Query 026738
Match_columns 234
No_of_seqs 327 out of 1415
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 20:55:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.7 1.8E-16 6.2E-21 118.3 8.8 67 165-233 17-86 (99)
2 4f25_A Polyadenylate-binding p 99.6 3.1E-16 1E-20 119.7 7.8 65 167-233 5-70 (115)
3 3s7r_A Heterogeneous nuclear r 99.6 9.1E-16 3.1E-20 110.7 8.6 68 164-233 8-77 (87)
4 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.9E-15 1E-19 111.4 10.1 69 163-233 11-80 (103)
5 1x4b_A Heterogeneous nuclear r 99.6 1.9E-15 6.5E-20 114.9 8.4 68 164-233 24-93 (116)
6 1s79_A Lupus LA protein; RRM, 99.6 2.3E-15 8E-20 113.2 8.5 68 165-234 9-77 (103)
7 2dh8_A DAZ-associated protein 99.6 2.9E-15 9.9E-20 111.8 8.8 69 163-233 12-82 (105)
8 2cq3_A RNA-binding protein 9; 99.6 5.1E-15 1.7E-19 110.1 10.1 69 163-233 11-80 (103)
9 2dgo_A Cytotoxic granule-assoc 99.6 6.9E-15 2.4E-19 111.5 11.0 69 163-233 11-82 (115)
10 2lxi_A RNA-binding protein 10; 99.6 6.6E-16 2.3E-20 113.3 4.9 61 167-229 1-64 (91)
11 2dgs_A DAZ-associated protein 99.6 5.5E-15 1.9E-19 109.1 9.8 68 165-234 8-77 (99)
12 3s8s_A Histone-lysine N-methyl 99.6 3.8E-15 1.3E-19 113.3 9.0 66 166-233 5-73 (110)
13 2rs2_A Musashi-1, RNA-binding 99.6 2.7E-15 9.1E-20 113.5 7.5 68 164-233 22-91 (109)
14 2khc_A Testis-specific RNP-typ 99.6 8.3E-15 2.8E-19 111.5 10.2 68 164-233 37-107 (118)
15 2cqc_A Arginine/serine-rich sp 99.6 7.1E-15 2.4E-19 107.3 9.1 68 164-233 12-82 (95)
16 2cq0_A Eukaryotic translation 99.6 7.3E-15 2.5E-19 109.2 9.2 69 163-233 11-82 (103)
17 2cqg_A TDP-43, TAR DNA-binding 99.6 9.5E-15 3.3E-19 108.6 9.8 63 164-228 12-76 (103)
18 2krb_A Eukaryotic translation 99.6 4.1E-15 1.4E-19 106.2 7.4 65 167-233 1-72 (81)
19 2cq4_A RNA binding motif prote 99.6 5E-15 1.7E-19 112.2 8.3 68 165-234 23-92 (114)
20 3p5t_L Cleavage and polyadenyl 99.6 3.7E-15 1.3E-19 108.6 7.2 64 168-233 2-70 (90)
21 1x5u_A Splicing factor 3B subu 99.6 9.4E-15 3.2E-19 108.9 9.5 67 165-233 13-82 (105)
22 2cph_A RNA binding motif prote 99.6 8.5E-15 2.9E-19 109.3 9.1 68 164-233 12-84 (107)
23 1p27_B RNA-binding protein 8A; 99.6 1.6E-14 5.4E-19 107.8 10.3 68 165-234 21-91 (106)
24 1u6f_A Tcubp1, RNA-binding pro 99.6 4.1E-14 1.4E-18 110.6 13.2 67 165-233 40-109 (139)
25 2d9p_A Polyadenylate-binding p 99.6 7.6E-15 2.6E-19 109.2 8.5 69 163-233 11-80 (103)
26 3n9u_C Cleavage and polyadenyl 99.6 8.2E-15 2.8E-19 118.1 9.3 67 166-234 54-125 (156)
27 2cqd_A RNA-binding region cont 99.6 1.1E-14 3.7E-19 110.7 9.4 69 163-233 13-83 (116)
28 1wg5_A Heterogeneous nuclear r 99.6 8.7E-15 3E-19 109.6 8.8 68 165-234 13-82 (104)
29 3md1_A Nuclear and cytoplasmic 99.6 1.2E-14 4E-19 103.6 9.0 65 167-233 1-68 (83)
30 2dng_A Eukaryotic translation 99.6 1.2E-14 4.2E-19 108.1 9.5 66 165-233 13-80 (103)
31 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.2E-14 4.2E-19 104.4 9.2 66 166-233 5-73 (87)
32 2err_A Ataxin-2-binding protei 99.6 5.4E-15 1.8E-19 111.7 7.5 67 165-233 27-94 (109)
33 1x4h_A RNA-binding protein 28; 99.6 9.4E-15 3.2E-19 109.8 8.8 63 165-229 13-77 (111)
34 2cpz_A CUG triplet repeat RNA- 99.6 1.5E-14 5.1E-19 109.8 9.9 67 165-233 23-92 (115)
35 3ns6_A Eukaryotic translation 99.6 4.3E-15 1.5E-19 110.6 6.5 66 166-233 5-79 (100)
36 2la6_A RNA-binding protein FUS 99.6 1.7E-14 5.7E-19 106.6 9.6 67 166-234 12-89 (99)
37 2dgv_A HnRNP M, heterogeneous 99.6 1.5E-14 5E-19 105.2 9.1 66 166-233 7-73 (92)
38 1whw_A Hypothetical protein ri 99.6 1.4E-14 4.9E-19 106.8 9.2 67 165-233 6-75 (99)
39 2cpy_A RNA-binding protein 12; 99.6 6.1E-15 2.1E-19 112.2 7.2 68 165-234 13-82 (114)
40 2do4_A Squamous cell carcinoma 99.6 1.9E-14 6.3E-19 106.5 9.6 67 165-233 15-83 (100)
41 2jrs_A RNA-binding protein 39; 99.5 2.6E-14 8.9E-19 108.0 10.3 67 165-233 24-93 (108)
42 2dgx_A KIAA0430 protein; RRM d 99.5 1.3E-14 4.3E-19 107.1 8.3 65 166-233 8-77 (96)
43 2lkz_A RNA-binding protein 5; 99.5 5.3E-15 1.8E-19 109.8 6.3 65 165-229 7-73 (95)
44 2mss_A Protein (musashi1); RNA 99.5 5.9E-15 2E-19 103.5 6.2 64 169-234 1-66 (75)
45 2e5h_A Zinc finger CCHC-type a 99.5 1.3E-14 4.6E-19 105.8 8.3 67 165-233 14-83 (94)
46 2dnh_A Bruno-like 5, RNA bindi 99.5 3.1E-14 1.1E-18 106.0 10.4 67 165-233 13-81 (105)
47 3ucg_A Polyadenylate-binding p 99.5 9E-15 3.1E-19 105.5 7.1 66 166-233 5-72 (89)
48 2dgp_A Bruno-like 4, RNA bindi 99.5 1.9E-14 6.4E-19 107.4 9.1 66 165-232 11-79 (106)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.4E-14 4.7E-19 103.7 8.0 66 166-233 6-74 (85)
50 1iqt_A AUF1, heterogeneous nuc 99.5 4.3E-15 1.5E-19 104.0 5.2 64 169-234 1-66 (75)
51 2cq1_A PTB-like protein L; RRM 99.5 1.8E-14 6.2E-19 108.2 8.9 58 165-228 13-70 (101)
52 1x5s_A Cold-inducible RNA-bind 99.5 1.9E-14 6.4E-19 106.7 8.9 67 165-233 10-79 (102)
53 1x4e_A RNA binding motif, sing 99.5 8.3E-15 2.8E-19 105.1 6.7 66 166-233 4-72 (85)
54 2dnz_A Probable RNA-binding pr 99.5 2.3E-14 8E-19 104.7 9.3 66 166-233 4-72 (95)
55 2cqp_A RNA-binding protein 12; 99.5 1.3E-14 4.5E-19 106.8 7.9 67 165-233 13-82 (98)
56 1uaw_A Mouse-musashi-1; RNP-ty 99.5 7E-15 2.4E-19 103.3 5.9 64 168-233 1-66 (77)
57 1sjq_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 109.5 8.2 59 165-229 14-72 (105)
58 2x1f_A MRNA 3'-END-processing 99.5 1.5E-14 5.2E-19 106.3 7.9 65 167-233 2-69 (96)
59 1wex_A Hypothetical protein (r 99.5 4.4E-14 1.5E-18 106.5 10.2 59 165-229 13-71 (104)
60 1wi8_A EIF-4B, eukaryotic tran 99.5 2.2E-14 7.5E-19 106.9 8.5 66 165-233 13-81 (104)
61 2db1_A Heterogeneous nuclear r 99.5 1.9E-14 6.7E-19 110.3 8.3 68 165-234 15-86 (118)
62 1p1t_A Cleavage stimulation fa 99.5 1.7E-14 5.9E-19 107.1 7.7 67 165-233 6-75 (104)
63 2kxn_B Transformer-2 protein h 99.5 1.8E-14 6.2E-19 112.4 8.2 67 165-233 44-113 (129)
64 2dnm_A SRP46 splicing factor; 99.5 2E-14 7E-19 106.8 8.1 67 165-233 11-80 (103)
65 2m2b_A RNA-binding protein 10; 99.5 1E-14 3.5E-19 113.6 6.7 66 165-231 21-89 (131)
66 1x5t_A Splicing factor 3B subu 99.5 1.9E-14 6.5E-19 105.4 7.8 66 166-233 4-73 (96)
67 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.1E-14 3.6E-19 108.0 6.5 67 165-233 10-79 (102)
68 1wez_A HnRNP H', FTP-3, hetero 99.5 1.7E-14 5.8E-19 108.1 7.6 67 165-234 13-80 (102)
69 1oo0_B CG8781-PA, drosophila Y 99.5 3.1E-14 1.1E-18 107.0 9.0 67 165-233 24-93 (110)
70 2cpf_A RNA binding motif prote 99.5 1.7E-14 5.9E-19 106.1 7.4 66 166-233 4-75 (98)
71 2dhg_A TRNA selenocysteine ass 99.5 4.5E-14 1.5E-18 105.0 9.7 65 165-232 7-75 (104)
72 2ywk_A Putative RNA-binding pr 99.5 4E-14 1.4E-18 103.4 9.1 67 165-233 14-82 (95)
73 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 4.3E-14 1.5E-18 110.1 9.8 67 165-233 61-130 (140)
74 2ek1_A RNA-binding protein 12; 99.5 1.6E-14 5.4E-19 105.6 6.5 66 166-233 14-82 (95)
75 2do0_A HnRNP M, heterogeneous 99.5 4.9E-14 1.7E-18 106.5 9.3 68 164-233 12-81 (114)
76 2jwn_A Embryonic polyadenylate 99.5 3.7E-14 1.3E-18 108.8 8.8 68 164-233 33-102 (124)
77 1wel_A RNA-binding protein 12; 99.5 2.2E-14 7.6E-19 110.5 7.4 68 165-234 23-92 (124)
78 2fy1_A RNA-binding motif prote 99.5 4.8E-14 1.7E-18 107.8 9.2 67 165-233 5-73 (116)
79 2nlw_A Eukaryotic translation 99.5 2.3E-14 7.8E-19 107.4 7.2 66 166-233 14-86 (105)
80 2lmi_A GRSF-1, G-rich sequence 99.5 1.8E-14 6.1E-19 108.4 6.6 68 165-234 9-80 (107)
81 2dnn_A RNA-binding protein 12; 99.5 3E-14 1E-18 108.4 7.8 67 165-234 14-81 (109)
82 2xs2_A Deleted in azoospermia- 99.5 1.6E-14 5.6E-19 107.1 6.1 65 165-233 7-73 (102)
83 2cpe_A RNA-binding protein EWS 99.5 4.6E-14 1.6E-18 106.6 8.7 70 164-233 12-90 (113)
84 2div_A TRNA selenocysteine ass 99.5 6.5E-14 2.2E-18 103.2 9.2 67 166-233 8-77 (99)
85 4a8x_A RNA-binding protein wit 99.5 2.9E-14 9.9E-19 102.5 7.1 66 166-233 3-72 (88)
86 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.6E-14 5.3E-19 107.3 5.8 66 166-234 18-86 (100)
87 1x4a_A Splicing factor, argini 99.5 9.1E-14 3.1E-18 104.4 9.9 66 165-233 20-86 (109)
88 3ulh_A THO complex subunit 4; 99.5 7.8E-14 2.7E-18 104.2 9.3 66 165-233 27-95 (107)
89 1x4d_A Matrin 3; structural ge 99.5 2.9E-14 9.9E-19 107.4 6.7 58 166-229 14-72 (102)
90 2ad9_A Polypyrimidine tract-bi 99.5 6.3E-14 2.1E-18 108.5 8.8 59 165-229 29-87 (119)
91 1x5o_A RNA binding motif, sing 99.5 1.4E-13 4.9E-18 104.0 10.5 66 165-233 23-91 (114)
92 2dha_A FLJ20171 protein; RRM d 99.5 4.2E-14 1.4E-18 109.9 7.6 68 165-234 21-93 (123)
93 3ex7_B RNA-binding protein 8A; 99.5 7.3E-14 2.5E-18 107.4 8.9 68 165-234 20-90 (126)
94 2ki2_A SS-DNA binding protein 99.5 2.5E-14 8.4E-19 103.7 5.8 63 168-233 2-67 (90)
95 2ytc_A PRE-mRNA-splicing facto 99.5 1.4E-13 4.6E-18 98.6 9.1 63 165-233 10-74 (85)
96 1l3k_A Heterogeneous nuclear r 99.5 1E-13 3.5E-18 112.9 9.5 67 165-233 11-79 (196)
97 2dis_A Unnamed protein product 99.5 8.9E-14 3E-18 104.2 8.4 62 166-229 7-72 (109)
98 3r27_A HnRNP L, heterogeneous 99.5 9.8E-14 3.3E-18 104.2 8.4 59 165-229 19-77 (100)
99 3q2s_C Cleavage and polyadenyl 99.5 6.7E-14 2.3E-18 119.4 8.4 66 166-233 67-137 (229)
100 2cpi_A CCR4-NOT transcription 99.5 4.9E-14 1.7E-18 106.7 6.6 67 165-233 13-88 (111)
101 2dgw_A Probable RNA-binding pr 99.5 1.3E-13 4.3E-18 100.2 8.5 67 165-234 8-75 (91)
102 1fj7_A Nucleolin RBD1, protein 99.5 2.5E-14 8.4E-19 106.0 4.8 65 166-233 16-82 (101)
103 2hgl_A HNRPF protein, heteroge 99.5 5.2E-14 1.8E-18 111.2 6.9 68 165-234 42-113 (136)
104 2kt5_A RNA and export factor-b 99.5 2.1E-13 7.2E-18 104.8 10.2 67 165-233 33-101 (124)
105 2cpj_A Non-POU domain-containi 99.5 1.1E-13 3.7E-18 102.2 8.0 63 165-233 13-76 (99)
106 2wbr_A GW182, gawky, LD47780P; 99.5 7.3E-14 2.5E-18 102.5 6.9 61 166-232 6-67 (89)
107 1x4c_A Splicing factor, argini 99.5 1.7E-13 5.9E-18 103.0 9.2 61 166-233 14-75 (108)
108 2kn4_A Immunoglobulin G-bindin 99.5 1.4E-13 4.8E-18 109.7 9.1 68 165-234 68-138 (158)
109 2hgm_A HNRPF protein, heteroge 99.5 7.4E-14 2.5E-18 109.0 7.3 69 165-234 40-109 (126)
110 2dnq_A RNA-binding protein 4B; 99.5 2.4E-13 8.3E-18 98.6 9.4 61 165-233 6-67 (90)
111 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.2E-13 7.4E-18 108.7 9.8 67 165-233 37-106 (156)
112 3lqv_A PRE-mRNA branch site pr 99.5 2.3E-13 7.9E-18 103.0 9.3 65 166-233 7-72 (115)
113 2la4_A Nuclear and cytoplasmic 99.5 1.7E-13 5.7E-18 101.4 8.2 62 166-233 26-88 (101)
