BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026737
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + VG + Y
Sbjct: 150 SAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPY 209
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 210 GAFIDIG------GVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLST 263
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 264 KQLEPEP 270
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFVG------RDYG 68
L G + KVI+ +++ +V S + + ++Y++ N+ E + V DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDEV++K++K DREK R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLK 260
Query: 129 QLEEDP 134
QL +DP
Sbjct: 261 QLSDDP 266
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-- 65
K+IH S++ V ++ +EE +++ K + W ++S + N VG+
Sbjct: 313 NKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWMEFSKKYNKGSHVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ ++ +G+EV V+++D ++
Sbjct: 373 SITDFGIFIGLEGS-----IDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL+EDP
Sbjct: 428 RISLGIKQLQEDPF 441
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + +K+++ + E ++ K D W K S R + GR DYG F+ +
Sbjct: 238 GDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ V+V ++ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKN 351
Query: 133 DPLLE 137
+P +E
Sbjct: 352 NPWME 356
>sp|P37985|RS1_DICD3 30S ribosomal protein S1 OS=Dickeya dadantii (strain 3937) GN=rpsA
PE=3 SV=2
Length = 557
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQG 146
+KQL EDP + + K P+G
Sbjct: 258 GLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---IFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K + +++ ++V I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D I+D +++ GDE+ K +DR+ ++LSI+ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVSLSIRAKDE 524
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQG 146
+KQL EDP + + K P+G
Sbjct: 258 GLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEE 132
+ +E
Sbjct: 520 RAKDE 524
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQG 146
+KQL EDP + + K P+G
Sbjct: 258 GLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEE 132
+ +E
Sbjct: 520 RAKDE 524
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQG 146
+KQL EDP + + K P+G
Sbjct: 258 GLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEE 132
+ +E
Sbjct: 520 RAKDE 524
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQG 146
+KQL EDP + + K P+G
Sbjct: 258 GLKQLGEDPWV-AIAKRYPEG 277
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEE 132
+ +E
Sbjct: 520 RAKDE 524
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 99 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 152
Query: 126 SIKQLEEDPLLETLEKVIPQG 146
+KQL EDP + + K P+G
Sbjct: 153 GLKQLGEDPWV-AIAKRYPEG 172
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 16/116 (13%)
Query: 30 VIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 227 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLE-----GG 281
Query: 82 LTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 282 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 336
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 133 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 192
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 193 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246
Query: 133 DP 134
+P
Sbjct: 247 NP 248
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea
GN=RPS1 PE=1 SV=1
Length = 411
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE +LV S + A+ + +++ + + G + YGAFI +
Sbjct: 229 IPLKFVEVDEEQSRLVMSNRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDIG------ 281
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 282 GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 335
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K DR+K R++L
Sbjct: 200 DYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSL 253
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 254 GMKQLADDP 262
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 16/139 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR--- 65
K+IH +G + V V++ +EE +++ K W +++ + ++ G+
Sbjct: 310 KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRS 369
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+
Sbjct: 370 ITDFGMFIGLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERE 423
Query: 122 RITLSIKQLEEDPLLETLE 140
RI+L IKQLE DP +E +E
Sbjct: 424 RISLGIKQLEGDPFMEFVE 442
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + K++ K D W K R V G+ DYG F+ L
