BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026734
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens
GN=TRDMT1 PE=1 SV=1
Length = 391
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 13/128 (10%)
Query: 116 IDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKNKGKA 172
++ +L+P + R+ +DIV P +R CFTK Y Y++GTGS+L T VQ +N K+
Sbjct: 263 VNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKS 322
Query: 173 S---SLKEQ-------HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVV 222
S +EQ LRYFTP+E+ANL FP +F FP ++++QRY LLGNSL++ VV
Sbjct: 323 LTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVV 382
Query: 223 APLLQYLF 230
A L++ L+
Sbjct: 383 AKLIKILY 390
>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2
SV=1
Length = 391
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 14/124 (11%)
Query: 119 FLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKNKGKA-SS 174
FL P SL+ R+ +DIV P S+R CFTK Y RY++GTGS+L T VQ +N K+ +S
Sbjct: 267 FLPPKSLL-RYALLLDIVKPTSRRSMCFTKGYGRYIEGTGSVLQTTEDVQIENIYKSLTS 325
Query: 175 LKEQ---------HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 225
L ++ LR+FTP+E+ANL FP +F FP +++QRY LLGNSL++ VVA L
Sbjct: 326 LSQEEKIMRLSMLQLRFFTPKEIANLLGFPPEFGFPEMTTVKQRYRLLGNSLNVHVVAKL 385
Query: 226 LQYL 229
++ L
Sbjct: 386 IKIL 389
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus
GN=Trdmt1 PE=2 SV=1
Length = 391
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 13/125 (10%)
Query: 118 HFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKN------ 168
+L+P + R+ +DIV P S+R CFTK Y Y++GTGS+L T VQ +N
Sbjct: 265 QYLLPAKSLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENIYKSLP 324
Query: 169 ----KGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAP 224
+ K + L LRYFTP+E+ANL FP +F FP +++QRY LLGNSL++ VV+
Sbjct: 325 DLPPEEKIAKLSMLKLRYFTPKEIANLLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSK 384
Query: 225 LLQYL 229
LL L
Sbjct: 385 LLTVL 389
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus
GN=Trdmt1 PE=2 SV=2
Length = 415
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 77/129 (59%), Gaps = 19/129 (14%)
Query: 117 DHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQ----------- 165
D +L+P L+ R+ +DIV P S+R CFTK Y Y++GTGS+L +
Sbjct: 264 DEYLLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQAAEDAQIENIYKSL 323
Query: 166 ----PKNK-GKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIA 220
P+ K K S LK LRYFTP+E+ANL FP +F FP +++QRY LLGNSL++
Sbjct: 324 PDLPPEEKIAKLSMLK---LRYFTPKEIANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVH 380
Query: 221 VVAPLLQYL 229
VVA LL L
Sbjct: 381 VVAKLLTVL 389
>sp|Q54JH6|CMT1_DICDI DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum
GN=dnmA PE=1 SV=1
Length = 379
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 117 DHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKA---- 172
+ + VP +L+ G DI DSK C TKSY ++++GTGS+ +Q N KA
Sbjct: 245 EKYKVPHNLLLSKGMLFDIKQKDSKTSNCVTKSYGKFIEGTGSI---IQMDNNFKADIND 301
Query: 173 -SSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231
SL LRYF+P+E+ LH FP +F+F L+ Q Y L+GNSL++ +V+ LL+ L +
Sbjct: 302 NKSLIPLKLRYFSPKEITRLHGFPEEFKFSPKLTTIQCYRLIGNSLNVKIVSELLKVLVS 361
>sp|P40999|PMT1M_SCHPO tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pmt1 PE=1 SV=1
Length = 330
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 108 VEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPK 167
+E++R S ++V S++ +WG DIV PDS CCCFT+ Y V+G GS+L +
Sbjct: 202 LEIERDWS--SYMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSILQMSDHE 259
Query: 168 NKGKASSLKEQ--HLRYFTPREVANLHSFPGDFQFPH-HLSLRQRYALLGNSLSIAVVAP 224
N + LRYFT REVA L FP ++ +++ + Y LLGNS+++ VV+
