAQLLPD 163 (386)
T ss_pred CcEEEcCCEEEEEEecC---C--e-EEEEE---CCCCEEEeCEEEECCCCCchHHHHhCCC
Confidence 46799999999998875 2 3 33656 3788999999999977654 555 4443
No 245
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=83.71 E-value=4.3 Score=41.17 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=40.1
Q ss_pred HHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cC--------CC--eEEecCEEEEcCChh
Q 026733 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT--------DK--KVVQADAYVAACDVP 111 (234)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~------~~--------~g--~~~~aD~VV~a~~~~ 111 (234)
.+.+++.|++|++++.+.+|..+++ | ++++|++.. .. +| ..+++|.||.++...
T Consensus 616 ~~~a~eeGI~~~~~~~p~~i~~~~~--G--~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 616 IRHAKEEGIDFFFLHSPVEIYVDAE--G--SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHHhCCCEEEecCCcEEEEeCCC--C--eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 3567889999999999999987543 6 788887641 01 12 368999999998853
No 246
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=83.55 E-value=4.2 Score=37.23 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+. .+.|++++++++|+++..++ + . ..|.+ .+|+.+++|.||.+++..
T Consensus 211 ~~~~~l~~~-~~~gI~i~~~~~V~~i~~~~---~--~-v~v~~---~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 211 DISDRFTEI-AKKKWDIRLGRNVTAVEQDG---D--G-VTLTL---DDGSTVTADVLLVATGRV 264 (452)
T ss_pred HHHHHHHHH-HhcCCEEEeCCEEEEEEEcC---C--e-EEEEE---cCCCEEEcCEEEEeeccC
Confidence 455555554 45789999999999998764 2 2 23444 367789999999998754
No 247
>PRK13984 putative oxidoreductase; Provisional
Probab=83.12 E-value=4.4 Score=38.54 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=36.8
Q ss_pred HHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee----------------cCCCeEEecCEEEEcCChh
Q 026733 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----------------ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 57 l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~----------------~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+.|++|++++.+.+|..++ + ++++|++.. +++++.+++|.||.++...
T Consensus 472 ~~~~GV~i~~~~~~~~i~~~~---g--~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 472 GLEEGVVIYPGWGPMEVVIEN---D--KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred HHHcCCEEEeCCCCEEEEccC---C--EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 456899999999999986654 5 788876531 0123478999999998754
No 248
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=83.00 E-value=3.7 Score=36.77 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=36.9
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+++.|++++++++|..|..++ . .|.+ .+|+.+.+|++|.|+...
T Consensus 66 ~~~~~~~i~~~~g~~V~~id~~~---~-----~v~~---~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 66 NWWQENNVHLHSGVTIKTLGRDT---R-----ELVL---TNGESWHWDQLFIATGAA 111 (396)
T ss_pred HHHHHCCCEEEcCCEEEEEECCC---C-----EEEE---CCCCEEEcCEEEEccCCC
Confidence 45678999999999999998875 2 2545 378889999999998754
No 249
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=82.98 E-value=3 Score=37.76 Aligned_cols=53 Identities=6% Similarity=0.036 Sum_probs=37.9
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEe--cCEEEEcCChh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQ--ADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~--aD~VV~a~~~~ 111 (234)
....+.+++.|++++++++|++|..++ + .|.+....+|+.+. +|++|+|+...
T Consensus 60 ~~~~~~~~~~gv~~~~~~~V~~id~~~---~-----~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 60 ARTPEEFIKSGIDVKTEHEVVKVDAKN---K-----TITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred cCCHHHHHHCCCeEEecCEEEEEECCC---C-----EEEEEECCCCCEEEecCCEEEECCCCC
Confidence 344567888999999999999998875 2 24443212455666 99999998753
No 250
>PRK06753 hypothetical protein; Provisional
Probab=82.75 E-value=6.2 Score=34.64 Aligned_cols=48 Identities=8% Similarity=0.074 Sum_probs=36.5
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-HhhhC
Q 026733 61 GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (234)
Q Consensus 61 Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~Ll 117 (234)
+.+|+++++|++|+.++ + + +.|.+ ++|+.+.+|.||.|-..++ +++.+
T Consensus 110 ~~~i~~~~~v~~i~~~~---~--~-v~v~~---~~g~~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 110 EDAIFTGKEVTKIENET---D--K-VTIHF---ADGESEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred CceEEECCEEEEEEecC---C--c-EEEEE---CCCCEEecCEEEECCCcchHHHHHh
Confidence 46899999999998665 3 2 34555 4788899999999988764 66655
No 251
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=82.64 E-value=5 Score=36.96 Aligned_cols=57 Identities=5% Similarity=-0.136 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHCCcE--EEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGR--FHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~--i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
.+.+-|.+..+..|.+ |+++++|++|...+ + -+.|.+.+ .++. ...+|+||.|....
T Consensus 112 ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~---~---~w~V~~~~-~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 112 EVLAYLQDFAREFKIEEMVRFETEVVRVEPVD---G---KWRVQSKN-SGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHHcCCcceEEecCEEEEEeecC---C---eEEEEEEc-CCCceEEEEcCEEEEeccCC
Confidence 5677888888899987 99999999998865 3 35565542 1222 45799999998753
No 252
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=82.37 E-value=2.9 Score=36.80 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHCC------cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKG------GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~G------g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
.|+.+|...+++.- ++|.++++|..|..++ | +|.||+.-+ .+|+ .+.+|+||++..-
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~---g--kVsgVeymd-~sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILRNN---G--KVSGVEYMD-ASGEKSKIIGDAVVLATGG 204 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC---C--eEEEEEEEc-CCCCccceecCceEEecCC
Confidence 47778887777654 6999999999999665 6 899998763 2333 5668988888663
No 253
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=81.94 E-value=5.5 Score=35.94 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=35.3
Q ss_pred HHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEe--cCEEEEcCCh
Q 026733 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQ--ADAYVAACDV 110 (234)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~--aD~VV~a~~~ 110 (234)
.+.+++.|++++++++|++|..++ + .|.+....+++.+. +|++|.|+..
T Consensus 51 ~~~~~~~gv~~~~~~~V~~id~~~---~-----~v~~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 51 EVFIKKRGIDVKTNHEVIEVNDER---Q-----TVVVRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred HHHHHhcCCeEEecCEEEEEECCC---C-----EEEEEECCCCCEEecCCCEEEECCCC
Confidence 345588999999999999998765 2 24443222355677 9999999875
No 254
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.70 E-value=6.4 Score=39.42 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHC----CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDK----GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~----Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
..+...|.+.+++. ++++..++.+.++..++ | ++.||...+..+|+ .+.|+.||+|+.-
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 203 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG---G--RAVGAAALNTRTGEFVTVGAKAVILATGP 203 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC---C--EEEEEEEEecCCCcEEEEECCEEEECCCc
Confidence 35677788887765 46777777778888765 6 89998754323554 4789999999773
No 255
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=81.42 E-value=3.3 Score=32.66 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceE----EEEEEeecCCCeEEecCEEEEcCChh
Q 026733 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYV----KGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~----~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+...+++++++++|.+|.... + ++ ..+.....+++..+.+|++|.|+...
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~---~--~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES---K--RVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST---T--EEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccc---c--ccccCcccceeeccCCceEecCCeeeecCccc
Confidence 55666688999999999999998876 3 32 12222223467789999999998854
No 256
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=81.08 E-value=2.8 Score=36.82 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=39.5
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+..++.+.+++.|++++.+ +|++|..++ + .|.+ .+|+.+.+|++|.|+...
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~~---~-----~V~~---~~g~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPDR---R-----KVLL---ANRPPLSYDVLSLDVGST 106 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEeccc---C-----EEEE---CCCCcccccEEEEccCCC
Confidence 4556778888899999875 899998875 2 3556 378889999999998753
No 257
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.85 E-value=6.7 Score=36.08 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=42.2
Q ss_pred cccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec-CCCeEEecCEEEEcCChh
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-TDKKVVQADAYVAACDVP 111 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~-~~g~~~~aD~VV~a~~~~ 111 (234)
...+.+.+.+.++++ ++++++++|++|..++ + . ..+.+... ++++.+++|.||.++...
T Consensus 214 d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~---~--~-~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 214 DKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE---D--G-IYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred CHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC---C--E-EEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 345677888889888 9999999999998765 2 2 23444311 113568999999998864
No 258
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=80.17 E-value=8.1 Score=36.41 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee---------------cCCCeEEecCEEEEcCChh
Q 026733 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---------------ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~---------------~~~g~~~~aD~VV~a~~~~ 111 (234)
.+..++.|++|++++.+.+|.-+++ + + .+|++.. .++...+++|.||.++...
T Consensus 312 ~~~a~~~GVki~~~~~~~~i~~~~~--~--~-~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 312 IEEALREGVEINWLRTPVEIEGDEN--G--A-TGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred HHHHHHcCCEEEecCCcEEEEcCCC--C--E-EEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 3445678999999999999976652 3 3 3654321 0112478999999998853
No 259
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=80.13 E-value=6.1 Score=36.02 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=40.9
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEe-ecCCCeEEecCEEEEcCChh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-KATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~-~~~~g~~~~aD~VV~a~~~~ 111 (234)
..+.+.+.+.++++ ++|+++++|++|..++ + .++.+. ..++++.+++|.||.++...
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~---~----~~v~~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSG---D----EKVEELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC---C----ceEEEEEcCCceEEEEeCEEEEccCCc
Confidence 35677888899999 9999999999997654 1 123321 11244678999999997753
No 260
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=79.19 E-value=6.4 Score=35.03 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+-+.+.+.++ .++.++++++|++|...++ + ..|.+ .+|+.+.|+.||-+.++.
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~--~----~~v~~---~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGD--G----VLVVL---ADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCc--e----EEEEE---CCCCEEEeeEEEECCCcc
Confidence 46777888888 6778999999999988862 2 34555 488899999999997754
No 261
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=78.86 E-value=8.6 Score=37.16 Aligned_cols=60 Identities=17% Similarity=0.051 Sum_probs=39.4
Q ss_pred cchHHHHHHH-HHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec--C--CC--------eEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYI-TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--T--DK--------KVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l-~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~--~--~g--------~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.+ +++|++|+++++|++|.-+++ + +...+.+.+. + ++ +.+++|.||.++...
T Consensus 354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~--~--~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG--N--QPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 4566666654 679999999999999986542 2 2223333210 0 11 378999999998854
No 262
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=78.44 E-value=8.8 Score=34.25 Aligned_cols=64 Identities=6% Similarity=-0.049 Sum_probs=44.9
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh-hHhhhCCC
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP-GIKRLLPS 119 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~-~~~~Ll~~ 119 (234)
+...|.+.+.+.|++++++++++++.-.++ . -.+|.+. .+|+ .+++|.||-|-... .+++.++.
T Consensus 105 l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~---~~~V~~~--~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 105 VTRDLMEAREAAGLTTVYDADDVRLHDLAG--D---RPYVTFE--RDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHhcCCeEEEeeeeEEEEecCC--C---ccEEEEE--ECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 456677878888999999999988865321 1 2356663 2554 68899999987775 47777654
No 263
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=78.19 E-value=2.2 Score=38.73 Aligned_cols=55 Identities=18% Similarity=0.062 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
+.|.+--.+.+++.|+.|+-|..|+.+....+ + .-+.+ .||..+..|.||.++..
