BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026734
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 13/128 (10%)
Query: 116 IDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKNKGKA 172
++ +L+P + R+ +DIV P +R CFTK Y Y++GTGS+L T VQ +N K+
Sbjct: 215 VNQYLLPPKSLLRYALLLDIVQPTXRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKS 274
Query: 173 S---SLKEQ-------HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVV 222
S +EQ LRYFTP+E+ANL FP +F FP ++++QRY LLGNSL++ VV
Sbjct: 275 LTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVV 334
Query: 223 APLLQYLF 230
A L++ L+
Sbjct: 335 AKLIKILY 342
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica
Methyltransferase Ehmeth
Length = 327
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 117 DHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPK--NKGKASS 174
+ + +P LI + G DIV D KR CCFTKSY + V+GTGS+ ++P KA
Sbjct: 206 ESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGTGSIYCPIEPHFIPVKKAED 265
Query: 175 LKEQHLRYFTPREVANLHSFPGDFQFP-HHLSLRQRYALLGNSLSIAVVAPLLQYLF 230
L ++LRYFTP E+ +H F +F L+ +Q+Y LGNS+S V+A L++YLF
Sbjct: 266 LLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLF 322
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 100 DFG---AAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKG 156
DFG + E +E D + FLVP ++ R DI Y SKR CCFTK+Y Y G
Sbjct: 188 DFGVPHSLESIIEED---VDEKFLVPEKML-RCAKVFDICYKTSKRSCCFTKAYTHYADG 243
Query: 157 TGSLL-------------ATVQPKNKGK--ASSLKEQHLRYFTPREVANLHSFPGDFQFP 201
TGS+ A Q + G+ KE LRYFTP+EV + FP + P
Sbjct: 244 TGSIFTDKPREVVQKCYAAAAQNEIGGEKFVELFKELKLRYFTPKEVLMIMCFPKSYNLP 303
Query: 202 HHLSLRQRYALLGNSLSIAVVAPLLQYLF 230
++S++Q Y LLGNS+++ V++ LL+ LF
Sbjct: 304 TNISMKQCYRLLGNSVNVKVISELLKILF 332
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 167 KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 219
KN K KE R T RE A + FP DF F H+ SL Y ++GN++ +
Sbjct: 259 KNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPV 310
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 167 KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 219
KN K KE R T RE A + FP DF F H+ SL Y ++GN++ +
Sbjct: 259 KNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPV 310
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 179 HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLF 230
H R TPRE A L FP F+F H++ + +GNS+S V +L+ L+
Sbjct: 315 HPRVITPREAARLQGFPDWFRF--HVTKWHSFRQIGNSVSPIVAEYILKGLY 364
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 130 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 185
G VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 347 GFGYGXVYPNNPQSVTRTLSARYYKDGAEILIDRGWDXATGEKDFDDPLNQQHRPRRLTP 406
Query: 186 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 216
RE A L F PG+ +F +S Q Y GNS
Sbjct: 407 RECARLXGFEAPGEAKFRIPVSDTQAYRQFGNS 439
>pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
pdb|3LX6|B Chain B, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 410
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 130 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 185
G VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 285 GFGYGXVYPNNPQSVTRTLSARYYKDGAEILIDRGWDXATGEKDFDDPLNQQHRPRRLTP 344
Query: 186 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 216
RE A L F PG+ +F +S Q Y GNS
Sbjct: 345 RECARLXGFEAPGEAKFRIPVSDTQAYRQFGNS 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,457,348
Number of Sequences: 62578
Number of extensions: 303181
Number of successful extensions: 504
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 8
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)