114 2jvr_A Nucleolar protein 3; RN 99.5 9.3E-14 3.2E-18 106.1 7.0 64 166-233 27-92 (111)
115 1x4f_A Matrin 3; structural ge 99.5 2.1E-13 7.1E-18 104.4 8.8 59 165-229 23-82 (112)
116 1whx_A Hypothetical protein ri 99.5 1.6E-13 5.5E-18 104.0 8.0 62 166-233 9-71 (111)
117 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.4E-13 8.1E-18 109.8 9.5 66 166-233 71-139 (165)
118 1why_A Hypothetical protein ri 99.5 2.5E-13 8.6E-18 99.9 8.8 62 166-233 16-78 (97)
119 1x4g_A Nucleolysin TIAR; struc 99.5 1.8E-13 6.1E-18 102.9 8.1 64 164-233 22-86 (109)
120 2a3j_A U1 small nuclear ribonu 99.5 2.5E-13 8.5E-18 106.0 9.1 65 166-233 28-97 (127)
121 4f02_A Polyadenylate-binding p 99.5 1.8E-13 6.3E-18 114.4 8.9 62 166-229 14-77 (213)
122 3d2w_A TAR DNA-binding protein 99.4 1E-13 3.5E-18 101.2 6.4 56 165-225 9-64 (89)
123 2e5j_A Methenyltetrahydrofolat 99.4 3.2E-13 1.1E-17 99.4 9.1 65 165-234 17-82 (97)
124 2hvz_A Splicing factor, argini 99.4 1.4E-13 5E-18 101.8 7.0 61 168-233 1-62 (101)
125 2jvo_A Nucleolar protein 3; nu 99.4 1.9E-13 6.6E-18 103.2 7.7 62 164-233 28-90 (108)
126 2cpx_A Hypothetical protein FL 99.4 3.3E-13 1.1E-17 102.0 8.7 68 166-233 24-92 (115)
127 2e5g_A U6 snRNA-specific termi 99.4 3.3E-13 1.1E-17 98.8 8.5 64 166-234 7-70 (94)
128 2fc9_A NCL protein; structure 99.4 1.5E-13 5E-18 101.8 6.6 65 164-233 12-78 (101)
129 2lea_A Serine/arginine-rich sp 99.4 1.2E-13 4.2E-18 108.4 6.2 68 164-233 44-114 (135)
130 2dgt_A RNA-binding protein 30; 99.4 4E-13 1.4E-17 97.8 8.4 61 165-233 8-69 (92)
131 2kvi_A Nuclear polyadenylated 99.4 4.1E-13 1.4E-17 98.7 8.4 61 165-233 8-70 (96)
132 2dnl_A Cytoplasmic polyadenyla 99.4 1.5E-13 5.2E-18 104.4 6.1 61 166-229 7-72 (114)
133 2xnq_A Nuclear polyadenylated 99.4 4.2E-13 1.4E-17 99.3 8.1 60 166-233 21-82 (97)
134 3beg_B Splicing factor, argini 99.4 2.2E-13 7.4E-18 103.9 6.2 61 166-233 15-76 (115)
135 2i2y_A Fusion protein consists 99.4 5.2E-13 1.8E-17 105.8 8.6 65 165-234 71-136 (150)
136 1wf1_A RNA-binding protein RAL 99.4 8.3E-13 2.8E-17 99.4 9.1 60 166-233 26-87 (110)
137 2cpd_A Apobec-1 stimulating pr 99.4 1E-12 3.5E-17 96.9 9.5 61 165-233 13-76 (99)
138 2dnp_A RNA-binding protein 14; 99.4 4.3E-13 1.5E-17 97.3 7.2 61 165-233 7-68 (90)
139 1fjc_A Nucleolin RBD2, protein 99.4 2.3E-13 7.9E-18 99.7 5.8 64 165-233 14-78 (96)
140 2hgn_A Heterogeneous nuclear r 99.4 9.9E-14 3.4E-18 110.0 3.8 67 165-234 44-111 (139)
141 1nu4_A U1A RNA binding domain; 99.4 1.6E-13 5.5E-18 100.6 4.5 65 166-233 7-76 (97)
142 2dgu_A Heterogeneous nuclear r 99.4 4.8E-13 1.6E-17 99.5 7.2 60 166-233 10-70 (103)
143 2hzc_A Splicing factor U2AF 65 99.4 6.1E-13 2.1E-17 95.4 7.4 62 166-233 5-77 (87)
144 2cjk_A Nuclear polyadenylated 99.4 4.7E-13 1.6E-17 106.3 7.5 61 166-228 2-64 (167)
145 2e44_A Insulin-like growth fac 99.4 6.5E-13 2.2E-17 97.2 7.6 65 166-234 14-80 (96)
146 4f02_A Polyadenylate-binding p 99.4 4.9E-13 1.7E-17 111.8 7.6 67 166-234 102-169 (213)
147 2voo_A Lupus LA protein; RNA-b 99.4 7.4E-13 2.5E-17 110.0 8.3 67 165-233 107-174 (193)
148 3nmr_A Cugbp ELAV-like family 99.4 1.3E-12 4.3E-17 104.2 9.4 62 166-229 2-67 (175)
149 1l3k_A Heterogeneous nuclear r 99.4 1E-12 3.5E-17 106.9 9.0 67 166-234 103-171 (196)
150 2cqh_A IGF-II mRNA-binding pro 99.4 4.8E-13 1.6E-17 97.5 6.3 61 166-233 7-70 (93)
151 2cq2_A Hypothetical protein LO 99.4 4.2E-13 1.4E-17 103.0 6.2 62 166-233 24-88 (114)
152 1wf0_A TDP-43, TAR DNA-binding 99.4 1.6E-13 5.4E-18 99.2 3.6 57 166-227 4-60 (88)
153 2fc8_A NCL protein; structure 99.4 5.3E-13 1.8E-17 98.8 6.5 64 165-233 13-79 (102)
154 1fxl_A Paraneoplastic encephal 99.4 1.2E-12 4.1E-17 103.4 8.9 65 167-233 2-69 (167)
155 2lcw_A RNA-binding protein FUS 99.1 3.9E-14 1.3E-18 107.7 0.0 67 165-233 5-82 (116)
156 1x5p_A Negative elongation fac 99.4 2.4E-12 8.3E-17 94.7 9.5 61 165-233 13-74 (97)
157 1b7f_A Protein (SXL-lethal pro 99.4 9.6E-13 3.3E-17 104.4 7.8 66 166-233 2-70 (168)
158 1sjr_A Polypyrimidine tract-bi 99.4 1.8E-12 6.2E-17 105.5 9.5 64 166-233 45-109 (164)
159 2f3j_A RNA and export factor b 99.4 1.5E-12 5.3E-17 106.8 8.9 67 165-233 86-154 (177)
160 3egn_A RNA-binding protein 40; 99.4 5.7E-13 1.9E-17 104.8 5.9 67 166-233 44-117 (143)
161 2qfj_A FBP-interacting repress 99.4 1.7E-12 5.7E-17 107.2 8.8 69 164-234 25-96 (216)
162 2cjk_A Nuclear polyadenylated 99.3 1.1E-12 3.8E-17 104.1 6.8 67 166-234 86-154 (167)
163 3pgw_S U1-70K; protein-RNA com 99.3 1.9E-12 6.5E-17 120.2 9.2 67 166-234 101-170 (437)
164 3md3_A Nuclear and cytoplasmic 99.3 2E-12 6.7E-17 102.1 7.7 64 168-233 1-66 (166)
165 3md3_A Nuclear and cytoplasmic 99.3 4.7E-12 1.6E-16 99.8 9.9 66 166-233 86-154 (166)
166 2e5i_A Heterogeneous nuclear r 99.3 1.1E-11 3.7E-16 96.4 11.1 62 166-233 24-87 (124)
167 1wg1_A KIAA1579 protein, homol 99.3 1.3E-12 4.4E-17 94.6 5.3 61 166-233 4-65 (88)
168 3zzy_A Polypyrimidine tract-bi 99.3 3.7E-12 1.3E-16 99.9 8.1 63 166-233 27-91 (130)
169 2qfj_A FBP-interacting repress 99.3 5.2E-12 1.8E-16 104.2 9.3 68 165-234 123-193 (216)
170 3tyt_A Heterogeneous nuclear r 99.3 2.7E-12 9.3E-17 107.4 7.5 63 166-233 3-67 (205)
171 2j8a_A Histone-lysine N-methyl 99.3 2.2E-12 7.7E-17 101.0 6.2 58 168-227 3-74 (136)
172 1fxl_A Paraneoplastic encephal 99.3 9.9E-12 3.4E-16 98.0 10.1 66 166-233 87-155 (167)
173 3nmr_A Cugbp ELAV-like family 99.3 9.5E-12 3.2E-16 99.1 9.8 66 166-233 94-161 (175)
174 2g4b_A Splicing factor U2AF 65 99.3 3.7E-12 1.3E-16 101.5 7.2 66 167-234 94-162 (172)
175 2ghp_A U4/U6 snRNA-associated 99.3 4.1E-12 1.4E-16 110.3 7.7 69 163-233 37-105 (292)
176 3tyt_A Heterogeneous nuclear r 99.3 3.1E-12 1.1E-16 107.1 6.7 66 166-233 122-190 (205)
177 2yh0_A Splicing factor U2AF 65 99.3 1.5E-11 5E-16 100.2 9.7 67 165-233 112-181 (198)
178 1b7f_A Protein (SXL-lethal pro 99.3 1.4E-11 4.7E-16 97.6 9.3 66 166-233 88-156 (168)
179 3pgw_A U1-A; protein-RNA compl 99.3 4.2E-11 1.4E-15 103.4 12.9 65 164-233 204-269 (282)
180 2bz2_A Negative elongation fac 99.3 1.2E-11 4.2E-16 95.3 7.8 61 165-233 37-98 (121)
181 3pgw_A U1-A; protein-RNA compl 99.3 1.3E-11 4.4E-16 106.6 8.6 66 165-233 7-77 (282)
182 2adc_A Polypyrimidine tract-bi 99.2 2E-11 6.9E-16 103.0 9.1 64 165-233 32-97 (229)
183 1qm9_A Polypyrimidine tract-bi 99.2 1.4E-11 4.6E-16 101.0 6.3 63 166-233 2-66 (198)
184 1fje_B Nucleolin RBD12, protei 99.2 6.2E-12 2.1E-16 100.8 4.0 67 165-233 11-78 (175)
185 2yh0_A Splicing factor U2AF 65 99.2 6E-12 2.1E-16 102.5 3.5 62 166-233 3-75 (198)
186 2diu_A KIAA0430 protein; struc 99.2 4.3E-11 1.5E-15 88.7 7.7 57 167-233 9-71 (96)
187 3u1l_A PRE-mRNA-splicing facto 99.2 2.6E-11 8.9E-16 104.3 7.3 63 165-233 132-204 (240)
188 2g4b_A Splicing factor U2AF 65 99.2 4.8E-11 1.6E-15 95.0 7.6 62 166-233 3-75 (172)
189 1fje_B Nucleolin RBD12, protei 99.2 3E-11 1E-15 96.7 6.0 63 166-233 98-161 (175)
190 3sde_A Paraspeckle component 1 99.1 7.1E-11 2.4E-15 101.6 8.2 63 165-233 20-83 (261)
191 2pe8_A Splicing factor 45; RRM 99.1 1.3E-10 4.4E-15 87.5 8.4 66 166-233 7-81 (105)
192 3smz_A Protein raver-1, ribonu 99.1 1.5E-10 5.3E-15 99.9 9.5 66 166-233 94-162 (284)
193 3tht_A Alkylated DNA repair pr 99.1 6.7E-11 2.3E-15 106.7 6.8 61 165-231 16-79 (345)
194 2dit_A HIV TAT specific factor 99.1 2.8E-10 9.6E-15 86.0 9.0 65 165-233 13-89 (112)
195 2ghp_A U4/U6 snRNA-associated 99.1 8E-11 2.7E-15 102.1 6.4 68 165-234 208-279 (292)
196 3sde_A Paraspeckle component 1 99.1 1.9E-10 6.5E-15 98.9 8.6 62 166-229 95-157 (261)
197 1qm9_A Polypyrimidine tract-bi 99.1 1.9E-10 6.4E-15 94.1 7.5 64 166-234 119-184 (198)
198 2adc_A Polypyrimidine tract-bi 99.1 2.9E-10 1E-14 95.8 8.2 64 166-234 150-215 (229)
199 3smz_A Protein raver-1, ribonu 99.1 2.1E-10 7.3E-15 99.0 7.5 66 166-233 183-251 (284)
200 2d9o_A DNAJ (HSP40) homolog, s 99.0 3.6E-09 1.2E-13 79.0 10.1 58 167-229 10-74 (100)
201 3v4m_A Splicing factor U2AF 65 98.9 1.8E-09 6.3E-14 81.1 5.9 66 166-233 4-84 (105)
202 1jmt_A Splicing factor U2AF 35 98.9 6.9E-10 2.4E-14 83.2 2.7 60 172-233 20-93 (104)
203 1owx_A Lupus LA protein, SS-B, 98.8 7.9E-09 2.7E-13 79.9 7.5 65 163-233 14-83 (121)
204 3ue2_A Poly(U)-binding-splicin 98.8 6.7E-09 2.3E-13 79.8 5.9 66 166-233 19-96 (118)
205 3s6e_A RNA-binding protein 39; 98.6 5.9E-08 2E-12 74.1 5.0 63 167-233 7-80 (114)
206 2dnr_A Synaptojanin-1; RRM dom 98.0 7.1E-06 2.4E-10 60.1 5.4 60 167-234 7-74 (91)
207 3dxb_A Thioredoxin N-terminall 97.9 1.2E-05 4.1E-10 67.0 6.1 52 180-233 142-200 (222)
208 1ufw_A Synaptojanin 2; RNP dom 97.8 1.9E-05 6.4E-10 58.2 5.0 61 166-234 14-83 (95)
209 1whv_A Poly(A)-specific ribonu 97.3 0.00091 3.1E-08 49.4 7.5 53 167-228 16-68 (100)
210 2l9w_A U4/U6 snRNA-associated- 97.0 0.0019 6.7E-08 48.7 7.0 62 166-233 20-87 (117)
211 2dhx_A Poly (ADP-ribose) polym 96.9 0.0054 1.9E-07 45.6 8.3 60 166-233 7-71 (104)
212 3ctr_A Poly(A)-specific ribonu 96.9 0.0014 4.6E-08 48.6 5.0 52 168-228 7-58 (101)
213 1wwh_A Nucleoporin 35, nucleop 96.8 0.004 1.4E-07 47.6 7.1 63 165-234 22-84 (119)
214 3pq1_A Poly(A) RNA polymerase; 96.2 0.0027 9.2E-08 59.1 3.8 60 166-231 52-111 (464)
215 3p3d_A Nucleoporin 53; structu 95.3 0.01 3.6E-07 46.0 3.1 65 168-234 8-87 (132)
216 1uw4_A UPF3X; nonsense mediate 95.2 0.066 2.3E-06 38.8 7.0 59 168-228 2-64 (91)
217 3d45_A Poly(A)-specific ribonu 89.9 0.7 2.4E-05 43.2 7.4 54 167-229 440-493 (507)
218 1wey_A Calcipressin 1; structu 82.7 2.4 8E-05 31.3 5.3 57 167-229 5-66 (104)
219 2l08_A Regulator of nonsense t 82.6 0.94 3.2E-05 33.1 3.1 60 167-228 9-72 (97)
220 4e8u_A Putative uncharacterize 57.2 32 0.0011 27.4 6.9 46 179-227 33-81 (172)
221 3fry_A Probable copper-exporti 38.2 75 0.0026 20.1 6.3 60 166-232 5-64 (73)
222 3aqq_A Calcium-regulated heat 24.3 70 0.0024 24.7 3.7 11 208-218 73-83 (147)
223 1xn9_A 30S ribosomal protein S 20.9 1.9E+02 0.0067 20.7 5.3 47 177-224 28-79 (101)
224 3ulj_A LIN28B, DNA-binding pro 20.3 68 0.0023 22.6 2.7 8 208-215 19-26 (90)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=118.27 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=60.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.++++|||+|||+++++++|+++|++||.|. .++|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 86 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVE--SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678999999999999999999999999999 89998887655 899999999999999999864 6655