Sbjct: 234 GDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLE 293
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH SE+ W ++I ++ G+EV V V++ID E+ RI+L IKQ +
Sbjct: 294 -----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKR 347
Query: 133 DPLLETLEK 141
+P E EK
Sbjct: 348 NPWQEFAEK 356
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 469 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 519
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3
SV=1
Length = 559
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 14/133 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR--- 65
K+IH G + V+V+ +EE +++ K W +SS+ N D G
Sbjct: 314 KNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERER 428
Query: 123 ITLSIKQLEEDPL 135
I+L IKQLE+DP
Sbjct: 429 ISLGIKQLEDDPF 441
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LS+K + D + +++
Sbjct: 474 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKE 533
Query: 142 VIPQGLEPYLKSFYKKMDDVRITRQG 167
+ Q +E + + ++ QG
Sbjct: 534 LRKQEVESAGPTTIGDLIRAQMENQG 559
>sp|P57395|RS1_BUCAI 30S ribosomal protein S1 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsA PE=3 SV=1
Length = 558
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + ++V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ +K++K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI-LNEGDEVRVKVIKIDREKSRIT 124
D+G FI L + GLVH+S++SW + + + + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLN-----GGIDGLVHLSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERIS 430
Query: 125 LSIKQLEEDPL 135
L IKQLEEDP
Sbjct: 431 LGIKQLEEDPF 441
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I++K+++ + E ++ K + W S R E GR DYG F+ +
Sbjct: 238 GDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ D V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKI 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|Q44653|RS1_BUCAP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=rpsA PE=3 SV=1
Length = 559
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 7/82 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VK++K D+E++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQGL 147
+KQL EDP + + P+G+
Sbjct: 258 GLKQLGEDPWI-AISNRYPEGI 278
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS--SRVNVEDIFVG---- 64
K+IH +I+ V V+ +EE +++ K N + S + + I V
Sbjct: 313 NKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L+ + GLVH+S++SW + ++ +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGLK-----GGIDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 428 RISLGIKQLEEDPF 441
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 24/127 (18%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVGR-----DYGA 69
G I+VK+++ ++E ++ K A+ N+Y + + GR DYG
Sbjct: 237 VGDEINVKILKFDKERTRVSLGLKQLGEDPWIAISNRYPEGIKLS----GRVTNLTDYGC 292
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSI 127
F+ + + GLVHVSE+ W ++I ++ + V V V+ ID E+ RI+L +
Sbjct: 293 FVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGL 346
Query: 128 KQLEEDP 134
KQ + +P
Sbjct: 347 KQCKINP 353
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 14/124 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
+ V VI+ NEE K++ K W K V G+ DYG FI L+ D
Sbjct: 257 VKVMVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKMTGKVTNFADYGVFIELK--D 314
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
GL GLVH SE+SW Q+ R L G EV V+++D EK R++LSIKQ +++PL+
Sbjct: 315 GL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLI 371
Query: 137 ETLE 140
+ E
Sbjct: 372 KFAE 375
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK + E RI+L
Sbjct: 220 DYGAFIDLGSVDGLLHLT------DISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISL 273
Query: 126 SIKQLEEDP 134
+KQL+ +P
Sbjct: 274 GMKQLDYNP 282
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L +L G++H +++W D ++ +GDEV KV+ I+ EK +I+
Sbjct: 392 DFGIFVALS-----DNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQIS 446
Query: 125 LSIKQLEEDP 134
L IKQL +P
Sbjct: 447 LGIKQLTPNP 456
>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4
Length = 307
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ VG + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I+ + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDP 134
+ VK++ ++ E+ R++LS+K P
Sbjct: 243 IEVKILDLNEEEGRVSLSLKATVPGP 268
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++L G EV KV+K D+EK R++L
Sbjct: 205 DYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQGLEPYLK 152
+KQL EDP L + PQG + K
Sbjct: 259 GMKQLGEDP-WSGLTRRYPQGTRLFGK 284
