Query 026737
Match_columns 234
No_of_seqs 246 out of 2184
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 20:54:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 99.9 1.3E-23 4.3E-28 184.6 12.1 164 21-229 41-228 (285)
2 1kl9_A Eukaryotic translation 99.8 2.3E-21 7.8E-26 159.8 0.7 110 56-171 13-140 (182)
3 2khi_A 30S ribosomal protein S 99.7 2.7E-18 9.2E-23 131.5 6.7 89 48-141 20-114 (115)
4 3go5_A Multidomain protein wit 99.7 3.2E-16 1.1E-20 137.4 11.8 104 21-139 113-226 (285)
5 2a19_A EIF-2- alpha, eukaryoti 99.7 3.5E-17 1.2E-21 134.0 4.9 87 57-147 14-105 (175)
6 2cqo_A Nucleolar protein of 40 99.6 9.4E-17 3.2E-21 123.7 5.1 88 48-139 12-106 (119)
7 2k4k_A GSP13, general stress p 99.6 5.7E-16 2E-20 121.0 7.9 78 54-136 3-85 (130)
8 2khj_A 30S ribosomal protein S 99.6 2.9E-16 9.8E-21 119.0 5.8 86 42-132 12-105 (109)
9 1luz_A Protein K3, protein K2; 99.6 8.4E-16 2.9E-20 112.2 7.9 76 54-133 7-87 (88)
10 2eqs_A ATP-dependent RNA helic 99.6 1E-15 3.6E-20 114.8 8.2 82 53-138 7-94 (103)
11 2k52_A Uncharacterized protein 99.6 1.3E-14 4.4E-19 103.8 9.1 70 55-133 2-76 (80)
12 2khi_A 30S ribosomal protein S 99.6 1.1E-15 3.7E-20 116.9 2.7 89 125-230 11-115 (115)
13 1q8k_A Eukaryotic translation 99.5 3.5E-15 1.2E-19 131.9 4.7 87 56-146 11-102 (308)
14 3aev_A Translation initiation 99.5 9.2E-15 3.1E-19 127.5 6.2 87 56-146 9-100 (275)
15 1kl9_A Eukaryotic translation 99.4 8.3E-14 2.8E-18 114.6 6.2 85 103-233 13-104 (182)
16 3cw2_C Translation initiation 99.4 3.6E-14 1.2E-18 123.3 3.3 84 55-141 8-96 (266)
17 4aid_A Polyribonucleotide nucl 99.4 2.2E-14 7.4E-19 139.2 -0.2 101 31-138 603-716 (726)
18 2a19_A EIF-2- alpha, eukaryoti 99.4 4.2E-13 1.4E-17 109.8 6.9 84 104-233 14-104 (175)
19 3cdi_A Polynucleotide phosphor 99.3 9.7E-14 3.3E-18 135.0 0.0 101 31-138 593-706 (723)
20 1e3p_A Guanosine pentaphosphat 99.3 2.7E-14 9.1E-19 139.4 -5.4 103 31-140 631-752 (757)
21 1e3p_A Guanosine pentaphosphat 99.3 5.1E-14 1.8E-18 137.4 -5.3 113 66-231 626-755 (757)
22 2eqs_A ATP-dependent RNA helic 99.3 5.2E-12 1.8E-16 94.5 5.8 80 103-227 10-95 (103)
23 4ayb_E DNA-directed RNA polyme 99.2 5E-12 1.7E-16 103.6 3.0 82 49-136 72-175 (180)
24 2khj_A 30S ribosomal protein S 99.2 6.4E-12 2.2E-16 94.9 3.4 79 124-220 11-105 (109)
25 2cqo_A Nucleolar protein of 40 99.2 1.1E-11 3.8E-16 95.2 4.6 87 96-228 13-107 (119)
26 1q8k_A Eukaryotic translation 99.2 2.1E-11 7.1E-16 107.8 6.1 85 103-233 11-102 (308)
27 1wi5_A RRP5 protein homolog; S 99.2 2.8E-11 9.4E-16 92.7 5.6 76 53-132 16-97 (119)
28 1go3_E DNA-directed RNA polyme 99.2 4.6E-11 1.6E-15 98.3 7.0 79 50-134 73-172 (187)
29 3psi_A Transcription elongatio 99.1 2.8E-11 9.7E-16 123.0 6.5 73 53-130 897-975 (1219)
30 3cdi_A Polynucleotide phosphor 99.1 3.7E-12 1.3E-16 123.9 0.0 116 61-229 581-709 (723)
31 2k4k_A GSP13, general stress p 99.1 4.9E-11 1.7E-15 92.9 6.1 77 102-224 4-85 (130)
32 3aev_A Translation initiation 99.1 4.8E-11 1.6E-15 104.0 6.5 85 103-233 9-100 (275)
33 3bzc_A TEX; helix-turn-helix, 99.1 2.3E-11 7.9E-16 119.1 3.1 74 53-131 649-727 (785)
34 4aid_A Polyribonucleotide nucl 99.1 6.8E-12 2.3E-16 121.8 -0.8 114 66-232 598-722 (726)
35 3psf_A Transcription elongatio 99.1 1.6E-11 5.4E-16 123.1 0.0 73 54-131 901-979 (1030)
36 2nn6_I 3'-5' exoribonuclease C 99.0 4.1E-10 1.4E-14 94.4 7.3 77 54-130 77-163 (209)
37 3m7n_A Putative uncharacterize 99.0 7.4E-10 2.5E-14 90.7 7.3 70 55-130 55-134 (179)
38 3cw2_C Translation initiation 99.0 2E-10 6.7E-15 99.7 3.3 86 102-233 8-100 (266)
39 1luz_A Protein K3, protein K2; 99.0 4.4E-10 1.5E-14 81.7 4.4 71 103-221 9-87 (88)
40 2k52_A Uncharacterized protein 98.9 1.9E-09 6.6E-14 76.7 6.9 69 103-221 3-76 (80)
41 1y14_B B16, RPB7, DNA-directed 98.9 2.7E-09 9.1E-14 86.6 6.4 65 51-121 76-155 (171)
42 2b8k_G B16, DNA-directed RNA p 98.9 1.8E-09 6.2E-14 90.8 5.4 79 51-136 76-172 (215)
43 2c35_B Human RPB7, DNA-directe 98.8 3.5E-09 1.2E-13 85.9 6.1 71 52-129 75-165 (172)
44 2je6_I RRP4, exosome complex R 98.7 7.1E-09 2.4E-13 89.1 5.2 70 55-130 71-148 (251)
45 1hh2_P NUSA, N utilization sub 98.7 6.9E-09 2.4E-13 92.8 4.8 98 18-128 85-199 (344)
46 3h0g_G DNA-directed RNA polyme 98.7 4.4E-09 1.5E-13 85.5 2.2 68 49-122 75-157 (172)
47 2ba0_A Archeal exosome RNA bin 98.7 3.1E-08 1.1E-12 84.1 7.4 70 55-130 54-129 (229)
48 2bh8_A 1B11; transcription, mo 98.7 3.5E-08 1.2E-12 73.4 6.6 78 56-169 11-97 (101)
49 2z0s_A Probable exosome comple 98.6 2.1E-08 7.1E-13 85.4 5.0 70 55-130 63-141 (235)
50 1wi5_A RRP5 protein homolog; S 98.4 2.9E-07 9.8E-12 70.2 5.9 74 102-219 18-96 (119)
51 1go3_E DNA-directed RNA polyme 98.4 8.1E-07 2.8E-11 72.7 8.1 87 103-225 79-177 (187)
52 4ayb_E DNA-directed RNA polyme 98.4 6.3E-07 2.2E-11 73.0 7.3 86 103-224 79-175 (180)
53 3psi_A Transcription elongatio 98.3 5.3E-07 1.8E-11 91.9 6.4 73 101-218 898-975 (1219)
54 2id0_A Exoribonuclease 2; RNAs 98.2 1.5E-06 5.2E-11 83.8 7.0 69 55-127 555-642 (644)
55 2nn6_I 3'-5' exoribonuclease C 98.1 3.5E-06 1.2E-10 70.4 6.2 73 102-218 78-163 (209)
56 3psf_A Transcription elongatio 98.1 3.7E-07 1.3E-11 91.8 0.0 72 102-218 902-978 (1030)
57 3m7n_A Putative uncharacterize 98.1 5.8E-06 2E-10 67.4 6.4 68 103-218 56-134 (179)
58 2bx2_L Ribonuclease E, RNAse E 98.0 6.3E-06 2.2E-10 77.3 6.7 74 52-130 39-128 (517)
59 3ayh_B DNA-directed RNA polyme 98.0 5.6E-06 1.9E-10 68.8 5.6 61 53-119 76-160 (203)
60 2bh8_A 1B11; transcription, mo 98.0 7.6E-06 2.6E-10 60.6 5.0 70 22-96 13-99 (101)
61 1k0r_A NUSA; two component arr 98.0 2.5E-05 8.7E-10 70.1 9.0 83 50-140 120-213 (366)
62 3bzc_A TEX; helix-turn-helix, 97.9 2.4E-06 8.2E-11 83.8 1.5 71 103-219 652-727 (785)
63 2b8k_G B16, DNA-directed RNA p 97.9 2.7E-05 9.3E-10 65.2 7.6 91 103-231 81-179 (215)
64 2vnu_D Exosome complex exonucl 97.8 1.2E-05 4.2E-10 78.8 4.8 65 60-128 671-760 (760)
65 2je6_I RRP4, exosome complex R 97.8 3.8E-05 1.3E-09 65.8 6.9 74 102-218 71-148 (251)
66 2wp8_J Exosome complex exonucl 97.8 1.4E-05 4.7E-10 80.3 4.3 66 59-128 887-977 (977)
67 2ckz_B C25, DNA-directed RNA p 97.7 2E-05 6.8E-10 66.2 4.3 64 53-121 76-158 (218)
68 1y14_B B16, RPB7, DNA-directed 97.7 9.3E-05 3.2E-09 59.6 8.0 70 104-210 82-152 (171)
69 2nn6_H Exosome complex exonucl 97.7 1.9E-05 6.4E-10 69.6 4.0 69 55-129 92-175 (308)
70 2ba0_A Archeal exosome RNA bin 97.6 8.3E-05 2.8E-09 62.8 6.7 71 103-218 55-129 (229)
71 2z0s_A Probable exosome comple 97.6 8.9E-05 3E-09 62.8 5.9 74 103-218 64-141 (235)
72 2ja9_A Exosome complex exonucl 97.5 8.5E-05 2.9E-09 60.3 5.1 65 55-126 4-74 (175)
73 2c35_B Human RPB7, DNA-directe 97.5 0.00027 9.4E-09 56.8 7.9 70 104-210 80-152 (172)
74 2asb_A Transcription elongatio 97.3 0.00059 2E-08 58.2 8.0 67 56-130 5-82 (251)
75 3h0g_G DNA-directed RNA polyme 97.2 0.00023 7.9E-09 57.4 4.0 52 149-210 99-153 (172)
76 1hh2_P NUSA, N utilization sub 96.7 0.00017 5.9E-09 64.3 -1.1 91 101-216 85-199 (344)
77 2id0_A Exoribonuclease 2; RNAs 96.5 0.0053 1.8E-07 59.1 7.6 74 104-215 557-642 (644)
78 3ayh_B DNA-directed RNA polyme 96.5 0.013 4.3E-07 48.4 8.8 77 104-210 80-159 (203)
79 2ckz_B C25, DNA-directed RNA p 96.4 0.012 4.1E-07 49.1 8.4 75 104-210 80-155 (218)
80 2bx2_L Ribonuclease E, RNAse E 96.1 0.013 4.4E-07 54.9 7.8 76 99-209 39-115 (517)
81 2wp8_J Exosome complex exonucl 95.7 0.018 6.2E-07 57.9 7.3 80 106-216 887-977 (977)
82 2vnu_D Exosome complex exonucl 95.5 0.025 8.4E-07 55.5 7.1 66 149-216 684-760 (760)
83 2nn6_G Exosome complex exonucl 95.3 0.011 3.9E-07 51.3 3.6 66 55-127 124-194 (289)
84 2r7d_A Ribonuclease II family 94.9 0.038 1.3E-06 51.2 6.2 60 56-127 401-460 (469)
85 2nn6_H Exosome complex exonucl 94.7 0.012 4.2E-07 51.6 2.3 79 103-217 93-175 (308)
86 1k0r_A NUSA; two component arr 94.4 0.054 1.8E-06 48.5 5.7 72 105-224 130-209 (366)
87 2asb_A Transcription elongatio 92.5 0.16 5.4E-06 43.2 5.2 46 149-217 26-81 (251)
88 1jjg_A M156R; beta barrel, S1 92.0 0.44 1.5E-05 34.1 6.2 62 53-118 27-93 (102)
89 2ja9_A Exosome complex exonucl 88.6 1.2 4E-05 35.7 6.8 65 103-214 5-74 (175)
90 2r7d_A Ribonuclease II family 66.0 6.5 0.00022 36.1 4.8 42 149-210 409-451 (469)
91 2rf4_A DNA-directed RNA polyme 64.5 19 0.00064 29.4 6.9 64 52-120 123-203 (214)
92 2yty_A Cold shock domain-conta 61.3 8.4 0.00029 27.0 3.7 49 57-114 14-67 (88)
93 3d0f_A Penicillin-binding 1 tr 56.3 19 0.00066 25.6 5.0 53 55-112 30-93 (106)
94 3aqq_A Calcium-regulated heat 55.4 29 0.00099 26.7 6.1 49 58-116 59-114 (147)
95 2jpp_A Translational repressor 52.3 4.5 0.00016 27.4 0.9 29 190-218 7-37 (70)
96 2nn6_G Exosome complex exonucl 50.0 23 0.00078 30.4 5.3 24 192-215 168-194 (289)
97 1vpz_A Carbon storage regulato 49.4 5.3 0.00018 27.2 0.9 30 189-218 18-49 (73)
98 1wfq_A UNR protein; beta-barre 49.2 64 0.0022 22.4 8.6 50 57-115 14-68 (89)
99 2bti_A Carbon storage regulato 48.5 5.7 0.00019 26.3 0.9 29 190-218 9-39 (63)
100 1h95_A CSD, Y-box binding prot 46.5 42 0.0014 22.7 5.2 35 81-115 31-65 (79)
101 2k5n_A Putative cold-shock pro 42.5 74 0.0025 21.2 7.1 39 81-128 25-63 (74)
102 1c9o_A CSPB, cold-shock protei 38.3 72 0.0025 20.6 5.2 32 81-116 23-54 (66)
103 3i2z_B RNA chaperone, negative 37.6 52 0.0018 21.7 4.5 42 66-116 18-59 (71)
104 3a0j_A Cold shock protein; OB- 35.2 71 0.0024 21.1 4.9 32 81-116 23-54 (73)
105 1t3o_A Carbon storage regulato 34.8 7.6 0.00026 27.8 -0.1 29 189-217 27-57 (95)
106 3cam_A Cold-shock domain famil 34.3 95 0.0033 20.1 6.4 32 81-116 24-55 (67)
107 3ts2_A Protein LIN-28 homolog 31.8 1.4E+02 0.0049 22.5 6.8 42 81-128 39-80 (148)
108 3ulj_A LIN28B, DNA-binding pro 31.4 72 0.0025 22.3 4.6 32 81-116 38-69 (90)
109 1zc1_A Ubiquitin fusion degrad 30.8 50 0.0017 26.9 4.1 97 22-132 76-178 (208)
110 2ytx_A Cold shock domain-conta 28.5 46 0.0016 23.5 3.1 47 59-114 16-67 (97)
111 3i4o_A Translation initiation 27.2 31 0.0011 23.7 2.0 58 59-126 18-77 (79)
112 1nz9_A Transcription antitermi 24.7 1.1E+02 0.0036 19.0 4.1 19 110-128 22-40 (58)
113 2lss_A Cold shock-like protein 22.4 27 0.00093 23.1 0.0 31 81-115 27-57 (70)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.90 E-value=1.3e-23 Score=184.58 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=133.2
Q ss_pred CCCCEEEEEEEEEeCCCCEEEEEechhhHhhhhcCCCCCcEEEEE------EeeEEEEEecCCCcceeEEEEEceecccc
Q 026737 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR------DYGAFIHLRFPDGLYHLTGLVHVSEVSWD 94 (234)
Q Consensus 21 ~vG~~v~~~Vi~id~~~~~i~lS~k~~~~~~~~~~~~~G~iv~g~------~~G~fV~l~~~~g~~g~~glv~isels~~ 94 (234)
.+||+++|.|+ .|. .+++++|.+.. .+++|+++.|+ +|||||+++. ++.+||||+|+++|.
T Consensus 41 ~vGdevev~v~-~d~-~~r~iat~~~p-------~~~~G~~~~g~V~~v~~~~GaFVdiG~----~~~d~lvp~sel~~~ 107 (285)
T 3go5_A 41 TVGDTVKGFAY-TDM-KQKLRLTTLEV-------TATQDQFGWGRVTEVRKDLGVFVDTGL----PDKEIVVSLDILPEL 107 (285)
T ss_dssp CTTSEEEEEEE-ECT-TSCEEEECSCC-------CSCSSSCEEEEEEEEETTTEEEEECSC----TTCCEEEEGGGSCSS
T ss_pred ccCCEEEEEEE-ECC-CCCEEEecccc-------cccCCCEEEEEEEEEccCceEEEEECC----CCcEEEEEHHHCCcc
Confidence 59999999997 465 55677787643 37899999998 3899999961 148999999999997
Q ss_pred cccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeec-ccCcchhhhhccccccc-----c------ceee-eecCCceEE
Q 026737 95 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL-EEDPLLETLEKVIPQGL-----E------PYLK-SFYKKMDDV 161 (234)
Q Consensus 95 ~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~-~~~p~~~~~~~~~~~G~-----~------G~fV-~l~~gi~Gl 161 (234)
+.. .+++||.+.++ +.+|+ ++||.+|+|+. ..+||.....+ ++.|. + |+|| .+++|++||
T Consensus 108 ~~~----~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~-~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Gl 180 (285)
T 3go5_A 108 KEL----WPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLARPAYN-NMQNQNWPAIVYRLKLSGTFVYLPENNMLGF 180 (285)
T ss_dssp GGG----SCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCCCCCS-CCTTCEEEEEEEEEETTEEEEEETTTTEEEE
T ss_pred ccc----ccCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhhhhhhh-CCCCCEEEEEEEEEeCCcEEEEEeCCCeEEE
Confidence 542 36899999766 69998 79999999987 46899765555 56652 1 9999 999999999
Q ss_pred E-EccccccccccccccccccccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccchhHHHHhh
Q 026737 162 R-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNEYWNVFHET 229 (234)
Q Consensus 162 ~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~p~~~~~~~ 229 (234)
| +|+++ ..+++||+|+|+|+++|. |+||+|++...+|+..++.