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.64 E-value=3.1e-16 Score=119.73 Aligned_cols=65 Identities=20% Similarity=0.428 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.++|||+|||+++++++|+++|++||.|. .++|..+++++||||||+|.+.++|++||+.+ ++.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~--~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~ 70 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNIL--SCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 70 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEE--EEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE
Confidence 46899999999999999999999999999 89999888777999999999999999999874 6654
No 3
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=9.1e-16 Score=110.66 Aligned_cols=68 Identities=24% Similarity=0.429 Sum_probs=60.9
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
....++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.++..|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~ 77 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV--DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRL 77 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEE--EEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEE
Confidence 34678999999999999999999999999999 89888876555 8999999999999999999877654
No 4
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=111.41 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=61.6
Q ss_pred ccccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 163 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 163 ~~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.....++|||+|||+.+++++|+++|++||.|. .|.|..++.+++|||||+|.+.++|++||+.+ +..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK--SCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI 80 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEE--EEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEe--EEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCc
Confidence 344679999999999999999999999999999 89999887777999999999999999999854 6554
No 5
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=114.90 Aligned_cols=68 Identities=18% Similarity=0.358 Sum_probs=60.8
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
....++|||+||++++++++|+++|.+||.|. .|.|..++.++ +|||||+|.+.++|++||+.+++.|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~ 93 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLT--DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 93 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCS--EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEE
Confidence 34679999999999999999999999999999 89998876544 8999999999999999998876655
No 6
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=113.21 Aligned_cols=68 Identities=19% Similarity=0.302 Sum_probs=60.3
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|++||.|. .|.|+.++. ..||||||+|.+.++|.+||..+++.|+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~--~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~ 77 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVL--NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYK 77 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEE--EEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEE--EEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEEC
Confidence 3568999999999999999999999999999 899888765 3389999999999999999996677664
No 7
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=111.81 Aligned_cols=69 Identities=23% Similarity=0.359 Sum_probs=61.3
Q ss_pred ccccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 163 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 163 ~~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
.....++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+++.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~ 82 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVV--DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTL 82 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEE--EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeE
Confidence 344679999999999999999999999999999 89888876554 8999999999999999999876655
No 8
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.1e-15 Score=110.09 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=61.5
Q ss_pred ccccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 163 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 163 ~~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
.....++|||+|||+++++++|+++|++||.|. .+.|..++...+|||||+|.+.++|++||+. ++..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--DVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV 80 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEE--EEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 344679999999999999999999999999999 8999888776799999999999999999986 46554
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.60 E-value=6.9e-15 Score=111.47 Aligned_cols=69 Identities=25% Similarity=0.397 Sum_probs=60.6
Q ss_pred ccccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 163 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 163 ~~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.....++|||+||++.+++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|++||+.+ ++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS--DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 82 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 334689999999999999999999999999999 89988876544 899999999999999999865 6554
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=6.6e-16 Score=113.33 Aligned_cols=61 Identities=26% Similarity=0.433 Sum_probs=55.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcC-ceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC
Q 026738 167 IKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~L~~~F~~fG-~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~ 229 (234)
+++|||+|||+++++++|+++|++|| .|. .|+|+.++.++ ||||||+|.+.++|++||+.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~--~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAR--EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCS--BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeE--EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 36899999999999999999999999 788 88888877654 899999999999999999875
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.5e-15 Score=109.14 Aligned_cols=68 Identities=28% Similarity=0.464 Sum_probs=60.5
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+++.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~ 77 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVT--EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIM 77 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEE--EEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEEC
Confidence 3578999999999999999999999999999 89998876544 89999999999999999996676653
No 12
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=3.8e-15 Score=113.28 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=59.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+||++++++++|+++|++||.|. .+.|..++.++ ||||||+|.+.++|++||+.+ +..|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~--~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~ 73 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVE--EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV 73 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCee--EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 468999999999999999999999999999 89998887655 899999999999999999865 6544
No 13
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=2.7e-15 Score=113.53 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=58.6
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
....++|||+||++++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.+++.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l 91 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVK--ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 91 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEE--EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeE--EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcC
Confidence 34678999999999999999999999999999 89998876544 8999999999999999999887554
No 14
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=8.3e-15 Score=111.52 Aligned_cols=68 Identities=19% Similarity=0.419 Sum_probs=60.1
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
....++|||+||++++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 107 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVI--SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV 107 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEE--EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34679999999999999999999999999999 89888776544 899999999999999999975 6654
No 15
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.1e-15 Score=107.34 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=60.0
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
....++|||+|||.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIA--DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 82 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEE--EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCee--EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34678999999999999999999999999999 89888876554 899999999999999999964 6554
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.3e-15 Score=109.22 Aligned_cols=69 Identities=22% Similarity=0.421 Sum_probs=60.7
Q ss_pred ccccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 163 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 163 ~~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.....++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSIS--RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY 82 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEE--EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee
Confidence 344689999999999999999999999999999 89988876544 899999999999999999965 6554
No 17
