BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026738
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 225
+VYV+NLP + E E+ + F KFG +SS VV+R + C+ FV FE +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISS-AVVMRDQSGNSRCFGFVNFECTEAAASA 285
Query: 226 VE 227
VE
Sbjct: 286 VE 287
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 148 EKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV 207
++ A TG E +VE+ S+YV +L PSVSE+ + + F G +SS V +
Sbjct: 20 DQKQAATGSESQSVENSS--ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 208 GICYAFVEFEDMTGVRNAVE----------VCILMW 233
+ YA+V F D R A+E +C +MW
Sbjct: 78 SLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW 113
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 169 SVYVRNLPPSVSESEIAEEFKKFGE-LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 227
+++++NL P + + + F FG+ LSS+ + K G + FV FE+ + A++
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKG--FGFVHFEEEGAAKEAID 184
Query: 228 VCILMW 233
M
Sbjct: 185 ALNGML 190
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 135 PTTQQETVSSYAYEKSWADT--GEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFG 192
P T++ET + A + A T EE + ED+ + S+YV L PSV+E+ + E F G
Sbjct: 11 PATKEETTTEAAPAEGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIG 70
Query: 193 ELSSEGVVIRSRKDVGICYAFVEFEDMT-GVRNAVEV---------CILMW 233
++S V + + YA+V F + G+R E+ C +MW
Sbjct: 71 PVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMW 121
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 162 EDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFED 218
E + +V+++NL ++E+E E KFGE SS V S D G + FV++++
Sbjct: 221 EQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSS---VHLSTNDEGKPTGFGFVDYKE 276
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana
GN=RSZ22A PE=1 SV=1
Length = 196
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+ VYV NL P V+E E+ +EF+ FG + S V +R+ G YAF++FED R+A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWV---ARRPPG--YAFLDFEDSRDARDAI 55
Query: 227 E 227
Sbjct: 56 R 56
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana
GN=RSZ22 PE=1 SV=1
Length = 200
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+ VYV NL P V+E E+ +EF+ FG + S V +R+ G YAF++FED R+A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWV---ARRPPG--YAFLDFEDPRDARDAI 55
Query: 227 EV 228
Sbjct: 56 RA 57
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 169 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE- 227
S+YV +L PSVSE+ + + F G +SS V + + YA+V F D + A+E
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 228 ---------VCILMW 233
+C +MW
Sbjct: 96 LNFTPIKGKLCRIMW 110
>sp|Q2L4W6|SPO5_SCHPO Sporulation-specific protein 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spo5 PE=1 SV=1
Length = 567
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 159 SAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFED 218
S +E ++VY+R LPP+ S+ + +FG++SS +I ++ Y F FE+
Sbjct: 287 SNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
Query: 219 MTGVRNAVEVCI 230
+ +CI
Sbjct: 347 ----EKSALICI 354
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 225
E + VYV NLP V E E+ + F K+G + V I+S + G +AFVEFED +A
Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKY--VDIKSGR--GPAFAFVEFEDHRDAEDA 62
Query: 226 V 226
V
Sbjct: 63 V 63
>sp|O13674|MUG24_SCHPO Meiotically up-regulated gene 24 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug24 PE=1 SV=1
Length = 654
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 9/61 (14%)
Query: 168 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 227
++V++ NLP S E EI E F KFG++ E + I S+K++ AFV F +R+A++
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKI--EHIKILSKKNI----AFVHF---LNIRDAIK 349
Query: 228 V 228
V
Sbjct: 350 V 350
>sp|O81127|RZP21_ARATH Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana
GN=RSZ21 PE=1 SV=1
Length = 187
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+ VYV NL P V+E E+ +EFK FG L + V +R+ G YAF+EF+D +A+
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWV---ARRPPG--YAFLEFDDERDALDAI 55
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 129 WNHVPQPTTQQETVSSYAYEKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEF 188
+N P P+T+Q + +WA G + E +++V +L P V++ +++ F
Sbjct: 121 YNGAPMPSTEQ------TFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTF 174
Query: 189 KK-FGELSSEGVVIRSRKDVGICYAFVEFED 218