T Consensus 181 ih~SEl~-------------------------~~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~~~~a~~ 228 (285)
T 3go5_A 181 IHPSERY-------------------------AEPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQM 228 (285)
T ss_dssp ECGGGCS-------------------------SCCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCCCHHHHH
T ss_pred EEHHHcc-------------------------ccCCCCCEEEEEEEEEECCCCeEEEEeChhhhhccchHHHH
Confidence 9 78762 147999999999999975 9999999998888877654
No 2
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.81 E-value=2.3e-21 Score=159.84 Aligned_cols=110 Identities=23% Similarity=0.368 Sum_probs=83.1
Q ss_pred CCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeec
Q 026737 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (234)
Q Consensus 56 ~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~ 130 (234)
+++|+++.|+ +||+||+|.+. ++++||||+|+++|.++.++.+.|++||.|+|+|+++|+++++|+||+|++
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~---~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~ 89 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEY---NNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRV 89 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTT---TTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccC---CCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 4899999999 99999999311 269999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhcccccccc------------ceeeeecCCceEEE-Ecccccccc
Q 026737 131 EEDPLLETLEKVIPQGLE------------PYLKSFYKKMDDVR-ITRQGFEKR 171 (234)
Q Consensus 131 ~~~p~~~~~~~~~~~G~~------------G~fV~l~~gi~Gl~-~s~~~~~~~ 171 (234)
.++||....++ ++.|.. | ++|++|++||+ +|+.+|.++
T Consensus 90 ~~~p~~~~~~~-~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~~~ 140 (182)
T 1kl9_A 90 SPEEAIKCEDK-FTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFDDK 140 (182)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHHHH
T ss_pred CcChHHHHHHh-ccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchhhh
Confidence 99999876665 555521 5 78888999999 887755543
No 3
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.73 E-value=2.7e-18 Score=131.48 Aligned_cols=89 Identities=36% Similarity=0.620 Sum_probs=80.2
Q ss_pred hHhhhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccc-cccchhhhhCCCCEEEEEEEEEeCCCC
Q 026737 48 VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKS 121 (234)
Q Consensus 48 ~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~-~~~~~~~~~~vGd~v~vkVl~id~~~~ 121 (234)
+|+.+...+++|+++.|+ +||+||+|+ ++++||||+|++++. +..++.+.|++||.|+|+|+++|.+++
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~-----~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~ 94 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE-----EGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 94 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECS-----TTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTT
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEEC-----CCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCC
Confidence 577777899999999999 999999997 379999999999985 778899999999999999999999999
Q ss_pred eEEEEEeecccCcchhhhhc
Q 026737 122 RITLSIKQLEEDPLLETLEK 141 (234)
Q Consensus 122 ri~LS~K~~~~~p~~~~~~~ 141 (234)
+|.||+|++.+|||+++.++
T Consensus 95 rI~lslk~~~~~p~~~~~~~ 114 (115)
T 2khi_A 95 RISLGLKQCKANPWQQFAET 114 (115)
T ss_dssp EEEECCCCCCSSCCCCCCCC
T ss_pred EEEEEEEecCcCHHHHHHhh
Confidence 99999999999999865543
No 4
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.67 E-value=3.2e-16 Score=137.41 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=91.5
Q ss_pred CCCCEEEEEEEEEeCCCCEEEEEechh----hHhhhhcCCCCCcEEEEE-----EeeEEE-EEecCCCcceeEEEEEcee
Q 026737 21 LTGSIISVKVIQANEEMKKLVFSEKDA----VWNKYSSRVNVEDIFVGR-----DYGAFI-HLRFPDGLYHLTGLVHVSE 90 (234)
Q Consensus 21 ~vG~~v~~~Vi~id~~~~~i~lS~k~~----~~~~~~~~~~~G~iv~g~-----~~G~fV-~l~~~~g~~g~~glv~ise 90 (234)
.+||++.++ +++|+ ++|+++|+|++ +|......+++|++|+|+ +||+|| .++ ++++||||.||
T Consensus 113 ~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~-----~g~~Glih~SE 185 (285)
T 3go5_A 113 KKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPE-----NNMLGFIHPSE 185 (285)
T ss_dssp CTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETT-----TTEEEEECGGG
T ss_pred CCCCEEEEE-EEECC-CCcEEEEehhhhhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeC-----CCeEEEEEHHH
Confidence 599999766 79998 78999999754 477778899999999999 999999 996 37999999999
Q ss_pred cccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhh
Q 026737 91 VSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139 (234)
Q Consensus 91 ls~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~ 139 (234)
++. .+++||+|+|+|+++|++++||+||+|++...+|.+..
T Consensus 186 l~~--------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~~~~a 226 (285)
T 3go5_A 186 RYA--------EPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDA 226 (285)
T ss_dssp CSS--------CCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCCCHHH
T ss_pred ccc--------cCCCCCEEEEEEEEEECCCCeEEEEeChhhhhccchHH
Confidence 984 38999999999999999899999999999888876543
No 5
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.66 E-value=3.5e-17 Score=134.04 Aligned_cols=87 Identities=24% Similarity=0.447 Sum_probs=70.1
Q ss_pred CCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeecc
Q 026737 57 NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (234)
Q Consensus 57 ~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~ 131 (234)
++|+++.|+ +||+||+|.+. ++++||||+|+++|.++.++.+.|++||.|+|+|+++|+++++|.||+|++.
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~---~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~ 90 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEY---DNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVS 90 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTT---TTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCC
T ss_pred CCCCEEEEEEEEEecceEEEEEcCC---CCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecC
Confidence 499999999 99999999310 2699999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhccccccc
Q 026737 132 EDPLLETLEKVIPQGL 147 (234)
Q Consensus 132 ~~p~~~~~~~~~~~G~ 147 (234)
++||....++ ++.|.
T Consensus 91 ~~~~~~~~~~-~~~g~ 105 (175)
T 2a19_A 91 SEDIIKCEEK-YQKSK 105 (175)
T ss_dssp HHHHHHHHHH-HHHHH
T ss_pred cChHHHHHHh-ccCCC
Confidence 9999877666 56663
No 6
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.4e-17 Score=123.67 Aligned_cols=88 Identities=27% Similarity=0.369 Sum_probs=78.4
Q ss_pred hHhhhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCC--
Q 026737 48 VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK-- 120 (234)
Q Consensus 48 ~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~-- 120 (234)
.|+.+...+++|++|.|+ +||+||+|++ .+.+||||+++++|.++.++.+.|++||.|+|+|+++|.++
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g----~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~ 87 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPG----CRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDR 87 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTT----CSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSC
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECC----CcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccC
Confidence 467777889999999999 9999999962 13699999999999999999999999999999999999864
Q ss_pred CeEEEEEeecccCcchhhh
Q 026737 121 SRITLSIKQLEEDPLLETL 139 (234)
Q Consensus 121 ~ri~LS~K~~~~~p~~~~~ 139 (234)
++|.||+|++.++||+...
T Consensus 88 ~~i~LSlk~~~~~~~~~~~ 106 (119)
T 2cqo_A 88 IKVSLSMKVVNQGTGKDLD 106 (119)
T ss_dssp EEEEEESTTBCSSSCCBSC
T ss_pred ceEEEEEeecccCCccccC
Confidence 7999999999999997643
No 7
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.63 E-value=5.7e-16 Score=121.00 Aligned_cols=78 Identities=41% Similarity=0.747 Sum_probs=73.6
Q ss_pred cCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026737 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (234)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K 128 (234)
..+++|++|.|+ +||+||+|+ .+++||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~-----~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALD-----EETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEE-----TTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEEC-----CCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 468999999998 999999997 3799999999999999999999999999999999999998999999999
Q ss_pred ecccCcch
Q 026737 129 QLEEDPLL 136 (234)
Q Consensus 129 ~~~~~p~~ 136 (234)
++.++||.
T Consensus 78 ~~~~~p~~ 85 (130)
T 2k4k_A 78 ATQAAPEK 85 (130)
T ss_dssp HHHHSCCC
T ss_pred ecccCccc
Confidence 99999975
No 8
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.62 E-value=2.9e-16 Score=118.98 Aligned_cols=86 Identities=28% Similarity=0.412 Sum_probs=75.1
Q ss_pred EEechh---hHhhhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEE
Q 026737 42 FSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 113 (234)
Q Consensus 42 lS~k~~---~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkV 113 (234)
-|.|++ +|+.+...+++|+++.|+ +||+||+|+ ++++||||++++++.++.++.+.|++||.|+|+|
T Consensus 12 ~~iKq~~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~-----~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V 86 (109)
T 2khj_A 12 SGLVPRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELA-----DGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 86 (109)
T ss_dssp ---------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECS-----TTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEE
T ss_pred cchhhcccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEEC-----CCCEEEEEHHHcCcccccChhhccCCCCEEEEEE
Confidence 355554 599999999999999999 999999997 3699999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEeeccc
Q 026737 114 IKIDREKSRITLSIKQLEE 132 (234)
Q Consensus 114 l~id~~~~ri~LS~K~~~~ 132 (234)
+++|+++++|.||+|++.+
T Consensus 87 ~~vd~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 87 TGVDRKNRAISLSVRAKDE 105 (109)
T ss_dssp EEEETTTTEEEEETTSSSS
T ss_pred EEEECCCCEEEEEEeecCh
Confidence 9999988899999998764
No 9
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.62 E-value=8.4e-16 Score=112.25 Aligned_cols=76 Identities=33% Similarity=0.453 Sum_probs=68.6
Q ss_pred cCCCCCcEEEEE----EeeEEEEEecCCCcceeEEEEEce-ecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026737 54 SRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (234)
Q Consensus 54 ~~~~~G~iv~g~----~~G~fV~l~~~~g~~g~~glv~is-els~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K 128 (234)
...++|+++.|+ +||+||+|.+. ++++||||+| +++++++.++++.+ +||.|+|+|+++|++++||.||+|
T Consensus 7 ~~~~vG~~~~G~V~v~~fG~FVel~~~---~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 7 SLPNAGDVIKGRVYEKDYALYIYLFDY---PHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CCCCTTCEEEEEEEEETTEEEEEETTC---TTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEccEEEEEECCC---CCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 457899999998 99999999621 1699999999 99999999999999 999999999999999999999999
Q ss_pred ecccC
Q 026737 129 QLEED 133 (234)
Q Consensus 129 ~~~~~ 133 (234)
++.++
T Consensus 83 ~~~~~ 87 (88)
T 1luz_A 83 RMCRH 87 (88)
T ss_dssp EECSC
T ss_pred ecCCC
Confidence 98765
No 10
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=114.84 Aligned_cols=82 Identities=26% Similarity=0.541 Sum_probs=71.8
Q ss_pred hcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceec-ccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEE
Q 026737 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (234)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isel-s~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS 126 (234)
...+++|+++.|+ +||+||+|++.. ++++||||+|++ ++.++.++.+.|++||.|+|+|+++|. ++|.||
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~--~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LS 82 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLR--KRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLS 82 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSS--SCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEE
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCC--CCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEE
Confidence 4568999999998 999999997210 169999999999 667889999999999999999999996 699999
Q ss_pred EeecccCcchhh
Q 026737 127 IKQLEEDPLLET 138 (234)
Q Consensus 127 ~K~~~~~p~~~~ 138 (234)
+|++.++||...
T Consensus 83 lk~~~~~~~~~~ 94 (103)
T 2eqs_A 83 MKDVDQETGEDL 94 (103)
T ss_dssp STTBCTTTCCBC
T ss_pred EeecccCCchhc
Confidence 999999999753
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.56 E-value=1.3e-14 Score=103.85 Aligned_cols=70 Identities=31% Similarity=0.491 Sum_probs=62.7
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEee
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~ 129 (234)
++++|+++.|+ +||+||+|+ ++++||+|+|++++.++ +.|++||.|+|+|+++|++++||.||+|+
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~-----~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLN-----EQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEE-----TTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEEC-----CCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 47899999998 999999998 37999999999998876 67999999999999999988999999998
Q ss_pred cccC
Q 026737 130 LEED 133 (234)
Q Consensus 130 ~~~~ 133 (234)
+.+.
T Consensus 73 ~~~~ 76 (80)
T 2k52_A 73 LEHH 76 (80)
T ss_dssp CC--
T ss_pred cccc
Confidence 8753
No 12
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.55 E-value=1.1e-15 Score=116.92 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=61.3
Q ss_pred EEEeecccCcchhhhhcccccccc-----------ceeeeecCCceEEE-EccccccccccccccccccccCCCCCccee
Q 026737 125 LSIKQLEEDPLLETLEKVIPQGLE-----------PYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFT 192 (234)
Q Consensus 125 LS~K~~~~~p~~~~~~~~~~~G~~-----------G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (234)
-|+|++..+||...... +..|.+ |+||+|++|++||+ +|+++++.+. .++.
T Consensus 11 ~~~k~~~~~p~~~~~~~-~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~----------------~~~~ 73 (115)
T 2khi_A 11 SSGLVPRGSHWVAIAKR-YPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKN----------------IHPS 73 (115)
T ss_dssp ----------CCCSSCS-SCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTT----------------CSST
T ss_pred cchhhcccCCHHHHhhc-CCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccc----------------cCcc
Confidence 36777777887654333 444421 99999999999999 8888543211 2344
Q ss_pred eeeeCCCEEEEEEeeecc----chhhhcccccchhHHHHhhc
Q 026737 193 LLARAGRQVQEIQLSHSL----IRKASKRHCNEYWNVFHETA 230 (234)
Q Consensus 193 ~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~p~~~~~~~~ 230 (234)
..+++||.|+|+|+++|. |+||+|++.++||+.+.++|
T Consensus 74 ~~~~vGd~V~vkV~~vd~~~~rI~lslk~~~~~p~~~~~~~~ 115 (115)
T 2khi_A 74 KVVNVGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETH 115 (115)
T ss_dssp TTCCTTCEEEEEEEEEETTTTEEEECCCCCCSSCCCCCCCCC
T ss_pred cEECCCCEEEEEEEEEECCCCEEEEEEEecCcCHHHHHHhhC
Confidence 589999999999999985 99999999999999988775
No 13
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.53 E-value=3.5e-15 Score=131.91 Aligned_cols=87 Identities=29% Similarity=0.497 Sum_probs=77.7
Q ss_pred CCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeec
Q 026737 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (234)
Q Consensus 56 ~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~ 130 (234)
+++|+++.|+ +||+||+|++. ++++||||+|+++|.++.++.+.|++||.|.|+|+++|+++++|.||+|++
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey---~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~ 87 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEY---NNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRV 87 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTT---TSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCC---CCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 4699999999 89999999511 169999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhcccccc
Q 026737 131 EEDPLLETLEKVIPQG 146 (234)
Q Consensus 131 ~~~p~~~~~~~~~~~G 146 (234)
.++||.....+ ++.|
T Consensus 88 ~~~p~~~~~~~-~~~G 102 (308)
T 1q8k_A 88 SPEEAIKCEDK-FTKS 102 (308)
T ss_dssp CHHHHHHHHHH-HHHH
T ss_pred ccChHHHHHHH-ccCC
Confidence 99999877665 4554
No 14
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.52 E-value=9.2e-15 Score=127.52 Aligned_cols=87 Identities=30% Similarity=0.515 Sum_probs=76.9
Q ss_pred CCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeec
Q 026737 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (234)
Q Consensus 56 ~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~ 130 (234)
+++|+++.|+ +||+||+|++.+ +++||||+|+++|.++.++.+.|++||.|.|+|+++|+++++|.||+|++
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~---gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~ 85 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYP---GKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRV 85 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTST---TCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCC---CeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 4589999999 999999996211 69999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhcccccc
Q 026737 131 EEDPLLETLEKVIPQG 146 (234)
Q Consensus 131 ~~~p~~~~~~~~~~~G 146 (234)
.++||....++ +..|
T Consensus 86 ~~~~~~~~~~~-~~~g 100 (275)
T 3aev_A 86 TQQQRKAKLQE-FKRA 100 (275)
T ss_dssp CHHHHHHHHHH-HHHH
T ss_pred CcchhHHHHHh-ccCC
Confidence 99999866554 4443
No 15
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.44 E-value=8.3e-14 Score=114.58 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=66.8
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeee--cCCceEEE-Ecccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSF--YKKMDDVR-ITRQGFEKRVVSQDLQL 179 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l--~~gi~Gl~-~s~~~~~~~~~~~~~~~ 179 (234)
.++|+.+.++|.++.. + |+||+| .+|++||+ +|+++++.
T Consensus 13 p~~G~iv~G~V~~I~~-----------------------f------GaFV~L~e~~g~eGLvhiSels~~~--------- 54 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAE-----------------------M------GAYVSLLEYNNIEGMILLSELSRRR--------- 54 (182)
T ss_dssp CCTTCEEEEEEEEECS-----------------------S------EEEEEETTTTTEEEEEEGGGC-------------
T ss_pred CCCCCEEEEEEEEEec-----------------------c------EEEEEEccCCCcEEEEEHHHCCCcc---------
Confidence 4789999999998863 5 999999 57999999 89985432
Q ss_pred ccccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccchhHHHHhhcccC
Q 026737 180 WLSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNEYWNVFHETAIVN 233 (234)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~p~~~~~~~~~~~ 233 (234)
. .++...+++||.|+|+|+++|. |+||+|++.++||+.+.++|++|
T Consensus 55 ---v-----~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~p~~~~~~~~~~g 104 (182)
T 1kl9_A 55 ---I-----RSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKS 104 (182)
T ss_dssp ----------------CTTCEEEEEEEEEETTTTEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred ---c-----CCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcChHHHHHHhccCC
Confidence 1 3456699999999999999985 99999999999999999999865
No 16
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.43 E-value=3.6e-14 Score=123.29 Aligned_cols=84 Identities=31% Similarity=0.498 Sum_probs=75.9
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEee
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~ 129 (234)
.+++|+++.|+ +||+||+|++.+ +.+||||+|+++|.++.++.+.|++||.|.|+|+++|+++++|.||+|+
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~---~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYG---GLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTT---SEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCC---CeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 47899999999 999999995111 6999999999999999999999999999999999999989999999999
Q ss_pred cccCcchhhhhc
Q 026737 130 LEEDPLLETLEK 141 (234)
Q Consensus 130 ~~~~p~~~~~~~ 141 (234)
+.++||....++
T Consensus 85 ~~~~~~~~~~~~ 96 (266)
T 3cw2_C 85 VTDDERRKKNLQ 96 (266)
T ss_dssp SCTTHHHHHHHH
T ss_pred cchhhHHHHHHh
Confidence 999999775554
No 17
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.40 E-value=2.2e-14 Score=139.20 Aligned_cols=101 Identities=29% Similarity=0.481 Sum_probs=2.0
Q ss_pred EEEeCCCCEEEEEech-h-------hHhhhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceeccccccc
Q 026737 31 IQANEEMKKLVFSEKD-A-------VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 97 (234)
Q Consensus 31 i~id~~~~~i~lS~k~-~-------~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~ 97 (234)
+++++ .+.+.++... . .++.+...+++|++|.|+ +||+||+|. ++++||||+|+++|.++.
T Consensus 603 idi~d-dG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~-----~g~eGLvHiSels~~rv~ 676 (726)
T 4aid_A 603 VDIND-DGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFF-----GAKDGLVHVSQISNERVA 676 (726)
T ss_dssp ------------CCSCHHHHHHHHHC------------------------------------------------------
T ss_pred eeEEC-CceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEEC-----CCcEEEEEHHHcCccccc
Confidence 56664 4555555432 1 256677889999999999 999999997 479999999999999999
Q ss_pred chhhhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhh
Q 026737 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 138 (234)
Q Consensus 98 ~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~ 138 (234)
++.+.|++||.|+|||+++|+ ++||.||+|++.++||.+.
T Consensus 677 ~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~~G~~~ 716 (726)
T 4aid_A 677 KPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQETGEDL 716 (726)
T ss_dssp -----------------------------------------
T ss_pred CccccCCCCCEEEEEEEEECC-CCcEEEEEeecccCcchhh
Confidence 999999999999999999998 8999999999999999754
No 18
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.39 E-value=4.2e-13 Score=109.76 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=68.2
Q ss_pred CCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeec--CCceEEE-Eccccccccccccccccc
Q 026737 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFY--KKMDDVR-ITRQGFEKRVVSQDLQLW 180 (234)
Q Consensus 104 ~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~--~gi~Gl~-~s~~~~~~~~~~~~~~~~ 180 (234)
++|+.+.++|.++.. + |+||+|. +|++||+ +|+++++.
T Consensus 14 ~~G~iv~G~V~~i~~-----------------------f------GaFV~L~e~~gveGLvhiSels~~~---------- 54 (175)
T 2a19_A 14 EIDDIVMVNVQQIAE-----------------------M------GAYVKLLEYDNIEGMILLSELSRRR---------- 54 (175)
T ss_dssp CTTCEEEEEEEEEET-----------------------T------EEEEEETTTTTCEEEEECC----------------
T ss_pred CCCCEEEEEEEEEec-----------------------c------eEEEEEcCCCCcEEEEEHHHcCCcc----------
Confidence 489999999998864 5 9999995 7999999 89985432
Q ss_pred cccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccchhHHHHhhcccC
Q 026737 181 LSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNEYWNVFHETAIVN 233 (234)
Q Consensus 181 ~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~p~~~~~~~~~~~ 233 (234)
. .++...+++||.|+|+|+++|. |+||+|++.++||+.+.++|++|
T Consensus 55 v-------~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~~~~~~~~~~~g 104 (175)
T 2a19_A 55 I-------RSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKS 104 (175)
T ss_dssp ---------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred c-------CCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcChHHHHHHhccCC
Confidence 1 2455689999999999999985 99999999999999999999875
No 19
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.34 E-value=9.7e-14 Score=134.98 Aligned_cols=101 Identities=30% Similarity=0.541 Sum_probs=0.0
Q ss_pred EEEeCCCCEEEEEechh--------hHhhhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceeccccccc
Q 026737 31 IQANEEMKKLVFSEKDA--------VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 97 (234)
Q Consensus 31 i~id~~~~~i~lS~k~~--------~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~ 97 (234)
++++. .+.+.++.... .++.+...+++|++|+|+ +||+||+|. ++.+||||+|+++|.++.