T Consensus 393 eyls~wt~ekir~~GV~V~pna~v~sv~~~~~--n----l~lkL---~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK--N----LVLKL---SDGSELRTDLVVVAVGE 447 (659)
T ss_pred HHHHHHHHHHHHhcCceeccchhhhhhhhhcc--c----eEEEe---cCCCeeeeeeEEEEecC
Confidence 34555667778999999999999999988762 2 23556 49999999999999774
No 264
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=78.13 E-value=4.2 Score=40.45 Aligned_cols=49 Identities=10% Similarity=-0.001 Sum_probs=38.4
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
...+++++.|++++++++|.+|..+. + -|.+ .+|+.+.+|++|.|+...
T Consensus 64 ~~~~~~~~~gI~~~~g~~V~~Id~~~------~--~V~~---~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 64 VREGFYEKHGIKVLVGERAITINRQE------K--VIHS---SAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CCHHHHHhCCCEEEcCCEEEEEeCCC------c--EEEE---CCCcEEECCEEEECCCCC
Confidence 34567788999999999999997764 2 2444 378889999999998754
No 265
>PRK11445 putative oxidoreductase; Provisional
Probab=77.84 E-value=11 Score=32.96 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChhh-HhhhC
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLL 117 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~-~~~Ll 117 (234)
+.|.+ ..+.|++++.+++|+++..+++ + +.|.+. .+|+ .+.+|.||.|....+ +++.+
T Consensus 103 ~~L~~-~~~~gv~v~~~~~v~~i~~~~~--~----~~v~~~--~~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 103 LWLKS-LIPASVEVYHNSLCRKIWREDD--G----YHVIFR--ADGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred HHHHH-HHhcCCEEEcCCEEEEEEEcCC--E----EEEEEe--cCCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 33444 3467899999999999987752 2 335442 2453 688999999988753 55544
No 266
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=76.48 E-value=12 Score=31.26 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=46.0
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEe-e--cC-----CCeEEecCEEEEcCChhh
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-K--AT-----DKKVVQADAYVAACDVPG 112 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~-~--~~-----~g~~~~aD~VV~a~~~~~ 112 (234)
+...|+....+.|.+|..++.|+.+.+.++ . +|.||.+. + +. |=-.++|++||.++.+.+
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~--~--rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDD--P--RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecC--C--ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 466777777889999999999999999874 3 68898764 1 11 223578999999998764
No 267
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=75.85 E-value=5.3 Score=35.71 Aligned_cols=84 Identities=18% Similarity=0.081 Sum_probs=59.5
Q ss_pred ccccHHHHHHHHHHHhcCCc---cceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEe
Q 026733 15 DNISARCMLTIFALFATKTE---ASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS 91 (234)
Q Consensus 15 ~~~SA~~~~~~l~~~~~~~~---~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~ 91 (234)
-+..++-....+.+++++-+ .++..||+-+++| |++..++.-.-.||++.+|+++.+|...+ .|.+|..
T Consensus 195 l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk------~v~~v~~- 266 (434)
T COG5044 195 LDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETK------DVETVDK- 266 (434)
T ss_pred ccCCchHHHHHHHHHHHhhcccCCCcceeeccCchh-hhHHHHHhhhccCceeecCcchhhhcccc------ceeeeec-
Confidence 34455555555555443322 3468899888885 99999999999999999999999997764 2334433
Q ss_pred ecCCCeEEecCEEEEcCC
Q 026733 92 KATDKKVVQADAYVAACD 109 (234)
Q Consensus 92 ~~~~g~~~~aD~VV~a~~ 109 (234)
++.+..|-.||+...
T Consensus 267 ---~~~~~ka~KiI~~~~ 281 (434)
T COG5044 267 ---GSLTQKAGKIISSPT 281 (434)
T ss_pred ---CcceeecCcccCCcc
Confidence 566777888887644
No 268
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=75.76 E-value=4.6 Score=36.34 Aligned_cols=68 Identities=18% Similarity=0.075 Sum_probs=44.0
Q ss_pred CCCcccccHHHHHHHHHHHhcCCccce--eeecCCCCc--ccchHHHHHHHHHCCcEEEcCceeeEEEeccC
Q 026733 11 FIDCDNISARCMLTIFALFATKTEASL--LRMLKGSPD--VYLSGPIRKYITDKGGRFHLRWGCREILYDKA 78 (234)
Q Consensus 11 ~~~~~~~SA~~~~~~l~~~~~~~~~~~--~g~~~g~~~--~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~ 78 (234)
|+.-.=-||-.+...+-+|..+-++.+ -++..-.+. ++++.||..+|+++|+.+.+++.|+.|.++..
T Consensus 187 FAFekWhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t 258 (587)
T COG4716 187 FAFEKWHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDDT 258 (587)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHHHcCCceEeccEEeeeeeccC
Confidence 333334455555554455554433331 112222222 47899999999999999999999999999863
No 269
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.59 E-value=6.6 Score=35.02 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=48.9
Q ss_pred CCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh-hhHhhh
Q 026733 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV-PGIKRL 116 (234)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~-~~~~~L 116 (234)
++.+.+.+-+.+.++.+|+++|.++.++++....+ | -...+ . ..|....+|.++.|+.- +..+.|
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~--g--~~~~i-~---~~~~i~~vd~llwAiGR~Pntk~L 292 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD--G--LELVI-T---SHGTIEDVDTLLWAIGRKPNTKGL 292 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCC--C--ceEEE-E---eccccccccEEEEEecCCCCcccc
Confidence 56678899999999999999999999999988763 4 22222 2 36766679999999874 344443
No 270
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=75.58 E-value=13 Score=32.95 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-----cCCCeEEecCEEEEcCChh-hHhhhC
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----ATDKKVVQADAYVAACDVP-GIKRLL 117 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-----~~~g~~~~aD~VV~a~~~~-~~~~Ll 117 (234)
.+-+.|.+...+.|++++.+ .|++|..++ + . +.|.+.. .+...++.||.||-|-... .+.+.+
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~---~--~-~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~l 161 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDR---D--G-VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKEL 161 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcC---C--e-EEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHc
Confidence 34456778888899999765 699987765 3 2 3455532 0112478999999998865 466654
No 271
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=73.73 E-value=7.1 Score=36.74 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=36.7
Q ss_pred HHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--e-EEecCEEEEcCChh
Q 026733 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--K-VVQADAYVAACDVP 111 (234)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~-~~~aD~VV~a~~~~ 111 (234)
.++..+.+|.+++.|++|.+++ + ++++|++.....+ + .+.++.||+++...
T Consensus 212 a~~~~nl~v~t~a~v~ri~~~~---~--r~~gv~~~~~~~~~~~~~~a~~~viL~AGai 265 (542)
T COG2303 212 ALKRPNLTLLTGARVRRILLEG---D--RAVGVEVEIGDGGTIETAVAAREVVLAAGAI 265 (542)
T ss_pred HhcCCceEEecCCEEEEEEEEC---C--eeEEEEEEeCCCCceEEEecCceEEEecccc
Confidence 3444458999999999999998 4 7888888642222 2 34688888887743
No 272
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=73.14 E-value=13 Score=32.28 Aligned_cols=64 Identities=9% Similarity=-0.043 Sum_probs=47.7
Q ss_pred eeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
+|++.+.....|.+.+.+..+.-|.++.. ..|.++...+ ....|.+ ++|+ +.+++||.|+....
T Consensus 52 pg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~------~~F~v~t---~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 52 PGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG------GPFKVKT---DKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred CCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC------ceEEEEE---CCCe-EEEeEEEECcCCcc
Confidence 55556556667899999999999999888 7777777664 1344554 3565 99999999988754
No 273
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=72.31 E-value=20 Score=29.77 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=43.1
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee---cCCC-----eEEecCEEEEcCChhh
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---ATDK-----KVVQADAYVAACDVPG 112 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~---~~~g-----~~~~aD~VV~a~~~~~ 112 (234)
+...|+....+.|++|+..+.|+.+.+.++ + ||.||.+.- +..| -.+++..||.++.+++
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~--~--rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVRED--D--RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECS--C--EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcC--C--eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 455666666679999999999999999873 5 899987741 1122 3688999999987763
No 274
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=70.86 E-value=19 Score=36.35 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=36.1
Q ss_pred HHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cC--------CC--eEEecCEEEEcCChh
Q 026733 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT--------DK--KVVQADAYVAACDVP 111 (234)
Q Consensus 57 l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~------~~--------~g--~~~~aD~VV~a~~~~ 111 (234)
..+.|+++++++.+++|.-+++ ++ +++++++.. .. +| ..+++|.||.|+...
T Consensus 494 a~eeGV~~~~~~~p~~i~~d~~-~~--~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 494 ALEEGINLAVLRAPREFIGDDH-TH--FVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred HHHCCCEEEeCcceEEEEecCC-CC--EEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 4578999999999999976532 13 677765421 01 12 468999999998853
No 275
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=70.38 E-value=15 Score=33.42 Aligned_cols=48 Identities=6% Similarity=0.007 Sum_probs=33.0
Q ss_pred HHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
..++.|++++++++|++|..++ + .|.+....+++ .+.+|++|.|+...
T Consensus 67 ~~~~~~i~v~~~~~V~~Id~~~---~-----~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 67 FYDRKQITVKTYHEVIAINDER---Q-----TVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred HHHhCCCEEEeCCEEEEEECCC---C-----EEEEEECCCCcEEeeecCEEEECCCCC
Confidence 3466899999999999998875 2 24443211222 46799999997743
No 276
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=69.18 E-value=29 Score=33.35 Aligned_cols=67 Identities=7% Similarity=0.121 Sum_probs=45.5
Q ss_pred chHHHHHHHHHCCc--EEEcCceeeEEEeccCCCCcceEEEEEEeec---CCC--eEEecCEEEEcCChh-hHhhhCC
Q 026733 49 LSGPIRKYITDKGG--RFHLRWGCREILYDKAANAETYVKGLAMSKA---TDK--KVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~Gg--~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~---~~g--~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
+-+.|.+.+++.|+ +++.+++|++++.+++ ++ .-+.|.+... .+| +++.||+||-+=..+ .+++.+.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~-~~--~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEE-GE--YPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCC-CC--CCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 45667788888875 7899999999988742 11 1133445321 134 688999999997765 5777764
No 277
>PLN02985 squalene monooxygenase
Probab=68.30 E-value=32 Score=32.18 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh-hHhhhCC
Q 026733 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
.+.+.|.+.+++. |++++.+ .|.++..++ + ++.+|++.. .+|+ .+.||.||.|-... .+++.+.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~---~--~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK---G--VIKGVTYKN-SAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC---C--EEEEEEEEc-CCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 3567777777776 5888866 577776554 4 677887642 2454 35699999998765 4777654
No 278
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=68.20 E-value=11 Score=34.70 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+...--++.++.|.++++++.|+++.++. + .|.+ ++|+.+..|..|+|+..
