Query 026734
Match_columns 234
No_of_seqs 220 out of 1356
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qv2_A 5-cytosine DNA methyltr 100.0 2.4E-30 8.4E-35 236.0 13.6 156 8-232 166-324 (327)
2 4h0n_A DNMT2; SAH binding, tra 100.0 2.5E-29 8.6E-34 229.7 10.7 164 8-231 155-333 (333)
3 1g55_A DNA cytosine methyltran 99.9 1.7E-26 5.7E-31 210.4 10.0 115 117-231 216-343 (343)
4 3me5_A Cytosine-specific methy 99.8 9.9E-20 3.4E-24 174.3 10.1 112 117-231 322-454 (482)
5 3g7u_A Cytosine-specific methy 99.7 1.9E-18 6.6E-23 159.9 7.4 85 145-231 277-365 (376)
6 3ubt_Y Modification methylase 99.7 7E-18 2.4E-22 149.5 8.4 56 175-231 267-322 (331)
7 4ft4_B DNA (cytosine-5)-methyl 99.7 5.3E-18 1.8E-22 167.6 7.5 84 145-231 656-739 (784)
8 4dkj_A Cytosine-specific methy 99.6 6.4E-17 2.2E-21 151.7 3.7 56 176-231 331-390 (403)
9 2c7p_A Modification methylase 99.6 2E-16 6.8E-21 143.8 6.7 56 174-231 265-320 (327)
10 3swr_A DNA (cytosine-5)-methyl 99.6 8.8E-16 3E-20 157.8 8.0 86 144-231 910-996 (1002)
11 3av4_A DNA (cytosine-5)-methyl 99.6 1.1E-15 3.9E-20 160.6 7.9 84 146-231 1222-1306(1330)
12 2qrv_A DNA (cytosine-5)-methyl 99.6 1.3E-15 4.5E-20 137.2 4.0 57 175-231 234-290 (295)
No 1
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.97 E-value=2.4e-30 Score=236.03 Aligned_cols=156 Identities=37% Similarity=0.604 Sum_probs=129.4
Q ss_pred CCCCCCceeEeeecCCCCccccccccccccCCCCCCCCCcccccccCCCCCcchhhcccCcchHHHhhcccCCCCCcccc
Q 026734 8 FPPHVNPTLGKAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTE 87 (234)
Q Consensus 8 ~~~~~~ry~~lAk~~~~~f~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~le~~~~~~~~~~~ 87 (234)
.|-+|.|+|++|.|+.++||.+.. .....+|.+|||.
T Consensus 166 vPQ~R~R~fivg~r~~f~fP~~~~---------------------------------~~~~~~l~d~Le~---------- 202 (327)
T 3qv2_A 166 IPNSRTRYYVMARLTPFKNEIQLH---------------------------------QEKESMISNYLDN---------- 202 (327)
T ss_dssp CSBCCCEEEEEEESSCCCSCCCCC---------------------------------CCSCCCGGGGCCS----------
T ss_pred CCccceEEEEEEEeCCCCCCCccc---------------------------------ccccccHHHHhcc----------
Confidence 799999999999998754432210 0123568899983
Q ss_pred ccccccCCccccccCCccccchhcccccccccCCChhHHhhhcCcceeeccCCCCCcccccceeeeecCCcceeeecCC-
Q 026734 88 TGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQP- 166 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~k~g~~~DIV~p~s~~s~cFTksY~r~~~GtgSvl~~~~~- 166 (234)
+..++|.++++++.+|+..+||++|++++++|||++|++|++|+|+++.....
T Consensus 203 --------------------------~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y~~y~~~~gs~l~~~~~~ 256 (327)
T 3qv2_A 203 --------------------------NVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGTGSIYCPIEPH 256 (327)
T ss_dssp --------------------------SCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTTTTSSTTSCCEEESSCSS
T ss_pred --------------------------cccccccCCHHHHHhhhcccccccccccccccccccceEEecCCCceeeccccc
Confidence 11366999999999999999999999999999999999999999999854321
Q ss_pred -CCCCCCccccCCCcccCcHHHHHHhCCCCCCeecC-CCCCHHHHHHHhcCcccHHHHHHHHHHHHhh
Q 026734 167 -KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFP-HHLSLRQRYALLGNSLSIAVVAPLLQYLFAQ 232 (234)
Q Consensus 167 -~~~~k~~~l~~~~lR~lTprE~aRLQgFPddf~fp-~~~s~~q~ykqiGNAV~v~vv~~La~~Ll~~ 232 (234)
........+++.++|+|||||++||||||++|.|+ ..++.+|+|+|+||||+|+|+++|++.|++.