T Consensus 593 IdI~~-dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~-----~g~eGLvHiSel~~~~v~ 666 (723)
T 3cdi_A 593 IEIED-DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG-----GGKEGLVHISQIADKRVE 666 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecC-CccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeC-----CCceEEEEHHHcCCcccc
Confidence 45654 45666654432 255667889999999999 999999997 479999999999999999
Q ss_pred chhhhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhh
Q 026737 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 138 (234)
Q Consensus 98 ~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~ 138 (234)
++.+.|++||.|+|||+++|. ++||+||+|++.++||...
T Consensus 667 ~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~~g~~~ 706 (723)
T 3cdi_A 667 KVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAA 706 (723)
T ss_dssp -----------------------------------------
T ss_pred CcccccCCCCEEEEEEEEECC-CCcEEEEEEeccCCCCccc
Confidence 999999999999999999998 9999999999999998753
No 20
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.31 E-value=2.7e-14 Score=139.41 Aligned_cols=103 Identities=21% Similarity=0.407 Sum_probs=38.2
Q ss_pred EEEeCCCCEEEEEechh--------hHhhhh--cCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceec----
Q 026737 31 IQANEEMKKLVFSEKDA--------VWNKYS--SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV---- 91 (234)
Q Consensus 31 i~id~~~~~i~lS~k~~--------~~~~~~--~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isel---- 91 (234)
++++. .+.+.+|.... .++.+. ..+++|++|.|+ +||+||+|. ++++||||+|++
T Consensus 631 IdI~~-dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~-----~g~eGLvHiSel~~~~ 704 (757)
T 1e3p_A 631 ITIED-DGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLL-----PGKDGLLHISQIRKLA 704 (757)
T ss_dssp C---------CCCBSSHHHHCC---------------------CBEEECC-CSCEECCC--------CCCCC--------
T ss_pred EEecC-CceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEEEEccccEEEEEEc-----CCcEEEEEhHHhcccc
Confidence 56664 67788887642 123444 678999999998 999999997 479999999999
Q ss_pred ccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhh
Q 026737 92 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140 (234)
Q Consensus 92 s~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~ 140 (234)
+|.++.++.+.|++||.|+|+|+++|+ ++||+||+|++.++||.....
T Consensus 705 s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~pw~~~~~ 752 (757)
T 1e3p_A 705 GGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVIEGEEAASDEKK 752 (757)
T ss_dssp -----------CCSSCBCCCCCCCCCS-SCC------------------
T ss_pred CCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEecCCCCchhhhhh
Confidence 999999999999999999999999998 999999999999999976443
No 21
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.28 E-value=5.1e-14 Score=137.42 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=43.7
Q ss_pred EeeEEEEEecCCCcceeEEEEEceecccccccchh---------hhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcch
Q 026737 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR---------DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136 (234)
Q Consensus 66 ~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~---------~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~ 136 (234)
++|+||+|+ .+|.+|++..++....... ..+++|+.+.++|.++..
T Consensus 626 ~~G~~IdI~-------~dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V~~i~~------------------ 680 (757)
T 1e3p_A 626 DTGAEITIE-------DDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTT------------------ 680 (757)
T ss_dssp CCCSCC---------------CCCBSSHHHHCC---------------------CBEEECC-------------------
T ss_pred hhCCEEEec-------CCceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEEEEccc------------------
Confidence 899999996 4899999998876543221 223444444444444321
Q ss_pred hhhhccccccccceeeeecCCceEEE-Eccc----cccccccccccccccccCCCCCcceeeeeeCCCEEEEEEeeecc-
Q 026737 137 ETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQ----GFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL- 210 (234)
Q Consensus 137 ~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~- 210 (234)
+ |+||+|.+|++||+ +|++ +++. + .++..++++||+|+|+|+++|.
T Consensus 681 -----f------GaFV~l~~g~eGLvHiSel~~~~s~~r-v----------------~~~~~~~~vGd~V~VkVi~vd~~ 732 (757)
T 1e3p_A 681 -----F------GAFVSLLPGKDGLLHISQIRKLAGGKR-V----------------ENVEDVLGVGQKVQVEIAEIDSR 732 (757)
T ss_dssp -----C------SCEECCC---CCCCC------------------------------------CCSSCBCCCCCCCCCSS
T ss_pred -----c------EEEEEEcCCcEEEEEhHHhccccCCCc-c----------------cCcccccCCCCEEEEEEEEECCC
Confidence 3 99999999999999 8998 5432 1 3456689999999999999984
Q ss_pred --chhhhcccccchhHHHHhhcc
Q 026737 211 --IRKASKRHCNEYWNVFHETAI 231 (234)
Q Consensus 211 --i~ls~K~~~~~p~~~~~~~~~ 231 (234)
|+||+|++.++||+...++|+
T Consensus 733 grI~LS~k~~~~~pw~~~~~~~~ 755 (757)
T 1e3p_A 733 GKLSLIPVIEGEEAASDEKKDDA 755 (757)
T ss_dssp CC---------------------
T ss_pred CCEEEEEecCCCCchhhhhhccc
Confidence 999999999999999998875
No 22
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=5.2e-12 Score=94.53 Aligned_cols=80 Identities=19% Similarity=0.106 Sum_probs=66.6
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecC---CceEEE-Eccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYK---KMDDVR-ITRQGFEKRVVSQDLQ 178 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~---gi~Gl~-~s~~~~~~~~~~~~~~ 178 (234)
+++|+.+.++|.++.+ + |+||+|.+ +++||+ +|++.++.++
T Consensus 10 ~~vG~i~~G~V~~v~~-----------------------f------G~FV~l~~~~~~~~Glvhisel~~~~~~------ 54 (103)
T 2eqs_A 10 PTIGDIYNGKVTSIMQ-----------------------F------GCFVQLEGLRKRWEGLVHISELRREGRV------ 54 (103)
T ss_dssp CCTTCEEEEEEEEECS-----------------------S------CEEEEECSSSSCCEEEECGGGTSSSSCC------
T ss_pred CCCCCEEEEEEEEEec-----------------------c------EEEEEEcCCCCCeEEEEEHHHCCCCccc------
Confidence 6789999999998853 4 99999986 999999 8988433221
Q ss_pred cccccCCCCCcceeeeeeCCCEEEEEEeeecc--chhhhcccccchhHHHH
Q 026737 179 LWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL--IRKASKRHCNEYWNVFH 227 (234)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~--i~ls~K~~~~~p~~~~~ 227 (234)
.++...+++||.|+|+|+++|. |+||+|++.++||+.+.
T Consensus 55 ----------~~~~~~~~~Gd~V~VkV~~vd~~~i~LSlk~~~~~~~~~~~ 95 (103)
T 2eqs_A 55 ----------ANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQETGEDLN 95 (103)
T ss_dssp ----------CCHHHHCCTTCEEEEEEEEEETTEEEEESTTBCTTTCCBCC
T ss_pred ----------CCcccEeCCCCEEEEEEEEEECCeeEEEEeecccCCchhcC
Confidence 2455689999999999999986 99999999999998764
No 23
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.20 E-value=5e-12 Score=103.55 Aligned_cols=82 Identities=27% Similarity=0.563 Sum_probs=67.3
Q ss_pred HhhhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccc-----------cchhhhhCCCCEEEEE
Q 026737 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----------QDIRDILNEGDEVRVK 112 (234)
Q Consensus 49 ~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~-----------~~~~~~~~vGd~v~vk 112 (234)
+.....++.+|+++.|+ +||+||+++ +.+||+|+|+++++++ ++..+.|++||.|++|
T Consensus 72 ~~~iv~~p~~Gev~~G~V~~v~~~G~fv~l~------~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~Vrvk 145 (180)
T 4ayb_E 72 FDMITYVPVVQEVVEGEVLQVDNYGVFVNLG------PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRAR 145 (180)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEECS------SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEE
T ss_pred hheeeeeccCCCEEEEEEeeeccceEEEEEC------CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEE
Confidence 44556789999999999 999999996 5899999999999876 4677789999999999
Q ss_pred EEEEeCC----CCeEEEEEeecc--cCcch
Q 026737 113 VIKIDRE----KSRITLSIKQLE--EDPLL 136 (234)
Q Consensus 113 Vl~id~~----~~ri~LS~K~~~--~~p~~ 136 (234)
|+++|.+ ..||.||+|+.- +.+|-
T Consensus 146 V~~v~~~~~~~~~rI~ls~k~~gLG~~~W~ 175 (180)
T 4ayb_E 146 VISVASTVTGRLPRIALTMRQPYLGKLEWI 175 (180)
T ss_dssp EEEECC-------CEEEECCSTTCEEHHHH
T ss_pred EEEEeCCCCcccCcEEEEcCCCCCCCChhH
Confidence 9999864 458999999843 44454
No 24
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.20 E-value=6.4e-12 Score=94.86 Aligned_cols=79 Identities=8% Similarity=0.004 Sum_probs=53.5
Q ss_pred EEEEeecccCcchhhhhcccccccc-----------ceeeeecCCceEEE-EccccccccccccccccccccCCCCCcce
Q 026737 124 TLSIKQLEEDPLLETLEKVIPQGLE-----------PYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKF 191 (234)
Q Consensus 124 ~LS~K~~~~~p~~~~~~~~~~~G~~-----------G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
+-|+|++.++||..+... +..|.+ |+||+|.+|++||+ +|+++++.. .++
T Consensus 11 ~~~iKq~~~~p~~~~~~~-~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~-----------------~~~ 72 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWVAL-NKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRV-----------------EDA 72 (109)
T ss_dssp ----------CHHHHTTT-CCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSS-----------------SSG
T ss_pred ccchhhcccCHHHHHhhc-CCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccc-----------------cCh
Confidence 457899999999876655 555521 99999999999999 888743211 234
Q ss_pred eeeeeCCCEEEEEEeeecc----chhhhccccc
Q 026737 192 TLLARAGRQVQEIQLSHSL----IRKASKRHCN 220 (234)
Q Consensus 192 ~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~ 220 (234)
...+++||.|+|+|+++|. |.||+|++.+
T Consensus 73 ~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 73 TLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDE 105 (109)
T ss_dssp GGSCCTTCEEEEEEEEEETTTTEEEEETTSSSS
T ss_pred hhccCCCCEEEEEEEEEECCCCEEEEEEeecCh
Confidence 5589999999999999984 9999999864
No 25
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=95.17 Aligned_cols=87 Identities=7% Similarity=-0.054 Sum_probs=68.5
Q ss_pred ccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecC-CceEEE-Ecccccccccc
Q 026737 96 IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYK-KMDDVR-ITRQGFEKRVV 173 (234)
Q Consensus 96 ~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~-gi~Gl~-~s~~~~~~~~~ 173 (234)
...+...+++|+.+.++|.++.. + |+||+|.+ +++||+ +|+++++..
T Consensus 13 ~~~~~~~~~vG~iv~G~V~~I~~-----------------------f------GaFV~l~g~~~~Glvhisel~~~~~-- 61 (119)
T 2cqo_A 13 PETMENLPALYTIFQGEVAMVTD-----------------------Y------GAFIKIPGCRKQGLVHRTHMSSCRV-- 61 (119)
T ss_dssp CCCSCCSCCTTCEEEEEEEEEET-----------------------T------EEEEECTTCSSCEEEEHHHHCSSCC--
T ss_pred hhhhhcccCCCCEEEEEEEEEeC-----------------------c------eEEEEECCCcEEEEEEHHHCCcccc--
Confidence 33444557899999999998863 4 99999955 479999 888853311
Q ss_pred ccccccccccCCCCCcceeeeeeCCCEEEEEEeeec------cchhhhcccccchhHHHHh
Q 026737 174 SQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHS------LIRKASKRHCNEYWNVFHE 228 (234)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d------~i~ls~K~~~~~p~~~~~~ 228 (234)
.++...+++||.|+|+|+++| +|+||+|++.++||+.+..
T Consensus 62 ---------------~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~~~~~~~~~~~~ 107 (119)
T 2cqo_A 62 ---------------DKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDP 107 (119)
T ss_dssp ---------------SCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTTBCSSSCCBSCT
T ss_pred ---------------cChhhcCCCCCEEEEEEEEEeccccCceEEEEEeecccCCccccCc
Confidence 235568999999999999997 3999999999999987653
No 26
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.17 E-value=2.1e-11 Score=107.77 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=72.5
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeec--CCceEEE-Ecccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFY--KKMDDVR-ITRQGFEKRVVSQDLQL 179 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~--~gi~Gl~-~s~~~~~~~~~~~~~~~ 179 (234)
+++|+.+.++|.++.+ + |+||+|. +|++||+ +|+++++.
T Consensus 11 ~~vG~iv~G~V~~I~~-----------------------f------GaFV~L~ey~gveGLvhiSels~~~--------- 52 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQE-----------------------M------GAYVSLLEYNNIEGMIHLSELSRRR--------- 52 (308)
T ss_dssp CSSCCEEEEEEEEEET-----------------------T------EEEEESCTTTSCCEEECGGGTSCSS---------
T ss_pred CCCCCEEEEEEEEEeC-----------------------c------EEEEEECCCCCeEEEEEhHHcCccc---------
Confidence 4689999999999864 4 9999998 7999999 89985421
Q ss_pred ccccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccchhHHHHhhcccC
Q 026737 180 WLSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNEYWNVFHETAIVN 233 (234)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~p~~~~~~~~~~~ 233 (234)
. .++...+++||.|+|+|+++|. |+||+|++.++||..+.+.|++|
T Consensus 53 -i-------~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~p~~~~~~~~~~G 102 (308)
T 1q8k_A 53 -I-------RSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKS 102 (308)
T ss_dssp -C-------SCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred -c-------cCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecccChHHHHHHHccCC
Confidence 1 2355689999999999999985 99999999999999999998865
No 27
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.17 E-value=2.8e-11 Score=92.75 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=62.3
Q ss_pred hcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceec-ccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEE
Q 026737 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (234)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isel-s~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS 126 (234)
..++++|+++.|+ +||+||+|+ . .+..|++|.++. +|.++.++.+.|++||.|+|+|+++|.++++|.||
T Consensus 16 ~~~l~~G~i~~G~V~~v~~fG~fV~l~--~--~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 16 AEALKPGMLLTGTVSSLEDHGYLVDIG--V--DGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLS 91 (119)
T ss_dssp TTTCCTTCEEEEEEEEECSSEEEEECC--C--SSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEE
T ss_pred HhcCCCCCEEEEEEEEEeCceEEEEEC--C--CCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 4679999999999 999999997 1 146777766654 34455678899999999999999999989999999
Q ss_pred Eeeccc
Q 026737 127 IKQLEE 132 (234)
Q Consensus 127 ~K~~~~ 132 (234)
+|+...
T Consensus 92 lk~~~l 97 (119)
T 1wi5_A 92 VGHSEV 97 (119)
T ss_dssp CCCCCS
T ss_pred Echhhc
Confidence 997543
No 28
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.16 E-value=4.6e-11 Score=98.27 Aligned_cols=79 Identities=25% Similarity=0.494 Sum_probs=67.4
Q ss_pred hhhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceeccccccc-----------chhhhhCCCCEEEEEE
Q 026737 50 NKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ-----------DIRDILNEGDEVRVKV 113 (234)
Q Consensus 50 ~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~-----------~~~~~~~vGd~v~vkV 113 (234)
......+.+|+++.|+ +||+||+|+ +.+||+|+|++++.++. ++.+.|++||.|+|+|
T Consensus 73 ~~i~~~~~~Gev~~G~V~~v~~~G~fV~l~------~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV 146 (187)
T 1go3_E 73 ETLVYIPEMYELIEGEVVDVVEFGSFVRLG------PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARI 146 (187)
T ss_dssp EEEEECCCTTCEEEEEEEEEETTEEEEECS------SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEE
T ss_pred EEEEEccCCCCEEEEEEEEEeCcEEEEEEc------CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEE
Confidence 3445678999999999 999999996 49999999999988775 7888999999999999
Q ss_pred EEEeCCCC-----eEEEEEeecccCc
Q 026737 114 IKIDREKS-----RITLSIKQLEEDP 134 (234)
Q Consensus 114 l~id~~~~-----ri~LS~K~~~~~p 134 (234)
+++|.+++ +|.||+|+..-.|
T Consensus 147 ~~vd~~~~~p~~~~I~lS~k~~~LG~ 172 (187)
T 1go3_E 147 VAISLKAERKRGSKIALTMRQPYLGK 172 (187)
T ss_dssp EEEECCC-----CEEEEECCSTTCEE
T ss_pred EEEEcccCCCCccEEEEEEcCCCCCc
Confidence 99998654 9999999854433
No 29
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.8e-11 Score=122.97 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=68.2
Q ss_pred hcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceeccccc-ccchhhhhCCCCEEEEEEEEEeCCCCeEEEE
Q 026737 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (234)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~-~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS 126 (234)
.+.+++|+++.|+ +||+||+|+ +|++||||+|++++.+ +.+|.+.|++||.|+|+|+++|.++++|.||
T Consensus 897 ~~~l~~G~iv~G~V~~V~~fGaFV~L~-----~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LS 971 (1219)
T 3psi_A 897 EKTFFKGSIIPVRVERFWHNDIICTTN-----SEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVS 971 (1219)
T ss_dssp TTTSCTTCEEEEEEEEECSSCEEEECT-----TSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEE
T ss_pred HhhCCCCCEEEEEEEEEecceEEEEeC-----CCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEE
Confidence 3789999999999 999999997 4799999999999998 8999999999999999999999999999999
Q ss_pred Eeec
Q 026737 127 IKQL 130 (234)
Q Consensus 127 ~K~~ 130 (234)
+|..
T Consensus 972 lk~~ 975 (1219)
T 3psi_A 972 LLDH 975 (1219)
T ss_dssp CCHH
T ss_pred ecHH
Confidence 9853
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.15 E-value=3.7e-12 Score=123.93 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEEE--EeeEEEEEecCCCcceeEEEEEceecccccc-------cchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeecc
Q 026737 61 IFVGR--DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-------QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (234)
Q Consensus 61 iv~g~--~~G~fV~l~~~~g~~g~~glv~isels~~~~-------~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~ 131 (234)
+++.. ++|+||+++ .+|.++++..++... ......+++|+.+.++|.++..
T Consensus 581 ~I~~I~~~~G~~IdI~-------~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~------------- 640 (723)
T 3cdi_A 581 VIRALTEETGTTIEIE-------DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD------------- 640 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeehhhCceEEec-------CCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEec-------------
Confidence 34444 899999996 479999987666543 2333446778888888877642
Q ss_pred cCcchhhhhccccccccceeeeecCCceEEE-EccccccccccccccccccccCCCCCcceeeeeeCCCEEEEEEeeecc
Q 026737 132 EDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL 210 (234)
Q Consensus 132 ~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~ 210 (234)
+ |+||+|.+|++||+ +|+++++. + .++...+++||+|+|+|+++|.
T Consensus 641 ----------f------GaFVel~~g~eGLvHiSel~~~~----------v-------~~~~~~~~vGd~V~VkVi~vd~ 687 (723)
T 3cdi_A 641 ----------F------GAFVAIGGGKEGLVHISQIADKR----------V-------EKVTDYLQMGQEVPVKVLEVDR 687 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------c------eEEEEeCCCceEEEEHHHcCCcc----------c-------cCcccccCCCCEEEEEEEEECC
Confidence 4 99999999999999 89985432 1 3456689999999999999984
Q ss_pred ---chhhhcccccchhHHHHhh
Q 026737 211 ---IRKASKRHCNEYWNVFHET 229 (234)
Q Consensus 211 ---i~ls~K~~~~~p~~~~~~~ 229 (234)
|+||+|++.++||+.+...
T Consensus 688 ~grI~LS~k~~~~~~g~~~~p~ 709 (723)
T 3cdi_A 688 QGRIRLSIKEATEQSQPAAAPE 709 (723)
T ss_dssp ----------------------
T ss_pred CCcEEEEEEeccCCCCcccCcc
Confidence 9999999999999887543
No 31
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.14 E-value=4.9e-11 Score=92.88 Aligned_cols=77 Identities=13% Similarity=0.041 Sum_probs=64.7
Q ss_pred hhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Eccccccccccccccccc
Q 026737 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLW 180 (234)
Q Consensus 102 ~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~ 180 (234)
.+++|+.+.++|.++.+ + |+||+|.+|++||| +|+++++.