T Consensus 128 ~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~---K-----~l~~---~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 128 GLAKRTPEFYKEKGIELILGTSVVKADLAS---K-----TLVL---GNGETLKYSKLIIATGS 179 (478)
T ss_pred cccccChhhHhhcCceEEEcceeEEeeccc---c-----EEEe---CCCceeecceEEEeecC
Confidence 344555668899999999999999999986 2 4667 59999999999999776
No 279
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=67.77 E-value=13 Score=32.77 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=28.7
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEeec--CCCeEEecCEEEEcCCh
Q 026733 62 GRFHLRWGCREILYDKAANAETYVKGLAMSKA--TDKKVVQADAYVAACDV 110 (234)
Q Consensus 62 g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~--~~g~~~~aD~VV~a~~~ 110 (234)
.+|+.+++|+.+...++ | + +.+.+.+. +....+++|+||+|+..
T Consensus 294 ~~l~~~~~v~~~~~~~~--~--~-~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGD--G--G-VRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEEETTEEEEEEEEES---S--S-EEEEEEETTT--EEEEEESEEEE---E
T ss_pred eEEeCCCEEEEEEECCC--C--E-EEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 68999999999999873 3 2 44555532 23356789999999864
No 280
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=65.31 E-value=23 Score=32.48 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=42.9
Q ss_pred chHHHHHHHHHCCc--EEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeE--EecCEEEEcCCh
Q 026733 49 LSGPIRKYITDKGG--RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDV 110 (234)
Q Consensus 49 l~~~l~~~l~~~Gg--~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~--~~aD~VV~a~~~ 110 (234)
+.+-+..++++.|. +|+.+++|+.+..+.+ + +.+-|.+. +|.. +.+|.||+|...
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~--~--~~w~V~~~---~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDED--T--KRWTVTTS---DGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCC--C--CeEEEEEc---CCCeeeEecCEEEEeecC
Confidence 67788899998886 6889999999888874 4 56777764 4433 569999999876
No 281
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=64.93 E-value=7.6 Score=36.53 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+-..|.+.|+..-.=-..-..|+.|.++++ . +|+||.+. +|..+.|++||+++..
T Consensus 101 ~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~--~--~v~GV~t~---~G~~~~a~aVVlTTGT 156 (621)
T COG0445 101 LYRRAMKNELENQPNLHLLQGEVEDLIVEEG--Q--RVVGVVTA---DGPEFHAKAVVLTTGT 156 (621)
T ss_pred HHHHHHHHHHhcCCCceehHhhhHHHhhcCC--C--eEEEEEeC---CCCeeecCEEEEeecc
Confidence 4456677777776654556677889998763 3 59999884 9999999999999874
No 282
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=64.67 E-value=40 Score=30.17 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=41.7
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec------CCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA------TDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~------~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
+-+.|.+...+.|++++.++ +..+....+ .+ ..++|++... +.+..+.||.||-|-... .+.+.+.
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~-~~--~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g 167 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGL-VTKLSLPAD-AD--DPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEID 167 (398)
T ss_pred HHHHHHHHHHHCCcEEEcce-EEEEEeccC-CC--ceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhC
Confidence 34457888889999998886 777754221 02 2445554311 123478999999998875 4665543
No 283
>PLN02785 Protein HOTHEAD
Probab=64.26 E-value=20 Score=34.22 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEE-------ecCEEEEcCCh
Q 026733 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVV-------QADAYVAACDV 110 (234)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~-------~aD~VV~a~~~ 110 (234)
+.......+.+|++++.|++|.++++ ++.++++||++.+. +|... ....||+++..
T Consensus 226 l~~~~~~~nl~Vl~~a~V~rIl~~~~-~~~~ra~GV~~~~~-~g~~~~~~~~~~~~~eVILsAGa 288 (587)
T PLN02785 226 LLAAGNPNKLRVLLHATVQKIVFDTS-GKRPRATGVIFKDE-NGNQHQAFLSNNKGSEIILSAGA 288 (587)
T ss_pred HHhhcCCCCeEEEeCCEEEEEEEcCC-CCCceEEEEEEEEC-CCceEEEEeecccCceEEecccc
Confidence 44444556799999999999999752 11127999998532 34322 22456666553
No 284
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=63.71 E-value=26 Score=33.06 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.+++.|++++ +++|++|..++ +...|.. .+| .+.+|.+|.|+...
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~------~~~~V~~---~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFDG------DIKTIKT---ARG-DYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEecC------CEEEEEe---cCC-EEEEeEEEECCCCc
Confidence 467778888889999985 78899998764 3344554 244 57899999998753
No 285
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=63.27 E-value=38 Score=31.09 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=42.0
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec------CCCeEEecCEEEEcCChh-hHhhhCC
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA------TDKKVVQADAYVAACDVP-GIKRLLP 118 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~------~~g~~~~aD~VV~a~~~~-~~~~Ll~ 118 (234)
+-+.|.+..++.|++++.+ .|++|..+++ ++ ..+.|.+... +++..+.||.||-|-... .+.+.+.
T Consensus 134 ~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~-~~--~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg 206 (450)
T PLN00093 134 LDSFLRERAQSNGATLING-LFTRIDVPKD-PN--GPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDID 206 (450)
T ss_pred HHHHHHHHHHHCCCEEEec-eEEEEEeccC-CC--CcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhC
Confidence 4456888888999999876 4888876421 01 1234544321 123578999999998865 4666553
No 286
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=63.09 E-value=25 Score=25.10 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=28.4
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecC
Q 026733 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD 102 (234)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD 102 (234)
|++.++++|+.+ .|.++...++ +. -|+.|++. ||+.+.+|
T Consensus 2 mVklie~~G~~F----~V~dm~~~dg-~~--~V~~ie~~---dGti~~~~ 41 (102)
T PF03197_consen 2 MVKLIEENGGWF----EVKDMSSIDG-DY--FVEKIEMA---DGTIYNSD 41 (102)
T ss_pred HhHHHHHcCCcE----EEeeeEeccc-ce--eEEEEEec---CCcEEcCC
Confidence 789999999987 5677776542 22 47778884 88776644
No 287
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=61.79 E-value=96 Score=29.53 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=64.3
Q ss_pred eeeecCCCCcc-cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeE--EecCEEEEcCCh--h
Q 026733 37 LLRMLKGSPDV-YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDV--P 111 (234)
Q Consensus 37 ~~g~~~g~~~~-~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~--~~aD~VV~a~~~--~ 111 (234)
.+-|..|...+ .+.-.++=-.-++|..+.-..+|.++..+++ | ++.|++..+...|++ +.|-.||-|+.+ .
T Consensus 213 a~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~--~--kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 213 AMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD--G--KVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred EEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC--C--ceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 35666666554 3444455555679999999999999999984 7 888888775445654 558888888665 3
Q ss_pred hHhhhCCCcccCchHHHHhhcCCCCcEEEEEEEecC
Q 026733 112 GIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNG 147 (234)
Q Consensus 112 ~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~d~ 147 (234)
.++++-.+..++. =+|...||+-+-+
T Consensus 289 sIr~Mdd~~~~~i----------~~pSsGvHIVlP~ 314 (680)
T KOG0042|consen 289 SIRKMDDEDAKPI----------CVPSSGVHIVLPG 314 (680)
T ss_pred HHHhhcccccCce----------eccCCceeEEccc
Confidence 5666655422111 1255667776665
No 288
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=60.60 E-value=23 Score=34.32 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=36.8
Q ss_pred CCc-EEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-Hhh-hCCC
Q 026733 60 KGG-RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR-LLPS 119 (234)
Q Consensus 60 ~Gg-~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~-Ll~~ 119 (234)
.|. .++.+++|++|..++ + +++ |.+ .+|+.+.+|.||.|-..++ +++ +++.
T Consensus 204 lg~~~i~~g~~V~~I~~~~---d--~Vt-V~~---~dG~ti~aDlVVGADG~~S~vR~~l~g~ 257 (668)
T PLN02927 204 VGEDVIRNESNVVDFEDSG---D--KVT-VVL---ENGQRYEGDLLVGADGIWSKVRNNLFGR 257 (668)
T ss_pred CCCCEEEcCCEEEEEEEeC---C--EEE-EEE---CCCCEEEcCEEEECCCCCcHHHHHhcCC
Confidence 444 478999999998776 3 444 655 4788899999999988764 555 5553
No 289
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=60.52 E-value=18 Score=35.33 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=44.3
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh-hHhhhCCCc
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLPSS 120 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~-~~~~Ll~~~ 120 (234)
++-.--++.+++|+++++|.+|..|..++ . .|.. +.|..+..|..|.|.... .+.. +|..
T Consensus 61 i~l~~~dwy~~~~i~L~~~~~v~~idr~~---k-----~V~t---~~g~~~~YDkLilATGS~pfi~P-iPG~ 121 (793)
T COG1251 61 ISLNRNDWYEENGITLYTGEKVIQIDRAN---K-----VVTT---DAGRTVSYDKLIIATGSYPFILP-IPGS 121 (793)
T ss_pred HhccchhhHHHcCcEEEcCCeeEEeccCc---c-----eEEc---cCCcEeecceeEEecCccccccC-CCCC
Confidence 44455678899999999999999998875 2 3444 489999999888887654 3333 6654
No 290
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.03 E-value=19 Score=32.69 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=34.1
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEecCEEEEcCChh
Q 026733 62 GRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 62 g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~--~~~g~~~~aD~VV~a~~~~ 111 (234)
+.++.+++|+.++-+++ | + ..+.+.. +++.++++.|+||+|+..+
T Consensus 293 v~l~~~~ev~~~~~~G~--g--~-~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 293 VRLLSLSEVQSVEPAGD--G--R-YRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred eeeccccceeeeecCCC--c--e-EEEEEeeccCCCceEEEeeEEEEecccc
Confidence 58899999999999884 6 4 4454443 2345678899999999875
No 291
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=59.55 E-value=28 Score=32.45 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=51.0
Q ss_pred eeecCCCCcccchHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC-CeEEecCEEEEcCC
Q 026733 38 LRMLKGSPDVYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD-KKVVQADAYVAACD 109 (234)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~-g~~~~aD~VV~a~~ 109 (234)
+-...+..+..+...|.+.+++ -+++|.-++.+.+|..+++ . .+.||.+....+ -..+.++.||+|..
T Consensus 124 IlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~--~--~~~Gv~~~~~~~~~~~~~a~~vVLATG 193 (518)
T COG0029 124 ILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG--I--GVAGVLVLNRNGELGTFRAKAVVLATG 193 (518)
T ss_pred EEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC--c--eEeEEEEecCCCeEEEEecCeEEEecC
Confidence 4445555666889999999887 7899999999999999973 2 355887753111 25678999999966
No 292
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=58.32 E-value=47 Score=32.04 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=33.2
Q ss_pred HHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec---C---------CC--eEEecCEEEEcCChh
Q 026733 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA---T---------DK--KVVQADAYVAACDVP 111 (234)
Q Consensus 57 l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~---~---------~g--~~~~aD~VV~a~~~~ 111 (234)
..+.|++|++++.+.+|.-+++ + .++..+.+... . +| ..+++|.||.++...