T Consensus 257 ~~~~~~~~~~~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~ 324 (327)
T 3qv2_A 257 FIPVKKAEDLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDD 324 (327)
T ss_dssp CCCCSSGGGGTTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTT
T ss_pred ccccCCceeecCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHH
Confidence 11223556788999999999999999999999998 6689999999999999999999999999864
No 2
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.96 E-value=2.5e-29 Score=229.66 Aligned_cols=164 Identities=34% Similarity=0.618 Sum_probs=130.0
Q ss_pred CCCCCCceeEeeecCCCCccccccccccccCCCCCCCCCcccccccCCCCCcchhhcccCcchHHHhhcccCCCCCcccc
Q 026734 8 FPPHVNPTLGKAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTE 87 (234)
Q Consensus 8 ~~~~~~ry~~lAk~~~~~f~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~le~~~~~~~~~~~ 87 (234)
.|-+|.|+|++|.|+.+.|.++..+..+...|.| ...+.+|.+|||.+
T Consensus 155 vPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~-----------------------~~~~~~l~d~Le~~--------- 202 (333)
T 4h0n_A 155 VPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKD-----------------------FGVPHSLESIIEED--------- 202 (333)
T ss_dssp CSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSC-----------------------CCSCCCSSTTCCSS---------
T ss_pred CCccceEEEEEEEeCCCCCCCCcccchhhhCCCC-----------------------ccccccHHHHhccC---------
Confidence 8999999999999998777665433222121221 12256788999841
Q ss_pred ccccccCCccccccCCccccchhcccccccccCCChhHHhhhcCcceeeccCCCCCcccccceeeeecCCcceeeecCC-
Q 026734 88 TGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQP- 166 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~k~g~~~DIV~p~s~~s~cFTksY~r~~~GtgSvl~~~~~- 166 (234)
..++|+++++++ ||+..+|++.|.+.+++|+|++|+++.+|+|+++.+...
T Consensus 203 ---------------------------~~~~y~~~~~~~-~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~ 254 (333)
T 4h0n_A 203 ---------------------------VDEKFLVPEKML-RCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPRE 254 (333)
T ss_dssp ---------------------------CCGGGBCCHHHH-TTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHH
T ss_pred ---------------------------CcccccCCHHHH-HHHHHhccCChhhhhhhhhccccceEEeccCceecccccc
Confidence 136799999998 899999999999999999999999999999998754310
Q ss_pred ---------C-----CCCCCccccCCCcccCcHHHHHHhCCCCCCeecCCCCCHHHHHHHhcCcccHHHHHHHHHHHHh
Q 026734 167 ---------K-----NKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231 (234)
Q Consensus 167 ---------~-----~~~k~~~l~~~~lR~lTprE~aRLQgFPddf~fp~~~s~~q~ykqiGNAV~v~vv~~La~~Ll~ 231 (234)
. .......+++.++|+|||||++||||||++|+|+..++.+|+|+|+||||+|+||++|++.|++
T Consensus 255 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~ 333 (333)
T 4h0n_A 255 VVQKCYAAAAQNEIGGEKFVELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILFE 333 (333)
T ss_dssp HHHHHHHHGGGSCTTCHHHHHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHHC
T ss_pred chhhhhcccccCCCCcccceeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHhC
Confidence 0 0001223467899999999999999999999998778999999999999999999999999974
No 3
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.93 E-value=1.7e-26 Score=210.42 Aligned_cols=115 Identities=43% Similarity=0.826 Sum_probs=97.5
Q ss_pred cccCCChhHHhhhcCcceeeccCCCCCcccccceeeeecCCcceeeecCC-CC------------CCCCccccCCCcccC
Q 026734 117 DHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQP-KN------------KGKASSLKEQHLRYF 183 (234)
Q Consensus 117 ~~y~v~~~~l~k~g~~~DIV~p~s~~s~cFTksY~r~~~GtgSvl~~~~~-~~------------~~k~~~l~~~~lR~l 183 (234)
.+|.++++.+.+|...+|++.|.+...+|++++|+++..|+|+++.+... .+ ......+|+.+.|+|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~R~l 295 (343)
T 1g55_A 216 NQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYF 295 (343)
T ss_dssp HHHBCCHHHHHHHGGGCCEECTTCSCCCCCCTTTTTCCTTSCCEEECCSSCCHHHHHHTTTTCCHHHHHHHHHTTCEECC
T ss_pred hhccCCHHHHHHHHHHhCCCCccccccchhhccceeeecccccccccccccchhhccccccCCCCccceeccCCCCcccc
Confidence 45889999999999999999999889999999999999999987753210 00 001234678899999
Q ss_pred cHHHHHHhCCCCCCeecCCCCCHHHHHHHhcCcccHHHHHHHHHHHHh
Q 026734 184 TPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231 (234)
Q Consensus 184 TprE~aRLQgFPddf~fp~~~s~~q~ykqiGNAV~v~vv~~La~~Ll~ 231 (234)
||||+||||||||+|.|+..++.+++|+||||||||+|+++|++.|++
T Consensus 296 T~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l~~ 343 (343)
T 1g55_A 296 TPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE 343 (343)
T ss_dssp CHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHHHC
T ss_pred CHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHhC
Confidence 999999999999999998657999999999999999999999999974
No 4
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.80 E-value=9.9e-20 Score=174.26 Aligned_cols=112 Identities=29% Similarity=0.417 Sum_probs=76.2
Q ss_pred cccCCChhHH---hh---------hcCcceeeccCCCCCcccccceeeeecCCcceeeecCCC-CCCCCcc----ccCCC
Q 026734 117 DHFLVPLSLI---ER---------WGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPK-NKGKASS----LKEQH 179 (234)
Q Consensus 117 ~~y~v~~~~l---~k---------~g~~~DIV~p~s~~s~cFTksY~r~~~GtgSvl~~~~~~-~~~k~~~----l~~~~ 179 (234)
++|+++++.. .+ .|+.++++.|++.+++|+|++ ++|..++..+++..... ..+...+ ....+
T Consensus 322 ~ky~l~~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~~~~~Ti~-a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~ 400 (482)
T 3me5_A 322 AKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLS-ARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHR 400 (482)
T ss_dssp GGGBCCHHHHHHHHHHHHC----------CEECTTSGGGGTCCBC-CC---CCSSSEECCCCCHHHHHHCTTCTTGGGGC
T ss_pred cccccCHHHHHHHHHHHHhhhcccCCcccceecCCcccccceeeE-EeeeccCcceeecccccccCCccccccccccCCC
Confidence 4577777652 22 255689999998889999999 56655555555432100 0000011 12357
Q ss_pred cccCcHHHHHHhCCCC----CCeecCCCCCHHHHHHHhcCcccHHHHHHHHHHHHh
Q 026734 180 LRYFTPREVANLHSFP----GDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231 (234)