Sbjct: 260 NTHEQFERNRMALQLRYFTAREVARLMGFPESLEWSKSNVTEKCMYRLLGNSINVKVVSY 319
Query: 225 LLQYLF 230
L+ L
Sbjct: 320 LISLLL 325
>sp|P25263|MTC1_HERAU Modification methylase HgiCI OS=Herpetosiphon aurantiacus GN=hgiCIM
PE=3 SV=2
Length = 420
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 159 SLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLS 218
S+ T+ + K + + +R TPRE A L FP FQF SL Y GNS+S
Sbjct: 342 SVSITLVSSDAHKIGVVHQNRIRRITPRECARLQGFPDSFQFHPKDSL--AYRQFGNSVS 399
Query: 219 IAVVAPLLQYLFAQA 233
+ VV ++ LF A
Sbjct: 400 VPVVKAVILDLFKSA 414
>sp|P19888|MTBA_BACAR Modification methylase BanI OS=Bacillus aneurinolyticus GN=banIM
PE=1 SV=1
Length = 428
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 181 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLF 230
R TPRE A L FP DF H + Y LGNS+++ VV +++ LF
Sbjct: 364 RRITPRECARLQGFPDDFIL--HSNDNFAYKQLGNSVTVKVVEKVIEDLF 411
>sp|P34879|MTS2_SHISO Modification methylase SsoII OS=Shigella sonnei GN=ssoIIM PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 181 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231
R TPRE + L FP DF P +S Q Y GNS+++ V+ + + + +
Sbjct: 327 RKITPREASRLQGFPSDFIIP--VSDTQAYKQFGNSVAVPVINAIAEKIIS 375
>sp|P20589|MTH3_HAEAE Modification methylase HaeIII OS=Haemophilus aegyptius GN=haeIIIM
PE=1 SV=1
Length = 330
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 167 KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 219
KN K KE R T RE A + FP DF F H+ SL Y ++GN++ +
Sbjct: 259 KNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPV 310
>sp|P34877|MTSA_LACLC Modification methylase ScrFIA OS=Lactococcus lactis subsp. cremoris
GN=scrFIAM PE=3 SV=1
Length = 389
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 17/82 (20%)
Query: 152 RYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYA 211
RY K +L ++ KNK + R TPRE A L FP +F P +S Q Y
Sbjct: 316 RYYKDGSEIL--IEQKNK---------NPRKITPREAARLQGFPENFIIP--VSDTQAYK 362
Query: 212 LLGNSLSI----AVVAPLLQYL 229
GNS+++ A+ +L+ L
Sbjct: 363 EFGNSVAVPTIHAIAEKMLEVL 384
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 181 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 225
R T RE A L FP FQF ++++RY +GN+++++V L
Sbjct: 1215 RVLTIRESARLQGFPDYFQFCG--TIKERYCQIGNAVAVSVSRAL 1257
>sp|P50185|MTD5_DACSA Modification methylase DsaV OS=Dactylococcopsis salina GN=dsaVM
PE=3 SV=1
Length = 351
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 181 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231
R TPRE A L FP F P +S Q + GNS+ ++V+ + Q + +
Sbjct: 259 RVLTPRECARLQGFPESFVIP--VSDCQAWRQFGNSVPVSVIRAIAQKMLS 307
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica
GN=nlaXM PE=3 SV=1
Length = 313
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 181 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231
R TP E A L FP FQ P +S Q Y GNS+ + V+ + + + A
Sbjct: 255 RKITPPEAARLQGFPDSFQIP--VSDAQAYRQFGNSVCVPVIRAIAEQMKA 303
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 168 NKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 219
N + ++ KE R T REVA + FP +F+F + ++ Y ++GN++ +
Sbjct: 264 NDYRFAAGKETLYRRMTVREVARIQGFPDNFKFIYQ-NVNDAYKMIGNAVPV 314
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 167 KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLL 226
KN K + KE R + RE A + FP F+F ++ SL Y ++GN++ + L
Sbjct: 262 KNMYKFVAGKENLYRRLSIRECARIQGFPDTFKF-YYTSLEDGYKMVGNAVPVD-----L 315
Query: 227 QYLFAQ 232
Y+ A+
Sbjct: 316 AYIIAK 321
>sp|P43420|MTB6_BACSF Modification methylase Bsp6I OS=Bacillus sp. (strain RFL6)
GN=bsp6IM PE=3 SV=1
Length = 315
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 152 RYVKGTGSLLATVQPKNKGKASS----LKEQH-LRYFTPREVANLHSFPGDFQFPHHLSL 206