T Consensus 371 a~~eGV~i~~~~~~~~i~~~~~--~-~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 371 ALAEGVSLRELAAPVSIERSEG--G-LELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHHcCCcEEeccCcEEEEecCC--e-EEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 3568999999999999976542 2 01233333210 0 12 268899999998853
No 293
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=56.70 E-value=29 Score=31.34 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-------cCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-------ATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-------~~~g~~~~aD~VV~a~~~~ 111 (234)
.+..++.+.++..|+++. ..+|++|..++ + . |.+.. ..+|+.+.+|++|+|+...
T Consensus 63 ~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~---~--~---v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 63 SICEPVRPALAKLPNRYL-RAVVYDVDFEE---K--R---VKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred HhHHHHHHHhccCCeEEE-EEEEEEEEcCC---C--E---EEEecccccccccCCceEecCCEEEECCCcc
Confidence 355667777777888764 56999998876 2 2 33310 0256789999999998764
No 294
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=55.59 E-value=34 Score=31.09 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=34.1
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+.+.+.+++.|+++..+ +++.+..+ ++ .| . .+|+.+.+|+||.|+...
T Consensus 92 ~~~~~~~~l~~~gV~~~~g-~~~~v~~~-------~v-~v--~--~~g~~~~~d~lIiATGs~ 141 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEG-RARLVGPN-------TV-EV--L--QDGTTYTAKKILIAVGGR 141 (446)
T ss_pred HHHHHHHHHHhCCcEEEEE-EEEEecCC-------EE-EE--e--cCCeEEEcCEEEEecCCc
Confidence 4556677788899999877 66655322 11 22 2 267789999999998743
No 295
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=53.97 E-value=24 Score=31.42 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=30.6
Q ss_pred cchHHHHHHHHH---CC-cEEEcCceeeEEEeccCCCCcceEEEEE
Q 026733 48 YLSGPIRKYITD---KG-GRFHLRWGCREILYDKAANAETYVKGLA 89 (234)
Q Consensus 48 ~l~~~l~~~l~~---~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~ 89 (234)
.+.+++++.+++ .| +++++.++|.++...+ | +|+||+
T Consensus 150 gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~---g--rvtGv~ 190 (552)
T COG3573 150 GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG---G--RVTGVR 190 (552)
T ss_pred chhhHHHHHHHHHHhCCceEEEeeeeccceEeeC---C--eEeeec
Confidence 467888888877 55 7999999999999997 5 888865
No 296
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=53.62 E-value=50 Score=31.11 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=32.9
Q ss_pred HHHHHH-HHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEE----ecCE----EEEcCCh
Q 026733 52 PIRKYI-TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVV----QADA----YVAACDV 110 (234)
Q Consensus 52 ~l~~~l-~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~----~aD~----VV~a~~~ 110 (234)
.+.+.+ +++|++|+++++|++|.-+ + ++..+.+....+|+.. .+|. ||.++..
T Consensus 183 ~~~~~~~~~~gV~i~~~~~V~~i~~~----~--~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~ 244 (555)
T TIGR03143 183 LIAEKVKNHPKIEVKFNTELKEATGD----D--GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY 244 (555)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEcC----C--cEEEEEEEECCCCCEEEEeccccccceEEEEEeCC
Confidence 344444 4469999999999999743 3 4555544322345432 2665 8888764
No 297
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=53.27 E-value=43 Score=29.08 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=40.2
Q ss_pred hHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeec-CCCeEEecCEEEEcCChh
Q 026733 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKA-TDKKVVQADAYVAACDVP 111 (234)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~-~~g~~~~aD~VV~a~~~~ 111 (234)
-+.+++.++++ .++++++++|++|.=++ +.+|++.+. +..+.+.+|.|..++...
T Consensus 181 ~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-------v~~v~l~~~~~~~~~~~~~gvf~~iG~~ 237 (305)
T COG0492 181 EEILVERLKKNVKIEVLTNTVVKEILGDD-------VEGVVLKNVKGEEKELPVDGVFIAIGHL 237 (305)
T ss_pred CHHHHHHHHhcCCeEEEeCCceeEEecCc-------cceEEEEecCCceEEEEeceEEEecCCC
Confidence 57888888888 89999999999996542 456777532 122367899988887653
No 298
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=53.25 E-value=45 Score=30.86 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHHHHCCcE-EEcCceeeEEEeccCCCCcceEEEEEEee-----cCCC-----------eEEecCEEEEcCCh
Q 026733 55 KYITDKGGR-FHLRWGCREILYDKAANAETYVKGLAMSK-----ATDK-----------KVVQADAYVAACDV 110 (234)
Q Consensus 55 ~~l~~~Gg~-i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-----~~~g-----------~~~~aD~VV~a~~~ 110 (234)
+.++..|++ +++++.+.+|.-+++ | ++++|++.. ..+| +.+++|.||.++..
T Consensus 344 e~~~~~gv~~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 344 EAAAHYGRDPREYSILTKEFIGDDE--G--KVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred hhhhhcCccceEEecCcEEEEEcCC--C--eEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 333445664 467889999876542 4 788876421 1123 36899999999875
No 299
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=53.13 E-value=21 Score=33.52 Aligned_cols=61 Identities=16% Similarity=0.039 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHCCc--EEEcCceeeEEEeccCCCCc-ceEEEEEEeecCCCe--EEecCEEEEcCChhh
Q 026733 48 YLSGPIRKYITDKGG--RFHLRWGCREILYDKAANAE-TYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg--~i~~~~~V~~i~~~~~~~~~-~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~ 112 (234)
.+.+=|..+.+..|. .|++||+|++++..++ .. ..-+.|... .+|+ +..+|+||.+.....
T Consensus 85 ~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d--~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 85 EVLEYLESYAEHFGLRKHIRFNTEVVSVERDPD--FSATGKWEVTTE--NDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHHTTGGGGEETSEEEEEEEEETT--TT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSS
T ss_pred HHHHHHHHHHhhhCCcceEEEccEEeEeeeccc--cCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcC
Confidence 467777788887775 6999999999998642 10 012455543 3453 345999999877643
No 300
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=51.51 E-value=26 Score=30.86 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-cCCCeEEecCEEEEcCCh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-ATDKKVVQADAYVAACDV 110 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~-~~~g~~~~aD~VV~a~~~ 110 (234)
.+.+=+.-..++.+..++++++|++|....+ ++. ....|.+.+ .++++.+.|++||+++..
T Consensus 96 ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~-~~~-~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 96 EFNDYLRWVAEQLDNQVRYGSEVTSIEPDDD-GDE-DLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHHHHHHHHHCCGTTTEEESEEEEEEEEEEE-TTE-EEEEEEEEETTS-EEEEEESEEEE----
T ss_pred HHHHHHHHHHHhCCCceEECCEEEEEEEecC-CCc-cEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 3445554455556655999999999999863 110 245565532 124578899999999773
No 301
>PRK10262 thioredoxin reductase; Provisional
Probab=51.17 E-value=71 Score=27.39 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+.+...+.+++.+ +|++|...+ + . ..+.. +...+.+|.||+|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~---~--~-~~v~~----~~~~~~~d~vilAtG~~ 116 (321)
T PRK10262 64 LLMERMHEHATKFETEIIFD-HINKVDLQN---R--P-FRLTG----DSGEYTCDALIIATGAS 116 (321)
T ss_pred HHHHHHHHHHHHCCCEEEee-EEEEEEecC---C--e-EEEEe----cCCEEEECEEEECCCCC
Confidence 35677778888888888776 577787764 3 2 22322 33468899999998754
No 302
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=49.48 E-value=51 Score=33.59 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecC---------------------------CCeEEecCEEEEcC
Q 026733 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT---------------------------DKKVVQADAYVAAC 108 (234)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~---------------------------~g~~~~aD~VV~a~ 108 (234)
...+.|++++.++...+|..+++ | ++++|++.... ....++||.||.|+
T Consensus 649 ~A~eEGV~f~~~~~P~~i~~d~~--g--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~ 724 (1028)
T PRK06567 649 YALALGVDFKENMQPLRINVDKY--G--HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAI 724 (1028)
T ss_pred HHHHcCcEEEecCCcEEEEecCC--C--eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEec
Confidence 34779999999999999998753 6 89988775211 11467899999997
Q ss_pred Ch
Q 026733 109 DV 110 (234)
Q Consensus 109 ~~ 110 (234)
..
T Consensus 725 G~ 726 (1028)
T PRK06567 725 GI 726 (1028)
T ss_pred cc
Confidence 73
No 303
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=47.52 E-value=39 Score=30.02 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=28.8
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 61 GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 61 Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+..|+++++|+++ +. + +|.+. +|+++.||.||-+.++.
T Consensus 100 ~~~i~~~~~V~~v--~~---~-----~v~l~---dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 100 PEGVILGRKAVGL--DA---D-----GVDLA---PGTRINARSVIDCRGFK 137 (370)
T ss_pred cccEEecCEEEEE--eC---C-----EEEEC---CCCEEEeeEEEECCCCC
Confidence 4348889999988 33 2 25563 88899999999998865
No 304
>PRK06116 glutathione reductase; Validated
Probab=45.28 E-value=45 Score=30.29 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=31.2
Q ss_pred hHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+.+.+.+++.|++++.++ ++.+ +. . .|++ +|+.+.+|++|.|+..
T Consensus 96 ~~~~~~~l~~~gv~~~~g~-~~~v--~~---~-----~v~~----~g~~~~~d~lViATGs 141 (450)
T PRK06116 96 HGSYRNGLENNGVDLIEGF-ARFV--DA---H-----TVEV----NGERYTADHILIATGG 141 (450)
T ss_pred HHHHHHHHHhCCCEEEEEE-EEEc--cC---C-----EEEE----CCEEEEeCEEEEecCC
Confidence 3445556777899998885 4444 22 2 2445 5678899999999864
No 305
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=44.53 E-value=75 Score=32.51 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEE-------------eecCCCeEEecCEEEEcCChh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAM-------------SKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~-------------~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+.+. .+.|++++.++.+.+|..+ | +++...+ ...+++..+++|.||.+++..
T Consensus 712 eEle~A-leeGVe~~~~~~p~~I~~d----G--~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 712 EEYEEA-LEDGVEFKELLNPESFDAD----G--TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HHHHHH-HHcCCEEEeCCceEEEEcC----C--cEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 334444 4589999999999998532 2 3321111 011345689999999998864
No 306
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=44.07 E-value=58 Score=29.73 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=32.4
Q ss_pred hHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
.+.+.+.+++.|+++++++.+. .++ + .|.+ +|+.+.+|+||.|+..
T Consensus 94 ~~~~~~~l~~~gv~~~~g~~~~---~~~---~-----~v~v----~~~~~~~d~vIiAtGs 139 (450)
T TIGR01421 94 NGIYQKNLEKNKVDVIFGHARF---TKD---G-----TVEV----NGRDYTAPHILIATGG 139 (450)
T ss_pred HHHHHHHHHhCCCEEEEEEEEE---ccC---C-----EEEE----CCEEEEeCEEEEecCC
Confidence 3446667888999999998652 222 2 2444 6678899999999774
No 307
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=41.41 E-value=65 Score=29.33 Aligned_cols=50 Identities=8% Similarity=0.051 Sum_probs=31.4
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+.+.+++.|++++.++. +.+ +. . + ..|... .+++.+.+|++|.|+...