Q Consensus 180 lR~lTprE~aRLQgFP----ddf~fp~~~s~~q~ykqiGNAV~v~vv~~La~~Ll~ 231 (234)
+|+|||+||+|||||| ++|.++ ++.+++|+|+||||||+|+++|++.|.+
T Consensus 401 ~R~lTprE~~rlqgFp~~~~~~~~~~--~s~~~~y~q~GNsV~v~v~~~i~~~l~~ 454 (482)
T 3me5_A 401 PRRLTPRECARLMGFEAPGEAKFRIP--VSDTQAYRQFGNSVVVPVFAAVAKLLEP 454 (482)
T ss_dssp CEECCHHHHHHHHTSSCTTCCCSCCC--SCHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHcCCCCccccceecc--CCHHHHHHHcCCccChHHHHHHHHHHHH
Confidence 8999999999999999 466665 6999999999999999999999999964
No 5
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.74 E-value=1.9e-18 Score=159.88 Aligned_cols=85 Identities=24% Similarity=0.280 Sum_probs=69.5
Q ss_pred ccccceeeeecCCcceeeecCCCCC----CCCccccCCCcccCcHHHHHHhCCCCCCeecCCCCCHHHHHHHhcCcccHH
Q 026734 145 CFTKSYYRYVKGTGSLLATVQPKNK----GKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIA 220 (234)
Q Consensus 145 cFTksY~r~~~GtgSvl~~~~~~~~----~k~~~l~~~~lR~lTprE~aRLQgFPddf~fp~~~s~~q~ykqiGNAV~v~ 220 (234)
.++..|+|+.++..|.+++..+... ...+++|+.+.|.||+||+||||||||+|.|. ++.+++|+||||||||+
T Consensus 277 ~~~~~~~Rl~~d~ps~Ti~~~~~~~~g~~~~~r~~HP~~~R~lTvRE~ARlQsFPD~f~f~--g~~~~~~~qIGNAVPp~ 354 (376)
T 3g7u_A 277 DKISRSTRLDPNGFCPTLRAGTARDKGSFQAVRPIHPYHPRVITPREAARLQGFPDWFRFH--VTKWHSFRQIGNSVSPI 354 (376)
T ss_dssp CTTTCCBBCCTTSCBCCC-------------CCCBCSSSSSBCCHHHHHHHHTCCTTCCCC--SSHHHHHHHHHTSCCHH
T ss_pred ccCCceeecCcccCCCceecCcCCCCCcccCccccCCccCcCCCHHHHHHhCCCCcceEEC--CChHHhheeeecCCCHH
Confidence 4566799999999998776543211 12466999999999999999999999999997 59999999999999999
Q ss_pred HHHHHHHHHHh
Q 026734 221 VVAPLLQYLFA 231 (234)
Q Consensus 221 vv~~La~~Ll~ 231 (234)
++++|++.|.+
T Consensus 355 la~aia~~I~~ 365 (376)
T 3g7u_A 355 VAEYILKGLYN 365 (376)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 6
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.72 E-value=7e-18 Score=149.54 Aligned_cols=56 Identities=30% Similarity=0.501 Sum_probs=50.9
Q ss_pred ccCCCcccCcHHHHHHhCCCCCCeecCCCCCHHHHHHHhcCcccHHHHHHHHHHHHh
Q 026734 175 LKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231 (234)
Q Consensus 175 l~~~~lR~lTprE~aRLQgFPddf~fp~~~s~~q~ykqiGNAV~v~vv~~La~~Ll~ 231 (234)
.++...|+|||||+||||||||+|.|+. .+.+++|+||||||||+|+++|++.|.+
T Consensus 267 ~~~~~~R~LT~rE~aRLQgFPd~f~f~~-~s~~~~ykqiGNAVpp~la~~I~~~I~~ 322 (331)
T 3ubt_Y 267 GKEHLYRRLTVRECARVQGFPDDFIFHY-ESLNDGYKMIGNAVPVNLAYEIAKTIKS 322 (331)
T ss_dssp TCGGGCCBCBHHHHHHHHTCCTTCCCCC-SBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCcCcCCCHHHHHHhCCCCCCCEeCC-CCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence 3556789999999999999999999974 4899999999999999999999999975
No 7
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.72 E-value=5.3e-18 Score=167.59 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=71.5
Q ss_pred ccccceeeeecCCcceeeecCCCCCCCCccccCCCcccCcHHHHHHhCCCCCCeecCCCCCHHHHHHHhcCcccHHHHHH
Q 026734 145 CFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAP 224 (234)