K +G + VV+ Y FV F D
Sbjct: 175 KNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
>sp|O94359|YHOC_SCHPO Uncharacterized RNA-binding protein C428.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC428.12c PE=4 SV=2
Length = 116
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVR 223
E +V+V NL PSV+ES + F FGE+ S + R K V YAFVEF++ +
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALH-RKEKAVDRSYAFVEFDEPEDAK 60
Query: 224 NAVE 227
A+E
Sbjct: 61 EAME 64
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 225
E + ++V NLP +V E +I E FK++G + S ++ + + G+ AFV+F D+ + A
Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVA-AFVDFVDIKSAQKA 62
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 225
E + ++V NLP +V E +I E FK++G + S ++ + + G+ AFV+F D+ + A
Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVA-AFVDFVDIKSAQKA 62
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 152 ADTGEEISAVEDEEEIKS--VYVRNLPPSVSESEIAE----EFKKFGELSSEGVVIRSRK 205
A T + +S++E +E KS + V+NLP +++ + + EFKKFG+++S + S +
Sbjct: 317 APTSQLLSSLEKDEPRKSFGIKVQNLPVRSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEE 376
Query: 206 DVGICYAFVEFED 218
G+ + F + ED
Sbjct: 377 RYGLVF-FRQQED 388
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 161 VEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGIC--YAFVEFED 218
V+ EE+ ++Y++NL VSE + E+F +FG++ S + ++ + +C YAFV F++
Sbjct: 194 VKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI---AKDENRLCRGYAFVNFDN 250
Query: 219 MTGVRNAVEV 228
R A E
Sbjct: 251 PEDARRAAET 260
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV-VIRSRKDVGICYAFVEFEDMTGVRNA 225
+ +V+V+NLP SV+ + + + FKKFG + S V + K G Y FV+FE A
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRG--YGFVQFEQEDAAHAA 168
Query: 226 VEV 228
++
Sbjct: 169 IQT 171
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 169 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEF 216
S+YV +L PSV+E + + F +F L+S + + +CY + F
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANF 72
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus
GN=TUT1 PE=2 SV=1
Length = 871
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 157 EISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEF 216
E+ A + ++SV+V P V ++++E F+ FG ++S VV+ KD G+ +A VE
Sbjct: 45 ELRATRKAQGLRSVFVSGFPRDVDSTQLSEYFQAFGPVAS--VVM--DKDKGV-FAIVEM 99
Query: 217 EDMTGVRNAV 226
D+ G R AV
Sbjct: 100 GDL-GAREAV 108
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 225
E ++YV+NLP V E + + F +FG++ S V+R C+ FV FE + A
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVK-VMRDNSGHSRCFGFVNFEKHEEAQKA 247
Query: 226 V 226
V
Sbjct: 248 V 248
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVV--IRSRKDVGICYAFVEFE 217
+ S+YV +L P V+E+ + E+F G + S V + +R+ +G YA++ F+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLG--YAYINFQ 60
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 14/185 (7%)
Query: 55 SENILEDS--PAEELNGSLQNAVNAAQDYLPASVEEPVGEPQKHTYASILRVAKGQSTPS 112
S N+ +D P N SL N A++YL + + RV S S
Sbjct: 309 STNLRQDGVPPILRFN-SLSINTNVARNYLSSEKGYSAHTQNSSAQSPHPRVFSANSAFS 367
Query: 113 VTPQPSVSKNIS---PVSDWNHVPQPTTQQETVSSYAYEKSWADTGEEISAVEDEEEIKS 169
T P ++ + S P S P + S +++ A T + + +
Sbjct: 368 TTSPPPLTPSTSRDYPFSASTISPSTPFSAYSSSHGIHQRIPASTPTNTNPADQNPPCNT 427
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFED----MTGVRNA 225
+YV NLPPS SE E+ F ++ + + R++ + +C FVEFE+ M ++N
Sbjct: 428 IYVGNLPPSTSEEELKVLFST--QVGYKRLCFRTKGNGPMC--FVEFENIPYAMEALKNL 483
Query: 226 VEVCI 230
VC+
Sbjct: 484 QGVCL 488
>sp|Q7SXN4|CPEB4_DANRE Cytoplasmic polyadenylation element-binding protein 4 OS=Danio
rerio GN=cpeb4 PE=2 SV=1
Length = 635
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTG 221
E + V+V LPP + E EI F++FG L + K YAF+ F+D +
Sbjct: 374 ERYSRKVFVGGLPPDIDEDEITASFRRFGHLFVDWPHKAESKSYFPPKGYAFLLFQDESS 433
Query: 222 VRNAVEVCI 230
V+ ++ C+
Sbjct: 434 VQALIDACM 442
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+ VYV NL P V+ EI +EF+ FG L S V +RK G +AF++F+D +A+
Sbjct: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWV---ARKPPG--FAFIDFDDRRDAEDAI 55
Query: 227 E 227
Sbjct: 56 R 56
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 169 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEF 216
+VYV+NLP +++ E+ + F K+G++SS VV++ + + FV F
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISS-AVVMKDQSGNSRSFGFVNF 286