T Consensus 96 ~~~~~~~~~~gv~~~~g~~-~~~--~~---~--~-~~v~~~--~~~~~~~~d~lViAtGs~ 145 (462)
T PRK06416 96 GGVEGLLKKNKVDIIRGEA-KLV--DP---N--T-VRVMTE--DGEQTYTAKNIILATGSR 145 (462)
T ss_pred HHHHHHHHhCCCEEEEEEE-EEc--cC---C--E-EEEecC--CCcEEEEeCEEEEeCCCC
Confidence 3466677889999998853 333 32 1 1 223321 234678999999998643
No 308
>PLN02546 glutathione reductase
Probab=40.99 E-value=62 Score=30.67 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=31.1
Q ss_pred chHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
+.+.+.+.+++.|++++.+.. +.+ +. . .|.+ +|+.+.+|+||.|+..
T Consensus 180 l~~~~~~~l~~~gV~~i~G~a-~~v--d~---~-----~V~v----~G~~~~~D~LVIATGs 226 (558)
T PLN02546 180 LTGIYKNILKNAGVTLIEGRG-KIV--DP---H-----TVDV----DGKLYTARNILIAVGG 226 (558)
T ss_pred HHHHHHHHHHhCCcEEEEeEE-EEc--cC---C-----EEEE----CCEEEECCEEEEeCCC
Confidence 345566677888999887633 233 22 1 2444 6778899999999764
No 309
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=40.37 E-value=82 Score=28.86 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=33.1
Q ss_pred hHHHHHHHHHCCcEEEcCceeeEEE--eccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChh
Q 026733 50 SGPIRKYITDKGGRFHLRWGCREIL--YDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (234)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~--~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~ 111 (234)
.+.+.+.+++.|++++.++. +.+. .+. + + ..|.. .+|+ .+.+|+||.|+...
T Consensus 95 ~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~---~--~-v~V~~---~~g~~~~~~~d~lViATGs~ 150 (466)
T PRK07845 95 SADIRARLEREGVRVIAGRG-RLIDPGLGP---H--R-VKVTT---ADGGEETLDADVVLIATGAS 150 (466)
T ss_pred HHHHHHHHHHCCCEEEEEEE-EEeecccCC---C--E-EEEEe---CCCceEEEecCEEEEcCCCC
Confidence 34566778888999988864 3333 333 2 2 23433 2554 68999999998753
No 310
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=38.40 E-value=52 Score=29.48 Aligned_cols=65 Identities=8% Similarity=0.010 Sum_probs=46.3
Q ss_pred CCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEecCEEEEcCChhhH
Q 026733 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVPGI 113 (234)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~--~~~g~~~~aD~VV~a~~~~~~ 113 (234)
++.+.+++.+.+.++++|+++.-.+..++++..++ | + ..|.... ++++.....|.|+.|+.-...
T Consensus 235 GFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~--g--~-l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~ 301 (503)
T KOG4716|consen 235 GFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD--G--K-LRVFYKNTNTGEEGEEEYDTVLWAIGRKAL 301 (503)
T ss_pred cccHHHHHHHHHHHHHhCCceeecccceeeeeccC--C--c-EEEEeecccccccccchhhhhhhhhccccc
Confidence 55567899999999999999999988888887663 5 3 2333322 123334568999999887653
No 311
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=38.33 E-value=35 Score=34.57 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=25.3
Q ss_pred eeecCCCCcccchHHHHHHHHHCCcEEEcCcee
Q 026733 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGC 70 (234)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V 70 (234)
.|+|.--+...+++...+.+++.|++|++|+.|
T Consensus 347 yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 347 YGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred ccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence 455543444467888889999999999999877
No 312
>PTZ00367 squalene epoxidase; Provisional
Probab=38.05 E-value=1.2e+02 Score=28.84 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=41.9
Q ss_pred chHHHHHHH---HHCCcEEEcCceeeEEEeccCCC--CcceEEEEEEeecC----------------------CCeEEec
Q 026733 49 LSGPIRKYI---TDKGGRFHLRWGCREILYDKAAN--AETYVKGLAMSKAT----------------------DKKVVQA 101 (234)
Q Consensus 49 l~~~l~~~l---~~~Gg~i~~~~~V~~i~~~~~~~--~~~~~~~v~~~~~~----------------------~g~~~~a 101 (234)
+.+.|.+.+ ...|++++ ..+|+++..+++ + + ++.+|++...+ +|+++.|
T Consensus 133 ~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~-~~~~--~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~A 208 (567)
T PTZ00367 133 FVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGP-GFSE--RAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATA 208 (567)
T ss_pred HHHHHHHHHHhhcCCCcEEE-EeEEEEeccccC-ccCC--eeEEEEEecCCcccccccccccccccccccccccceEEEe
Confidence 445566655 34578886 457888866542 0 1 46777764322 2678999
Q ss_pred CEEEEcCChh-hHhhhC
Q 026733 102 DAYVAACDVP-GIKRLL 117 (234)
Q Consensus 102 D~VV~a~~~~-~~~~Ll 117 (234)
|.||.|=... .+++.+
T Consensus 209 dLvVgADG~~S~vR~~l 225 (567)
T PTZ00367 209 PLVVMCDGGMSKFKSRY 225 (567)
T ss_pred CEEEECCCcchHHHHHc
Confidence 9999887765 477655
No 313
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=37.42 E-value=43 Score=26.20 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC
Q 026733 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (234)
Q Consensus 17 ~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g 96 (234)
+.+...+.+|+++.-.-.|...-+...+. .+-.|++..|.++|.+|. -.+.... + + ..
T Consensus 18 cTp~aii~lL~~~~~~l~Gk~v~VvGrs~--~VG~Pla~lL~~~~atVt------~~h~~T~--~--------l----~~ 75 (160)
T PF02882_consen 18 CTPLAIIELLEYYGIDLEGKKVVVVGRSN--IVGKPLAMLLLNKGATVT------ICHSKTK--N--------L----QE 75 (160)
T ss_dssp HHHHHHHHHHHHTT-STTT-EEEEE-TTT--TTHHHHHHHHHHTT-EEE------EE-TTSS--S--------H----HH
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEEECCcC--CCChHHHHHHHhCCCeEE------eccCCCC--c--------c----cc
Confidence 45666777777654344455555565554 578999999999976552 2221110 0 0 11
Q ss_pred eEEecCEEEEcCChhhH
Q 026733 97 KVVQADAYVAACDVPGI 113 (234)
Q Consensus 97 ~~~~aD~VV~a~~~~~~ 113 (234)
....||.||++++.+.+
T Consensus 76 ~~~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 76 ITRRADIVVSAVGKPNL 92 (160)
T ss_dssp HHTTSSEEEE-SSSTT-
T ss_pred eeeeccEEeeeeccccc
Confidence 22359999999987543
No 314
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.14 E-value=69 Score=27.66 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=46.9
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
=|.+...+.+|+.+.-.-.|...-+...+. .+-.|++..|.++|..+ |+.|+-.+.... + + .
T Consensus 134 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~~~~--~AtVtvchs~T~--~--------l----~ 195 (287)
T PRK14181 134 PCTPAGIIELLKYYEIPLHGRHVAIVGRSN--IVGKPLAALLMQKHPDT--NATVTLLHSQSE--N--------L----T 195 (287)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHhCcCCC--CCEEEEeCCCCC--C--------H----H
Confidence 456677777777654333445555565555 67889999998885332 344443322110 0 1 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 196 ~~~~~ADIvV~AvG~p~ 212 (287)
T PRK14181 196 EILKTADIIIAAIGVPL 212 (287)
T ss_pred HHHhhCCEEEEccCCcC
Confidence 22346999999998764
No 315
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.98 E-value=78 Score=27.27 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.+...+.+|.++.-.-.|...-+...+. .+-.|++..|.++|.+|- -.+.... + + .
T Consensus 139 PcTp~aii~lL~~y~i~l~Gk~vvViGrS~--~VGkPla~lL~~~~ATVt------~chs~T~--d--------l----~ 196 (282)
T PRK14180 139 SCTPKGIMTMLREYGIKTEGAYAVVVGASN--VVGKPVSQLLLNAKATVT------TCHRFTT--D--------L----K 196 (282)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEE------EEcCCCC--C--------H----H
Confidence 456777777787654444455666666555 678999999998886652 2111100 0 1 1
Q ss_pred CeEEecCEEEEcCChhhH
Q 026733 96 KKVVQADAYVAACDVPGI 113 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~~ 113 (234)
...-.||.||+|++.+.+
T Consensus 197 ~~~k~ADIvIsAvGkp~~ 214 (282)
T PRK14180 197 SHTTKADILIVAVGKPNF 214 (282)
T ss_pred HHhhhcCEEEEccCCcCc
Confidence 123469999999997653
No 316
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.83 E-value=1.3e+02 Score=27.70 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=59.6
Q ss_pred CcccccHHHHHHHHHHHh---cCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEE
Q 026733 13 DCDNISARCMLTIFALFA---TKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLA 89 (234)
Q Consensus 13 ~~~~~SA~~~~~~l~~~~---~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~ 89 (234)
.....++--.+...+.|+ ++-+...+.||-=+-++ |.+.+.+...=.||=..++.+|+.|..+++ .. +++.+
T Consensus 250 ~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk~--s~-~~~~~- 324 (547)
T KOG4405|consen 250 SESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDKE--SL-DCKAI- 324 (547)
T ss_pred CcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeeccc--cc-chhhh-
Confidence 455577777777777664 23334478888666664 889999999999999999999999999873 10 11111
Q ss_pred EeecCCCeEEecCEEEEc
Q 026733 90 MSKATDKKVVQADAYVAA 107 (234)
Q Consensus 90 ~~~~~~g~~~~aD~VV~a 107 (234)
+. ..|..+.+.++|++
T Consensus 325 l~--s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 325 LD--SFGQRINAKNFVVS 340 (547)
T ss_pred Hh--hhcchhcceeeeec
Confidence 11 35666666666665
No 317
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.53 E-value=96 Score=26.80 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.+...+.++.++.-.-.|...-+...+. .+-.|++..|..+|.+|-.-+ ....+ + .
T Consensus 145 PcTp~av~~ll~~~~i~l~Gk~vvViGrs~--iVGkPla~lL~~~~atVtv~h----s~T~~------------l----~ 202 (287)
T PRK14176 145 PCTPHGVIRALEEYGVDIEGKNAVIVGHSN--VVGKPMAAMLLNRNATVSVCH----VFTDD------------L----K 202 (287)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCc--ccHHHHHHHHHHCCCEEEEEe----ccCCC------------H----H
Confidence 345666666777643233445555555444 578899999998886652211 11110 1 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|+..+.
T Consensus 203 ~~~~~ADIvv~AvG~p~ 219 (287)
T PRK14176 203 KYTLDADILVVATGVKH 219 (287)
T ss_pred HHHhhCCEEEEccCCcc
Confidence 22346999999988753
No 318
>PRK06370 mercuric reductase; Validated
Probab=32.32 E-value=1.2e+02 Score=27.71 Aligned_cols=45 Identities=4% Similarity=-0.006 Sum_probs=31.0
Q ss_pred HHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 52 PIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 52 ~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
.+.+.+++. |+++++++.+. .++ + .|.+ +|+.+.+|+||.|+...