T Consensus 4 ~~~vG~iv~G~V~~i~~-----------------------~------G~FV~l~~~~~Glihisel~~~~---------- 44 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQA-----------------------Y------GAFVALDEETQGLVHISEVTHGF---------- 44 (130)
T ss_dssp CCCTTCEEEEEEEEEET-----------------------T------EEEEEEETTEEEEEEGGGTSSSC----------
T ss_pred cCCCCCEEEEEEEEEeC-----------------------C------eEEEEECCCcEEEEEHHHCCccc----------
Confidence 37899999999998864 4 99999999999999 88885321
Q ss_pred cccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccchhH
Q 026737 181 LSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNEYWN 224 (234)
Q Consensus 181 ~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~p~~ 224 (234)
. .++...+++||.|+|+|+++|. |+||+|++.++||+
T Consensus 45 ~-------~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~p~~ 85 (130)
T 2k4k_A 45 V-------KDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAAPEK 85 (130)
T ss_dssp C-------SCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHSCCC
T ss_pred c-------cCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccCccc
Confidence 1 2345589999999999999985 99999999999985
No 32
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.14 E-value=4.8e-11 Score=103.97 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=71.6
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeec--CCceEEE-Ecccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFY--KKMDDVR-ITRQGFEKRVVSQDLQL 179 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~--~gi~Gl~-~s~~~~~~~~~~~~~~~ 179 (234)
.++|+.+.++|.++.. + |+||+|. +|++||+ +|+++++.
T Consensus 9 p~~Gdiv~G~V~~I~~-----------------------f------GaFV~L~e~~gieGlIhiSels~~~--------- 50 (275)
T 3aev_A 9 PEEGEFVVATVKRIHN-----------------------Y------GAFLELDEYPGKEAFMHISEVASTW--------- 50 (275)
T ss_dssp CCTTCEEEEEEEEEET-----------------------T------EEEEEETTSTTCEEEEEGGGSCSSC---------
T ss_pred CCCCCEEEEEEEEEEC-----------------------c------EEEEEECCCCCeEEEEEHHHcCccc---------
Confidence 4689999999999864 5 9999998 6999999 89885321
Q ss_pred ccccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccchhHHHHhhcccC
Q 026737 180 WLSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNEYWNVFHETAIVN 233 (234)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~p~~~~~~~~~~~ 233 (234)
. .++...+++||.|+|+|+++|. |+||+|++.++||....++|++|
T Consensus 51 -v-------~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~~~~~~~~~~~~g 100 (275)
T 3aev_A 51 -V-------RNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRA 100 (275)
T ss_dssp -C-------SCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred -c-------cCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcchhHHHHHhccCC
Confidence 1 2345689999999999999985 99999999999999998888765
No 33
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.10 E-value=2.3e-11 Score=119.10 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=68.0
Q ss_pred hcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEE
Q 026737 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (234)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~ 127 (234)
..++++|+++.|+ +||+||+|+ .+++||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+
T Consensus 649 ~~~l~vG~iv~G~V~~V~~fGaFV~l~-----~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSl 723 (785)
T 3bzc_A 649 LKDLKPGMVLEGVVTNVTNFGAFVDIG-----VHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSM 723 (785)
T ss_dssp STTCCTTCBCCCEEEEEETTEEEEECS-----SSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECC
T ss_pred hhhcCCCCEEEEEEEEEecCCeEEEeC-----CCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEE
Confidence 3568899999888 999999997 368999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 026737 128 KQLE 131 (234)
Q Consensus 128 K~~~ 131 (234)
|...
T Consensus 724 k~~~ 727 (785)
T 3bzc_A 724 RMSD 727 (785)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 9644
No 34
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.09 E-value=6.8e-12 Score=121.78 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=2.9
Q ss_pred EeeEEEEEecCCCcceeEEEEEceeccc-------ccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhh
Q 026737 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-------DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 138 (234)
Q Consensus 66 ~~G~fV~l~~~~g~~g~~glv~isels~-------~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~ 138 (234)
++|+-+++. -+|.+.+.--+. .++......+++|+.+.++|.++..
T Consensus 598 ~tg~~idi~-------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~-------------------- 650 (726)
T 4aid_A 598 TTGAKVDIN-------DDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVD-------------------- 650 (726)
T ss_dssp -----------------------CCSCHHHHHHHHHC-------------------------------------------
T ss_pred HHCCceeEE-------CCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEec--------------------
Confidence 889999886 467777764432 2345555668899999999988753
Q ss_pred hhccccccccceeeeecCCceEEE-EccccccccccccccccccccCCCCCcceeeeeeCCCEEEEEEeeecc---chhh
Q 026737 139 LEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL---IRKA 214 (234)
Q Consensus 139 ~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~---i~ls 214 (234)
+ |+||+|.+|++||+ +|+++++.. .++...+++||.|+|+|+++|. |+||
T Consensus 651 ---f------GaFVel~~g~eGLvHiSels~~rv-----------------~~~~d~~kvGD~V~VkVi~iD~~grI~LS 704 (726)
T 4aid_A 651 ---F------GAFVNFFGAKDGLVHVSQISNERV-----------------AKPSDVLKEGQMVKVKLLGFDDRGKTKLS 704 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---c------EEEEEECCCcEEEEEHHHcCcccc-----------------cCccccCCCCCEEEEEEEEECCCCcEEEE
Confidence 5 99999999999999 899854321 2456689999999999999985 9999
Q ss_pred hcccccchhHHHHhhccc
Q 026737 215 SKRHCNEYWNVFHETAIV 232 (234)
Q Consensus 215 ~K~~~~~p~~~~~~~~~~ 232 (234)
+|++.++||+.+.++.++
T Consensus 705 ~K~~~~~~G~~~~~k~~~ 722 (726)
T 4aid_A 705 MKVVDQETGEDLSKKEAA 722 (726)
T ss_dssp ------------------
T ss_pred EeecccCcchhhhhhhhh
Confidence 999999999999877654
No 35
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.6e-11 Score=123.12 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred cCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceeccccc-ccchhhhhCCCCEEEEEEEEEeCCCCeEEEEE
Q 026737 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (234)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~-~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~ 127 (234)
..+++|+++.|+ +||+||+|+ +|++||||+|++++.+ +.+|.+.|++||.|+|+|+++|.++++|.||+
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~-----~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSl 975 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTN-----SEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSL 975 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeC-----CCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEe
Confidence 688999999999 999999997 4799999999999998 89999999999999999999999999999999
Q ss_pred eecc
Q 026737 128 KQLE 131 (234)
Q Consensus 128 K~~~ 131 (234)
|+..
T Consensus 976 k~~d 979 (1030)
T 3psf_A 976 LDHD 979 (1030)
T ss_dssp ----
T ss_pred chHH
Confidence 9754
No 36
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.02 E-value=4.1e-10 Score=94.41 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=65.9
Q ss_pred cCCCCCcEEEEE-----EeeEEEEEecCCC---cceeEEEEEceeccccccc--chhhhhCCCCEEEEEEEEEeCCCCeE
Q 026737 54 SRVNVEDIFVGR-----DYGAFIHLRFPDG---LYHLTGLVHVSEVSWDLIQ--DIRDILNEGDEVRVKVIKIDREKSRI 123 (234)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g---~~g~~glv~isels~~~~~--~~~~~~~vGd~v~vkVl~id~~~~ri 123 (234)
..+++|++|.|+ ++|+||+|.+.++ ..+.+|+||++|+++.+.. ++.+.|++||.|+|+|++++..++++
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 357999999999 9999999953210 0157899999999999888 89999999999999999999877799
Q ss_pred EEEEeec
Q 026737 124 TLSIKQL 130 (234)
Q Consensus 124 ~LS~K~~ 130 (234)
.||+|+.
T Consensus 157 ~LS~k~~ 163 (209)
T 2nn6_I 157 LLTTAEN 163 (209)
T ss_dssp EEECCSS
T ss_pred EEEEecC
Confidence 9999875
No 37
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.99 E-value=7.4e-10 Score=90.71 Aligned_cols=70 Identities=27% Similarity=0.393 Sum_probs=60.2
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCC-----cceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEE
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDG-----LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g-----~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~ 124 (234)
.++ |++|.|+ ++|+||+|...+| ..+.+|+||+|++++.++.++.+.|++||.|+|+|++ +++.
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~ 128 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLR 128 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEE
Confidence 367 9999999 8999999972100 0068999999999999999999999999999999997 8899
Q ss_pred EEEeec
Q 026737 125 LSIKQL 130 (234)
Q Consensus 125 LS~K~~ 130 (234)
||+|+.
T Consensus 129 LS~k~~ 134 (179)
T 3m7n_A 129 LSTKEE 134 (179)
T ss_dssp EECCST
T ss_pred EEEecC
Confidence 999874
No 38
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.97 E-value=2e-10 Score=99.72 Aligned_cols=86 Identities=9% Similarity=-0.015 Sum_probs=72.0
Q ss_pred hhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeec--CCceEEE-Eccccccccccccccc
Q 026737 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFY--KKMDDVR-ITRQGFEKRVVSQDLQ 178 (234)
Q Consensus 102 ~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~--~gi~Gl~-~s~~~~~~~~~~~~~~ 178 (234)
.+++|+.+.++|.++.+ + |+||+|. +|++||+ +|+++++.
T Consensus 8 ~~~vG~iv~G~V~~I~~-----------------------~------GaFV~l~e~~~~~GlihiSels~~~-------- 50 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFD-----------------------Y------GSYVSLDEYGGLQAFLPWSEVSSKW-------- 50 (266)
T ss_dssp SCCTTCEEEEEEEECCS-----------------------S------SBEEEETTTTSEECBBCGGGSSCSS--------
T ss_pred cCCCCCEEEEEEEEEec-----------------------c------EEEEEEcCCCCeEEEEEhHHcCccc--------
Confidence 36789999999988753 4 9999997 7999999 89885321
Q ss_pred cccccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccchhHHHHhhcccC
Q 026737 179 LWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNEYWNVFHETAIVN 233 (234)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~p~~~~~~~~~~~ 233 (234)
. .++...+++||.|.|+|+++|. |+||+|++.++||+.+.+.|+++
T Consensus 51 --v-------~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~~~~~~~~~~~~~~~ 100 (266)
T 3cw2_C 51 --V-------KNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKI 100 (266)
T ss_dssp --C-------CCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSCTTHHHHHHHHHHHH
T ss_pred --c-------cCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecchhhHHHHHHhcccc
Confidence 1 3456689999999999999985 99999999999999998888654
No 39
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.96 E-value=4.4e-10 Score=81.70 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=57.3
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecC--CceEEE-Ec-cccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYK--KMDDVR-IT-RQGFEKRVVSQDLQ 178 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~--gi~Gl~-~s-~~~~~~~~~~~~~~ 178 (234)
.++|+.+.++|. +.. + |+||+|.+ |++||+ +| +++++..
T Consensus 9 ~~vG~~~~G~V~-v~~-----------------------f------G~FVel~~~~~~eGLvhis~el~~~~~------- 51 (88)
T 1luz_A 9 PNAGDVIKGRVY-EKD-----------------------Y------ALYIYLFDYPHFEAILAESVKMHMDRY------- 51 (88)
T ss_dssp CCTTCEEEEEEE-EET-----------------------T------EEEEEETTCTTSEEEEGGGSSCCHHHH-------
T ss_pred CCCCCEEEEEEE-EEc-----------------------c------EEEEEECCCCCeEEEEEeeHHhCcccc-------
Confidence 468999999998 864 5 99999974 899999 89 9854321
Q ss_pred cccccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccc
Q 026737 179 LWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNE 221 (234)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~ 221 (234)
.+++..+ .||+|+|+|+++|. |+||+|++.++
T Consensus 52 ----------~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~~~~ 87 (88)
T 1luz_A 52 ----------VEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMCRH 87 (88)
T ss_dssp ----------HHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEECSC
T ss_pred ----------cCHhHEe-CCCEEEEEEEEEECCCCEEEEEEeecCCC
Confidence 1234466 99999999999985 99999998764
No 40
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.93 E-value=1.9e-09 Score=76.66 Aligned_cols=69 Identities=7% Similarity=-0.013 Sum_probs=56.7
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWL 181 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~ 181 (234)
+++|+.+.++|.++.+ + |+||+|.++++||+ +|+++++.
T Consensus 3 ~~~G~iv~G~V~~v~~-----------------------~------G~fV~l~~~~~Gllh~sel~~~~----------- 42 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEK-----------------------Y------GAFINLNEQVRGLLRPRDMISLR----------- 42 (80)
T ss_dssp CCTTCEEEEEEEEEET-----------------------T------EEEEEEETTEEEEECGGGCSSCC-----------
T ss_pred CCCCCEEEEEEEEEeC-----------------------C------EEEEEECCCCEEEEEHHHCCccc-----------
Confidence 5789999999998864 4 99999999999999 88874211
Q ss_pred ccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccc
Q 026737 182 SNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNE 221 (234)
Q Consensus 182 ~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~ 221 (234)
+ ..+++||+|+|+|+++|. |+||+|++.+.
T Consensus 43 ---------~-~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~~ 76 (80)
T 2k52_A 43 ---------L-ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEHH 76 (80)
T ss_dssp ---------G-GGCCTTCEEEEEEEEEETTTTEEEEEECSCC--
T ss_pred ---------c-eeeCCCCEEEEEEEEEECCCCEEEEEEeecccc
Confidence 1 368999999999999985 99999998753
No 41
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.87 E-value=2.7e-09 Score=86.62 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=53.5
Q ss_pred hhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccch----------hhhhCCCCEEEEEEEE
Q 026737 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI----------RDILNEGDEVRVKVIK 115 (234)
Q Consensus 51 ~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~----------~~~~~vGd~v~vkVl~ 115 (234)
.......+|++++|+ +||+||+++ + .+||||+|++++.+..++ ++.+++||.|+++|++
T Consensus 76 ~~~~~~~~Gev~~G~V~~v~~fG~FV~l~-----~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (171)
T 1y14_B 76 AVVFKPFKGEVVDGTVVSCSQHGFEVQVG-----P-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (171)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEEET-----T-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEE
T ss_pred EEEccCCCCCEEEEEEEEEecCEEEEEec-----C-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEE
Confidence 345678999999999 999999997 4 999999999986543222 2669999999999999
Q ss_pred EeCCCC
Q 026737 116 IDREKS 121 (234)
Q Consensus 116 id~~~~ 121 (234)
+|.+.+
T Consensus 150 vd~~~~ 155 (171)
T 1y14_B 150 CISQVS 155 (171)
T ss_dssp EEEETT
T ss_pred EEcCCC
Confidence 998664
No 42
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.86 E-value=1.8e-09 Score=90.82 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=63.0
Q ss_pred hhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchh----------hhhCCCCEEEEEEEE
Q 026737 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR----------DILNEGDEVRVKVIK 115 (234)
Q Consensus 51 ~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~----------~~~~vGd~v~vkVl~ 115 (234)
.......+|++++|+ +||+||+|+ + .+||||+|++++.+..++. +.+++||.|+++|++
T Consensus 76 ~i~~~p~vGev~~G~V~~vt~fG~FVelg-----~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 76 AVVFKPFKGEVVDGTVVSCSQHGFEVQVG-----P-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (215)
T ss_dssp EEEECCCTTEEEEEEEEEEETTEEEEECT-----T-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEE
T ss_pred hheeccCCCCEEEEEEEEEecceEEEEec-----C-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEE
Confidence 345568999999999 999999997 4 8999999999865443332 569999999999999
Q ss_pred EeCCCC---eEEEEEeecccCcch
Q 026737 116 IDREKS---RITLSIKQLEEDPLL 136 (234)
Q Consensus 116 id~~~~---ri~LS~K~~~~~p~~ 136 (234)
+|.+.+ +|. |+|+...-||.
T Consensus 150 vd~~~~~i~~Ig-Smk~~~LG~~~ 172 (215)
T 2b8k_G 150 CISQVSSIHAIG-SIKEDYLGAIS 172 (215)
T ss_dssp EEEETTEEEEEE-ECCSTTCEEC-
T ss_pred EEcCCCccEEEE-EcCCCCCCCcc
Confidence 998764 677 88876655654
No 43
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.84 E-value=3.5e-09 Score=85.89 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=56.3
Q ss_pred hhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccch------------hhhhCCCCEEEEEEE
Q 026737 52 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI------------RDILNEGDEVRVKVI 114 (234)
Q Consensus 52 ~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~------------~~~~~vGd~v~vkVl 114 (234)
......+|++++|+ +||+||+|+ ..+||||+|++++.+..++ ...|++||.|+++|+
T Consensus 75 ~~~~~~~Gev~~G~V~~v~~fG~fV~l~------~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~ 148 (172)
T 2c35_B 75 IVFRPFKGEVVDAVVTQVNKVGLFTEIG------PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIV 148 (172)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEEET------TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEE
T ss_pred EEeeCCCCCEEEEEEEEEeCCEEEEEEC------CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEE
Confidence 34567899999999 999999996 4679999999986533222 457999999999999
Q ss_pred EEeCCCC---eEEEEEee
Q 026737 115 KIDREKS---RITLSIKQ 129 (234)
Q Consensus 115 ~id~~~~---ri~LS~K~ 129 (234)
++|.+.+ ++. |+|+
T Consensus 149 ~vd~~~~~~~~ig-sm~~ 165 (172)
T 2c35_B 149 GTRVDKNDIFAIG-SLMD 165 (172)
T ss_dssp EEEEETTEEEEEE-ECCS
T ss_pred EEEcCCCCcEEEE-EecC
Confidence 9998765 444 6654
No 44
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.74 E-value=7.1e-09 Score=89.15 Aligned_cols=70 Identities=26% Similarity=0.373 Sum_probs=63.0
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccc---cchhhhhCCCCEEEEEEEEEeCCCCeEEEE
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI---QDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~---~~~~~~~~vGd~v~vkVl~id~~~~ri~LS 126 (234)
.+++|++|.|+ ++|+||+|+ .+.+|++|++++++.+. .++.+.|++||.|.|+|++++. .+++.||
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~-----~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS 144 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIK-----APYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLS 144 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECS-----SSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcC-----CCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEE
Confidence 57999999999 899999997 36899999999998877 7888899999999999999996 5799999
Q ss_pred Eeec
Q 026737 127 IKQL 130 (234)
Q Consensus 127 ~K~~ 130 (234)
+|+.
T Consensus 145 ~r~~ 148 (251)
T 2je6_I 145 VKGK 148 (251)
T ss_dssp CCST
T ss_pred Eccc
Confidence 9864
No 45
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.73 E-value=6.9e-09 Score=92.76 Aligned_cols=98 Identities=17% Similarity=0.141 Sum_probs=74.4
Q ss_pred cccCCCCEEEEEEEEEeCCCCEEEEEechhh--------HhhhhcCCC--CCcEEEEE-----EeeEEEEEecCCCccee
Q 026737 18 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV--------WNKYSSRVN--VEDIFVGR-----DYGAFIHLRFPDGLYHL 82 (234)
Q Consensus 18 ~~~~vG~~v~~~Vi~id~~~~~i~lS~k~~~--------~~~~~~~~~--~G~iv~g~-----~~G~fV~l~~~~g~~g~ 82 (234)
.+..+|+++++.|...|. +++.+.+.|+.. .+.++..|+ .|++++|+ ++|+||+++ +.
T Consensus 85 ~~~~vGd~ie~~I~~~df-gR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG------k~ 157 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNF-GRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG------KL 157 (344)
T ss_dssp TTCCTTCEEEEECCCCCS-SSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET------TE
T ss_pred ccccCCCEEEEEEccccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC------Ce
Confidence 345699999999987664 333444445432 223455665 89999999 889999996 69
Q ss_pred EEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCC--eEEEEEe
Q 026737 83 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS--RITLSIK 128 (234)
Q Consensus 83 ~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~--ri~LS~K 128 (234)
+|++|.+|++ |.+.|++||.|+|.|++++.+++ +|.||.+
T Consensus 158 EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 158 ETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp EEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred EEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 9999999987 56789999999999999997655 5666665
No 46
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.69 E-value=4.4e-09 Score=85.48 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=56.0
Q ss_pred HhhhhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccch----------hhhhCCCCEEEEEE
Q 026737 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI----------RDILNEGDEVRVKV 113 (234)
Q Consensus 49 ~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~----------~~~~~vGd~v~vkV 113 (234)
+.....+...|++++|+ +||+||+++ ..+||||+|++++.+..++ .+.+++||.|++||
T Consensus 75 f~~ivf~p~~Gev~~G~V~~v~~fG~FV~l~------~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV 148 (172)
T 3h0g_G 75 YRAVLWRPFRGEVVDAIVTTVNKMGFFANIG------PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKI 148 (172)
T ss_dssp EEEEEECCCTTCEEECCCCEEETTEEECCBT------TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEE
T ss_pred EEEeeeccCCCCEEEEEEEEEEcceEEEEeC------CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEE
Confidence 34456678999999999 999999996 4779999999986544333 56899999999999
Q ss_pred EEEeCCCCe
Q 026737 114 IKIDREKSR 122 (234)
Q Consensus 114 l~id~~~~r 122 (234)
+++|.+.++
T Consensus 149 ~~vd~~~~~ 157 (172)
T 3h0g_G 149 VGTRTDATE 157 (172)
T ss_dssp EEEEESSSC
T ss_pred EEEECCCCC
Confidence 999987744
No 47
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.69 E-value=3.1e-08 Score=84.06 Aligned_cols=70 Identities=26% Similarity=0.356 Sum_probs=62.6
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccc-cccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~-~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K 128 (234)
.+++|++|.|+ ++|+||+|+ ...+|++|+++++.. +..++++.|++||.|.|+|++++. .+++.||+|
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~-----~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r 127 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIY-----SPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMK 127 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECS-----SSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECC
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeC-----CCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEc
Confidence 47999999999 899999997 358999999999974 678899999999999999999996 589999998
Q ss_pred ec
Q 026737 129 QL 130 (234)
Q Consensus 129 ~~ 130 (234)
+.