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.5e-15 Score=108.61 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=57.1
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 228 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a 228 (234)
....++|||+|||+++++++|+++|.+||.|. .+.|..++.++ +|||||+|.+.++|++||+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL--MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEE--EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeE--EEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 34678999999999999999999999999999 89888876544 89999999999999999985
No 18
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=106.16 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=56.8
Q ss_pred ceEEEEcCCCCCC------CHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 167 IKSVYVRNLPPSV------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 167 ~~~vfV~nLp~~v------t~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
+++|||+|||..+ ++++|+++|++||.|. .+.|..+.+..+|||||+|.+.++|.+||+.+ +..|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~--~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--NDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE--EEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE--EEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 3689999999999 6799999999999999 78877555556999999999999999999975 6655
No 19
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5e-15 Score=112.21 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=60.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+||++++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|++||..+++.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~ 92 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVR--DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLL 92 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEE--EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEe--EEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeC
Confidence 4678999999999999999999999999999 89998877544 89999999999999999955676653
No 20
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=3.7e-15 Score=108.60 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=54.9
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcC--ceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 168 KSVYVRNLPPSVSESEIAEEFKKFG--ELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 168 ~~vfV~nLp~~vt~~~L~~~F~~fG--~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.+|||+||++++++++|+++|++|| .|. .+.|..++.+| +|||||+|.+.++|++||+.+ +..|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~--~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~ 70 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDIL--EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 70 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCC--CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceE--EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 5799999999999999999999999 898 89988886555 899999999999999999765 6554
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.4e-15 Score=108.87 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=59.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+ ++.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL 82 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEE--EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 3678999999999999999999999999999 89888876444 899999999999999999974 6655
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.5e-15 Score=109.34 Aligned_cols=68 Identities=25% Similarity=0.416 Sum_probs=59.6
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeec-C--CCCccEEEEEeCCHHHHHHHHHhC--CccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR-K--DVGICYAFVEFEDMTGVRNAVEVC--ILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~-~--~~~rGfaFVeF~~~e~a~~Al~a~--~~~i 233 (234)
....++|||+|||+++++++|+++|++||.|. .|.|..+ + +..+|||||+|.+.++|++||+.+ +..|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELK--TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeE--EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 34678999999999999999999999999999 8988877 3 334899999999999999999874 6655
No 23
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=107.84 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=60.5
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i~ 234 (234)
..+++|||+||+.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+. ++..|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK--NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeE--EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 3578999999999999999999999999999 89988877655 89999999999999999986 476653
No 24
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-14 Score=110.64 Aligned_cols=67 Identities=19% Similarity=0.426 Sum_probs=60.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+||+.++++++|+++|+.||.|. .|.|..++.++ +|||||+|.+.++|.+||+.+ +..|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 109 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIE--SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI 109 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEE--EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678999999999999999999999999999 89988887655 899999999999999999964 6555
No 25
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.6e-15 Score=109.16 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=60.4
Q ss_pred ccccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 163 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 163 ~~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.....++|||+|||+++++++|+++|++||.|. .+.|..+.+..+|||||+|.+.++|.+||+.+ +..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTIT--SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEE--EEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 344789999999999999999999999999999 88888874445899999999999999999964 6655
No 26
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=8.2e-15 Score=118.14 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=59.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcC--ceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFG--ELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG--~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i~ 234 (234)
..++|||+||++++++++|+++|++|| .|. .|.|+.++.+| ||||||+|.+.++|++||+.+ +..|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~--~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVV--ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEE--EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 568999999999999999999999999 898 89998886665 899999999999999999995 66653
No 27
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=110.69 Aligned_cols=69 Identities=19% Similarity=0.411 Sum_probs=60.4
Q ss_pred ccccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 163 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 163 ~~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
.+...++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|++||+.+...|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~ 83 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIE--EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPII 83 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEE--EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCee--EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcC
Confidence 344679999999999999999999999999999 89998876544 8999999999999999999874333
No 28
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.7e-15 Score=109.58 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=58.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeece-EEEeecC-CCCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEG-VVIRSRK-DVGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~-v~i~~~~-~~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|++||.|. . |.|..+. +..+|||||+|.+.++|++||+.++..|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVP--NGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEE--EEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcc--eeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhC
Confidence 4678999999999999999999999999998 5 7776662 23389999999999999999998776664
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=1.2e-14 Score=103.58 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=57.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
+++|||+|||.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+. ++..|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYL--SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEE--EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence 46899999999999999999999999999 88888776555 89999999999999999996 46654
No 30
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.2e-14 Score=108.10 Aligned_cols=66 Identities=24% Similarity=0.420 Sum_probs=58.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
...++|||+|||+++++++|+++|++|| |. .|.|..++.++ +|||||+|.+.++|++||..+++.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 80 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR--SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALL 80 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EE--EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce--EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeE
Confidence 4579999999999999999999999997 88 89998887655 8999999999999999995557655
No 31
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=104.39 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=58.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRIS--DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 73 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEe--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 578999999999999999999999999999 89888875544 899999999999999999964 6554
No 32
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=111.75 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=60.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+||+.++++++|+++|++||.|. .+.|..+++..+|||||+|.+.++|++||+. ++..|