T Consensus 99 ~~~~~~~~~~gv~v~~g~~~~---~~~---~-----~v~v----~~~~~~~d~lViATGs~ 144 (463)
T PRK06370 99 GSEQWLRGLEGVDVFRGHARF---ESP---N-----TVRV----GGETLRAKRIFINTGAR 144 (463)
T ss_pred hHHHHHhcCCCcEEEEEEEEE---ccC---C-----EEEE----CcEEEEeCEEEEcCCCC
Confidence 345566776 99999998762 232 2 2444 56778999999998753
No 319
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=32.07 E-value=95 Score=29.52 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCChhh
Q 026733 47 VYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (234)
Q Consensus 47 ~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~~~ 112 (234)
..+...|.+.+.+ .+.+|+-+..|.+|.++++ + .+.|+....-.+|+ .+.+++||.++.-..
T Consensus 138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG--G--GVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhheecCC--C--cEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 3567788888877 7779999999999999863 4 46776544323454 466889999986543
No 320
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=30.86 E-value=1.6e+02 Score=26.87 Aligned_cols=52 Identities=4% Similarity=-0.062 Sum_probs=31.8
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEec--cCCCCcceEEEEEEeecCCC--eEEecCEEEEcCCh
Q 026733 52 PIRKYITDKGGRFHLRWGCREILYD--KAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (234)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~--~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~ 110 (234)
...+.+++.|++++.+. ++.|..+ .+ ++ +-..|.+ .+| +.+.+|++|.|+..
T Consensus 97 ~~~~~~~~~gv~~~~g~-a~~i~~~~~~~-~~--~~~~v~~---~~g~~~~~~~d~lViATGs 152 (472)
T PRK05976 97 GVAALLKKGKIDVFHGI-GRILGPSIFSP-MP--GTVSVET---ETGENEMIIPENLLIATGS 152 (472)
T ss_pred HHHHHHHhCCCEEEEEE-EEEeCCCCCcC-Cc--eEEEEEe---CCCceEEEEcCEEEEeCCC
Confidence 34456678899999985 4555443 00 01 1233444 255 57899999999875
No 321
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.83 E-value=87 Score=26.99 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.++..+.+|+++.-.-.|...-+...+. .+-.|++..|.++|.+|-. .+..-. + + .
T Consensus 138 PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~--iVGkPla~lL~~~~atVt~------chs~T~--n--------l----~ 195 (282)
T PRK14166 138 PCTPLGVMKLLKAYEIDLEGKDAVIIGASN--IVGRPMATMLLNAGATVSV------CHIKTK--D--------L----S 195 (282)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEEE------eCCCCC--C--------H----H
Confidence 456777777777654334455555565555 6788999999888765531 111100 0 1 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 196 ~~~~~ADIvIsAvGkp~ 212 (282)
T PRK14166 196 LYTRQADLIIVAAGCVN 212 (282)
T ss_pred HHHhhCCEEEEcCCCcC
Confidence 22446999999999764
No 322
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.61 E-value=98 Score=26.71 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC
Q 026733 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (234)
Q Consensus 17 ~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g 96 (234)
|.+...+.+|+++.-.-.|....+...+. .+-.|++..|.++|.+|..-+ ... . .+ ..
T Consensus 140 cTp~aii~lL~~~~i~l~Gk~vvViGrs~--iVGkPla~lL~~~~atVt~~h------s~t---~-------~l----~~ 197 (285)
T PRK14189 140 CTPYGVMKMLESIGIPLRGAHAVVIGRSN--IVGKPMAMLLLQAGATVTICH------SKT---R-------DL----AA 197 (285)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEEECCCC--ccHHHHHHHHHHCCCEEEEec------CCC---C-------CH----HH
Confidence 45666777777654334455666665554 567899999998887764321 110 0 01 12
Q ss_pred eEEecCEEEEcCChh
Q 026733 97 KVVQADAYVAACDVP 111 (234)
Q Consensus 97 ~~~~aD~VV~a~~~~ 111 (234)
..-.||.||++++.+
T Consensus 198 ~~~~ADIVV~avG~~ 212 (285)
T PRK14189 198 HTRQADIVVAAVGKR 212 (285)
T ss_pred HhhhCCEEEEcCCCc
Confidence 234699999999954
No 323
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=29.88 E-value=1e+02 Score=26.99 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeec-CCCeEEecCEEEEcCChhhHhhhCC
Q 026733 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKA-TDKKVVQADAYVAACDVPGIKRLLP 118 (234)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~-~~g~~~~aD~VV~a~~~~~~~~Ll~ 118 (234)
.+...|....++.| +++.+|+ |.++..+. + |+.+|....+ ..+...+++.+|+++.|++-+ |+|
T Consensus 148 lFc~~i~sea~k~~~V~lv~Gk-v~ev~dEk---~--r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp 213 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFGK-VKEVSDEK---H--RINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLP 213 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEee-eEEeeccc---c--cccccchhhhcCceEEeeeeEEEEecCCCchh-hcc
Confidence 56788888888888 6777774 66776554 4 7777765421 124566788888888877543 444
No 324
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=29.17 E-value=1.2e+02 Score=20.86 Aligned_cols=34 Identities=9% Similarity=0.293 Sum_probs=21.5
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 026733 201 LQCVLTPGDPYMPLPNDEIIRRVAKQLYFHHPKV 234 (234)
Q Consensus 201 ~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~P~~ 234 (234)
+++++.....+-.-.-+.|.+.+.++|.+.||+.
T Consensus 3 VEi~~dK~~~lp~ga~~AL~~EL~kRl~~~fPd~ 36 (81)
T PRK10597 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDN 36 (81)
T ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCC
Confidence 4555543332222234778889999999999974
No 325
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=28.55 E-value=60 Score=25.47 Aligned_cols=46 Identities=7% Similarity=0.004 Sum_probs=34.4
Q ss_pred hHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh
Q 026733 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (234)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~ 112 (234)
+..-++.|++.|++|+.+..++++.... .+. .+ .+|.||.|-|+..
T Consensus 42 ~~~nl~~L~~~g~~V~~~VDat~l~~~~-----------~~~---~~---~FDrIiFNFPH~G 87 (166)
T PF10354_consen 42 AEENLEELRELGVTVLHGVDATKLHKHF-----------RLK---NQ---RFDRIIFNFPHVG 87 (166)
T ss_pred HHHHHHHHhhcCCccccCCCCCcccccc-----------ccc---CC---cCCEEEEeCCCCC
Confidence 3467777899999999999999986542 111 22 4999999999764
No 326
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=28.52 E-value=2.4e+02 Score=28.95 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEe-------------ecCCCeEEecCEEEEcCChh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-------------KATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~-------------~~~~g~~~~aD~VV~a~~~~ 111 (234)
+.+.+. .+.|+++++++.+.+|. + + +++...+. ..+++..+++|.||.++...
T Consensus 710 eEl~~a-leeGVe~~~~~~p~~I~--~---g--~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 710 EELEEA-LEDGVDFKELLSPESFE--D---G--TLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred HHHHHH-HHcCCEEEeCCceEEEE--C---C--eEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 334444 46899999999988886 2 2 33221110 01223368999999998853
No 327
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=27.53 E-value=1.7e+02 Score=26.58 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
+.+.+.+++.|++++.++ ++.+ +. + . ..|.. .+|+ .+.+|+||.|+..
T Consensus 98 ~~~~~~~~~~~v~~~~g~-~~~~--~~---~--~-~~v~~---~~g~~~~~~~d~lviATGs 147 (461)
T PRK05249 98 EVRRGQYERNRVDLIQGR-ARFV--DP---H--T-VEVEC---PDGEVETLTADKIVIATGS 147 (461)
T ss_pred HHHHHHHHHCCCEEEEEE-EEEe--cC---C--E-EEEEe---CCCceEEEEcCEEEEcCCC
Confidence 345566788899999885 3333 22 2 2 23433 2453 6899999999874
No 328
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.41 E-value=1.2e+02 Score=26.38 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=45.3
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.+...+.+|..+.-.-.|...-+...+. .+-.|++..|.++|- -.|+.|+-.+.... + + .
T Consensus 138 PcTp~av~~lL~~~~i~l~GK~vvViGrS~--iVGkPla~lL~~~~~--~~~aTVtvchs~T~--n--------l----~ 199 (293)
T PRK14185 138 SATPNGILELLKRYHIETSGKKCVVLGRSN--IVGKPMAQLMMQKAY--PGDCTVTVCHSRSK--N--------L----K 199 (293)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHcCCC--CCCCEEEEecCCCC--C--------H----H
Confidence 356666777777654333344555555554 678899999988761 11333333322210 0 1 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 200 ~~~~~ADIvIsAvGkp~ 216 (293)
T PRK14185 200 KECLEADIIIAALGQPE 216 (293)
T ss_pred HHHhhCCEEEEccCCcC
Confidence 22346999999999764
No 329
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=27.28 E-value=1.1e+02 Score=31.33 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHCCcEEEcCceeeEEEec
Q 026733 48 YLSGPIRKYITDKGGRFHLRWGCREILYD 76 (234)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~ 76 (234)
.+.+.-.+.+++.|++|++|+.| .+.++
T Consensus 590 evL~~die~l~~~GVe~~~gt~V-di~le 617 (1019)
T PRK09853 590 ELIQHDIEFVKAHGVKFEFGCSP-DLTVE 617 (1019)
T ss_pred HHHHHHHHHHHHcCCEEEeCcee-EEEhh
Confidence 45566678889999999999988 44443
No 330
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=26.89 E-value=2e+02 Score=26.31 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=32.3
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChh
Q 026733 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (234)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~ 111 (234)
+...+.++..|+++..+. ++.+..+++ + ..|.+.. .+++.+.+|+||+|+...
T Consensus 104 ~~~~~~~~~~~v~~~~g~-~~~~~~~~~--~----~~v~v~~-~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 104 GGIEGLFKKNKITVLKGR-GSFVGKTDA--G----YEIKVTG-EDETVITAKHVIIATGSE 156 (475)
T ss_pred HHHHHHHHhCCCEEEEEE-EEEecCCCC--C----CEEEEec-CCCeEEEeCEEEEeCCCC
Confidence 345556777899988765 344443331 2 2244421 245689999999998753
No 331
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.53 E-value=1.2e+02 Score=26.05 Aligned_cols=75 Identities=12% Similarity=0.224 Sum_probs=45.5
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.++..+.+|.++.-.-.|...-+...+. .+-.|++..|.++|.+|-..+. .. . .+ .
T Consensus 139 PcTp~av~~lL~~~~i~l~Gk~vvViGrS~--~VGkPla~lL~~~~AtVt~chs------~T---~-------~l----~ 196 (278)
T PRK14172 139 PCTPNSVITLIKSLNIDIEGKEVVVIGRSN--IVGKPVAQLLLNENATVTICHS------KT---K-------NL----K 196 (278)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHHCCCEEEEeCC------CC---C-------CH----H
Confidence 346666777777654334445555565554 5788999999988866532221 11 0 01 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 197 ~~~~~ADIvIsAvGkp~ 213 (278)
T PRK14172 197 EVCKKADILVVAIGRPK 213 (278)
T ss_pred HHHhhCCEEEEcCCCcC
Confidence 22346999999999764
No 332
>PLN02507 glutathione reductase
Probab=26.47 E-value=2e+02 Score=26.68 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=28.4
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEecCEEEEcCCh
Q 026733 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (234)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~--~~~aD~VV~a~~~ 110 (234)
+.+.++..|+++..+ +++.+..+ -..|.. .+|+ .+.+|++|.|+..