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRI 123
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID + RI
Sbjct: 290 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRI 343
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 344 SLGMKQCQANP 354
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
+ G + SE + D ++D+ L EGDEV ++ +DR+ I LS+K + E L
Sbjct: 474 EVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRSIKLSVKAKDAKESREALN 533
Query: 141 KV 142
V
Sbjct: 534 SV 535
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 45 KDAVWNKYSSRVNVE-DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
++ VWNK VE ++ D+GAF+ + DGL +HVSE+SW ++ D+L
Sbjct: 474 EETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGL------LHVSEISWGRVEKPADVL 527
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
GD+++V V+ +D+E +++LS+K+L E+P
Sbjct: 528 KIGDKIKVYVLSVDKENKKLSLSVKKLTENP 558
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I V V+ ++E KKL S K WN + V + +G+ D+GAF+ L
Sbjct: 530 GDKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVLGKVIRFADFGAFVKLE 589
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P + GLVH+SE+S I D LN G+E++ K++++ E+ +I LSI+++EE
Sbjct: 590 -P----GVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIREVEE 642
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L DGL VHVSE+S D +++ D+L +GD+V VK++ +D EK RI+L
Sbjct: 243 DFGAFVDLGGVDGL------VHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISL 296
Query: 126 SIKQLEEDPLLETLEKV 142
SIK + P E +++
Sbjct: 297 SIKATQRGPWDEAADQI 313
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VK++ + E ++ S K W++ + ++ + G +D+GAF+ +
Sbjct: 277 GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI- 335
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 336 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYG FI LR DGL GLVH SE+SW Q+ R L G EV V+++D EK R++
Sbjct: 302 DYGVFIELR--DGL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVS 356
Query: 125 LSIKQLEEDPLLETLE 140
LSIKQ +E+PL++ E
Sbjct: 357 LSIKQCQENPLIKFAE 372
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK D + RI+L
Sbjct: 217 DYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISL 270
Query: 126 SIKQLEEDPLLETLEKVIPQG 146
IKQL+ +P E +++ P G
Sbjct: 271 GIKQLDSNP-WEAIKEEFPVG 290
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++
Sbjct: 389 DFGIFVALG-----NNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVS 443
Query: 125 LSIKQLEEDPLLE 137
L +KQL +P E
Sbjct: 444 LGVKQLSPNPYQE 456
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 20/142 (14%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVN 57
+S SH ++P + E G + VKV+ + + +++ S KD + WN+ +V
Sbjct: 219 LSHSH-VEKPSDVVEE------GQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVK 271
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVK 112
D+ G +GAF+ + L + GLVH+S++S I ++L EG V+VK
Sbjct: 272 PGDVLEGTVQRLVSFGAFVEI-----LPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVK 326
Query: 113 VIKIDREKSRITLSIKQLEEDP 134
V+ ++ + RI+LS+++LEE P
Sbjct: 327 VLDVNENEERISLSMRELEETP 348
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 18/134 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAF 70
G +S+ V++ + + +++ S + V ++ +++ + V + G+ D+GAF
Sbjct: 145 GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAF 204
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSIK
Sbjct: 205 VDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDT 258
Query: 131 EEDPLLETLEKVIP 144
P + EKV P
Sbjct: 259 LPGPWNQIGEKVKP 272
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
GN=rpsA PE=3 SV=2
Length = 568
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL +HV++++W + +ILN G +V+V++I+I++E RI+L
Sbjct: 210 DYGAFVDLGGIDGL------LHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISL 263
Query: 126 SIKQLEEDP 134
+KQLE DP
Sbjct: 264 GMKQLESDP 272
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G FI L DG + G+VH+S++ W+ + + + N+GD VR V+ +D +K RI+
Sbjct: 382 EFGLFIGL---DG--DVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERIS 436
Query: 125 LSIKQLEEDPLLET 138
L IKQL D + E
Sbjct: 437 LGIKQLGRDAVGEA 450
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G + V++I+ N+E MK+L D + KY + DYGAF+ L
Sbjct: 244 GQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELE 303
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GL+H+SE+SW +++ IL+ EV V V+++D K RI+L +KQ E
Sbjct: 304 -----PGIEGLIHISEMSW-TKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLE 357
Query: 133 DP 134
+P
Sbjct: 358 NP 359