Q Consensus 145 cFTksY~r~~~GtgSvl~~~~~~~~~k~~~l~~~~lR~lTprE~aRLQgFPddf~fp~~~s~~q~ykqiGNAV~v~vv~~ 224 (234)
.+...|+++.++..+.+++... ......++|+.+.|+||||||||||||||+|.|. ++.+++|+||||||||+|+++
T Consensus 656 ~~~~~y~rl~~d~ps~TItt~~-~~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~--Gs~~~~ykQIGNAVpp~lA~a 732 (784)
T 4ft4_B 656 KSLKPFGRLWWDETVPTVVTRA-EPHNQVIIHPTQARVLTIRENARLQGFPDYYRLF--GPIKEKYIQVGNAVAVPVARA 732 (784)
T ss_dssp TCCCTTEECCTTCCCSCCCSCC-CSSSSEEECSSSSSBCCHHHHHHHTTCCTTCCCC--SCHHHHHHHHHHSCCHHHHHH
T ss_pred CcCccceeccCCCcccceeccc-cCCCCeecCCCCCcCCcHHHHHHHCCCCCCCEeC--CCHHHHHhhccCCCCHHHHHH
Confidence 3556688888887777665542 3445678999999999999999999999999997 599999999999999999999
Q ss_pred HHHHHHh
Q 026734 225 LLQYLFA 231 (234)
Q Consensus 225 La~~Ll~ 231 (234)
|++.|.+
T Consensus 733 Ig~~I~~ 739 (784)
T 4ft4_B 733 LGYCLGQ 739 (784)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999964
No 8
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.63 E-value=6.4e-17 Score=151.65 Aligned_cols=56 Identities=25% Similarity=0.387 Sum_probs=49.9
Q ss_pred cCCCcccCcHHHHHHhCCCCC-CeecCC---CCCHHHHHHHhcCcccHHHHHHHHHHHHh
Q 026734 176 KEQHLRYFTPREVANLHSFPG-DFQFPH---HLSLRQRYALLGNSLSIAVVAPLLQYLFA 231 (234)
Q Consensus 176 ~~~~lR~lTprE~aRLQgFPd-df~fp~---~~s~~q~ykqiGNAV~v~vv~~La~~Ll~ 231 (234)
.+.++|+||||||+||||||| +|.++. .++.+++|+|+||||+|+|+++|++.|++
T Consensus 331 ~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~ 390 (403)
T 4dkj_A 331 TQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEF 390 (403)
T ss_dssp ETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCC
T ss_pred cCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHH
Confidence 356799999999999999999 698852 26999999999999999999999999874
No 9
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.63 E-value=2e-16 Score=143.77 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=51.9
Q ss_pred cccCCCcccCcHHHHHHhCCCCCCeecCCCCCHHHHHHHhcCcccHHHHHHHHHHHHh
Q 026734 174 SLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231 (234)
Q Consensus 174 ~l~~~~lR~lTprE~aRLQgFPddf~fp~~~s~~q~ykqiGNAV~v~vv~~La~~Ll~ 231 (234)
.+++.+.|+||+||+||||||||+|.|+ ++.+++|+||||||||+|+++|++.|++
T Consensus 265 ~~~~~~~R~LT~rE~aRLQgFPd~f~f~--gs~~~~ykqIGNAVp~~l~~~Ia~~i~~ 320 (327)
T 2c7p_A 265 YLVNGKTRKLHPRECARVMGYPDSYKVH--PSTSQAYKQFGNSVVINVLQYIAYNIGS 320 (327)
T ss_dssp EEETTEEEECCHHHHHHHTTCCTTSCCC--SSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCcCCCHHHHHHHCCCCcCcEeC--CCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence 3457789999999999999999999998 5999999999999999999999999975
No 10
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.60 E-value=8.8e-16 Score=157.83 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=73.2
Q ss_pred cccccceeeeecCCc-ceeeecCCCCCCCCccccCCCcccCcHHHHHHhCCCCCCeecCCCCCHHHHHHHhcCcccHHHH
Q 026734 144 CCFTKSYYRYVKGTG-SLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVV 222 (234)