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~ 94 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--DVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV 94 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCS--CEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEE--EEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3678999999999999999999999999999 8999888776799999999999999999996 46654
No 33
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=9.4e-15 Score=109.81 Aligned_cols=63 Identities=25% Similarity=0.398 Sum_probs=57.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~ 229 (234)
...++|||+|||+++++++|+++|.+||.|. .|.|..++.++ +|||||+|.+.++|.+||+.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 77 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLK--YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 77 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHh
Confidence 4578999999999999999999999999999 89998876654 899999999999999999875
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.56 E-value=1.5e-14 Score=109.76 Aligned_cols=67 Identities=16% Similarity=0.418 Sum_probs=59.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 92 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVV--SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 92 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCS--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE
Confidence 4578999999999999999999999999999 89888876544 899999999999999999764 6554
No 35
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=4.3e-15 Score=110.63 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=59.5
Q ss_pred cceEEEEcCCCC------CCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPP------SVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~------~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+ ++++++|+++|++||.|. .+.|..++.++ ||||||+|.+.++|++||+.+ +..|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~--~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV--NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE--EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe--EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 468999999999 999999999999999999 89998887655 899999999999999999764 6655
No 36
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=106.64 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=59.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeece--------EEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEG--------VVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~--------v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i~ 234 (234)
..++|||+||++++++++|+++|++||.|. . +.|..++.++ +|||||+|.+.++|++||+. ++..|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIK--TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBC--EETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEe--eccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 468999999999999999999999999998 7 8888876555 89999999999999999986 466553
No 37
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=1.5e-14 Score=105.18 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=59.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
..++|||+|||+++++++|+++|++||.|. .+.|..+.+..+|||||+|.+.++|++||+. ++..|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 73 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVL--YADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKL 73 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEE--EEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 578999999999999999999999999999 8888876655699999999999999999996 46554
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=106.76 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=59.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS--ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF 75 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEE--EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3678999999999999999999999999999 89888876444 899999999999999999665 6554
No 39
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.1e-15 Score=112.19 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=59.5
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCce-eeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGEL-SSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I-~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|+.||.| . .|.|..++. ..+|||||+|.+.++|++||+.++..|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDEN--AVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCST--TEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEET
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCC--eEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccC
Confidence 357899999999999999999999999999 7 788887762 2389999999999999999988776653
No 40
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=106.47 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=58.5
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+|||.++++++|+++|++||.|. .+.|..++. ..+|||||+|.+.++|.+||+. ++..|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVK--DLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--EEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578999999999999999999999999999 898888762 2379999999999999999976 46655
No 41
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-14 Score=107.96 Aligned_cols=67 Identities=21% Similarity=0.371 Sum_probs=59.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+||+..+++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+. ++..|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i 93 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIE--SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 93 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEE--EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3678999999999999999999999999999 89888876655 89999999999999999985 46655
No 42
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=107.07 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=59.2
Q ss_pred cceEEEEcCCCCCCCHHHHH----HHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~----~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
++++|||+|||+++++++|+ ++|++||.|. .+.|..++.+ ||||||+|.+.++|++||+.+ +..|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~--~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~ 77 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVK--SVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKI 77 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--EEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEE--EEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 57899999999999999999 9999999999 8999888776 999999999999999999964 6554
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.55 E-value=5.3e-15 Score=109.85 Aligned_cols=65 Identities=14% Similarity=0.349 Sum_probs=56.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~ 229 (234)
....+|||+||++++++++|+++|++||.+....|+|.+|+.++ ||||||+|.+.++|++||+.+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~l 73 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQIL 73 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHH
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHh
Confidence 35789999999999999999999999996432278888887655 899999999999999999875
No 44
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=5.9e-15 Score=103.47 Aligned_cols=64 Identities=19% Similarity=0.368 Sum_probs=56.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 169 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 169 ~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
+|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|++||+.++..|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVD--DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCS--EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEE--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEEC
Confidence 589999999999999999999999999 88888776444 89999999999999999986677664
No 45
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=105.81 Aligned_cols=67 Identities=28% Similarity=0.399 Sum_probs=59.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.+ +..|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVV--KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEE--EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 3578999999999999999999999999999 89888876544 899999999999999999765 6554
No 46
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.55 E-value=3.1e-14 Score=106.01 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=58.3
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC-CccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV-GICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~-~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++.. .+|||||+|.+.++|.+||+.+ +..|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVID--ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 3578999999999999999999999999999 8888877632 2899999999999999999864 5543
No 47
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=9e-15 Score=105.54 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=58.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
+.++|||+|||.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||..++..|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~ 72 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVN--RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 72 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEE--EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEE
Confidence 568999999999999999999999999999 89888875444 8999999999999999995556655
No 48
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.54 E-value=1.9e-14 Score=107.42 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=58.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-Ccc
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILM 232 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~ 232 (234)
...++|||+|||.++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|.+||+.+ +..