T Consensus 130 ~~~~l~~~gV~~i~g-~a~~vd~~--------~v~V~~---~~g~~~~~~~d~LIIATGs 177 (499)
T PLN02507 130 YKRLLANAGVKLYEG-EGKIVGPN--------EVEVTQ---LDGTKLRYTAKHILIATGS 177 (499)
T ss_pred HHHHHHhCCcEEEEE-EEEEecCC--------EEEEEe---CCCcEEEEEcCEEEEecCC
Confidence 345566788888777 44444222 123444 2554 5789999999874
No 333
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.36 E-value=48 Score=24.72 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=33.3
Q ss_pred hHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCChhh-HhhhC
Q 026733 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (234)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~~~-~~~Ll 117 (234)
.++|.+..+++|.+| +|+.++. .|++=.. +..+.-.||.||.++|... +.+.+
T Consensus 21 AeaLe~~A~~~g~~I-------KVETqGs-------~G~eN~L-T~edI~~Ad~VI~AaD~~i~~~~ff 74 (122)
T COG1445 21 AEALEKAAKKLGVEI-------KVETQGA-------VGIENRL-TAEDIAAADVVILAADIEVDLSRFF 74 (122)
T ss_pred HHHHHHHHHHcCCeE-------EEEcCCc-------ccccCcC-CHHHHHhCCEEEEEecccccHhHhh
Confidence 678888889999887 4555541 2332110 1334557999999999763 44333
No 334
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=25.99 E-value=66 Score=29.71 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=31.7
Q ss_pred eeeecCCCCcccchHHHHHHHHHCCcEEEcCceee-EEEec
Q 026733 37 LLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCR-EILYD 76 (234)
Q Consensus 37 ~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~-~i~~~ 76 (234)
.+|.|.--+.+.+++..++.|++.|++|++|++|- .|..+
T Consensus 163 ~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~ 203 (457)
T COG0493 163 LYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203 (457)
T ss_pred EecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence 35656555666889999999999999999999996 55443
No 335
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=25.93 E-value=99 Score=29.07 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=34.4
Q ss_pred hHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEecCEEEEcCCh
Q 026733 50 SGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (234)
Q Consensus 50 ~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g~~~~aD~VV~a~~~ 110 (234)
-..|.+.+..-- -+|+ ...|..|.+.+.++|..++.||.+. +|..+.|+.||.+...
T Consensus 127 kk~MQkei~st~nL~ir-e~~V~dliv~~~~~~~~~~~gV~l~---dgt~v~a~~VilTTGT 184 (679)
T KOG2311|consen 127 KKNMQKEISSTPNLEIR-EGAVADLIVEDPDDGHCVVSGVVLV---DGTVVYAESVILTTGT 184 (679)
T ss_pred HHHHHHHhccCCcchhh-hhhhhheeeccCCCCceEEEEEEEe---cCcEeccceEEEeecc
Confidence 344444444332 2333 3346666665431232247899885 9999999999998763
No 336
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.91 E-value=1.3e+02 Score=26.82 Aligned_cols=76 Identities=9% Similarity=0.134 Sum_probs=44.6
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.++..+.+|.++.-.-.|...-+.+.+. .+-.|++..|.++|.+| +-.+..-. + + .
T Consensus 195 PCTp~avi~LL~~~~i~l~GK~vvVIGRS~--iVGkPla~LL~~~~ATV------TicHs~T~--n--------l----~ 252 (345)
T PLN02897 195 SCTPKGCVELLIRSGVEIAGKNAVVIGRSN--IVGLPMSLLLQRHDATV------STVHAFTK--D--------P----E 252 (345)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCc--cccHHHHHHHHHCCCEE------EEEcCCCC--C--------H----H
Confidence 456666777777653333344555555544 57788999998887655 21111100 0 1 1
Q ss_pred CeEEecCEEEEcCChhhH
Q 026733 96 KKVVQADAYVAACDVPGI 113 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~~ 113 (234)
...-+||.||+|++.+.+
T Consensus 253 ~~~~~ADIvIsAvGkp~~ 270 (345)
T PLN02897 253 QITRKADIVIAAAGIPNL 270 (345)
T ss_pred HHHhhCCEEEEccCCcCc
Confidence 223469999999997643
No 337
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.88 E-value=1.2e+02 Score=26.28 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.+...+.+|.++.-.-.|...-+...+. .+-.|++..|.++|.+|-. .+.... + + .
T Consensus 141 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~aTVt~------chs~T~--~--------l----~ 198 (294)
T PRK14187 141 PCTPKGCLYLIKTITRNLSGSDAVVIGRSN--IVGKPMACLLLGENCTVTT------VHSATR--D--------L----A 198 (294)
T ss_pred CcCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHhhCCCEEEE------eCCCCC--C--------H----H
Confidence 346666777777654334455566665555 6788999999988765532 111100 0 1 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 199 ~~~~~ADIvVsAvGkp~ 215 (294)
T PRK14187 199 DYCSKADILVAAVGIPN 215 (294)
T ss_pred HHHhhCCEEEEccCCcC
Confidence 22446999999999764
No 338
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.50 E-value=1.3e+02 Score=25.86 Aligned_cols=75 Identities=7% Similarity=0.152 Sum_probs=45.5
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.++..+.+|.++.-.-.|...-+...+. .+-.|++..|.++|.+|-..+.- .. + + .
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~--~VG~Pla~lL~~~~AtVti~hs~----T~----~--------l----~ 195 (281)
T PRK14183 138 PCTPLGVMELLEEYEIDVKGKDVCVVGASN--IVGKPMAALLLNANATVDICHIF----TK----D--------L----K 195 (281)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEEEeCCC----Cc----C--------H----H
Confidence 345666777777654333455566666554 57889999999888665222110 00 0 1 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 196 ~~~~~ADIvV~AvGkp~ 212 (281)
T PRK14183 196 AHTKKADIVIVGVGKPN 212 (281)
T ss_pred HHHhhCCEEEEecCccc
Confidence 22346999999998654
No 339
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.07 E-value=1.9e+02 Score=26.51 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=28.8
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEecCEEEEcCCh
Q 026733 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (234)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g--~~~~aD~VV~a~~~ 110 (234)
....+++.|++++.++.. - .+. + ...|.. .+| +.+.+|++|.|+..
T Consensus 99 ~~~~~~~~gV~~~~g~a~-~--~~~---~---~v~v~~---~~g~~~~~~~d~lViATGs 146 (471)
T PRK06467 99 LAGMAKGRKVTVVNGLGK-F--TGG---N---TLEVTG---EDGKTTVIEFDNAIIAAGS 146 (471)
T ss_pred HHHHHHhCCCEEEEEEEE-E--ccC---C---EEEEec---CCCceEEEEcCEEEEeCCC
Confidence 345567789999987643 1 232 2 223433 245 47899999999874
No 340
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.83 E-value=1.3e+02 Score=26.08 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC
Q 026733 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (234)
Q Consensus 17 ~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g 96 (234)
|.+...+.+|.++.-.-.|...-+.+.+. .+-.|++..|.++|.+|-.-+ ... . .+ ..
T Consensus 140 cTp~aii~lL~~~~i~l~Gk~vvVIGrS~--iVGkPla~lL~~~~atVtv~h------s~T---~-------~l----~~ 197 (297)
T PRK14186 140 CTPAGVMRLLRSQQIDIAGKKAVVVGRSI--LVGKPLALMLLAANATVTIAH------SRT---Q-------DL----AS 197 (297)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHHCCCEEEEeC------CCC---C-------CH----HH
Confidence 56777777787654334455555565555 678899999998886652211 110 0 01 11
Q ss_pred eEEecCEEEEcCChhh
Q 026733 97 KVVQADAYVAACDVPG 112 (234)
Q Consensus 97 ~~~~aD~VV~a~~~~~ 112 (234)
..-.||.||+|++.+.
T Consensus 198 ~~~~ADIvIsAvGkp~ 213 (297)
T PRK14186 198 ITREADILVAAAGRPN 213 (297)
T ss_pred HHhhCCEEEEccCCcC
Confidence 2346999999999653
No 341
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.74 E-value=1.3e+02 Score=25.98 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=44.7
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.+...+.+|..+.-.-.|...-+...+. .+-.|++..|.++|.+|-.-+.-+ . + + .
T Consensus 136 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~aTVtichs~T----~----~--------l----~ 193 (287)
T PRK14173 136 PCTPAGVVRLLKHYGIPLAGKEVVVVGRSN--IVGKPLAALLLREDATVTLAHSKT----Q----D--------L----P 193 (287)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCC--ccHHHHHHHHHHCCCEEEEeCCCC----C----C--------H----H
Confidence 345666667777553333444555555555 578899999988886664222111 0 0 1 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 194 ~~~~~ADIvIsAvGkp~ 210 (287)
T PRK14173 194 AVTRRADVLVVAVGRPH 210 (287)
T ss_pred HHHhhCCEEEEecCCcC
Confidence 22346999999998764
No 342
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.51 E-value=1e+02 Score=26.56 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=44.1
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.++..+.++..+.-.-.|...-+...+- .+-.+++..|.++|.+|..-+ ... -.+ .
T Consensus 139 PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~--~VG~pla~lL~~~gatVtv~~------s~t----------~~l----~ 196 (286)
T PRK14175 139 PCTPLGIMEILKHADIDLEGKNAVVIGRSH--IVGQPVSKLLLQKNASVTILH------SRS----------KDM----A 196 (286)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCc--hhHHHHHHHHHHCCCeEEEEe------CCc----------hhH----H
Confidence 345666666777643333455555555444 577899999998886553211 110 001 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 197 ~~~~~ADIVIsAvg~p~ 213 (286)
T PRK14175 197 SYLKDADVIVSAVGKPG 213 (286)
T ss_pred HHHhhCCEEEECCCCCc
Confidence 23446999999998753
No 343
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.34 E-value=1.4e+02 Score=25.67 Aligned_cols=76 Identities=11% Similarity=0.236 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.+...+.+|.++.-.-.|...-+...+. .+-.|++..|.++|.+|-..+. ... + + .
T Consensus 137 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~atVtichs------~T~--~--------l----~ 194 (282)
T PRK14169 137 ASTPYGIMALLDAYDIDVAGKRVVIVGRSN--IVGRPLAGLMVNHDATVTIAHS------KTR--N--------L----K 194 (282)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHHCCCEEEEECC------CCC--C--------H----H
Confidence 355666777777653333344555555554 5788999999888765532111 100 0 1 1
Q ss_pred CeEEecCEEEEcCChhhH
Q 026733 96 KKVVQADAYVAACDVPGI 113 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~~ 113 (234)
...-+||.||+|++.+.+
T Consensus 195 ~~~~~ADIvI~AvG~p~~ 212 (282)
T PRK14169 195 QLTKEADILVVAVGVPHF 212 (282)
T ss_pred HHHhhCCEEEEccCCcCc
Confidence 223469999999997643
No 344
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.22 E-value=1.3e+02 Score=25.89 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=44.3
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.++..+.+|+++.-.-.|...-+...+. .+-.|++..|.+.| .+-|+.|+-..... . .+ .