+YV+ S + N G +K +H +R TPRE N +P DF P L+
Sbjct: 229 KYVRENKSNVCPTLTANMGTGGHNVPLVKTKHGIRKLTPRECFNFQGYPEDFILP-ELAP 287
Query: 207 RQRYALLGNSLSIAVVAPLLQYLF 230
Y GNS+ + V+ + + ++
Sbjct: 288 THLYKQAGNSVVVPVIRRIAENIY 311
>sp|P25262|MTB1_HERAU Modification methylase HgiBI OS=Herpetosiphon aurantiacus GN=hgiBIM
PE=3 SV=1
Length = 437
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 178 QHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 225
+ R T E A L FPG FQF H + + L+GNS++ V+ L
Sbjct: 375 KRYRKITVSEAARLQGFPGSFQF--HSNQSANFRLIGNSVAPPVIVAL 420
>sp|P0AED9|DCM_ECOLI DNA-cytosine methyltransferase OS=Escherichia coli (strain K12)
GN=dcm PE=1 SV=1
Length = 472
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 130 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 185
G +VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 345 GFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTP 404
Query: 186 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 216
RE A L F PG+ +F +S Q Y GNS
Sbjct: 405 RECARLMGFEAPGEAKFRIPVSDTQAYRQFGNS 437
>sp|P0AEE0|DCM_ECO57 DNA-cytosine methyltransferase OS=Escherichia coli O157:H7 GN=dcm
PE=3 SV=1
Length = 472
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 130 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 185
G +VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 345 GFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTP 404
Query: 186 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 216
RE A L F PG+ +F +S Q Y GNS
Sbjct: 405 RECARLMGFEAPGEAKFRIPVSDTQAYRQFGNS 437
>sp|P37367|ATA1_SYNY3 Cation-transporting ATPase pma1 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=pma1 PE=3 SV=2
Length = 905
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 80 SGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPD 139
SGD+V + L VD+ E V V++ V + PL+ ER A
Sbjct: 150 SGDKVPADLRLLKVRNLQVDESALTGEAVPVEKAVELLPEETPLA--ERLNMA------- 200
Query: 140 SKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTP 185
+ S+ + +GTG ++AT G+ S E+ + TP
Sbjct: 201 ------YAGSFVTFGQGTGVVVATANATEMGQISQSMEKQVSLMTP 240
>sp|P17044|MTBF_BACIU Modification methylase BsuFI OS=Bacillus subtilis GN=hsdFM PE=3
SV=1
Length = 409
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 177 EQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 225
E LR F+ E+ L FP DF+ P +S Q Y GNS+++ ++ +
Sbjct: 345 ETGLRLFSELELKRLMGFPVDFKVP--VSRTQMYRQFGNSVAVPMIKAV 391
>sp|P10596|INV4_YEASX Invertase 4 OS=Saccharomyces cerevisiae GN=SUC4 PE=2 SV=1
Length = 532
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 79 NSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLV 121
N GD V+T T F++TG A G+ T VD ID F V
Sbjct: 490 NDGDVVSTNTYFMTTGNA----LGSVNMTTGVDNLFYIDKFQV 528
>sp|P10594|INV1_YEASX Invertase 1 OS=Saccharomyces cerevisiae GN=SUC1 PE=1 SV=1
Length = 532
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 79 NSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLV 121
N GD V+T T F++TG A G+ T VD ID F V
Sbjct: 490 NDGDVVSTNTYFMTTGNA----LGSVNMTTGVDNLFYIDKFQV 528
>sp|P00724|INV2_YEAST Invertase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SUC2 PE=1 SV=1
Length = 532
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 79 NSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLV 121
N GD V+T T F++TG A G+ T VD ID F V
Sbjct: 490 NDGDVVSTNTYFMTTGNA----LGSVNMTTGVDNLFYIDKFQV 528
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,639,792
Number of Sequences: 539616
Number of extensions: 3794776
Number of successful extensions: 7109
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7093
Number of HSP's gapped (non-prelim): 26
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)