>sp|P80870|GS13_BACSU General stress protein 13 OS=Bacillus subtilis (strain 168) GN=yugI
PE=1 SV=3
Length = 130
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 10/87 (11%)
Query: 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
+++ V ++ G+ YGAF+ L GLVH+SEV+ ++DI + L+ GD
Sbjct: 2 AAKFEVGSVYTGKVTGLQAYGAFVALD-----EETQGLVHISEVTHGFVKDINEHLSVGD 56
Query: 108 EVRVKVIKIDREKSRITLSIKQLEEDP 134
EV+VKV+ +D EK +I+LSI+ + P
Sbjct: 57 EVQVKVLAVDEEKGKISLSIRATQAAP 83
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
+ V VI+ +E+ K++ K W+ V G+ DYG F+ L+ D
Sbjct: 254 VKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKKMTGKVTNFADYGVFLELK--D 311
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
GL GLVH SE+SW Q+ R +L G EV V+++D EK R++LSIKQ +E+PL+
Sbjct: 312 GL---EGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQCQENPLI 368
Query: 137 ETLE 140
+ E
Sbjct: 369 KFAE 372
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK D + RI+L
Sbjct: 217 DYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISL 270
Query: 126 SIKQLEEDP 134
IKQL+ +P
Sbjct: 271 GIKQLDSNP 279
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++
Sbjct: 389 DFGIFVVLG-----NNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVS 443
Query: 125 LSIKQLEEDP 134
L IKQL +P
Sbjct: 444 LGIKQLLPNP 453
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
+ V VI+ +E+ K++ K W+ V G+ DYG F+ L+ D
Sbjct: 254 VKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKKMTGKVTNFADYGVFLELK--D 311
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
GL GLVH SE+SW Q+ R +L G EV V+++D EK R++LSIKQ +E+PL+
Sbjct: 312 GL---EGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQCQENPLI 368
Query: 137 ETLE 140
+ E
Sbjct: 369 KFAE 372
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK D + RI+L
Sbjct: 217 DYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISL 270
Query: 126 SIKQLEEDP 134
IKQL+ +P
Sbjct: 271 GIKQLDSNP 279
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++
Sbjct: 389 DFGIFVVLG-----NNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVS 443
Query: 125 LSIKQLEEDP 134
L IKQL +P
Sbjct: 444 LGIKQLSPNP 453
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYG FI L+ DGL GLVH SE+SW Q+ R L G EV V+++D EK R++
Sbjct: 302 DYGVFIELK--DGL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVS 356
Query: 125 LSIKQLEEDPLLETLE 140
LSIKQ +E+PL + E
Sbjct: 357 LSIKQCQENPLTKFAE 372
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L+ +V+V VIK D + RI+L
Sbjct: 217 DYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLDFNQKVKVMVIKFDEKNKRISL 270
Query: 126 SIKQLEEDPLLETLEKVIPQG 146
IKQL+ +P E +++ P G
Sbjct: 271 GIKQLDSNP-WEAIKEEFPVG 290
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++
Sbjct: 389 DFGIFVALG-----NNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVS 443
Query: 125 LSIKQLEEDPLLE 137
L IKQL +P E
Sbjct: 444 LGIKQLSPNPYQE 456
>sp|B6J6S7|PNP_COXB1 Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain CbuK_Q154) GN=pnp PE=3 SV=1
Length = 696
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|B6J0K5|PNP_COXB2 Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain CbuG_Q212) GN=pnp PE=3 SV=1
Length = 696
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|Q83D87|PNP_COXBU Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=pnp PE=3 SV=1
Length = 696
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|A9ND62|PNP_COXBR Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain RSA 331 / Henzerling II) GN=pnp PE=3 SV=1
Length = 696
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|A9KFK6|PNP_COXBN Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain Dugway 5J108-111) GN=pnp PE=3 SV=1
Length = 696
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|A1WXU7|PNP_HALHL Polyribonucleotide nucleotidyltransferase OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=pnp PE=3 SV=1
Length = 702
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 50/68 (73%), Gaps = 6/68 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+++ L GLVH+S++S + ++++ D L+EGD VRVKV+++DR+ RI L
Sbjct: 641 DFGAFVNI-----LPGRDGLVHISQISNNRVENVADELSEGDSVRVKVLEVDRQ-GRIRL 694
Query: 126 SIKQLEED 133
S+K +EE+
Sbjct: 695 SMKAVEEE 702
>sp|B4SQR6|PNP_STRM5 Polyribonucleotide nucleotidyltransferase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=pnp PE=3 SV=1
Length = 702
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S D ++ + D+L EGD V+VKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSDRVEKVGDVLKEGDVVKVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
S+K +EE