>sp|Q7TN98|CPEB4_MOUSE Cytoplasmic polyadenylation element-binding protein 4 OS=Mus
musculus GN=Cpeb4 PE=2 SV=1
Length = 729
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTG 221
E + V+V LPP + E EI F++FG L + K YAF+ F+D +
Sbjct: 468 ERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESS 527
Query: 222 VRNAVEVCI 230
V+ ++ CI
Sbjct: 528 VQALIDACI 536
>sp|Q17RY0|CPEB4_HUMAN Cytoplasmic polyadenylation element-binding protein 4 OS=Homo
sapiens GN=CPEB4 PE=1 SV=1
Length = 729
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTG 221
E + V+V LPP + E EI F++FG L + K YAF+ F+D +
Sbjct: 468 ERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESS 527
Query: 222 VRNAVEVCI 230
V+ ++ CI
Sbjct: 528 VQALIDACI 536
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 148 EKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV 207
E++ G + D + ++V +P + E+E+ E FKKFG ++ ++ + K
Sbjct: 93 ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 152
Query: 208 GICYAFVEFEDMTGVRNAVEV 228
+ F+ FED V AV +
Sbjct: 153 PRGFGFITFEDEQSVDQAVNM 173
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 148 EKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV 207
E++ G + D + ++V +P + E+E+ E FKKFG ++ ++ + K
Sbjct: 93 ERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 152
Query: 208 GICYAFVEFEDMTGVRNAVEV 228
+ F+ FED V AV +
Sbjct: 153 PRGFGFITFEDEQSVDQAVNM 173
>sp|Q6PHZ5|RB15B_MOUSE Putative RNA-binding protein 15B OS=Mus musculus GN=Rbm15b PE=1
SV=2
Length = 887
Score = 38.9 bits (89), Expect = 0.029, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 156 EEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVE 215
E++ +D+ +++++ NL SVSE E+ F+K+G + E V+ R + G YAF++
Sbjct: 321 EDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLK 379
Query: 216 FEDM 219
F+++
Sbjct: 380 FQNL 383
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1
SV=3
Length = 890
Score = 38.9 bits (89), Expect = 0.029, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 156 EEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVE 215
E++ +D+ +++++ NL SVSE E+ F+K+G + E V+ R + G YAF++
Sbjct: 325 EDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLK 383
Query: 216 FEDM 219
F+++
Sbjct: 384 FQNL 387
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 149 KSWADTG--EEISAVEDEE-----EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVI 201
K W + G E +ED + ++K ++VRNL +V+E + + F +FG+L +
Sbjct: 222 KVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLER----V 277
Query: 202 RSRKDVGICYAFVEFEDMTGVRNAVE 227
+ KD YAF+ F++ G A+E
Sbjct: 278 KKLKD----YAFIHFDERDGAVKAME 299
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 149 KSWADTG--EEISAVEDEE-----EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVI 201
K W + G E +ED + ++K ++VRNL +V+E + + F +FG+L +
Sbjct: 312 KVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLER----V 367
Query: 202 RSRKDVGICYAFVEFEDMTGVRNAVE 227
+ KD YAF+ F++ G A+E
Sbjct: 368 KKLKD----YAFIHFDERDGAVKAME 389
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 151 WADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGIC 210
WAD EE E ++K ++VRNL +V+E + + F +FG+L ++ KD
Sbjct: 325 WADPVEEPDP-EVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLER----VKKLKD---- 375
Query: 211 YAFVEFEDMTGVRNAVE 227
YAFV FED A++
Sbjct: 376 YAFVHFEDRGAAVKAMD 392
>sp|Q9BYG3|MK67I_HUMAN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo
sapiens GN=MKI67IP PE=1 SV=1
Length = 293
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 147 YEKSWADTGEEISAVEDEEEIKS--VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR 204
++K A + I+ + +E++ VYVR+LP + E++I F +FG ++ + R
Sbjct: 22 FQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKR 81
Query: 205 KDVGICYAFVEFE 217
YAFVEFE
Sbjct: 82 TGNSKGYAFVEFE 94
>sp|Q28CH2|CPEB3_XENTR Cytoplasmic polyadenylation element-binding protein 3 OS=Xenopus
tropicalis GN=cpeb3 PE=2 SV=1
Length = 632
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 140 ETVSSYAYEKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV 199
+++SS + GE I E + V+V LPP + E EI F++FG L +
Sbjct: 352 QSLSSGLSSPTHCQNGERI-----ERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWP 406
Query: 200 VIRSRKDV--GICYAFVEFEDMTGVRNAVEVCI 230
K YAF+ F++ + V+ ++ C+
Sbjct: 407 HKAESKSYFPPKGYAFLLFQEESSVQALIDACL 439
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 149 KSWADTG--EEISAVEDEE-----EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVI 201