T Consensus 128 ~~ 129 (229)
T 2ba0_A 128 DR 129 (229)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 48
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.68 E-value=3.5e-08 Score=73.38 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=57.6
Q ss_pred CCCCcEEEEE--------EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEE
Q 026737 56 VNVEDIFVGR--------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (234)
Q Consensus 56 ~~~G~iv~g~--------~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~ 127 (234)
...++.++|+ .|| |+.-. +| +.++|+|+|++.+..+ ....+++||.|+..|..+.+
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~--~g--g~dvfvH~s~l~~~~~--~~~~l~~Ge~V~g~V~~i~~--------- 74 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPD--DG--SKDVFVHFSAGSSGAA--VRGNPQQGDRVEGKIKSITD--------- 74 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEES--SS--SCEEEEECCCSCSSSC--CCCCCCTTCEEEEEEEECCS---------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeC--CC--CcEEEEEEEEEecCCc--cccCCCCCCEEEEEEEEeCC---------
Confidence 3456677787 578 88865 22 5899999999998753 11336799999999987653
Q ss_pred eecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccc
Q 026737 128 KQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFE 169 (234)
Q Consensus 128 K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~ 169 (234)
+ |+||+|.++++||+ +|+++|.
T Consensus 75 --------------f------G~fv~l~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 75 --------------F------GIFIGLDGGIDGLVHLSDISWA 97 (101)
T ss_dssp --------------E------EEEECTTSCEEEEEEEEEEEEC
T ss_pred --------------c------EEEEEcCCCceEEEEHHHCccC
Confidence 5 99999999999999 9998543
No 49
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.64 E-value=2.1e-08 Score=85.41 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=61.3
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccc----cccchhhhhCCCCEEEEEEEEEeCCCCeEEE
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LIQDIRDILNEGDEVRVKVIKIDREKSRITL 125 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~----~~~~~~~~~~vGd~v~vkVl~id~~~~ri~L 125 (234)
.+++|++|.|+ ++|+||+|+ .+.+|++|+++++.+ +..++.+.|++||.|.|+|++++. .+++.|
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~-----~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~L 136 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDIN-----SPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLL 136 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECS-----SSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEE
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeC-----CCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEE
Confidence 57999999999 899999997 368999999999873 456788899999999999999996 569999
Q ss_pred EEeec
Q 026737 126 SIKQL 130 (234)
Q Consensus 126 S~K~~ 130 (234)
|+|+.
T Consensus 137 S~k~~ 141 (235)
T 2z0s_A 137 TVQGE 141 (235)
T ss_dssp ECCSS
T ss_pred EEecc
Confidence 99853
No 50
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.43 E-value=2.9e-07 Score=70.16 Aligned_cols=74 Identities=9% Similarity=-0.004 Sum_probs=57.1
Q ss_pred hhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeec-CCceEEEEccccccccccccccccc
Q 026737 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFY-KKMDDVRITRQGFEKRVVSQDLQLW 180 (234)
Q Consensus 102 ~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~-~gi~Gl~~s~~~~~~~~~~~~~~~~ 180 (234)
.+++|+.+.++|.++.. + |+||+|. +++.||+++++.. .|
T Consensus 18 ~l~~G~i~~G~V~~v~~-----------------------f------G~fV~l~~~~~~~l~~~~~~~----------~~ 58 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLED-----------------------H------GYLVDIGVDGTRAFLPLLKAQ----------EY 58 (119)
T ss_dssp TCCTTCEEEEEEEEECS-----------------------S------EEEEECCCSSCEEEEEHHHHH----------HH
T ss_pred cCCCCCEEEEEEEEEeC-----------------------c------eEEEEECCCCeEEEEEEeccc----------cc
Confidence 47899999999998853 5 9999998 5888888776521 24
Q ss_pred cccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccc
Q 026737 181 LSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHC 219 (234)
Q Consensus 181 ~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~ 219 (234)
.... ++...+++||.|+|+|+++|. |.||+|+..
T Consensus 59 ~~~~-----~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~~ 96 (119)
T 1wi5_A 59 IRQK-----NKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 96 (119)
T ss_dssp HHHH-----SSSCCCCTTCEEEEEEEECCTTSCEEEEECCCCC
T ss_pred cccc-----CccCEeCCCCEEEEEEEEEeCCCCEEEEEEchhh
Confidence 3211 234589999999999999984 999999763
No 51
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.39 E-value=8.1e-07 Score=72.72 Aligned_cols=87 Identities=9% Similarity=0.031 Sum_probs=61.3
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWL 181 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~ 181 (234)
..+|+.+.++|.++.+ + |+||+|.+ ++||+ +|++..+...-.++-..|.
T Consensus 79 ~~~Gev~~G~V~~v~~-----------------------~------G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~ 128 (187)
T 1go3_E 79 PEMYELIEGEVVDVVE-----------------------F------GSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAII 128 (187)
T ss_dssp CCTTCEEEEEEEEEET-----------------------T------EEEEECSS-SEEEEEGGGSCSSCEEECCC--CEE
T ss_pred cCCCCEEEEEEEEEeC-----------------------c------EEEEEEcC-ccEEEEhHHhCCCcceECCccceEE
Confidence 5679999999988864 4 99999965 99999 7888544321111111333
Q ss_pred ccCCCCCcceeeeeeCCCEEEEEEeeec---------cchhhhccc--ccchhHH
Q 026737 182 SNAPPSGKKFTLLARAGRQVQEIQLSHS---------LIRKASKRH--CNEYWNV 225 (234)
Q Consensus 182 ~~~~~~~~~~~~~~~~G~~v~~~vl~~d---------~i~ls~K~~--~~~p~~~ 225 (234)
. .+....+++||.|+|+|+++| +|+||+|+. .+.+|-.
T Consensus 129 ~------~~~~~~~~~Gd~V~vkV~~vd~~~~~p~~~~I~lS~k~~~LG~~~w~~ 177 (187)
T 1go3_E 129 G------KETGKVLEIGDYVRARIVAISLKAERKRGSKIALTMRQPYLGKLEWIE 177 (187)
T ss_dssp E------TTTCCEECTTCEEEEEEEEEECCC-----CEEEEECCSTTCEEHHHHH
T ss_pred e------cCCCeEEcCCCEEEEEEEEEEcccCCCCccEEEEEEcCCCCCcHHHHh
Confidence 2 134568999999999999997 388999994 4566643
No 52
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.39 E-value=6.3e-07 Score=72.96 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=62.3
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWL 181 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~ 181 (234)
..+|+.+.++|.++.. + |+||++. +++||+ +|++..+.....+.-..|.
T Consensus 79 p~~Gev~~G~V~~v~~-----------------------~------G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~ 128 (180)
T 4ayb_E 79 PVVQEVVEGEVLQVDN-----------------------Y------GVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIF 128 (180)
T ss_dssp CCTTCEEEEEEEEEET-----------------------T------EEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEE
T ss_pred ccCCCEEEEEEeeecc-----------------------c------eEEEEEC-CccceEEeeecCCCccccchhcceEE
Confidence 4579999999988874 4 9999995 599999 8988665442222211222
Q ss_pred ccCCCCCcceeeeeeCCCEEEEEEeeecc--------chhhhcc--cccchhH
Q 026737 182 SNAPPSGKKFTLLARAGRQVQEIQLSHSL--------IRKASKR--HCNEYWN 224 (234)
Q Consensus 182 ~~~~~~~~~~~~~~~~G~~v~~~vl~~d~--------i~ls~K~--~~~~p~~ 224 (234)
- .+....++.||+|+++|+++|. |+||||+ |-+-+|=
T Consensus 129 g------~~~~~~~~~Gd~VrvkV~~v~~~~~~~~~rI~ls~k~~gLG~~~W~ 175 (180)
T 4ayb_E 129 G------EKSKKVIQKGDKVRARVISVASTVTGRLPRIALTMRQPYLGKLEWI 175 (180)
T ss_dssp E------TTTCCCCCTTCEEEEEEEEECC-------CEEEECCSTTCEEHHHH
T ss_pred E------eccCeEECCCCEEEEEEEEEeCCCCcccCcEEEEcCCCCCCCChhH
Confidence 2 1234589999999999999972 9999999 5666773
No 53
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.32 E-value=5.3e-07 Score=91.91 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=59.3
Q ss_pred hhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccccc
Q 026737 101 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQL 179 (234)
Q Consensus 101 ~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~ 179 (234)
+.+++|+.+.++|.++.. + |+||+|+.|++||| +|+++++..+
T Consensus 898 ~~l~~G~iv~G~V~~V~~-----------------------f------GaFV~L~~gveGLVHiSelsd~~~v------- 941 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWH-----------------------N------DIICTTNSEVECVVNAQRHAGAQLR------- 941 (1219)
T ss_dssp TTSCTTCEEEEEEEEECS-----------------------S------CEEEECTTSCEEEECTTSSSSTTSC-------
T ss_pred hhCCCCCEEEEEEEEEec-----------------------c------eEEEEeCCCceEEEEHHHcCCCccc-------
Confidence 347899999999998853 4 99999999999999 8998543211
Q ss_pred ccccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhccc
Q 026737 180 WLSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRH 218 (234)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~ 218 (234)
.++..++++||.|+|+|+++|. |+||+|..
T Consensus 942 ---------~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 942 ---------RPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp ---------SCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred ---------CCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHH
Confidence 2234589999999999999985 99999865
No 54
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.23 E-value=1.5e-06 Score=83.80 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=56.9
Q ss_pred CCCCCc--EEEEE-----EeeEEEEEecCCCcceeEEEEEceeccc--cccc----------chhhhhCCCCEEEEEEEE
Q 026737 55 RVNVED--IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLIQ----------DIRDILNEGDEVRVKVIK 115 (234)
Q Consensus 55 ~~~~G~--iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~--~~~~----------~~~~~~~vGd~v~vkVl~ 115 (234)
+-++|+ +++|+ +||+||+|.. +|++||||+|++++ +++. +....|++||.|+|+|++
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~----~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~ 630 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVD----NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAE 630 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETT----TCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEE
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcC----CcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEE
Confidence 457888 88887 9999999952 47999999999973 3311 345679999999999999
Q ss_pred EeCCCCeEEEEE
Q 026737 116 IDREKSRITLSI 127 (234)
Q Consensus 116 id~~~~ri~LS~ 127 (234)
+|.++++|.|++
T Consensus 631 vd~~~~~I~~~l 642 (644)
T 2id0_A 631 VRMETRSIIARP 642 (644)
T ss_dssp EETTTTEEEEEE
T ss_pred EeCCCCEEEEEE
Confidence 999999999987
No 55
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.12 E-value=3.5e-06 Score=70.41 Aligned_cols=73 Identities=12% Similarity=0.001 Sum_probs=56.3
Q ss_pred hhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeec--------CCceEEE-Eccccccccc
Q 026737 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFY--------KKMDDVR-ITRQGFEKRV 172 (234)
Q Consensus 102 ~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~--------~gi~Gl~-~s~~~~~~~~ 172 (234)
.+++||.|.++|+++.. + |+||+|. .+++|++ +|++++...
T Consensus 78 ~p~vGDvV~G~V~~v~~-----------------------~------~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~- 127 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINS-----------------------R------FAKVHILYVGSMPLKNSFRGTIRKEDVRATEK- 127 (209)
T ss_dssp CCCTTCEEEEEEEEECS-----------------------S------EEEEEEEESSSSCCCCSSCSCEEEEGGGTCSS-
T ss_pred CCCCCCEEEEEEEEEEC-----------------------c------eEEEEECccccccccCCceeEEEHHHcccccc-
Confidence 47899999999999864 3 6677753 5889999 888753221
Q ss_pred cccccccccccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhccc
Q 026737 173 VSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRH 218 (234)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~ 218 (234)
+ .-++.+.+++||.|+|+|++++. ++||+|+.
T Consensus 128 ------------~--~~~~~~~l~~GD~V~akVisi~~~~~~i~LS~k~~ 163 (209)
T 2nn6_I 128 ------------D--KVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAEN 163 (209)
T ss_dssp ------------C--CCCGGGTCCSSSEEEEEEEEEETTTTEEEEECCSS
T ss_pred ------------c--ccchhhhcCCCCEEEEEEEEEeCCCCeEEEEEecC
Confidence 0 02466789999999999999974 89999985
No 56
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.7e-07 Score=91.77 Aligned_cols=72 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred hhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Eccccccccccccccccc
Q 026737 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLW 180 (234)
Q Consensus 102 ~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~ 180 (234)
.+++|+.+.++|.++.. + |+||+|+.|++||| +|+++++..+
T Consensus 902 ~l~~G~iv~G~V~~V~~-----------------------f------GaFV~L~~gveGLVHiSelsd~~~v-------- 944 (1030)
T 3psf_A 902 TFFKGSIIPVRVERFWH-----------------------N------DIICTTNSEVECVVNAQRHAGAQLR-------- 944 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCEEEEEEEEEcc-----------------------C------eEEEEeCCCcEEEEEHHHcCCCccc--------
Confidence 36889999999887642 4 99999999999999 8998543211
Q ss_pred cccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhccc
Q 026737 181 LSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRH 218 (234)
Q Consensus 181 ~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~ 218 (234)
.++..++++||.|+|+|+++|. |+||+|+.
T Consensus 945 --------~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 978 (1030)
T 3psf_A 945 --------RPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 978 (1030)
T ss_dssp ------------------------------------------
T ss_pred --------CCHHHcCCCCCEEEEEEEEEECCCCEEEEEechH
Confidence 2345689999999999999984 99999976
No 57
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.07 E-value=5.8e-06 Score=67.39 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=53.9
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecC----------CceEEE-Ecccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYK----------KMDDVR-ITRQGFEKR 171 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~----------gi~Gl~-~s~~~~~~~ 171 (234)
.+ ||.|.++|.++.. + |+||+|.. +++||+ +|++++..
T Consensus 56 p~-GdiV~G~V~~V~~-----------------------~------ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~- 104 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRN-----------------------S------IALIEVSSKKGENRGPSNRGIGILHVSNVDEGY- 104 (179)
T ss_dssp CT-TCEEEEEEEEECS-----------------------S------EEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSC-
T ss_pred CC-CCEEEEEEEEEeC-----------------------C------cEEEEEccccCcccccccCeeEEEEHHHcCcch-
Confidence 46 9999999999864 3 77777766 899999 78874321
Q ss_pred ccccccccccccCCCCCcceeeeeeCCCEEEEEEeeeccchhhhccc
Q 026737 172 VVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSLIRKASKRH 218 (234)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~i~ls~K~~ 218 (234)
. .++.+.+++||.|+|+|++ ..++||+|+.
T Consensus 105 -----------~-----~~~~~~~~~GD~V~akVi~-~~i~LS~k~~ 134 (179)
T 3m7n_A 105 -----------V-----KEISEAVGYLDILKARVIG-DNLRLSTKEE 134 (179)
T ss_dssp -----------C-----SSGGGTCCTTCEEEEEEEE-TTTEEECCST
T ss_pred -----------h-----hCHhhcCCCCCEEEEEEEC-CeEEEEEecC
Confidence 1 2456689999999999999 6699999975
No 58
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.03 E-value=6.3e-06 Score=77.28 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=60.1
Q ss_pred hhcCCCCCcEEEEE-----Ee--eEEEEEecCCCcceeEEEEEceecccccc---------cchhhhhCCCCEEEEEEEE
Q 026737 52 YSSRVNVEDIFVGR-----DY--GAFIHLRFPDGLYHLTGLVHVSEVSWDLI---------QDIRDILNEGDEVRVKVIK 115 (234)
Q Consensus 52 ~~~~~~~G~iv~g~-----~~--G~fV~l~~~~g~~g~~glv~isels~~~~---------~~~~~~~~vGd~v~vkVl~ 115 (234)
......+|.+|.|+ ++ ||||+++ ++.+||+|++++++.++ .++.+.+++||.|.|+|++
T Consensus 39 ~~~~~~vGnIY~GkV~rv~p~~~aAFVdiG-----~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~K 113 (517)
T 2bx2_L 39 PGHEQKKANIYKGKITRIEPSLEAAFVDYG-----AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDK 113 (517)
T ss_dssp SSSCCCTTCEEEEEEEEEETTTTEEEEESS-----SSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEE
T ss_pred CCCcCCCCCEEEEEEEEeccCCceEEEEeC-----CCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEe
Confidence 34457899999999 77 9999998 47899999999998874 3466789999999999999
Q ss_pred EeCCCCeEEEEEeec
Q 026737 116 IDREKSRITLSIKQL 130 (234)
Q Consensus 116 id~~~~ri~LS~K~~ 130 (234)
....++...||..-.
T Consensus 114 e~~g~KGa~lTt~is 128 (517)
T 2bx2_L 114 EERGNKGAALTTFIS 128 (517)
T ss_dssp CCCTTCCCEEESSCC
T ss_pred eccccCCceEEeeEE
Confidence 887666666666543
No 59
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.02 E-value=5.6e-06 Score=68.81 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=51.6
Q ss_pred hcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccc-------------------cchhhhhCCCCE
Q 026737 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-------------------QDIRDILNEGDE 108 (234)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~-------------------~~~~~~~~vGd~ 108 (234)
.-+..+|+++.|+ ++|+||+|+ .++|++|++++.+++. ++....|++||.
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~lg------~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~ 149 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTIS------FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEE 149 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS------SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCE
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEEe------CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCE
Confidence 4467999999999 999999996 5899999999977654 344567999999
Q ss_pred EEEEEEEEeCC
Q 026737 109 VRVKVIKIDRE 119 (234)
Q Consensus 109 v~vkVl~id~~ 119 (234)
|++||++++..
T Consensus 150 VrvrV~~v~~~ 160 (203)
T 3ayh_B 150 IRFQIESEDFV 160 (203)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEcc
Confidence 99999999873
No 60
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.98 E-value=7.6e-06 Score=60.61 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=47.8
Q ss_pred CCCEEEEEEEEEeCCCCEEEEE-----------echhhHhhh-hcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEE
Q 026737 22 TGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKY-SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 84 (234)
Q Consensus 22 vG~~v~~~Vi~id~~~~~i~lS-----------~k~~~~~~~-~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~g 84 (234)
.++.+..+|...|.+++-=-+. .....+..+ ...+++|++|++. +||+||+|. ++++|
T Consensus 13 ~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~-----~~~eG 87 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLD-----GGIDG 87 (101)
T ss_dssp ---CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTT-----SCEEE
T ss_pred ccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcC-----CCceE
Confidence 5666777777776555432222 222222222 2679999999998 799999996 37999
Q ss_pred EEEceecccccc
Q 026737 85 LVHVSEVSWDLI 96 (234)
Q Consensus 85 lv~isels~~~~ 96 (234)
|||+|+++|.++
T Consensus 88 lvhis~i~~~~~ 99 (101)
T 2bh8_A 88 LVHLSDISWAQA 99 (101)
T ss_dssp EEEEEEEEECCC
T ss_pred EEEHHHCccCcC
Confidence 999999999875
No 61
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.96 E-value=2.5e-05 Score=70.07 Aligned_cols=83 Identities=10% Similarity=0.163 Sum_probs=56.9
Q ss_pred hhhhcCCC--CCcEEEEE--E-------eeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeC
Q 026737 50 NKYSSRVN--VEDIFVGR--D-------YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 118 (234)
Q Consensus 50 ~~~~~~~~--~G~iv~g~--~-------~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~ 118 (234)
+..+..|+ +|++++|+ . +++||+|++ +..+.+|++|.+|+. |.+.|++||.|+|.|++++.