Sbjct: 689 SMKAVEE 695
>sp|B2FN86|PNP_STRMK Polyribonucleotide nucleotidyltransferase OS=Stenotrophomonas
maltophilia (strain K279a) GN=pnp PE=3 SV=1
Length = 702
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S D ++ + D+L EGD V+VKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSDRVEKVGDVLKEGDVVKVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
S+K +EE
Sbjct: 689 SMKAVEE 695
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ L DGL VHVSE+SW I +++ GDEV V+V+ +D ++ R++L
Sbjct: 221 NFGAFVDLGGVDGL------VHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSL 274
Query: 126 SIKQLEEDP 134
S+K +EDP
Sbjct: 275 SLKATQEDP 283
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++V+V+ + + +++ S K + W ++ + I G+ +GAF+ R
Sbjct: 255 GDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFV--R 312
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+G+ GLVH+SE++ ++ ++ GD+ VKVI ID E+ RI+LS+KQ ED
Sbjct: 313 VEEGI---EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL +HV++++W + ++L G V+VK+IKI+ E RI+L
Sbjct: 213 DYGAFVDLGGIDGL------LHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISL 266
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 267 GMKQLLDDP 275
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VK+I+ N E ++ K D W ++ + F GR DYGAF+ L
Sbjct: 247 GQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELE 306
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL+HVSE+SW I++ EV V+V+++D K RI+L +KQ +
Sbjct: 307 -----PGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRN 361
Query: 134 P 134
P
Sbjct: 362 P 362
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ L DG + G+VH+S++ W L + + D +GD V+ V+ +D EK RI+
Sbjct: 385 EFGLFLGL---DG--DVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERIS 439
Query: 125 LSIKQLEEDPLLE 137
L +KQLE DP E
Sbjct: 440 LGVKQLEGDPFAE 452
>sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC
7942) GN=rpsA PE=3 SV=1
Length = 295
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLY 80
L G ++V ++ N KKLV SE+ A + V + G+ G F D L
Sbjct: 155 LKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVD-LG 213
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
T L+ ++++S + D+ I GD ++ V+ ID K RI+LS K LE P E LE
Sbjct: 214 GATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHP-GEILE 272
Query: 141 KV 142
V
Sbjct: 273 NV 274
>sp|P37560|YABR_BACSU Uncharacterized protein YabR OS=Bacillus subtilis (strain 168)
GN=yabR PE=3 SV=1
Length = 128
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ L P G TGLVH+SEV+ + ++DI D L GD+V VKVI ++++ +I L
Sbjct: 18 NFGAFVEL--PGGS---TGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKD-GKIGL 71
Query: 126 SIKQLEEDPLLETLEKVIP-QGLEPYLKSFYKKMDD 160
SIK+ ++ P P + E + F K +D
Sbjct: 72 SIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSED 107
>sp|A1ST53|PNP_PSYIN Polyribonucleotide nucleotidyltransferase OS=Psychromonas
ingrahamii (strain 37) GN=pnp PE=3 SV=1
Length = 698
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 21/136 (15%)
Query: 7 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR- 65
C+E +I EI T I + QA++ + ++ ++ V V I+ G+
Sbjct: 579 CEETGTTI-EIEDDGTVKIAATSGEQADDAINRI---------KALTAEVEVGTIYTGKV 628
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
D+GAF+++ L GLVH+S++ + +Q + D L EG EV+VKV+++DR+
Sbjct: 629 VRLADFGAFVNI-----LPGKDGLVHISQICEERVQKVSDHLKEGQEVKVKVLEVDRQ-G 682
Query: 122 RITLSIKQLEEDPLLE 137
R+ LSIK+ E E
Sbjct: 683 RVRLSIKEAAEKTTAE 698
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=rpsA PE=3 SV=2
Length = 570
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAFI + + GL+HVSE+SW I D +++N+GDEV V V+ I +++ +I+L
Sbjct: 318 YGAFIEIE-----EGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISL 372
Query: 126 SIKQLEEDPLLETLEKVIPQGL 147
+KQ E +P + +E+ P GL
Sbjct: 373 GLKQTEHNP-WDNIEEKYPIGL 393
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 19/119 (15%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF-VGRD----------YGAFI 71
G+ + ++ ++E KK+ K N + +E +F VG D +GAF+
Sbjct: 440 GNTVEAVILSVDKESKKITLGVKQLTPNPWDE---IEAMFPVGSDISGIVTKITAFGAFV 496
Query: 72 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
L+ + GL+HVS++S I DIL+ GD+V KVIK+D + +++LSIK+
Sbjct: 497 ELQ-----NGIEGLIHVSKLSDKPFAKIEDILSIGDKVSAKVIKLDPDHKKVSLSIKEF 550
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 19/137 (13%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGA 69
G + K+++ N + + +V S ++ + + S+ +E I +G D+G
Sbjct: 176 VGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGV 235