K W + G E +ED + ++K ++VRNL +V+E + + F +FG+L +
Sbjct: 312 KVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLER----V 367
Query: 202 RSRKDVGICYAFVEFEDMTGVRNAVE 227
+ KD YAF+ F++ G A+E
Sbjct: 368 KKLKD----YAFIHFDERDGAVKAME 389
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 162 EDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTG 221
E +VY +N+ P V++ E + F KFG+++S V+ R + FV FED
Sbjct: 221 ETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITS-CVLQRDEDGKSKGFGFVNFEDHNE 279
Query: 222 VRNAVE 227
+ AV+
Sbjct: 280 AQKAVD 285
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 146 AYEKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK 205
A E+ GE+ + D S+YV L PSV+E+ + E F G ++S V +
Sbjct: 26 AAEQPAVGNGEQRNNA-DAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVT 84
Query: 206 DVGICYAFVEFEDMTGVRNAVEV----------CILMW 233
+ YA+V F + A+E C +MW
Sbjct: 85 RRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMW 122
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+ VYV NL P V+ E+ +EF+ FG L S V +RK G +AF++F+D ++A+
Sbjct: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWV---ARKPPG--FAFIDFDDRRDAQDAI 55
Query: 227 E 227
Sbjct: 56 R 56
>sp|Q1RMU5|RBM5_BOVIN RNA-binding protein 5 OS=Bos taurus GN=RBM5 PE=2 SV=1
Length = 815
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 161 VEDEEEIKSVYVRNLPPSVSESEIAEEFKKF-GELSSEGVVIRSRKDVGICYAFVEF 216
+ DE E K++ +R LP +++ES+I E + F G ++ +++ + V +AFVEF
Sbjct: 91 ISDERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFVEF 147
>sp|B2GV05|RBM5_RAT RNA-binding protein 5 OS=Rattus norvegicus GN=Rbm5 PE=2 SV=1
Length = 815
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 161 VEDEEEIKSVYVRNLPPSVSESEIAEEFKKF-GELSSEGVVIRSRKDVGICYAFVEF 216
+ DE E K++ +R LP +++ES+I E + F G ++ +++ + V +AFVEF
Sbjct: 91 ISDERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFVEF 147
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 169 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 228
++Y++NL P++ + E F FG + S V V + FV FE+ + R+A+E
Sbjct: 127 NIYIKNLHPAIDNKSLHETFSTFGNILSCKVAT-DENGVSRGFGFVHFENESDARDAIEA 185
Query: 229 CILMW 233
M
Sbjct: 186 VDGML 190
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 169 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 228
S+YV L P+VSE+ + + F G +SS V + + + YA+V F D A+E
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 229 ----------CILMW 233
C +MW
Sbjct: 99 LNYTLIKGKPCRIMW 113
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 165 EEIKS----VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMT 220
EE+K+ VYV+N+ S+ E E F K+G+++S V+ + + + FV FED
Sbjct: 212 EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITS-AVLEKDSEGKLRGFGFVNFEDHA 270
Query: 221 GVRNAVE 227
AV+
Sbjct: 271 AAAKAVD 277
>sp|Q91YE7|RBM5_MOUSE RNA-binding protein 5 OS=Mus musculus GN=Rbm5 PE=1 SV=1
Length = 815
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 161 VEDEEEIKSVYVRNLPPSVSESEIAEEFKKF-GELSSEGVVIRSRKDVGICYAFVEF 216
+ DE E K++ +R LP +++ES+I E + F G ++ +++ + V +AFVEF
Sbjct: 91 ISDERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFVEF 147
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 OS=Homo sapiens GN=RBM5 PE=1 SV=2
Length = 815
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 161 VEDEEEIKSVYVRNLPPSVSESEIAEEFKKF-GELSSEGVVIRSRKDVGICYAFVEF 216
+ DE E K++ +R LP +++ES+I E + F G ++ +++ + V +AFVEF
Sbjct: 91 ISDERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFVEF 147
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+YV NLPP + ++ + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 70
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 151 WADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGIC 210
WAD +E+ E + +K +YVRNL S +E I EF KF G V R +K
Sbjct: 220 WADPEKEVDE-ETMQRVKVLYVRNLMISTTEETIKAEFNKF----KPGAVERVKKLRD-- 272
Query: 211 YAFVEF 216
YAFV F
Sbjct: 273 YAFVHF 278
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 170 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 226
+YV NLPP + ++ + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,936,922
Number of Sequences: 539616
Number of extensions: 4025618
Number of successful extensions: 11854
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 257
Number of HSP's that attempted gapping in prelim test: 11388
Number of HSP's gapped (non-prelim): 689
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)