T Consensus 120 ~~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~--~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~ 191 (366)
T 1k0r_A 120 ERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGT--ETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTR 191 (366)
T ss_dssp -------CCCTTCEEEEEEECCHHHHHTTCEEEEECC--SSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCC--CccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEec
Confidence 34555665 99999999 3 589999971 001399999999986 45789999999999999998
Q ss_pred CCCeEEEEEeecccCcchhhhh
Q 026737 119 EKSRITLSIKQLEEDPLLETLE 140 (234)
Q Consensus 119 ~~~ri~LS~K~~~~~p~~~~~~ 140 (234)
+++...+.+....++.....++
T Consensus 192 ~~kgpqI~LSRT~p~lv~~Lfe 213 (366)
T 1k0r_A 192 GAREPLITLSRTHPNLVRKLFS 213 (366)
T ss_dssp CSSSCEEEEESSCHHHHHHHHH
T ss_pred CCCccEEEEEeCChHHHHHHHH
Confidence 7655555555555555444343
No 62
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.90 E-value=2.4e-06 Score=83.81 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=55.5
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWL 181 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~ 181 (234)
+++|+.+.++|.++.. + |+||+|..+++||| +|++++ .++
T Consensus 652 l~vG~iv~G~V~~V~~-----------------------f------GaFV~l~~~~eGLVhiS~Lsd-~~v--------- 692 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTN-----------------------F------GAFVDIGVHQDGLVHISALSE-KFV--------- 692 (785)
T ss_dssp CCTTCBCCCEEEEEET-----------------------T------EEEEECSSSSEEEEETTTSCS-SCC---------
T ss_pred cCCCCEEEEEEEEEec-----------------------C------CeEEEeCCCcEEEEEHHHcCc-ccc---------
Confidence 5677777777776642 4 99999988999999 898853 121
Q ss_pred ccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccc
Q 026737 182 SNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHC 219 (234)
Q Consensus 182 ~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~ 219 (234)
.++...+++||.|+|+|+++|. |+||+|...
T Consensus 693 -------~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 693 -------KDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp -------SCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred -------CChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 2345689999999999999985 999999643
No 63
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=97.90 E-value=2.7e-05 Score=65.24 Aligned_cols=91 Identities=7% Similarity=-0.132 Sum_probs=57.6
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWL 181 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~ 181 (234)
..+|+.+.++|.++.. + |+||+|.+ ++||+ +|++. +.....+.-..|.
T Consensus 81 p~vGev~~G~V~~vt~-----------------------f------G~FVelg~-~dGlVhiS~l~-d~~~~d~~~~~w~ 129 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQ-----------------------H------GFEVQVGP-MKVFVTKHLMP-QDLTFNAGSNPPS 129 (215)
T ss_dssp CCTTEEEEEEEEEEET-----------------------T------EEEEECTT-SEEEEEGGGSC-SSCCCBSSCSSCE
T ss_pred cCCCCEEEEEEEEEec-----------------------c------eEEEEecC-cEEEEEHHHCC-ccceeccccccce
Confidence 3689999999988864 4 99999988 99999 88884 2211100101111
Q ss_pred ccCCCCCcceeeeeeCCCEEEEEEeeecc-------chhhhcccccchhHHHHhhcc
Q 026737 182 SNAPPSGKKFTLLARAGRQVQEIQLSHSL-------IRKASKRHCNEYWNVFHETAI 231 (234)
Q Consensus 182 ~~~~~~~~~~~~~~~~G~~v~~~vl~~d~-------i~ls~K~~~~~p~~~~~~~~~ 231 (234)
-... + .+++.||.|+++|+++|. |. |||+-.--||+....+.+
T Consensus 130 ~~~~----~--~~~~~Gd~VrVkV~~vd~~~~~i~~Ig-Smk~~~LG~~~~~~~~~~ 179 (215)
T 2b8k_G 130 YQSS----E--DVITIKSRIRVKIEGCISQVSSIHAIG-SIKEDYLGAISHEKRRWK 179 (215)
T ss_dssp EECS----S--CEEETTCEEEEEEEEEEEETTEEEEEE-ECCSTTCEEC--------
T ss_pred eecc----c--cEECCCCEEEEEEEEEEcCCCccEEEE-EcCCCCCCCcchhhHHHH
Confidence 1110 1 479999999999999984 66 888876677765544443
No 64
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.82 E-value=1.2e-05 Score=78.85 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=46.4
Q ss_pred cEEEEE-----EeeEEEEEecCCCcceeEEEEEceecc--cccc-----------cc----hhhhhCCCCEEEEEEEEEe
Q 026737 60 DIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKID 117 (234)
Q Consensus 60 ~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels--~~~~-----------~~----~~~~~~vGd~v~vkVl~id 117 (234)
+++.|+ ++|+||.|.. .|++|+||+++++ .+++ .+ ....|++||.|+|+|+.+|
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~----~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd 746 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPK----FGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 746 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETT----TTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC---
T ss_pred eEEEEEEEEEECCeEEEEEeC----CCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEE
Confidence 688887 9999999972 3799999999996 4331 12 2477999999999999999
Q ss_pred CC---CCeEEEEEe
Q 026737 118 RE---KSRITLSIK 128 (234)
Q Consensus 118 ~~---~~ri~LS~K 128 (234)
.+ ++||.||+|
T Consensus 747 ~~~~~~~kI~lslk 760 (760)
T 2vnu_D 747 DPITSKRKAELLLK 760 (760)
T ss_dssp -----CCEEEC---
T ss_pred CccccCCcEEEEeC
Confidence 87 699999986
No 65
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=97.79 E-value=3.8e-05 Score=65.81 Aligned_cols=74 Identities=8% Similarity=-0.106 Sum_probs=57.9
Q ss_pred hhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Eccccccccccccccccc
Q 026737 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLW 180 (234)
Q Consensus 102 ~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~ 180 (234)
..++||.|.++|.++.. + |+||++..+.+|++ +|+++.. +
T Consensus 71 ~p~~GDiV~G~V~~v~~-----------------------~------ga~VdI~~~~~GlL~isei~~~----------~ 111 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEI-----------------------Y------GWVVDIKAPYKAYLPASNLLGR----------S 111 (251)
T ss_dssp CCCTTCEEEEEEEEECS-----------------------S------EEEEECSSSSCEEEEHHHHHTS----------C
T ss_pred CCCCCCEEEEEEEEEeC-----------------------c------eEEEEcCCCeEEEEEHHHhcCC----------c
Confidence 35899999999999864 3 89999988999999 7887421 1
Q ss_pred cccCCCCCcceeeeeeCCCEEEEEEeeecc---chhhhccc
Q 026737 181 LSNAPPSGKKFTLLARAGRQVQEIQLSHSL---IRKASKRH 218 (234)
Q Consensus 181 ~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~---i~ls~K~~ 218 (234)
. +.. .++...+++||.|+|+|++++. +.||+|+.
T Consensus 112 ~---~~~-~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~ 148 (251)
T 2je6_I 112 I---NVG-EDLRRYLDVGDYVIARIENFDRSIDPVLSVKGK 148 (251)
T ss_dssp C---CTT-CCCSSSCCTTCEEEEEEEEEETTEEEEEECCST
T ss_pred c---ccc-cchhhcCCCCCEEEEEEEEECCCCcEEEEEccc
Confidence 1 111 3466689999999999999985 88888764
No 66
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.77 E-value=1.4e-05 Score=80.34 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=54.0
Q ss_pred CcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecc--cccc-----------cc----hhhhhCCCCEEEEEEEEE
Q 026737 59 EDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKI 116 (234)
Q Consensus 59 G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels--~~~~-----------~~----~~~~~~vGd~v~vkVl~i 116 (234)
|+++.|+ +||+||.|.. .|++|+||+++++ .+++ .+ ....|++||.|+|+|..+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~----~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~v 962 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPK----FGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSV 962 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTT----TCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCC
T ss_pred ceEEEEEEEEEcCCeEEEEEcC----CCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEE
Confidence 8899998 9999999972 3799999999997 4431 12 346799999999999999
Q ss_pred eCC---CCeEEEEEe
Q 026737 117 DRE---KSRITLSIK 128 (234)
Q Consensus 117 d~~---~~ri~LS~K 128 (234)
|.+ ++||.||+|
T Consensus 963 d~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 963 MDPITSKRKAELLLK 977 (977)
T ss_dssp CCSSSCCCCCCEEEC
T ss_pred cCcccCCCceEEEeC
Confidence 864 389999987
No 67
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.74 E-value=2e-05 Score=66.22 Aligned_cols=64 Identities=8% Similarity=0.090 Sum_probs=51.3
Q ss_pred hcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccc--------------cchhhhhCCCCEEEEEE
Q 026737 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--------------QDIRDILNEGDEVRVKV 113 (234)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~--------------~~~~~~~~vGd~v~vkV 113 (234)
.-+..+|+++.|+ +||+||+|.+ .++|++|++++..++. ++....|++||.|+++|
T Consensus 76 ~f~p~vGEv~~G~Is~Vt~fGifVeL~g-----~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV 150 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSLLG-----IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECTT-----SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEE
T ss_pred EecCCCCCEEEEEEEEEccCcEEEEccC-----ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEE
Confidence 4568899999999 9999999951 4899999999976553 22345699999999999
Q ss_pred EEEeCCCC
Q 026737 114 IKIDREKS 121 (234)
Q Consensus 114 l~id~~~~ 121 (234)
.+++...+
T Consensus 151 ~~v~~~~~ 158 (218)
T 2ckz_B 151 EREVFVDV 158 (218)
T ss_dssp EEEEECCC
T ss_pred EEEEcccC
Confidence 99997543
No 68
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=97.74 E-value=9.3e-05 Score=59.60 Aligned_cols=70 Identities=6% Similarity=-0.111 Sum_probs=47.3
Q ss_pred CCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Eccccccccccccccccccc
Q 026737 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWLS 182 (234)
Q Consensus 104 ~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~~ 182 (234)
.+|+.+.++|.++.. + |+||++.+ ++||+ +|++. +.....+.-..|.-
T Consensus 82 ~~Gev~~G~V~~v~~-----------------------f------G~FV~l~~-~dglvhis~l~-~~~~~d~~~~~~~~ 130 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQ-----------------------H------GFEVQVGP-MKVFVTKHLMP-QDLTFNAGSNPPSY 130 (171)
T ss_dssp CTTCEEEEEEEEEET-----------------------T------EEEEEETT-EEEEEEGGGSC-TTCEECC-----CE
T ss_pred CCCCEEEEEEEEEec-----------------------C------EEEEEecC-eEEEEEHHHCC-CCceECcccCceEE
Confidence 579999999988864 4 99999988 99999 78874 22110000011111
Q ss_pred cCCCCCcceeeeeeCCCEEEEEEeeecc
Q 026737 183 NAPPSGKKFTLLARAGRQVQEIQLSHSL 210 (234)
Q Consensus 183 ~~~~~~~~~~~~~~~G~~v~~~vl~~d~ 210 (234)
... ..+++.||.|+++|+++|.
T Consensus 131 ~~~------~~~~~~Gd~V~vkV~~vd~ 152 (171)
T 1y14_B 131 QSS------EDVITIKSRIRVKIEGCIS 152 (171)
T ss_dssp ECS------SCEECTTCEEEEEEEEEEE
T ss_pred ecc------ceEECCCCEEEEEEEEEEc
Confidence 110 1479999999999999985
No 69
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.72 E-value=1.9e-05 Score=69.62 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=56.4
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccc----cc------cchhhhhCCCCEEEEEEEEEeCC
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LI------QDIRDILNEGDEVRVKVIKIDRE 119 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~----~~------~~~~~~~~vGd~v~vkVl~id~~ 119 (234)
.+++|++|.|+ .+|+||+|. ...+|++|+|+++.. +. .+..+.|++||.|.|+|++++.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~-----s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~- 165 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETN-----SRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS- 165 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECS-----SSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-
T ss_pred CCCCCCEEEEEEEEEeCceEEEEEC-----CCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-
Confidence 57999999998 899999997 247899999998753 22 2456889999999999999995
Q ss_pred CCeEEEEEee
Q 026737 120 KSRITLSIKQ 129 (234)
Q Consensus 120 ~~ri~LS~K~ 129 (234)
.+++.||+|+
T Consensus 166 ~~~i~LStr~ 175 (308)
T 2nn6_H 166 DGAVSLHTRS 175 (308)
T ss_dssp TTEEEEECCS
T ss_pred CCCEEEEecC
Confidence 7899999985
No 70
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.65 E-value=8.3e-05 Score=62.83 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=56.2
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWL 181 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~ 181 (234)
.++||.|.++|.++.. + |+||++....+|++ +|+++... +.
T Consensus 55 p~~GDiV~G~V~~v~~-----------------------~------~a~V~I~~~~~g~l~isev~~~~---------~~ 96 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAA-----------------------N------GWAVDIYSPYQAFLPVSENPEMK---------PN 96 (229)
T ss_dssp CCTTCEEEEEEEEECS-----------------------S------EEEEECSSSSCEEEEGGGCTTCC---------TT
T ss_pred CCCCCEEEEEEEEEeC-----------------------C------eEEEEeCCCeEEEEEHHHccccc---------cc
Confidence 5889999999999864 3 88999988899999 78774111 11
Q ss_pred ccCCCCCcceeeeeeCCCEEEEEEeeecc---chhhhccc
Q 026737 182 SNAPPSGKKFTLLARAGRQVQEIQLSHSL---IRKASKRH 218 (234)
Q Consensus 182 ~~~~~~~~~~~~~~~~G~~v~~~vl~~d~---i~ls~K~~ 218 (234)
.++...+++||.|.|+|++++. +.||+|+.
T Consensus 97 -------~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~ 129 (229)
T 2ba0_A 97 -------KKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDR 129 (229)
T ss_dssp -------SCGGGTCCTTCEEEEEEEEECTTCCEEEECCSS
T ss_pred -------cchhcccCCCCEEEEEEEEECCCCcEEEEEccc
Confidence 3455689999999999999975 88888764
No 71
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=97.57 E-value=8.9e-05 Score=62.83 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=56.5
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWL 181 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~ 181 (234)
.++||.|.++|.++.. + |+||++..+.+|++ +|+++. ++.
T Consensus 64 p~~GDiV~G~V~~v~~-----------------------~------~~~V~I~~~~~g~l~isei~~-~~~--------- 104 (235)
T 2z0s_A 64 PQAGDVVIGLIQSVGI-----------------------M------NWFVDINSPYVAVLSVQDFLG-RPF--------- 104 (235)
T ss_dssp CCTTCCEEEEEEEECS-----------------------S------EEEEECSSSSCEEEEHHHHHT-SCC---------
T ss_pred CCCCCEEEEEEEEEeC-----------------------C------eEEEEeCCCeEEEEEHHHhCC-Ccc---------
Confidence 5789999999988864 3 89999988999999 788742 111
Q ss_pred ccCCCCCcceeeeeeCCCEEEEEEeeecc---chhhhccc
Q 026737 182 SNAPPSGKKFTLLARAGRQVQEIQLSHSL---IRKASKRH 218 (234)
Q Consensus 182 ~~~~~~~~~~~~~~~~G~~v~~~vl~~d~---i~ls~K~~ 218 (234)
+....++...+++||.|.|+|++++. +.||+|+.
T Consensus 105 ---~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~~ 141 (235)
T 2z0s_A 105 ---NPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGE 141 (235)
T ss_dssp ---CTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSS
T ss_pred ---ccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEecc
Confidence 01113456689999999999999975 88888764
No 72
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.54 E-value=8.5e-05 Score=60.30 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCCcc-eeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEE
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLY-HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~-g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS 126 (234)
.+++|++|.|. .++++|+|+ + ..+|++|++++. ...++.+..|++||.|.|+|.+++. ...+.||
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~-----~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Lt 74 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQ-----NFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIE 74 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESS-----TTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEE
T ss_pred cCCCcCEEEEEEEEEECcEEEEEEC-----CCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEE
Confidence 46899999999 789999997 4 589999999876 3346677889999999999999986 5688888
No 73
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=97.52 E-value=0.00027 Score=56.78 Aligned_cols=70 Identities=7% Similarity=0.075 Sum_probs=46.4
Q ss_pred CCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Eccccccccccc--cccccc
Q 026737 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVS--QDLQLW 180 (234)
Q Consensus 104 ~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~--~~~~~~ 180 (234)
.+|+.+.++|.++.. + |+||+|. .++||+ +|++. +..... +....|
T Consensus 80 ~~Gev~~G~V~~v~~-----------------------f------G~fV~l~-~~~glvhis~l~-~~~~~d~~~~~~~~ 128 (172)
T 2c35_B 80 FKGEVVDAVVTQVNK-----------------------V------GLFTEIG-PMSCFISRHSIP-SEMEFDPNSNPPCY 128 (172)
T ss_dssp CTTCEEEEEEEEEET-----------------------T------EEEEEET-TEEEEEEGGGSC-TTEEEESSSSSCEE
T ss_pred CCCCEEEEEEEEEeC-----------------------C------EEEEEEC-CEEEEEEHHHCC-CCcEECCCCCccEE
Confidence 478888888877764 4 9999995 677999 78874 221100 000133
Q ss_pred cccCCCCCcceeeeeeCCCEEEEEEeeecc
Q 026737 181 LSNAPPSGKKFTLLARAGRQVQEIQLSHSL 210 (234)
Q Consensus 181 ~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~ 210 (234)
... +-...++.||.|+++|+++|.
T Consensus 129 ~~~------~~~~~~~~Gd~V~vkV~~vd~ 152 (172)
T 2c35_B 129 KTM------DEDIVIQQDDEIRLKIVGTRV 152 (172)
T ss_dssp EET------TSCSEEETTCEEEEEEEEEEE
T ss_pred EeC------CCCEEECCCCEEEEEEEEEEc
Confidence 321 113489999999999999985
No 74
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.34 E-value=0.00059 Score=58.20 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=53.4
Q ss_pred CCCCcEEEEE--E-------eeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCC--CeEE
Q 026737 56 VNVEDIFVGR--D-------YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK--SRIT 124 (234)
Q Consensus 56 ~~~G~iv~g~--~-------~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~--~ri~ 124 (234)
-++|++++|+ . ..+||+|+. +..+.+|++|.+|+. |.+.|++||.|+|.|++++... .+|.
T Consensus 5 ~r~GeIVtG~V~r~~~~v~~~~ViVdlG~--~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIi 76 (251)
T 2asb_A 5 TREGEIVAGVIQRDSRANARGLVVVRIGT--ETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLIT 76 (251)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECS--SSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEE
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCC--CCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEE
Confidence 4689999998 2 269999971 001489999999876 5678999999999999999754 7899
Q ss_pred EEEeec
Q 026737 125 LSIKQL 130 (234)
Q Consensus 125 LS~K~~ 130 (234)
||....
T Consensus 77 LSRt~p 82 (251)
T 2asb_A 77 LSRTHP 82 (251)
T ss_dssp EESSCH
T ss_pred EEeccH
Confidence 998643
No 75
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=97.22 E-value=0.00023 Score=57.38 Aligned_cols=52 Identities=6% Similarity=-0.028 Sum_probs=35.1
Q ss_pred ceeeeecCCceEEE-Ecccccccccccc--ccccccccCCCCCcceeeeeeCCCEEEEEEeeecc
Q 026737 149 PYLKSFYKKMDDVR-ITRQGFEKRVVSQ--DLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL 210 (234)
Q Consensus 149 G~fV~l~~gi~Gl~-~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~ 210 (234)
|+||+|. .++||+ +|++. +...-.+ ....| . +....++.||+|+++|+++|.