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ L DG+ GL+H+++++W I+ +++ E+ V ++ +D+EK R+ L +KQ
Sbjct: 236 FLDL---DGI---DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQ 289
Query: 130 LEEDPLLETLEKVIPQG 146
E +P E +EK P G
Sbjct: 290 KEHNP-WEDIEKKYPPG 305
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
+YGAF+ L + GL+H+S++SW + ++ +G+ V ++ +D+E +IT
Sbjct: 404 NYGAFVELE-----PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKIT 458
Query: 125 LSIKQLEEDPLLETLEKVIPQG 146
L +KQL +P E +E + P G
Sbjct: 459 LGVKQLTPNPWDE-IEAMFPVG 479
>sp|Q3IJ73|PNP_PSEHT Polyribonucleotide nucleotidyltransferase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=pnp PE=3 SV=1
Length = 708
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 31/149 (20%)
Query: 5 HSCKEPQKSIHE-IAKG---------LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS- 53
++ K PQK I E I KG TG+ I + ++ K+ ++ ++ N S
Sbjct: 558 YTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEI----GDDGTIKIAATDGESAANAISR 613
Query: 54 -----SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
+ + V I+ G+ D+GAF+++ L GLVH+S++S + + ++ D L
Sbjct: 614 IEQLTAELEVGTIYEGKVVRIVDFGAFVNI-----LPGKDGLVHISQISTERVNNVTDHL 668
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+EG EV+VKV+++DR+ R+ LSIK+ E
Sbjct: 669 SEGQEVKVKVLEVDRQ-GRVRLSIKEAME 696
>sp|Q21H65|PNP_SACD2 Polyribonucleotide nucleotidyltransferase OS=Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pnp
PE=3 SV=1
Length = 722
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF++ L GLVH+S+++ + +Q++ D L EG ++ VK + ID ++ RI L
Sbjct: 646 DFGAFVNF-----LPGKDGLVHISQIAHERVQNVSDYLKEGQDIEVKCMDID-QRGRIKL 699
Query: 126 SIKQLEEDPLLETLEKVIPQGLE 148
SIK+L P ET E +G E
Sbjct: 700 SIKELLPAPEAETAEAPAGEGEE 722
>sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=pnp PE=3 SV=1
Length = 692
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 11/83 (13%)
Query: 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
++ V V ++ G+ D+GAF+ + L GLVH+SE++ + ++D+ D++NEGD
Sbjct: 614 TAEVEVGAVYTGKVKTIKDFGAFVEI-----LPGTDGLVHISELALERVKDVTDVVNEGD 668
Query: 108 EVRVKVIKIDREKSRITLSIKQL 130
+ VKV+ +D + RI LS K L
Sbjct: 669 TIEVKVLDVDN-RGRIRLSRKAL 690
>sp|Q5GXV3|PNP_XANOR Polyribonucleotide nucleotidyltransferase OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=pnp PE=3 SV=1
Length = 704
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVEKVGDKLKEGDLVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
SIK +EE
Sbjct: 689 SIKAVEE 695
>sp|B2SVJ9|PNP_XANOP Polyribonucleotide nucleotidyltransferase OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=pnp PE=3 SV=1
Length = 704
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVEKVGDKLKEGDLVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
SIK +EE
Sbjct: 689 SIKAVEE 695
>sp|Q2P0X5|PNP_XANOM Polyribonucleotide nucleotidyltransferase OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=pnp PE=3 SV=1
Length = 704
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVEKVGDKLKEGDLVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
SIK +EE
Sbjct: 689 SIKAVEE 695
>sp|Q8PJ59|PNP_XANAC Polyribonucleotide nucleotidyltransferase OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=pnp PE=3 SV=1
Length = 704
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVEKVGDKLKEGDLVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
SIK +EE
Sbjct: 689 SIKAVEE 695
>sp|Q3BRP9|PNP_XANC5 Polyribonucleotide nucleotidyltransferase OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=pnp PE=3 SV=1
Length = 704
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVEKVGDKLKEGDLVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
SIK +EE
Sbjct: 689 SIKAVEE 695
>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1b PE=3 SV=1
Length = 305
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 13/130 (10%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRF 75
L G ++ +++AN++ KLV +++ + ++ +I+ G+ YG F+ +
Sbjct: 156 LVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIE- 214
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP- 134
+TGL+HVS+VS + + + G + V V +ID K+RI+LS + LE P
Sbjct: 215 -----GVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPG 269
Query: 135 -LLETLEKVI 143
L+E ++++
Sbjct: 270 ELVEKFDEMM 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,860,127
Number of Sequences: 539616
Number of extensions: 3424577
Number of successful extensions: 12211
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 11193
Number of HSP's gapped (non-prelim): 997
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)