Q Consensus 144 ~cFTksY~r~~~Gtg-Svl~~~~~~~~~k~~~l~~~~lR~lTprE~aRLQgFPddf~fp~~~s~~q~ykqiGNAV~v~vv 222 (234)
..++..|+|+.|+.. +.+++.........+++|+.+.|.||+||+||||||||+|.|. ++..++|+||||||||+|+
T Consensus 910 ~~~~~~ygRL~wd~p~~~~it~~~~~~~~g~~~Hp~~~R~lt~rE~arlQ~fPd~~~f~--g~~~~~~~qiGNaVp~~~~ 987 (1002)
T 3swr_A 910 NHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLF--GNILDKHRQVGNAVPPPLA 987 (1002)
T ss_dssp GGGTTTTCBCCTTSCBSSCCSSCCTTCTTCCCBCSSSSSBCCHHHHHHHTTCCTTCCCC--SSHHHHHHHHHHSCCHHHH
T ss_pred cccCccceeeccCCCCCeeEecCCCCCCCCcccCcccccCCCHHHHHHhCCCCcceEEc--CChHHHheeeeccCCHHHH
Confidence 346778999999988 5555543222345788999999999999999999999999997 4999999999999999999
Q ss_pred HHHHHHHHh
Q 026734 223 APLLQYLFA 231 (234)
Q Consensus 223 ~~La~~Ll~ 231 (234)
++|++.|.+
T Consensus 988 ~~i~~~i~~ 996 (1002)
T 3swr_A 988 KAIGLEIKL 996 (1002)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 11
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.59 E-value=1.1e-15 Score=160.56 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=67.2
Q ss_pred cccceeeeecCCc-ceeeecCCCCCCCCccccCCCcccCcHHHHHHhCCCCCCeecCCCCCHHHHHHHhcCcccHHHHHH
Q 026734 146 FTKSYYRYVKGTG-SLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAP 224 (234)
Q Consensus 146 FTksY~r~~~Gtg-Svl~~~~~~~~~k~~~l~~~~lR~lTprE~aRLQgFPddf~fp~~~s~~q~ykqiGNAV~v~vv~~ 224 (234)
++..|+|+.++.. +.+++..........++|+.+.|.||+||+||||||||+|.|. ++.+++|+||||||||+|+++
T Consensus 1222 ~~~~ygRL~~d~p~sttiT~~~~~~k~g~~iHP~q~R~LTVREaARLQsFPDdF~F~--Gs~t~~yrQIGNAVPPlLAkA 1299 (1330)
T 3av4_A 1222 WAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFF--GNILDRHRQVGNAVPPPLAKA 1299 (1330)
T ss_dssp GTTTTCBCCTTSCBSSCCSSCCTTSSSCCCBCSSSSSBCCHHHHHHHTTCCTTCCCC--SSHHHHHHHHHHSCCHHHHHH
T ss_pred ccccceecccCCCCCceEeCCcccCCCCcccCccccccCCHHHHHHhcCCCCCeEEC--CCHhhhhEEeEeCcCHHHHHH
Confidence 4556888888764 3333321001123467999999999999999999999999998 489999999999999999999
Q ss_pred HHHHHHh
Q 026734 225 LLQYLFA 231 (234)
Q Consensus 225 La~~Ll~ 231 (234)
||+.|.+
T Consensus 1300 IA~~I~~ 1306 (1330)
T 3av4_A 1300 IGLEIKL 1306 (1330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999975
No 12
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.55 E-value=1.3e-15 Score=137.17 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=52.7
Q ss_pred ccCCCcccCcHHHHHHhCCCCCCeecCCCCCHHHHHHHhcCcccHHHHHHHHHHHHh
Q 026734 175 LKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 231 (234)
Q Consensus 175 l~~~~lR~lTprE~aRLQgFPddf~fp~~~s~~q~ykqiGNAV~v~vv~~La~~Ll~ 231 (234)
+++.+.|+||+||+||||||||+|.|+...+.+++|+||||||||+|+++|++.|.+
T Consensus 234 ~~~~~~R~lt~rE~arlqgFPd~~~~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~ 290 (295)
T 2qrv_A 234 FMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKE 290 (295)
T ss_dssp EETTEEECCCHHHHHHHHTCCTTTTCCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGG
T ss_pred ccCCCcCCCCHHHHHHHcCCCHHHeeCCCcCHHHHhccEecCcCHHHHHHHHHHHHH
Confidence 456778999999999999999999998767889999999999999999999999875
Done!