T Consensus 99 G~FV~l~-~~~glVh~s~l~-~~~~~d~~~~~~~~-~-------~~~~~~~~Gd~VrvkV~~vd~ 153 (172)
T 3h0g_G 99 GFFANIG-PLNVFVSSHLVP-PDMKFDPTANPPNY-S-------GEDQVIEKGSNVRLKIVGTRT 153 (172)
T ss_dssp EEECCBT-TBCCEEEGGGSC-TTCCCBSSSSSCBE-E-------SSSCEECSSCCEEEEEEEEEE
T ss_pred eEEEEeC-CeEEEEEHHHCC-CccccCcccccceE-e-------cCCcEECCCCEEEEEEEEEEC
Confidence 9999996 588999 78873 3221111 01123 1 123489999999999999985
No 76
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=96.70 E-value=0.00017 Score=64.31 Aligned_cols=91 Identities=14% Similarity=-0.024 Sum_probs=58.0
Q ss_pred hhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchh-----hhhccc-ccc-----cc------ceeeeecCCceEEE-
Q 026737 101 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE-----TLEKVI-PQG-----LE------PYLKSFYKKMDDVR- 162 (234)
Q Consensus 101 ~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~-----~~~~~~-~~G-----~~------G~fV~l~~gi~Gl~- 162 (234)
..+.+||.+++.|...|. .+....+.|+....-+.+ .++.+. ..| ++ |+||++. +++|++
T Consensus 85 ~~~~vGd~ie~~I~~~df-gR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp 162 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNF-GRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG-KLETRLP 162 (344)
T ss_dssp TTCCTTCEEEEECCCCCS-SSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET-TEEEEEE
T ss_pred ccccCCCEEEEEEccccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC-CeEEEEe
Confidence 347899999999988775 333333435433222111 122211 123 22 7999996 999999
Q ss_pred EccccccccccccccccccccCCCCCcceeeeeeCCCEEEEEEeeecc------chhhhc
Q 026737 163 ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL------IRKASK 216 (234)
Q Consensus 163 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~------i~ls~K 216 (234)
.+++. +.+.+++||+|+|.|+++++ |.||.+
T Consensus 163 ~sE~i-----------------------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 163 KKEWI-----------------------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp GGGSC-----------------------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred HHHcC-----------------------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 56651 12378999999999999984 666655
No 77
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=96.50 E-value=0.0053 Score=59.10 Aligned_cols=74 Identities=8% Similarity=-0.042 Sum_probs=50.3
Q ss_pred CCCC--EEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeec-CCceEEE-Ecccccccccccccccc
Q 026737 104 NEGD--EVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFY-KKMDDVR-ITRQGFEKRVVSQDLQL 179 (234)
Q Consensus 104 ~vGd--~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~-~gi~Gl~-~s~~~~~~~~~~~~~~~ 179 (234)
++|+ .+.++|.++.. + |+||+|. .|++||+ +|++...+ .
T Consensus 557 ~vGe~~~f~g~V~~V~~-----------------------~------G~fV~L~~~gieGlVhis~l~~~~--------d 599 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISR-----------------------G------GMRVRLVDNGAIAFIPAPFLHAVR--------D 599 (644)
T ss_dssp GTTSCCCEEEEEEEEET-----------------------T------EEEEEETTTCCEEEEEGGGTCSCG--------G
T ss_pred ccCCCceEEEEEEEEeC-----------------------C------ceEEEEcCCcEEEEEEchhccCcC--------c
Confidence 5788 88888888753 4 9999994 6999999 88874200 1
Q ss_pred ccccCCCCCc----ceeeeeeCCCEEEEEEeeecc----chhhh
Q 026737 180 WLSNAPPSGK----KFTLLARAGRQVQEIQLSHSL----IRKAS 215 (234)
Q Consensus 180 ~~~~~~~~~~----~~~~~~~~G~~v~~~vl~~d~----i~ls~ 215 (234)
|.... .... +....++.||+|+|+|+++|. |.|++
T Consensus 600 ~~~~d-~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~~I~~~l 642 (644)
T 2id0_A 600 ELVCS-QENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642 (644)
T ss_dssp GEEEE-TTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEEEEE
T ss_pred eeEEc-ccccEEEecCCCEeCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 21100 0001 124579999999999999985 55543
No 78
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=96.46 E-value=0.013 Score=48.38 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=48.7
Q ss_pred CCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Eccccccccccccccccccc
Q 026737 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWLS 182 (234)
Q Consensus 104 ~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~~ 182 (234)
.+|+.+.++|.++.. + |+||+| +.++||+ +|++..+...-.++-..|+-
T Consensus 80 ~~GEv~~G~Vs~vt~-----------------------~------GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~ 129 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSE-----------------------E------GIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVW 129 (203)
T ss_dssp CTTCEEEEEEEEEET-----------------------T------EEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEE
T ss_pred CCCCEEEEEEEEEec-----------------------c------EEEEEE-eCceEEEEcHHhCCCCceECccCceEEe
Confidence 467888888877764 3 999999 5799999 77775443211111112322
Q ss_pred c--CCCCCcceeeeeeCCCEEEEEEeeecc
Q 026737 183 N--APPSGKKFTLLARAGRQVQEIQLSHSL 210 (234)
Q Consensus 183 ~--~~~~~~~~~~~~~~G~~v~~~vl~~d~ 210 (234)
. .+.-+.+-...++.||.|+++|+.++.
T Consensus 130 ~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~ 159 (203)
T 3ayh_B 130 KIEGEDGSEGTELYFDIDEEIRFQIESEDF 159 (203)
T ss_dssp EECCCTTSCCEEEECCTTCEEEEEEEEEEE
T ss_pred ecccccccccCCcEEcCCCEEEEEEEEEEc
Confidence 1 000002235689999999999999984
No 79
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.012 Score=49.13 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=48.8
Q ss_pred CCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Eccccccccccccccccccc
Q 026737 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWLS 182 (234)
Q Consensus 104 ~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~~ 182 (234)
.+|+.+.++|.++.. + |+||+|++.++||+ +|++..+...-.++-..|.-
T Consensus 80 ~vGEv~~G~Is~Vt~-----------------------f------GifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg 130 (218)
T 2ckz_B 80 FLGEIVTGWISKCTA-----------------------E------GIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIW 130 (218)
T ss_dssp CTTCEEEEEEEEEET-----------------------T------EEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEE
T ss_pred CCCCEEEEEEEEEcc-----------------------C------cEEEEccCccceEEEcHHHCCCCcEEcCcCceEEe
Confidence 468888888887764 4 99999976789999 77764333211111112322
Q ss_pred cCCCCCcceeeeeeCCCEEEEEEeeecc
Q 026737 183 NAPPSGKKFTLLARAGRQVQEIQLSHSL 210 (234)
Q Consensus 183 ~~~~~~~~~~~~~~~G~~v~~~vl~~d~ 210 (234)
.-+ .+-...++.||.|+++|..++.
T Consensus 131 ~~~---e~t~~~~~~Gd~VrvrV~~v~~ 155 (218)
T 2ckz_B 131 PMD---EETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp ECC-----CEEEECTTCEEEEEEEEEEE
T ss_pred ecc---ccCCcEEcCCCEEEEEEEEEEc
Confidence 110 1124579999999999999985
No 80
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=96.12 E-value=0.013 Score=54.89 Aligned_cols=76 Identities=8% Similarity=0.015 Sum_probs=52.3
Q ss_pred hhhhhCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccc
Q 026737 99 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDL 177 (234)
Q Consensus 99 ~~~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~ 177 (234)
......+|+.++++|.++.+ .+. ||||++.+|.+||+ +|++++.......+.
T Consensus 39 ~~~~~~vGnIY~GkV~rv~p-----------------------~~~----aAFVdiG~gk~gfLhisei~~~~~~~~~~~ 91 (517)
T 2bx2_L 39 PGHEQKKANIYKGKITRIEP-----------------------SLE----AAFVDYGAERHGFLPLKEIAREYFPANYSA 91 (517)
T ss_dssp SSSCCCTTCEEEEEEEEEET-----------------------TTT----EEEEESSSSSCEEEEGGGSCGGGCC-----
T ss_pred CCCcCCCCCEEEEEEEEecc-----------------------CCc----eEEEEeCCCcEEEEEHHHcChhhhcccccc
Confidence 33445789999999998875 112 99999999999999 788743321000000
Q ss_pred ccccccCCCCCcceeeeeeCCCEEEEEEeeec
Q 026737 178 QLWLSNAPPSGKKFTLLARAGRQVQEIQLSHS 209 (234)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d 209 (234)
....++++++++||.|.|.|++..
T Consensus 92 --------~~~~~i~d~lk~Gq~VlVQV~Ke~ 115 (517)
T 2bx2_L 92 --------HGRPNIKDVLREGQEVIVQIDKEE 115 (517)
T ss_dssp ----------CCCGGGTCCTTCEEEEEEEECC
T ss_pred --------ccccchhhhccCCCEEEEEEEeec
Confidence 001346678999999999999975
No 81
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.018 Score=57.88 Aligned_cols=80 Identities=11% Similarity=-0.085 Sum_probs=50.4
Q ss_pred CCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecC-CceEEE-Ecccc--cccccccccccccc
Q 026737 106 GDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYK-KMDDVR-ITRQG--FEKRVVSQDLQLWL 181 (234)
Q Consensus 106 Gd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~-gi~Gl~-~s~~~--~~~~~~~~~~~~~~ 181 (234)
|+...+.|+++.. + |+||.|.+ |++||+ +|++. .+...-.++ +-.+
T Consensus 887 ge~~~g~V~~V~~-----------------------~------G~fV~L~~~giEGlVhis~L~~~~d~y~fde~-~~~L 936 (977)
T 2wp8_J 887 ESTETGYVIKVFN-----------------------N------GIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEV-EYKL 936 (977)
T ss_dssp TCEEEEEEEEECS-----------------------S------EEEEECTTTCCEEEEEGGGTCSCGGGCEEETT-TTEE
T ss_pred ceEEEEEEEEEcC-----------------------C------eEEEEEcCCCeEEEEEeccccCCCceeEEccc-ccEE
Confidence 8888888887742 3 99999987 999999 88874 221100000 0001
Q ss_pred ccCCCCCcceeeeeeCCCEEEEEEeeecc-------chhhhc
Q 026737 182 SNAPPSGKKFTLLARAGRQVQEIQLSHSL-------IRKASK 216 (234)
Q Consensus 182 ~~~~~~~~~~~~~~~~G~~v~~~vl~~d~-------i~ls~K 216 (234)
. .....+.....++.||+|+|+|+.+|. |+|+||
T Consensus 937 ~-g~~~~g~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 937 T-FVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLLK 977 (977)
T ss_dssp E-ECCTTCCSCEEEETTCEEEEEECCCCCSSSCCCCCCEEEC
T ss_pred E-eecCCCccCcEEccCCEEEEEEEEEcCcccCCCceEEEeC
Confidence 0 000000023589999999999998852 777776
No 82
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=95.47 E-value=0.025 Score=55.47 Aligned_cols=66 Identities=9% Similarity=-0.102 Sum_probs=35.1
Q ss_pred ceeeeecC-CceEEE-Ecccc--ccccccccccccccccCCCCCcceeeeeeCCCEEEEEEeeecc-------chhhhc
Q 026737 149 PYLKSFYK-KMDDVR-ITRQG--FEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL-------IRKASK 216 (234)
Q Consensus 149 G~fV~l~~-gi~Gl~-~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~-------i~ls~K 216 (234)
|+||.|.+ |++||+ +|++. .+...-.++ +-.+..... .......++.||+|+|+|+.+|. |+|++|
T Consensus 684 G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~-~~~l~g~~~-~~~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~lslk 760 (760)
T 2vnu_D 684 GIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEV-EYKLTFVPT-NSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLLK 760 (760)
T ss_dssp EEEEEETTTTEEEEEEHHHHCSCGGGCEEETT-TTEEEECCT-TCSSCEEEETTCEEEEEEC--------CCEEEC---
T ss_pred eEEEEEeCCCcEEEEEeccccCCCceeEEccc-ccEEEEecC-CCccCcEEecCCEEEEEEEEEECccccCCcEEEEeC
Confidence 99999987 999999 78874 221110000 000000000 00024589999999999999862 777775
No 83
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.28 E-value=0.011 Score=51.34 Aligned_cols=66 Identities=8% Similarity=-0.033 Sum_probs=54.1
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEE
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~ 127 (234)
.+++|++|.|+ ...+.|+|. ....|++|.+++. ...+..+..|++||.|.|+|++++. .+...||.
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~-----s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc 194 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVG-----GSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVC 194 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECS-----SSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEEC-----CCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEe
Confidence 47999999999 456899997 3578999999866 2345677889999999999999985 56788887
No 84
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=94.89 E-value=0.038 Score=51.19 Aligned_cols=60 Identities=13% Similarity=0.298 Sum_probs=48.0
Q ss_pred CCCCcEEEEEEeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEE
Q 026737 56 VNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (234)
Q Consensus 56 ~~~G~iv~g~~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~ 127 (234)
-..|+++. |++|++. +.+|+||++++..+. .....|++||.|+|+|.++|..+++|.+..
T Consensus 401 ~~~g~~f~----g~vv~l~------~~~glV~v~~l~~d~--~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 401 AQPERVWD----AVVVDRR------GAQATLLIPDLAFDV--QVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp TCTTCCEE----EEEEEEE------TTEEEEEEGGGTEEE--EEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred hCCCCEEE----EEEEEEe------CcEEEEEECCCCeEE--ecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 36788887 4678875 368999999998652 223468999999999999999999998865
No 85
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.71 E-value=0.012 Score=51.57 Aligned_cols=79 Identities=9% Similarity=0.078 Sum_probs=50.5
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecCCceEEE-Ecccccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWL 181 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~ 181 (234)
.++||.|.++|.++.. + ++||+|....+|++ +|+++.+.... +.
T Consensus 93 P~vGDvViG~Vt~V~~-----------------------~------~a~VdI~s~~~~~l~iS~v~f~gg~i------R~ 137 (308)
T 2nn6_H 93 GEVGDIVVGRITEVQQ-----------------------K------RWKVETNSRLDSVLLLSSMNLPGGEL------RR 137 (308)
T ss_dssp CCSSBCCCEEEEEEET-----------------------T------EEEEECSSSSCEEEESSCCC--------------
T ss_pred CCCCCEEEEEEEEEeC-----------------------c------eEEEEECCCcCCceechhhcccccee------ec
Confidence 4667777777777653 2 88999977788888 78775432110 00
Q ss_pred ccCCCCCcceeeeeeCCCEEEEEEeeecc---chhhhcc
Q 026737 182 SNAPPSGKKFTLLARAGRQVQEIQLSHSL---IRKASKR 217 (234)
Q Consensus 182 ~~~~~~~~~~~~~~~~G~~v~~~vl~~d~---i~ls~K~ 217 (234)
... ....++...+++||.|.|+|++++. +.|++|+
T Consensus 138 ~~~-~D~~~m~~~l~vGDlV~ArVisv~~~~~i~LStr~ 175 (308)
T 2nn6_H 138 RSA-EDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRS 175 (308)
T ss_dssp ------CHHHHHHSCSSCEECCEEEEEETTTEEEEECCS
T ss_pred ccc-hhhhhhhccCCCCCEEEEEEEEcCCCCCEEEEecC
Confidence 000 0013455689999999999999974 8888774
No 86
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.39 E-value=0.054 Score=48.54 Aligned_cols=72 Identities=11% Similarity=-0.036 Sum_probs=49.3
Q ss_pred CCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecC---CceEEE-Eccccccccccccccccc
Q 026737 105 EGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYK---KMDDVR-ITRQGFEKRVVSQDLQLW 180 (234)
Q Consensus 105 vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~---gi~Gl~-~s~~~~~~~~~~~~~~~~ 180 (234)
.|+.|.+.|...+. ..++. ++||+|.. +++|++ .+++.
T Consensus 130 ~GeIVtG~V~r~~~-------------------~v~~~------~v~VdLG~~~~k~EgiLP~~Eqi------------- 171 (366)
T 1k0r_A 130 EGEIVAGVIQRDSR-------------------ANARG------LVVVRIGTETKASEGVIPAAEQV------------- 171 (366)
T ss_dssp TTCEEEEEEECCHH-------------------HHHTT------CEEEEECCSSSCEEEEECGGGSC-------------
T ss_pred CCCEEEEEEEEccc-------------------cccCC------eEEEEeCCCccceEEEEcHHHcC-------------
Confidence 89999999977211 01112 68999975 599999 56541
Q ss_pred cccCCCCCcceeeeeeCCCEEEEEEeeecc----chhhhcccccchhH
Q 026737 181 LSNAPPSGKKFTLLARAGRQVQEIQLSHSL----IRKASKRHCNEYWN 224 (234)
Q Consensus 181 ~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~----i~ls~K~~~~~p~~ 224 (234)
+.+.++.||+|+|.|+++++ ..+.+.+..|+...
T Consensus 172 ----------P~E~~~~GDrVkvyV~~V~~~~kgpqI~LSRT~p~lv~ 209 (366)
T 1k0r_A 172 ----------PGESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLVR 209 (366)
T ss_dssp ----------TTCCCCTTCEEEEEEEEEECCSSSCEEEEESSCHHHHH
T ss_pred ----------CCccCCCCCEEEEEEEEEecCCCccEEEEEeCChHHHH
Confidence 13478999999999999986 44555555554443
No 87
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=92.51 E-value=0.16 Score=43.18 Aligned_cols=46 Identities=9% Similarity=-0.055 Sum_probs=34.4
Q ss_pred ceeeeecC---CceEEE-EccccccccccccccccccccCCCCCcceeeeeeCCCEEEEEEeeecc------chhhhcc
Q 026737 149 PYLKSFYK---KMDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL------IRKASKR 217 (234)
Q Consensus 149 G~fV~l~~---gi~Gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~------i~ls~K~ 217 (234)
.+||+|.. +.+|++ .+|+. +.+.++.||+|+|.|++++. |-||...
T Consensus 26 ~ViVdlG~~~~k~EgiLP~~Eqi-----------------------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSRt~ 81 (251)
T 2asb_A 26 LVVVRIGTETKASEGVIPAAEQV-----------------------PGESYEHGNRLRCYVVGVTRGAREPLITLSRTH 81 (251)
T ss_dssp CEEEEECSSSSCEEEEECGGGSC-----------------------TTCCCCTTCEEEEEEEEEECCSSSCEEEEESSC
T ss_pred eEEEEeCCCCcceEEEEcHHHcC-----------------------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEecc
Confidence 56899965 599999 45431 23478999999999999975 6666553
No 88
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=92.03 E-value=0.44 Score=34.14 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=46.6
Q ss_pred hcCCCCCcEEEEE----EeeEEEEEecCCCcceeEEEEEce-ecccccccchhhhhCCCCEEEEEEEEEeC
Q 026737 53 SSRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDR 118 (234)
Q Consensus 53 ~~~~~~G~iv~g~----~~G~fV~l~~~~g~~g~~glv~is-els~~~~~~~~~~~~vGd~v~vkVl~id~ 118 (234)
.-++.+|++.+|. ++-.+|.|.+. +|.+|++--+ ++-.++..+.++.+ +|..|+++|+.+|.
T Consensus 27 ~~~~~~g~VtkGiVy~kd~~fyV~L~dY---~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 27 AMDLSPGSVHEGIVYFKDGIFKVRLLGY---EGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADG 93 (102)
T ss_dssp CCCCCSSCEEEEEEEEETTEEEEECTTT---SSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECS
T ss_pred ccccCCCceEeeEEEEeCCEEEEEecCC---CCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEecc
Confidence 3468999999999 44568888743 2688887533 44455667777777 79999999999986
No 89
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=88.63 E-value=1.2 Score=35.69 Aligned_cols=65 Identities=14% Similarity=-0.091 Sum_probs=47.7
Q ss_pred hCCCCEEEEEEEEEeCCCCeEEEEEeecccCcchhhhhccccccccceeeeecC-CceEEE-Eccccccccccccccccc
Q 026737 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQGLEPYLKSFYK-KMDDVR-ITRQGFEKRVVSQDLQLW 180 (234)
Q Consensus 103 ~~vGd~v~vkVl~id~~~~ri~LS~K~~~~~p~~~~~~~~~~~G~~G~fV~l~~-gi~Gl~-~s~~~~~~~~~~~~~~~~ 180 (234)
.++||.|.++|.++.. . +++|++.+ -.+|++ +|.+. ..
T Consensus 5 P~~gDvViG~V~~v~~-----------------------~------~~~VdI~~~~~~a~L~~s~~~--g~--------- 44 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFS-----------------------D------SYKVSLQNFSSSVSLSYMAFP--NA--------- 44 (175)
T ss_dssp CCTTCEEEEEEEEECS-----------------------S------EEEEESSTTSCCEEEETTSST--TC---------
T ss_pred CCCcCEEEEEEEEEEC-----------------------c------EEEEEECCCCccEEEEHHHCC--ch---------
Confidence 4679999999988753 2 67899987 799998 56541 10
Q ss_pred cccCCCCCcceeeeeeCCCEEEEEEeeecc---chhh
Q 026737 181 LSNAPPSGKKFTLLARAGRQVQEIQLSHSL---IRKA 214 (234)
Q Consensus 181 ~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~---i~ls 214 (234)
. .+....+++||-|.|+|..++. +.|+
T Consensus 45 ~-------k~~r~~l~~GDlV~ArV~~~~~~~~~~Lt 74 (175)
T 2ja9_A 45 S-------KKNRPTLQVGDLVYARVCTAEKELEAEIE 74 (175)
T ss_dssp C-------SSSCCCCCTTCEEEEEEEECCTTSCCEEE
T ss_pred h-------hhhhccCCCCCEEEEEEEEecCCCceEEE
Confidence 0 2234478999999999999975 6676
No 90
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=66.03 E-value=6.5 Score=36.10 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=32.6
Q ss_pred ceeeeecCCceEEE-EccccccccccccccccccccCCCCCcceeeeeeCCCEEEEEEeeecc
Q 026737 149 PYLKSFYKKMDDVR-ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRQVQEIQLSHSL 210 (234)
Q Consensus 149 G~fV~l~~gi~Gl~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~vl~~d~ 210 (234)
|+|+++. +..|++ ++.+..+ .+....++.||+|+|+|.++|.