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY--ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQK 79 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCC--EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCc
Confidence 4678999999999999999999999999999 89988876544 899999999999999999865 543
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.54 E-value=1.4e-14 Score=103.68 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=58.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
..++|||+|||.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+. ++..|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEE--EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEE--EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 578999999999999999999999999999 88887775555 89999999999999999965 46654
No 50
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=4.3e-15 Score=104.02 Aligned_cols=64 Identities=22% Similarity=0.403 Sum_probs=57.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 169 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 169 ~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
+|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.+++.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~ 66 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVE--SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 66 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCS--EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeEC
Confidence 589999999999999999999999999 88887776544 89999999999999999998877653
No 51
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=108.16 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=53.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 228 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a 228 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..+ ||||||+|.+.++|.+||+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~--~v~i~~~----kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVT--NILMLKG----KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEE--EEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEECC----CCEEEEEECCHHHHHHHHHH
Confidence 4678999999999999999999999999999 7877653 89999999999999999985
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=106.69 Aligned_cols=67 Identities=21% Similarity=0.399 Sum_probs=59.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.+ +..|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQIS--EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCC--EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999999999 89988876544 899999999999999999664 6555
No 53
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.3e-15 Score=105.11 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=58.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIV--STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV 72 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEE--EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE
Confidence 578999999999999999999999999999 88888876544 899999999999999999864 5443
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=104.70 Aligned_cols=66 Identities=26% Similarity=0.446 Sum_probs=58.8
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
..++|||+||+.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+. +++.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKID--NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 72 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEe--EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 468999999999999999999999999999 89888876544 89999999999999999995 46655
No 55
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=106.78 Aligned_cols=67 Identities=25% Similarity=0.207 Sum_probs=56.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|.+||.|. .+.++.++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIP--GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCT--TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 3568999999999999999999999999998 55555555444 899999999999999999765 5554
No 56
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=7e-15 Score=103.31 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=57.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 168 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 168 ~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.+...|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVK--ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCC--CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCcc
Confidence 4799999999999999999999999999 89888876544 8999999999999999999876443
No 57
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=109.49 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=54.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
...++|||+|||+++++++|+++|++||.|. .+.|+.+ ||||||+|.+.++|.+||+.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~--~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--NLLMLKG----KNQAFIEMNTEEAANTMVNYY 72 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEE--EEEEETT----TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEcC----CCEEEEEECCHHHHHHHHHHh
Confidence 3578999999999999999999999999999 8888764 799999999999999999853
No 58
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.54 E-value=1.5e-14 Score=106.26 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=57.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.++|||+||+.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.+ +..|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 69 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVI--NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL 69 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEE--EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 47999999999999999999999999999 89888876544 899999999999999999764 6654
No 59
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=4.4e-14 Score=106.54 Aligned_cols=59 Identities=31% Similarity=0.411 Sum_probs=53.3
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
...++|||+||++++++++|+++|++||.|. .|.|.. +||||||+|.+.++|.+||+.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~--~v~i~~----~kg~aFVef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTIC--YVMMMP----FKRQALVEFENIDSAKECVTFA 71 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEE--EEEEET----TTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEC----CCCEEEEEECCHHHHHHHHHHh
Confidence 3568999999999999999999999999999 787765 3799999999999999999853
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=106.92 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=57.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC---CccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV---GICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~---~rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
...++|||+|||+++++++|+++|++|| |. .|.|..++.+ .+|||||+|.+.++|++||..++..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~--~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 81 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS--AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESL 81 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EE--EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ce--EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEe
Confidence 3568999999999999999999999999 98 8998887654 38999999999999999994446654
No 61
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=1.9e-14 Score=110.31 Aligned_cols=68 Identities=24% Similarity=0.154 Sum_probs=59.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCc---eeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGE---LSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~---I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|+.||. |. .|+|..++. ..+|||||+|.+.++|++||+.++..|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~--~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVA--GVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMG 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGG--GEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCce--eEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 46789999999999999999999999999 77 788877655 2389999999999999999996676653
No 62
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=107.13 Aligned_cols=67 Identities=21% Similarity=0.414 Sum_probs=59.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+.+++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVV--SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 75 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCS--EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCee--EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 3578999999999999999999999999999 88888876555 899999999999999999865 6655
No 63
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=1.8e-14 Score=112.39 Aligned_cols=67 Identities=24% Similarity=0.307 Sum_probs=59.5
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC--CccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~--~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .|.|..++.+ .+|||||+|.+.++|++||+. ++..|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i 113 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIA--DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 113 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEE--EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578999999999999999999999999999 8998887654 489999999999999999996 46655
No 64
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=106.80 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=59.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+. +++.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVG--DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL 80 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3578999999999999999999999999999 89888876544 89999999999999999995 46655
No 65
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=113.60 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=57.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-Cc
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-IL 231 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~ 231 (234)
...++|||+||++++++++|+++|++||.|....|+|+.++.++ ||||||+|.+. +|.+||..+ +.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 45689999999999999999999999999971138998887555 89999999999 999999876 54
No 66
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=105.39 Aligned_cols=66 Identities=24% Similarity=0.436 Sum_probs=58.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceE-EEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV-VIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v-~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||.++++++|+++|++||.|. .+ .|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVIL--QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 73 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBS--SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 468999999999999999999999999998 77 888775444 899999999999999999964 6554
No 67
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=108.04 Aligned_cols=67 Identities=22% Similarity=0.343 Sum_probs=59.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+. ++..|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCC--CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEE--EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999999999 89888775544 89999999999999999976 46554
No 68
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=108.08 Aligned_cols=67 Identities=22% Similarity=0.115 Sum_probs=56.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|+.|| +. .|.|..++. ..+|||||+|.+.++|++||+.++..|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 80 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQ 80 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CS--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ce--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeEC
Confidence 3568999999999999999999999999 44 688877762 2389999999999999999977676653
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.53 E-value=3.1e-14 Score=107.04 Aligned_cols=67 Identities=25% Similarity=0.336 Sum_probs=59.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+|||..+++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||.. ++..|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIK--NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEE--EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4679999999999999999999999999999 88888776554 89999999999999999985 46654
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=106.13 Aligned_cols=66 Identities=20% Similarity=0.375 Sum_probs=58.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-----CCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-----VGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-----~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+++++++|+++|++||.|. .+.|..++. ..+|||||+|.+.++|++||+.+ +..|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIK--SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV 75 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee
Confidence 568999999999999999999999999999 888877654 33899999999999999999974 6654
No 71
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.5e-14 Score=104.99 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=58.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhh-cCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-Ccc
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKK-FGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILM 232 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~-fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~ 232 (234)
...++|||+||++++++++|+++|.+ ||.|. .+.|..++ ++ +|||||+|.+.++|.+||+.+ +..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~--~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR--GGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEE--EEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeE--EEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 35789999999999999999999999 99999 89888876 44 899999999999999999965 554
No 72
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=103.45 Aligned_cols=67 Identities=27% Similarity=0.344 Sum_probs=58.8
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC-CccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV-GICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~-~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+|||+.+++++|+++|++||.|. .+.|..++.. .+|||||+|.+.++|++||+. ++..|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLT--KVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL 82 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--EEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678999999999999999999999999999 8888877642 389999999999999999995 46554
No 73
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=4.3e-14 Score=110.11 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=58.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||..+++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 130 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 130 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEE--EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEE--EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678999999999999999999999999999 88888775544 899999999999999999765 5544
No 74
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=1.6e-14 Score=105.60 Aligned_cols=66 Identities=26% Similarity=0.215 Sum_probs=56.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
..++|||+|||+++++++|+++|.+||.|. .+.++.++.++ +|||||+|.+.++|++||+. ++..|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIP--GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCT--TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcc--ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE
Confidence 468999999999999999999999999998 66666655544 89999999999999999986 46654
No 75
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=106.46 Aligned_cols=68 Identities=22% Similarity=0.157 Sum_probs=59.0
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC-CccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV-GICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~-~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
....++|||+||++++++++|+++|.+||.|. .+.|..++.. .+|||||+|.+.++|++||+. ++..|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV--RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 81 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 34678999999999999999999999999999 8888877642 289999999999999999995 46554
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=3.7e-14 Score=108.78 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=59.4
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
....++|||+||++++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||..++..|
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~ 102 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSIN--RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVF 102 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEE--EEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeE
Confidence 34678999999999999999999999999999 88888775444 8999999999999999995557655
No 77
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=110.51 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=56.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|..||.|. .+.++.++.++ +|||||+|.+.++|.+||..++..|+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVE--DSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMG 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCT--TTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCST
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcc--ceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeEC
Confidence 3568999999999999999999999999998 43333333333 89999999999999999996577664
No 78
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.51 E-value=4.8e-14 Score=107.77 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=58.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecC-CCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~-~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+||+.++++++|+++|++||.|. .|.|..++ +..+|||||+|.+.++|++||+.+ +..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~ 73 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPIS--EVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL 73 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCS--EEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999999999 89888876 223899999999999999999875 6655
No 79
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=107.44 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=57.8
Q ss_pred cceEEEEcCCCCCC------CHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSV------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~v------t~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+.+ ++++|+++|++||.|. .+.|....+..+|||||+|.+.++|.+||+.+ |..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~--~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--NDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE--EEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE--EEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 46899999999999 7899999999999999 78887555556899999999999999999975 6655