T Consensus 138 PcTp~av~~lL~~~~i~l~Gk~vvViGrS~--iVG~Pla~lL~~~~--~~~~AtVt~~hs~t---~-------~l----~ 199 (286)
T PRK14184 138 PCTPAGVMTLLERYGLSPAGKKAVVVGRSN--IVGKPLALMLGAPG--KFANATVTVCHSRT---P-------DL----A 199 (286)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHhCCc--ccCCCEEEEEeCCc---h-------hH----H
Confidence 456666777777654333444555555554 57889999998733 11223333333221 0 01 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 200 ~~~~~ADIVI~AvG~p~ 216 (286)
T PRK14184 200 EECREADFLFVAIGRPR 216 (286)
T ss_pred HHHHhCCEEEEecCCCC
Confidence 23446999999997543
No 345
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.67 E-value=1.1e+02 Score=26.45 Aligned_cols=74 Identities=8% Similarity=0.151 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC
Q 026733 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (234)
Q Consensus 17 ~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g 96 (234)
|.++..+.+|.++.-.-.|...-+..++. .+-.|++..|.++|.+|.. .+... . .+ ..
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvVvGrs~--~VG~Pla~lL~~~gAtVtv------~hs~t---~-------~l----~~ 196 (285)
T PRK14191 139 ATPMGVMRLLKHYHIEIKGKDVVIIGASN--IVGKPLAMLMLNAGASVSV------CHILT---K-------DL----SF 196 (285)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCc--hhHHHHHHHHHHCCCEEEE------EeCCc---H-------HH----HH
Confidence 56666777777654333455666666664 5778999999888866521 11110 0 01 12
Q ss_pred eEEecCEEEEcCChhh
Q 026733 97 KVVQADAYVAACDVPG 112 (234)
Q Consensus 97 ~~~~aD~VV~a~~~~~ 112 (234)
..-.||.||+|++.+.
T Consensus 197 ~~~~ADIvV~AvG~p~ 212 (285)
T PRK14191 197 YTQNADIVCVGVGKPD 212 (285)
T ss_pred HHHhCCEEEEecCCCC
Confidence 2346999999997654
No 346
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=22.94 E-value=51 Score=32.31 Aligned_cols=33 Identities=6% Similarity=-0.108 Sum_probs=23.8
Q ss_pred eeecCCCCcccchHHHHHHHHHCCcEEEcCcee
Q 026733 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGC 70 (234)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V 70 (234)
.|++.-.+.+.+.+...+.+++.|++|++|+.|
T Consensus 472 ~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 472 YGIPEFRLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 444433334456777788899999999999876
No 347
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.59 E-value=1.8e+02 Score=25.16 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.++..+.++.++.-.-.|...-+.+.+. .+-.|++..|.++|.+|..-+ ... . .+ .
T Consensus 140 PcTp~av~~ll~~~~i~l~Gk~vvViGrs~--iVG~Pla~lL~~~~atVtv~h------s~T---~-------~l----~ 197 (285)
T PRK10792 140 PCTPRGIMTLLERYGIDTYGLNAVVVGASN--IVGRPMSLELLLAGCTVTVCH------RFT---K-------NL----R 197 (285)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCc--ccHHHHHHHHHHCCCeEEEEE------CCC---C-------CH----H
Confidence 346666677777653333345555555444 577899999888876552211 110 0 01 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 198 ~~~~~ADIvi~avG~p~ 214 (285)
T PRK10792 198 HHVRNADLLVVAVGKPG 214 (285)
T ss_pred HHHhhCCEEEEcCCCcc
Confidence 23446999999997654
No 348
>PLN02852 ferredoxin-NADP+ reductase
Probab=22.19 E-value=3.8e+02 Score=25.03 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=34.7
Q ss_pred CCcEEEcCceeeEEEeccCCCCcceEEEEEEeec--------------CCC--eEEecCEEEEcCChh
Q 026733 60 KGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------------TDK--KVVQADAYVAACDVP 111 (234)
Q Consensus 60 ~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~--------------~~g--~~~~aD~VV~a~~~~ 111 (234)
+|+.+++...-.+|.-.++.+| ++.+|++... .+| +.+++|.||.++...
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~--~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~ 353 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNG--HVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYK 353 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCC--cEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCC
Confidence 5789999999999975321014 7888887520 023 357899999998864
No 349
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=22.06 E-value=82 Score=18.37 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=11.2
Q ss_pred HHHHHHHHhhCCCC
Q 026733 221 RRVAKQLYFHHPKV 234 (234)
Q Consensus 221 ~~~l~~L~~~~P~~ 234 (234)
+..+..|..+||++
T Consensus 3 ~~~v~~L~~mFP~l 16 (43)
T smart00546 3 DEALHDLKDMFPNL 16 (43)
T ss_pred HHHHHHHHHHCCCC
Confidence 45778899999975
No 350
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=21.90 E-value=49 Score=30.18 Aligned_cols=32 Identities=9% Similarity=-0.032 Sum_probs=23.2
Q ss_pred eecCCCCcccchHHHHHHHHHCCcEEEcCcee
Q 026733 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGC 70 (234)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V 70 (234)
|++...+.+.+.+...+.+++.|+++++++.|
T Consensus 175 gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 175 GIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred cCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 33333344456777788899999999999866
No 351
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.62 E-value=1.8e+02 Score=25.10 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=44.5
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.+...+.+|..+.-.-.|...-+...+. .+-.|++..|.++|.+|-.-+.-+ . + + .
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~--iVGkPla~lL~~~~atVtichs~T----~----~--------l----~ 195 (284)
T PRK14170 138 PCTPAGIIELIKSTGTQIEGKRAVVIGRSN--IVGKPVAQLLLNENATVTIAHSRT----K----D--------L----P 195 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEEEeCCCC----C----C--------H----H
Confidence 355666677777654334445555565554 577899999988876553221100 0 0 1 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-+||.||+|++.+.
T Consensus 196 ~~~~~ADIvI~AvG~~~ 212 (284)
T PRK14170 196 QVAKEADILVVATGLAK 212 (284)
T ss_pred HHHhhCCEEEEecCCcC
Confidence 12346999999999764
No 352
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.24 E-value=2e+02 Score=24.84 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=44.6
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
-|.+...+.+|.++.-.-.|...-+...+. .+-.|++..|.++|.+|-.-+. .-. + + .
T Consensus 138 PcTp~avi~ll~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~AtVtichs------~T~--n--------l----~ 195 (282)
T PRK14182 138 PCTPAGVMRMLDEARVDPKGKRALVVGRSN--IVGKPMAMMLLERHATVTIAHS------RTA--D--------L----A 195 (282)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEEEeCC------CCC--C--------H----H
Confidence 456677777777653333445555565555 6788999999888765532111 100 0 1 1
Q ss_pred CeEEecCEEEEcCChh
Q 026733 96 KKVVQADAYVAACDVP 111 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~ 111 (234)
...-.||.||+|++.+
T Consensus 196 ~~~~~ADIvI~AvGk~ 211 (282)
T PRK14182 196 GEVGRADILVAAIGKA 211 (282)
T ss_pred HHHhhCCEEEEecCCc
Confidence 2234699999999864
No 353
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=20.95 E-value=1.2e+02 Score=17.87 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHh
Q 026733 217 DEIIRRVAKQLYF 229 (234)
Q Consensus 217 eei~~~~l~~L~~ 229 (234)
+||++.+.++|.|
T Consensus 10 qEIL~EvrkEl~K 22 (40)
T PF08776_consen 10 QEILEEVRKELQK 22 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 354
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.91 E-value=2.2e+02 Score=24.61 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC
Q 026733 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (234)
Q Consensus 17 ~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~g 96 (234)
|.++..+.++.++.-.-.|...-+...+. .+-.|++..|.++|.+|..-+ ... . .+ ..
T Consensus 141 cTp~avi~ll~~y~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~atVt~ch------s~T---~-------~l----~~ 198 (284)
T PRK14177 141 CTPYGMVLLLKEYGIDVTGKNAVVVGRSP--ILGKPMAMLLTEMNATVTLCH------SKT---Q-------NL----PS 198 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEEEeC------CCC---C-------CH----HH
Confidence 46666777777654334445555555554 678899999998876553222 110 0 01 12
Q ss_pred eEEecCEEEEcCChhhH
Q 026733 97 KVVQADAYVAACDVPGI 113 (234)
Q Consensus 97 ~~~~aD~VV~a~~~~~~ 113 (234)
..-.||.||+|++-+.+
T Consensus 199 ~~~~ADIvIsAvGk~~~ 215 (284)
T PRK14177 199 IVRQADIIVGAVGKPEF 215 (284)
T ss_pred HHhhCCEEEEeCCCcCc
Confidence 23469999999997643
No 355
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=20.78 E-value=93 Score=18.08 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.3
Q ss_pred HHHHHHHhhCCCC
Q 026733 222 RVAKQLYFHHPKV 234 (234)
Q Consensus 222 ~~l~~L~~~~P~~ 234 (234)
..++.|..+||++
T Consensus 3 ~~v~~L~~mFP~~ 15 (42)
T PF02845_consen 3 EMVQQLQEMFPDL 15 (42)
T ss_dssp HHHHHHHHHSSSS
T ss_pred HHHHHHHHHCCCC
Confidence 4568899999975
No 356
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.52 E-value=2e+02 Score=25.00 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHhcCCccceeeecCCCCcccchHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC
Q 026733 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (234)
Q Consensus 16 ~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~ 95 (234)
=|.+...+.+|..+.-.-.|...-+...+. .+-.|++..|.++|.. .|+.|+-.+... . .+ .
T Consensus 142 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~~~--~~atVtv~hs~T---~-------~l----~ 203 (297)
T PRK14168 142 PCTPAGIQEMLVRSGVETSGAEVVVVGRSN--IVGKPIANMMTQKGPG--ANATVTIVHTRS---K-------NL----A 203 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCC--cccHHHHHHHHhcccC--CCCEEEEecCCC---c-------CH----H
Confidence 345666677777654334445555565555 5788999999887421 112232222111 0 01 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026733 96 KKVVQADAYVAACDVPG 112 (234)
Q Consensus 96 g~~~~aD~VV~a~~~~~ 112 (234)
...-.||.||+|++.+.
T Consensus 204 ~~~~~ADIvVsAvGkp~ 220 (297)
T PRK14168 204 RHCQRADILIVAAGVPN 220 (297)
T ss_pred HHHhhCCEEEEecCCcC
Confidence 22346999999998664
No 357
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=20.40 E-value=95 Score=28.29 Aligned_cols=26 Identities=4% Similarity=-0.133 Sum_probs=21.1
Q ss_pred cccchHHHHHHHHHCCcEEEcCceee
Q 026733 46 DVYLSGPIRKYITDKGGRFHLRWGCR 71 (234)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~ 71 (234)
...+.+...+.+++.|+++++++.|.
T Consensus 189 ~~~~~~~~~~~l~~~gv~~~~~~~v~ 214 (457)
T PRK11749 189 PKDIVDREVERLLKLGVEIRTNTEVG 214 (457)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEC
Confidence 33567778888999999999999873
Done!