T Consensus 409 g~vv~l~-~~~glV~v~~l~~d-------------------~~~~~~~~lGd~V~V~v~~vd~ 451 (469)
T 2r7d_A 409 AVVVDRR-GAQATLLIPDLAFD-------------------VQVNTPAAPGTALQVQFADIDL 451 (469)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEE-------------------EEEECCCCTTCEEEEEEEEEET
T ss_pred EEEEEEe-CcEEEEEECCCCeE-------------------EecCCcCCCCCEEEEEEEEEcc
Confidence 8999986 668999 8887433 0112367999999999999996
No 91
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=64.46 E-value=19 Score=29.38 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=41.3
Q ss_pred hhcCCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccccchh------------hhhCCCCEEEEEEE
Q 026737 52 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR------------DILNEGDEVRVKVI 114 (234)
Q Consensus 52 ~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~------------~~~~vGd~v~vkVl 114 (234)
..-.+..|+++.|+ +.|+.+-+-+ -.+.+|+...+...+.-++. +--++|+.|+.+|.
T Consensus 123 iVFrPf~GevL~G~V~~~s~~~Ig~~~~G-----~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~ 197 (214)
T 2rf4_A 123 YVWQPQVGDVLEGYIFIQSASHIGLLIHD-----AFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVR 197 (214)
T ss_dssp EEECCCTTCEEEEEECCCCSSCEEEEETT-----TEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEE
T ss_pred EEEecCCCCEEEEEEEEECCCcEEEEEeC-----CEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEE
Confidence 44578999999999 5455553321 36789999887433211110 11236999999999
Q ss_pred EEeCCC
Q 026737 115 KIDREK 120 (234)
Q Consensus 115 ~id~~~ 120 (234)
+++...
T Consensus 198 ~~~~~~ 203 (214)
T 2rf4_A 198 NVHTTG 203 (214)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998643
No 92
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=61.27 E-value=8.4 Score=27.01 Aligned_cols=49 Identities=27% Similarity=0.249 Sum_probs=33.8
Q ss_pred CCCcEEEEE----EeeE-EEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEE
Q 026737 57 NVEDIFVGR----DYGA-FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (234)
Q Consensus 57 ~~G~iv~g~----~~G~-fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl 114 (234)
..+....|+ +.|. |+.-. +| +-+-|+|+|.+... ...++.||.|+..+.
T Consensus 14 ~~~~~~~G~Vk~f~kGfGFI~~d--dg--g~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFGFIETA--NH--DKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SSCCCEEEEEEEECSSEEEEECS--SS--SCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCCceeEEEEEEECCccEEecC--CC--CceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 356677787 3343 55544 22 58999999998755 145789999998774
No 93
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=56.32 E-value=19 Score=25.64 Aligned_cols=53 Identities=15% Similarity=-0.006 Sum_probs=38.8
Q ss_pred CCCCCcEEEEE-----EeeEEEEEecCCCcceeEEEEEceecccccc-----cc-hhhhhCCCCEEEEE
Q 026737 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----QD-IRDILNEGDEVRVK 112 (234)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~g~~glv~isels~~~~-----~~-~~~~~~vGd~v~vk 112 (234)
....|..+.|. +.++-|.+. .+..+.|+...+.|.+- +. +.+.+++||.|.++
T Consensus 30 ~~~~~~~~~AvV~~v~~~~~~v~~~-----~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 30 IGNSDDILAAVVLSATPGAVEAFRK-----NGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp SCTTTTCEEEEEEEEETTEEEEEET-----TSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCccCCeEEEEEEEeCCCeEEEEEc-----CCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 34457666665 557778775 24677899999999852 33 66779999999987
No 94
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=55.40 E-value=29 Score=26.75 Aligned_cols=49 Identities=33% Similarity=0.460 Sum_probs=33.4
Q ss_pred CCcEEEEE------EeeE-EEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEE
Q 026737 58 VEDIFVGR------DYGA-FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (234)
Q Consensus 58 ~G~iv~g~------~~G~-fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~i 116 (234)
.|...+|+ +.|. ||.-. +| +-+-|+|++.+... ..+..||.|+..+...
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~d--dG--g~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPA--DG--GPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEES--SS--CSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred cCCccceEEEEEeCCCCeEEeccC--CC--CccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 46667777 2233 55554 22 47999999998633 2588999999988653
No 95
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=52.31 E-value=4.5 Score=27.38 Aligned_cols=29 Identities=17% Similarity=0.058 Sum_probs=23.3
Q ss_pred ceeeeeeCCCEEEEEEeeecc--chhhhccc
Q 026737 190 KFTLLARAGRQVQEIQLSHSL--IRKASKRH 218 (234)
Q Consensus 190 ~~~~~~~~G~~v~~~vl~~d~--i~ls~K~~ 218 (234)
+..+.+..||.+++.|++++. ++||+.+=
T Consensus 7 k~GEsI~IGd~I~ItVl~v~g~~VrLGI~AP 37 (70)
T 2jpp_A 7 KVGESINIGDDITITILGVSGQQVRIGINAP 37 (70)
T ss_dssp ETTCEEEETTTEEEEEEEEETTEEEEEEECC
T ss_pred cCCCeEEECCCEEEEEEEEeCCEEEEEEECC
Confidence 345578899999999999976 88887653
No 96
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=50.02 E-value=23 Score=30.38 Aligned_cols=24 Identities=4% Similarity=-0.103 Sum_probs=19.1
Q ss_pred eeeeeCCCEEEEEEeeecc---chhhh
Q 026737 192 TLLARAGRQVQEIQLSHSL---IRKAS 215 (234)
Q Consensus 192 ~~~~~~G~~v~~~vl~~d~---i~ls~ 215 (234)
...|++||-|.|+|++++. ..|+.
T Consensus 168 r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 168 RPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp SSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred hhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 3478999999999999975 55554
No 97
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=49.35 E-value=5.3 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=24.2
Q ss_pred cceeeeeeCCCEEEEEEeeecc--chhhhccc
Q 026737 189 KKFTLLARAGRQVQEIQLSHSL--IRKASKRH 218 (234)
Q Consensus 189 ~~~~~~~~~G~~v~~~vl~~d~--i~ls~K~~ 218 (234)
++..+.+..||.+++.|++++. ++||+.+=
T Consensus 18 RK~GEsI~IGddI~ItVl~i~g~qVrLGI~AP 49 (73)
T 1vpz_A 18 RRVGETLMVGDDVTVTVLGVKGNQVRIGVNAP 49 (73)
T ss_dssp EETTCEEEETTTEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCCEEEeCCCEEEEEEEEeCCEEEEEEECC
Confidence 3455688999999999999976 88888653
No 98
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=49.16 E-value=64 Score=22.41 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=34.0
Q ss_pred CCCcEEEEE----EeeE-EEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEE
Q 026737 57 NVEDIFVGR----DYGA-FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115 (234)
Q Consensus 57 ~~G~iv~g~----~~G~-fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~ 115 (234)
.......|+ +.|. ||.-. +| +-+-|+|++.+... ...+..||.|...+..
T Consensus 14 s~~~~~~G~Vkwf~KGfGFI~~d--dg--g~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 14 SAALRETGVIEKLLTSYGFIQCS--ER--QARLFFHCSQYNGN-----LQDLKVGDDVEFEVSS 68 (89)
T ss_dssp SCCCEEEEEEEEECSSEEEEEET--TT--TEEEEEETTTCSSC-----TTTCCTTCCEEEEEEE
T ss_pred CcccccceEEEEEeCCeeEEecC--CC--CccEEEEhHHhhCc-----cCCCCCCCEEEEEEEE
Confidence 334566676 3343 55554 22 48999999998754 2457899999998855
No 99
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=48.48 E-value=5.7 Score=26.34 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=23.5
Q ss_pred ceeeeeeCCCEEEEEEeeecc--chhhhccc
Q 026737 190 KFTLLARAGRQVQEIQLSHSL--IRKASKRH 218 (234)
Q Consensus 190 ~~~~~~~~G~~v~~~vl~~d~--i~ls~K~~ 218 (234)
+..+.+..||.+++.|++++. ++||+.+=
T Consensus 9 k~GE~I~Igd~I~I~Vl~i~g~~VrlGI~AP 39 (63)
T 2bti_A 9 RVGETLMIGDEVTVTVLGVKGNQVRIGVNAP 39 (63)
T ss_dssp ETTCEEEETTTEEEEEEEEETTEEEEEEEEC
T ss_pred cCCCeEEeCCCEEEEEEEEeCCEEEEEEECC
Confidence 445578899999999999976 88888753
No 100
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=46.51 E-value=42 Score=22.74 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=24.3
Q ss_pred eeEEEEEceecccccccchhhhhCCCCEEEEEEEE
Q 026737 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115 (234)
Q Consensus 81 g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~ 115 (234)
+-+-|+|+|.+....-..--..+..||.|+..+..
T Consensus 31 g~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 31 KEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp TEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred CccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 58999999998754111111347799999988854
No 101
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=42.46 E-value=74 Score=21.24 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=26.7
Q ss_pred eeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026737 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (234)
Q Consensus 81 g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K 128 (234)
+-+ |+|+|.+.... .++.||.|+..+.. ++ ++.-...++
T Consensus 25 ~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~-g~-kG~~A~~V~ 63 (74)
T 2k5n_A 25 DNR-YFHVIKVANPD------LIKKDAAVTFEPTT-NN-KGLSAYAVK 63 (74)
T ss_dssp CEE-EEEGGGBSSGG------GCCTTCEEEEEEEE-CS-SSEEEEEEE
T ss_pred Cce-EEEHhHcccCC------CCCCCCEEEEEEEe-CC-CCceeEEEE
Confidence 456 99999987542 58899999998854 32 554444443
No 102
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=38.32 E-value=72 Score=20.60 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=24.1
Q ss_pred eeEEEEEceecccccccchhhhhCCCCEEEEEEEEE
Q 026737 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (234)
Q Consensus 81 g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~i 116 (234)
+-+-|+|+|.+...-. ..+..||.|+..+..-
T Consensus 23 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 23 GSDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEGGGBCSSSC----CCCCTTCEEEEEEEEE
T ss_pred CccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 5899999999875422 2367899999888543
No 103
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=37.64 E-value=52 Score=21.69 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=28.6
Q ss_pred EeeEEEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEEEE
Q 026737 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (234)
Q Consensus 66 ~~G~fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~i 116 (234)
.|| |+.-. +| +-+-|+|+|.+...-. ..+..||.|+..+..-
T Consensus 18 GfG-FI~~~--~g--~~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 18 GFG-FITPE--DG--SKDVFVHFSAIQTNGF----KTLAEGQRVEFEITNG 59 (71)
T ss_dssp TEE-EEEET--TC--CCCEEEEGGGBCCSSC----CCCCTTCEEEEEEEEE
T ss_pred CcE-EEecC--CC--CccEEEEhHHcccccC----cCCCCCCEEEEEEEEC
Confidence 355 55544 22 4789999999875422 2477999999988653
No 104
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=35.22 E-value=71 Score=21.14 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=23.8
Q ss_pred eeEEEEEceecccccccchhhhhCCCCEEEEEEEEE
Q 026737 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (234)
Q Consensus 81 g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~i 116 (234)
|-+-|+|+|.+...-. ..+..||.|+..+..-
T Consensus 23 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 23 DTDVFVHYTAINAKGF----RTLNEGDIVTFDVEPG 54 (73)
T ss_dssp SCCEEEEGGGBCSSSC----SSCCTTCEEEEEEECC
T ss_pred CCcEEEEhhhccccCC----CCCCCCCEEEEEEEEC
Confidence 4789999999875422 2377899999888543
No 105
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=34.83 E-value=7.6 Score=27.81 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=23.0
Q ss_pred cceeeeeeCCCEEEEEEeeecc--chhhhcc
Q 026737 189 KKFTLLARAGRQVQEIQLSHSL--IRKASKR 217 (234)
Q Consensus 189 ~~~~~~~~~G~~v~~~vl~~d~--i~ls~K~ 217 (234)
++..+.+..||.+++.|++++. ++||+.+
T Consensus 27 RK~GEsI~IGddI~ItVl~i~g~qVrLGI~A 57 (95)
T 1t3o_A 27 RKINEAIQIGADIEVKVIAVEGDQVKLGIDA 57 (95)
T ss_dssp CTTCCCEEETTTEEECCCEECSSCEEEEEEE
T ss_pred ccCCCeEEECCCEEEEEEEEeCCEEEEEEEC
Confidence 3455678899999999999976 8887764
No 106
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=34.32 E-value=95 Score=20.13 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.3
Q ss_pred eeEEEEEceecccccccchhhhhCCCCEEEEEEEEE
Q 026737 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (234)
Q Consensus 81 g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~i 116 (234)
+-+-|+|+|.+...-. ..+..||.|+..+..-
T Consensus 24 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 24 GEDLFAHFSAINMEGF----KTLKEGQRVSFDVTTG 55 (67)
T ss_dssp CCCEEEEGGGBCGGGG----SSCCTTCEEEEEEEEE
T ss_pred CccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 5799999999864422 3478999999988654
No 107
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=31.83 E-value=1.4e+02 Score=22.50 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=28.7
Q ss_pred eeEEEEEceecccccccchhhhhCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026737 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (234)
Q Consensus 81 g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS~K 128 (234)
+.+-|||+|.|....+ ..+..||.|+..+..-+ ++.-...+.
T Consensus 39 g~DvFvH~s~i~~~g~----~~l~eG~~V~f~~~~g~--kG~~A~~V~ 80 (148)
T 3ts2_A 39 PVDVFVHQSKLHMEGF----RSLKEGEAVEFTFKKSA--KGLESIRVT 80 (148)
T ss_dssp EEEEEEEGGGBCSSSS----CCCCTTCEEEEEEEEET--TEEEEEEEE
T ss_pred CccEEEEhHHhcccCC----ccCCCCCEEEEEEEEcc--ccchhhccc
Confidence 5799999999865432 23678999999987653 443333333
No 108
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=31.38 E-value=72 Score=22.25 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=24.3
Q ss_pred eeEEEEEceecccccccchhhhhCCCCEEEEEEEEE
Q 026737 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (234)
Q Consensus 81 g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~i 116 (234)
+-+-|||+|.|...-+ ..+..||.|+..+..-
T Consensus 38 g~DvFVH~s~i~~~g~----~~L~eG~~V~f~v~~g 69 (90)
T 3ulj_A 38 PVDVFVHQSKLYMEGF----RSLKEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEEGGGBCCSSS----CCCCTTCEEEEEEEEE
T ss_pred CccEEEEeehhcccCC----CccCCCCEEEEEEEEC
Confidence 5789999999865432 2367899999988654
No 109
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=30.78 E-value=50 Score=26.92 Aligned_cols=97 Identities=13% Similarity=0.204 Sum_probs=56.7
Q ss_pred CCCEEEEEEEEEeCCCCEEEEEechhhHhhhhcCCCCCcEEEEE----EeeEEEEEecCCCcceeEEEEEceeccccccc
Q 026737 22 TGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 97 (234)
Q Consensus 22 vG~~v~~~Vi~id~~~~~i~lS~k~~~~~~~~~~~~~G~iv~g~----~~G~fV~l~~~~g~~g~~glv~isels~~~~~ 97 (234)
.+....|-|++...+.|.+.|..-- ++.+ .+++|+.++-. +.|-||.|. |.-.+|+.+++.-.---.
T Consensus 76 ~~~~th~GVlEF~A~EG~v~lP~wm--m~~L--~l~~gd~V~i~~~~LPkgt~vklq-----P~~~~Fldi~npKavLE~ 146 (208)
T 1zc1_A 76 TGRVTHGGVLEFIAEEGRVYLPQWM--METL--GIQPGSLLQISSTDVPLGQFVKLE-----PQSVDFLDISDPKAVLEN 146 (208)
T ss_dssp TCCEEEEEEEEECCSSCEEEECHHH--HHHH--TCCTTCEEEEEEEECCCCSEEEEE-----CCHHHHHTSSCHHHHHHH
T ss_pred CCCEEEEEEEEEEcCCCeEEcCHHH--HHhc--CCCCCCEEEEEEeEcCCCCEEEEe-----ECccccccccCHHHHHHH
Confidence 5678889999999989988887532 2222 47889988766 889999997 233444433321100001
Q ss_pred chh--hhhCCCCEEEEEEEEEeCCCCeEEEEEeeccc
Q 026737 98 DIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132 (234)
Q Consensus 98 ~~~--~~~~vGd~v~vkVl~id~~~~ri~LS~K~~~~ 132 (234)
.++ ..++.||.+.+.- .+....|.+-++.+
T Consensus 147 ~LRnfstLT~Gd~I~i~~-----~~~~y~l~V~e~kP 178 (208)
T 1zc1_A 147 VLRNFSTLTVDDVIEISY-----NGKTFKIKILEVKP 178 (208)
T ss_dssp HHHHCSCEESSSEEEEEE-----TTEEEEEEEEEEEC
T ss_pred HhhcCccccCCCEEEEEe-----CCEEEEEEEEEEcC
Confidence 111 1257898887642 23444454444444
No 110
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=28.51 E-value=46 Score=23.52 Aligned_cols=47 Identities=26% Similarity=0.250 Sum_probs=31.6
Q ss_pred CcEEEEE----EeeE-EEEEecCCCcceeEEEEEceecccccccchhhhhCCCCEEEEEEE
Q 026737 59 EDIFVGR----DYGA-FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (234)
Q Consensus 59 G~iv~g~----~~G~-fV~l~~~~g~~g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl 114 (234)
.....|+ +.|. |+.-. +| +-+-|+|++.+... ...+..||.|...+.
T Consensus 16 ~~~~~G~Vkwf~KGfGFI~~d--dg--~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAMKEAFGFIERG--DV--VKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCCCSSEEEEECS--SS--CCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEEeCCceEEecC--CC--CceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 4556676 2233 55543 22 47999999998754 144789999999884
No 111
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=27.19 E-value=31 Score=23.65 Aligned_cols=58 Identities=21% Similarity=0.168 Sum_probs=35.6
Q ss_pred CcEEEEEEee-EEEEEecCCCcceeEEEEEceecccc-cccchhhhhCCCCEEEEEEEEEeCCCCeEEEE
Q 026737 59 EDIFVGRDYG-AFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (234)
Q Consensus 59 G~iv~g~~~G-~fV~l~~~~g~~g~~glv~isels~~-~~~~~~~~~~vGd~v~vkVl~id~~~~ri~LS 126 (234)
|.++++...| .+|.+. | |..-++|++=--.. ++ .+-+||.|.+.+-..|..+++|...
T Consensus 18 G~Vik~l~n~~f~V~l~--n---G~~~~c~i~GK~Rk~~I-----~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 18 GRVVEPLPNAMFRIELE--N---GHKVLAHISGKMRQHYI-----RILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp EEEEEEETTTEEEEEET--T---SCEEEEEECHHHHHTTC-----CCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEeC--C---CCEEEEEeCcceecCCc-----cCCCCCEEEEEECccCCCcEEEEEE
Confidence 5566655334 467775 2 55667777622211 11 1568999999887777667777654
No 112
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=24.69 E-value=1.1e+02 Score=19.05 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=13.0
Q ss_pred EEEEEEEeCCCCeEEEEEe
Q 026737 110 RVKVIKIDREKSRITLSIK 128 (234)
Q Consensus 110 ~vkVl~id~~~~ri~LS~K 128 (234)
.++|.++|.+++++.+.+.
T Consensus 22 ~g~v~~v~~~k~~v~V~v~ 40 (58)
T 1nz9_A 22 TGTVTEINPERGKVKVMVT 40 (58)
T ss_dssp EEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEcCCCCEEEEEEE
Confidence 3567788877777766554
No 113
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=22.44 E-value=27 Score=23.07 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=23.0
Q ss_pred eeEEEEEceecccccccchhhhhCCCCEEEEEEEE
Q 026737 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115 (234)
Q Consensus 81 g~~glv~isels~~~~~~~~~~~~vGd~v~vkVl~ 115 (234)
+-+-|+|+|.+...-. ..+..||.|+..+..
T Consensus 27 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 27 GKDVFVHKSAVDAAGL----HSLEEGQDVIFDLEE 57 (70)
Confidence 5799999999875422 346789999987744
Done!