No 80
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=108.41 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=59.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCc---eeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGE---LSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~---I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|+.||. |. .|.|..++. ..+|||||+|.+.++|++||+.++..|+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~--~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 80 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN--GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMG 80 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTT--TEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcc--eEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeC
Confidence 46789999999999999999999999998 77 788877665 3489999999999999999996676654
No 81
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3e-14 Score=108.38 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
.+.++|||+|||+++++++|+++|+.| .|. .|.|..++. +.+|||||+|.+.++|++||..++..|+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 81 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVD--AVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMI 81 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCC--EEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-Cee--EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 356899999999999999999999999 787 788887654 3489999999999999999977676654
No 82
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=1.6e-14 Score=107.14 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=57.8
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++ ++ +|||||+|.+.++|++||+ +++.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~ 73 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVK--EVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINF 73 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEE--EEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--EEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeE
Confidence 3578999999999999999999999999999 89888876 44 8999999999999999998 55443
No 83
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.6e-14 Score=106.59 Aligned_cols=70 Identities=27% Similarity=0.325 Sum_probs=59.1
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeec------eEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSE------GVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~------~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
....++|||+|||+++++++|+++|++||.|.+. .+.|..++.++ +|||||+|.+.++|++||+. ++..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 3467999999999999999999999999999721 27777775544 89999999999999999986 46654
No 84
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.5e-14 Score=103.20 Aligned_cols=67 Identities=25% Similarity=0.369 Sum_probs=57.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+++++++|+++|++||.|.. .+.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVM-SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCC-EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999999862 47777776544 899999999999999999964 5544
No 85
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=102.50 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=58.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC---CccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV---GICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~---~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
..++|||+|||.++++++|+++|++||.|. .+.|..++.+ .+|||||+|.+.++|++||+. ++..|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIK--MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI 72 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEE--EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE
Confidence 468999999999999999999999999999 8888777643 479999999999999999996 46655
No 86
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=107.34 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=56.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecC---CCCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK---DVGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~---~~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
..++|||+||++++++++|+++|++|| |. .+.|..++ +..+|||||+|.+.++|.+||..++..|+
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~--~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~ 86 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-IS--AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG 86 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EE--EEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-Ce--EEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence 578999999999999999999999999 98 89888775 33489999999999999999955576653
No 87
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.1e-14 Score=104.40 Aligned_cols=66 Identities=32% Similarity=0.544 Sum_probs=57.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..+. ..+|||||+|.+.++|++||+.+ +..|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~ 86 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR--DIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDY 86 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4578999999999999999999999999999 78886543 35899999999999999999654 6554
No 88
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.50 E-value=7.8e-14 Score=104.19 Aligned_cols=66 Identities=27% Similarity=0.318 Sum_probs=58.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+||++.+++++|+++|++||.|. .+.|..++ ++ +|||||+|.+.++|++||+. ++..|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 95 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLK--KAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL 95 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4679999999999999999999999999999 88888776 44 89999999999999999996 46654
No 89
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.9e-14 Score=107.40 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=53.3
Q ss_pred cceEEEEcCCCC-CCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC
Q 026738 166 EIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 166 ~~~~vfV~nLp~-~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
.+++|||+|||+ ++++++|+++|++||.|. .+.|+.+ ||||||+|.+.++|.+||+.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~--~v~i~~~----kg~aFVef~~~~~A~~Ai~~l 72 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS--NHLILNK----INEAFIEMATTEDAQAAVDYY 72 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEE--EEEECSS----SSCEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEE--EEEEEcC----CCEEEEEECCHHHHHHHHHHH
Confidence 578999999999 999999999999999999 8888764 689999999999999999864
No 90
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.3e-14 Score=108.45 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=54.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
..+++|||+|||+++++++|+++|++||.|. .|.|..+ ||||||+|.+.++|.+||+.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~--~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l 87 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--NLLMLKG----KNQAFIEMNTEEAANTMVNYY 87 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCC--EEEEEGG----GTEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEeCC----CCEEEEEECCHHHHHHHHHHh
Confidence 4578999999999999999999999999999 8888764 799999999999999999864
No 91
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-13 Score=104.00 Aligned_cols=66 Identities=21% Similarity=0.337 Sum_probs=58.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|.+||.|. .+.|..++ ++ +|||||+|.+.++|.+||+.+ +..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVI--STRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEE--EEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578999999999999999999999999999 89888876 44 899999999999999999954 6655
No 92
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.2e-14 Score=109.89 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=58.3
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCce----eeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGEL----SSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I----~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|++||.| . .|.|..++. +.+|||||+|.+.++|++||+.++..|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~--~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~ 93 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKE--GILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLG 93 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGG--GEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcc--eEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeC
Confidence 467899999999999999999999999975 5 688777642 2389999999999999999998776654
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.49 E-value=7.3e-14 Score=107.44 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=59.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i~ 234 (234)
...++|||+||++++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|++||+. ++..|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK--NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3578999999999999999999999999999 89888876544 89999999999999999975 476653
No 94
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.49 E-value=2.5e-14 Score=103.70 Aligned_cols=63 Identities=24% Similarity=0.425 Sum_probs=56.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 168 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 168 ~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
++|||+|||.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.+ |.+|+..+ +..|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~ 67 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVF--NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF 67 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCS--EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEE--EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE
Confidence 6899999999999999999999999999 89888876544 899999999999 99999975 6554
No 95
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=98.58 Aligned_cols=63 Identities=25% Similarity=0.479 Sum_probs=55.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh--CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV--CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a--~~~~i 233 (234)
...++|||+|||.++++++|+++|++||.|. .+.+..+ +|||||+|.+.++|.+||+. ++..|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~--~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIR--TITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIV 74 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEE--EEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEe--EEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeE
Confidence 4578999999999999999999999999999 8888763 78999999999999999996 45544
No 96
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.48 E-value=1e-13 Score=112.94 Aligned_cols=67 Identities=15% Similarity=0.365 Sum_probs=60.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
...++|||+|||+++++++|+++|+.||.|. .+.|+.++.++ +|||||+|.+.++|.+||+.+++.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 79 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLT--DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEE
Confidence 4678999999999999999999999999999 89888876655 8999999999999999999877654
No 97
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.9e-14 Score=104.21 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=55.8
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCc-eeeceEEEe-ecCCC--CccEEEEEeCCHHHHHHHHHhC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGE-LSSEGVVIR-SRKDV--GICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~-I~~~~v~i~-~~~~~--~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
..++|||+|||+++++++|+++|.+||. |. .+.|. .++.+ .+|||||+|.+.++|.+||+.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~--~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVL--DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEE--EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCce--EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 5789999999999999999999999998 98 78877 66654 3899999999999999999974
No 98
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.48 E-value=9.8e-14 Score=104.23 Aligned_cols=59 Identities=36% Similarity=0.479 Sum_probs=53.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
..++.|||+|||+++++++|+++|++||.|. .+.+.+ .||||||+|.+.++|.+||+.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~--~v~i~~----~kg~AFVef~~~~~A~~Av~~l 77 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPIS--YVVVMP----KKRQALVEFEDVLGACNAVNYA 77 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEET----TTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEE--EEEEEc----CCCEEEEEECCHHHHHHHHHHh
Confidence 3578999999999999999999999999999 787764 4789999999999999999864
No 99
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.48 E-value=6.7e-14 Score=119.41 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=58.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcC--ceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFG--ELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG--~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+||++++++++|+++|++|| .|. .|.|+.++.++ ||||||+|.+.++|++||+.+ +..|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~--~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~ 137 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDIL--EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 137 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEE--EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE
Confidence 567999999999999999999999999 999 89998887655 899999999999999999965 6655
No 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=106.66 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=58.9
Q ss_pred ccceEEEEcCCCCCCCHHHHH---HHHhhcCceeeceEEEeecCCC-----CccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIA---EEFKKFGELSSEGVVIRSRKDV-----GICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~---~~F~~fG~I~~~~v~i~~~~~~-----~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+|||+++++++|+ ++|++||.|. .+.|..++.+ .+|||||+|.+.++|++||+. ++..|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~--~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH--KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEE--EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEE--EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 356799999999999999999 9999999999 8988887653 369999999999999999998 46654
No 101
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=100.22 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=57.3
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|+.| .|. .+.|..+.. ..+|||||+|.+.++|++||+.++..|+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~--~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~ 75 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMG 75 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCS--EEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEET
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-Cce--EEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeC
Confidence 357899999999999999999999999 888 788887732 2389999999999999999995466553
No 102
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=2.5e-14 Score=105.98 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=54.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeec--CCCCccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR--KDVGICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~--~~~~rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
..++|||+||++++++++|+++|++||.|. . .++.+ .+..+|||||+|.+.++|++||+.+++.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 82 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKN--D-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKV 82 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHH--T-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcc--e-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEE
Confidence 578999999999999999999999999998 4 33333 23458999999999999999999556665
No 103
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=5.2e-14 Score=111.20 Aligned_cols=68 Identities=22% Similarity=0.120 Sum_probs=59.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCc---eeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGE---LSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~---I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|++||. |. .|.|..++. ..+|||||+|.+.++|++||+.++..|+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~--~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~ 113 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA--GVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMG 113 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST--TEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee--EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence 46789999999999999999999999999 77 788887765 2389999999999999999995566553
No 104
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.47 E-value=2.1e-13 Score=104.77 Aligned_cols=67 Identities=25% Similarity=0.271 Sum_probs=58.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecC-CCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~-~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
..+++|||+||+.++++++|+++|++||.|. .+.|..++ +..+|||||+|.+.++|.+||+. ++..|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 101 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK--KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 101 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCS--EEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4679999999999999999999999999999 88888776 22389999999999999999995 46555
No 105
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=102.23 Aligned_cols=63 Identities=25% Similarity=0.418 Sum_probs=55.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||..+++++|+++|++||.|. .+.|..+ +|||||+|.+.++|.+||+.+ +..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCS--EEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeE--EEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4578999999999999999999999999999 8888753 789999999999999999764 6554
No 106
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.47 E-value=7.3e-14 Score=102.50 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=54.8
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-Ccc
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILM 232 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~ 232 (234)
.+..||||||++.+++++|+++|.+||+|. .+.+.. .||||||+|.+.++|.+||+++ +..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~--~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~ 67 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLV--SFHPYL----NQGIALCKYTTREEANKAQMALNNCV 67 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEE--EEEEET----TTTEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEE--EEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCE
Confidence 367899999999999999999999999999 788765 5899999999999999999987 443
No 107
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.7e-13 Score=103.00 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=55.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+++++++|+++|.+||.|. .+.|..+ |||||+|.+.++|++||+.+ +..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVC--YADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEE--EEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--EEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 578999999999999999999999999999 8888775 89999999999999999965 5543
No 108
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.47 E-value=1.4e-13 Score=109.71 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=60.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC--CccEEEEEeCCHHHHHHHHHhC-CccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEVC-ILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~--~rGfaFVeF~~~e~a~~Al~a~-~~~i~ 234 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..++.+ .+|||||+|.+.++|.+||+.+ +..|+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEE--EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3578999999999999999999999999999 8998887544 4899999999999999999874 66553
No 109
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=7.4e-14 Score=109.02 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=57.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|+.|+ |..+.|.|..++. ..+|||||+|.+.++|++||+.++..|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~ 109 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIG 109 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEEC
Confidence 3568899999999999999999999995 4422577776654 3489999999999999999998776653
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2.4e-13 Score=98.61 Aligned_cols=61 Identities=26% Similarity=0.442 Sum_probs=54.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||.++++++|+++|++||.|. .+.|. +|||||+|.+.++|++||+.+ +..|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~ 67 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVL--ECDII------KNYGFVHIEDKTAAEDAIRNLHHYKL 67 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEE--EEEEE------TTEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEE------CCEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3579999999999999999999999999999 78776 689999999999999999764 5544
No 111
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=2.2e-13 Score=108.75 Aligned_cols=67 Identities=24% Similarity=0.307 Sum_probs=60.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|++||+.+ ++.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 106 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIK--KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL 106 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999999999 89998887655 799999999999999999974 6654
No 112
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.46 E-value=2.3e-13 Score=102.97 Aligned_cols=65 Identities=25% Similarity=0.408 Sum_probs=57.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
.+++|||+|||+++++++|+++|++||.|. .+.|..+. .++|||||+|.+.++|.+||+. ++..|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~ 72 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIR--QIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNV 72 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 468999999999999999999999999999 88887653 3489999999999999999995 46655
No 113
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.7e-13 Score=101.45 Aligned_cols=62 Identities=13% Similarity=0.311 Sum_probs=55.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+||+.++++++|+++|++||.|. .+.|.. .+|||||+|.+.++|.+||..+ +..|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~ 88 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFIL--DFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPF 88 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCS--EEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEE--EEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 468999999999999999999999999999 788763 5899999999999999999764 6554
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.46 E-value=9.3e-14 Score=106.06 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=55.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcC-ceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG-~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+++++++|+++|++|| .|. .+.|..+ ..+|||||+|.+.++|++||+.+ +..|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~--~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l 92 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETT--FSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEF 92 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCS--EEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeE--EEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 568999999999999999999999999 898 7777543 36899999999999999999864 6554
No 115
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.1e-13 Score=104.44 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=53.4
Q ss_pred ccceEEEEcCCCCC-CCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC
Q 026738 165 EEIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 165 ~~~~~vfV~nLp~~-vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
..+++|||+|||++ +++++|+++|++||.|. .+.|.+ .||||||+|.+.++|.+||+.+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~--~v~i~~----~kg~aFVef~~~~~A~~Ai~~l 82 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK--NYILMR----MKSQAFIEMETREDAMAMVDHC 82 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCS--EEEEET----TTTEEEEECSSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEE--EEEEec----CCCEEEEEECCHHHHHHHHHHh
Confidence 35789999999998 99999999999999999 888864 4899999999999999999853
No 116
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=104.03 Aligned_cols=62 Identities=29% Similarity=0.430 Sum_probs=55.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+++++++|+++|++||.|. .|.|.. .+|||||+|.+.++|++||+.+ +..|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~ 71 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLG--RVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKF 71 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 578999999999999999999999999998 777754 5789999999999999999865 6554
No 117
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.45 E-value=2.4e-13 Score=109.80 Aligned_cols=66 Identities=26% Similarity=0.352 Sum_probs=58.7
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.+++|||+|||+.+++.+|+.+|++||.|. .|.|..++.++ +|||||+|.+.+.|.+||..+ +..|
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIK--NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEE--EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 578999999999999999999999999999 89998876555 899999999999999999864 6554
No 118
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.5e-13 Score=99.88 Aligned_cols=62 Identities=19% Similarity=0.380 Sum_probs=55.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||.++++++|+++|++||.|. .+.+..+ +|||||+|.+.++|++||+.+ +..|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIR--TIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPL 78 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEE--EEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 568999999999999999999999999999 7877653 789999999999999999964 6655
No 119
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=102.87 Aligned_cols=64 Identities=16% Similarity=0.310 Sum_probs=56.9
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
....++|||+||+..+++++|+++|++||.|. .|.|..+ +|||||+|.+.++|.+||+.+ +..|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~ 86 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM--EIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTI 86 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEE--EEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34678999999999999999999999999999 8888775 789999999999999999764 6554
No 120
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=2.5e-13 Score=106.01 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=55.1
Q ss_pred cceEEEEcCCCCCCCHHHHH----HHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~----~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+||++.+++++|+ ++|++||.|. .|.+.. .+..||||||+|.+.++|.+||+.+ |..|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~--~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDIL--DIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--EEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE--EEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 46789999999999999876 6999999998 777653 3446999999999999999999876 6654
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.45 E-value=1.8e-13 Score=114.39 Aligned_cols=62 Identities=24% Similarity=0.452 Sum_probs=56.7
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~ 229 (234)
..++|||||||+++++++|+++|++||.|. .|+|++++.++ +|||||+|.+.++|.+||+.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~ 77 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPIL--SIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 77 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEE--EEEEecccCCCCccccccceeCCHHHHHHHHHHh
Confidence 457899999999999999999999999999 89998887655 899999999999999999875
No 122
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=1e-13 Score=101.20 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=49.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHH
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 225 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~A 225 (234)
...++|||+|||+++++++|+++|++||.|. .+.|..+ .||||||+|.+.++|+++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~--~v~i~~~---srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVV--DVFIPKP---FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEECCSS---CCSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEE--EEEEeeC---CCCEEEEEECCHHHHHHH
Confidence 3578999999999999999999999999999 8888764 689999999999999854
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=99.41 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=54.5
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i~ 234 (234)
...++|||+||++++++++|+++|++||.|. . .+..+ ..+|||||+|.+.++|++||+.+ +..|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~--~-~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP--L-RLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC--S-EEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE--E-EEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3568999999999999999999999999996 3 34443 35899999999999999999774 66653
No 124
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=101.78 Aligned_cols=61 Identities=33% Similarity=0.419 Sum_probs=54.9
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 168 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 168 ~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
++|||+|||.++++++|+++|++||.|. .+.|..+ .+|||||+|.+.++|.+||+.+ +..|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~ 62 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR--TVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVI 62 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS--EEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeE
Confidence 5899999999999999999999999999 8888876 6899999999999999999964 5444
No 125
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=1.9e-13 Score=103.19 Aligned_cols=62 Identities=35% Similarity=0.494 Sum_probs=55.3
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
....++|||+||++++++++|+++|++||.|. .+.|. +|||||+|.+.++|++||+. ++..|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMK--EVKIL------NGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCC--EEEEE------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--EEEEE------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34678999999999999999999999999999 78776 78999999999999999986 46554
No 126
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.3e-13 Score=102.02 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=54.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+++++++|+++|.+||.|....+.+....+..+|||||+|.+.++|++||+.+ +..|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 92 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL 92 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5689999999999999999999999999841112222224455899999999999999999874 6655
No 127
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.3e-13 Score=98.75 Aligned_cols=64 Identities=27% Similarity=0.469 Sum_probs=55.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
..++|||+|||+++++++|+++|++||.|. .| +.++.+++ ||||+|.+.++|.+||..+++.|+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~ 70 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVA--SV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLG 70 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEE--EE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeE--EE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEEC
Confidence 467999999999999999999999999998 66 44555556 999999999999999995576653
No 128
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=101.76 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=53.9
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeec-CCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR-KDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~-~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
....++|||+|||+++++++|+++|++||.|. |..+ .+..+|||||+|.+.++|++||+.+ +..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-----~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK-----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI 78 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-----CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-----EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 34679999999999999999999999999875 2333 3345899999999999999999954 6554
No 129
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.43 E-value=1.2e-13 Score=108.40 Aligned_cols=68 Identities=25% Similarity=0.370 Sum_probs=59.5
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC--CccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~--~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
....++|||+|||+++++++|+++|++||.|. .|.|..++.+ .+|||||+|.+.++|++||+.+ +..|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS--EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34678999999999999999999999999999 8888877544 4899999999999999999864 6555
No 130
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4e-13 Score=97.83 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=54.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|. ++||||+|.+.++|.+||+.+ ++.|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~ 69 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVI--ECDIV------KDYAFVHMERAEDAVEAIRGLDNTEF 69 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCC--EEEEC------SSEEEEEESCHHHHHHHHHHHTTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEE------CCEEEEEECCHHHHHHHHHHhCCCee
Confidence 4679999999999999999999999999999 78775 459999999999999999764 6554
No 131
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.1e-13 Score=98.75 Aligned_cols=61 Identities=25% Similarity=0.502 Sum_probs=54.1
Q ss_pred ccceEEEEcCCCC-CCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~-~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+ ++++++|+++|++||.|. .+.|. +|||||+|.+.++|.+||+.+ +..|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~--~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--QINIK------NAFGFIQFDNPQSVRDAIECESQEMN 70 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC--EEEEE------TTEEEEEESCHHHHHHHHHHHTCSSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--EEEEe------CCEEEEEECCHHHHHHHHHHcCCCee
Confidence 4689999999998 999999999999999999 77773 789999999999999999964 6554
No 132
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=104.41 Aligned_cols=61 Identities=31% Similarity=0.652 Sum_probs=53.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-----CCccEEEEEeCCHHHHHHHHHhC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-----VGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-----~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
..++|||+|||+++++++|+++|++||.|. +.++.++. ..||||||+|.+.++|++||+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV---VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC---EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 568999999999999999999999999997 44544443 44899999999999999999876
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.42 E-value=4.2e-13 Score=99.27 Aligned_cols=60 Identities=25% Similarity=0.506 Sum_probs=53.7
Q ss_pred cceEEEEcCCCC-CCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~-~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+||++ ++++++|+++|++||.|. .+.|. +|||||+|.+.++|.+||+.+ +..|
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~--~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--QINIK------NAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEE--EEEEC------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--EEEEe------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 578999999998 999999999999999999 77772 789999999999999999954 6554
No 134
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.41 E-value=2.2e-13 Score=103.89 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=53.9
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+++++++|+++|++||.|. .+.|..+ |||||+|.+.++|++||+.+ +..|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~ 76 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVC--YADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKF 76 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEE--EEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 468999999999999999999999999999 8888665 89999999999999999964 6655
No 135
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.41 E-value=5.2e-13 Score=105.85 Aligned_cols=65 Identities=29% Similarity=0.316 Sum_probs=57.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i~ 234 (234)
...++|||+|||+++++++|+++|++||.|. .++|..+ .+|||||+|.+.++|.+||.. ++..|+
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLR--SVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEE--EEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEE--EEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3578999999999999999999999999999 8888776 589999999999999999986 466653
No 136
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.41 E-value=8.3e-13 Score=99.36 Aligned_cols=60 Identities=27% Similarity=0.407 Sum_probs=53.5
Q ss_pred cceEEEEcCCCCC-CCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~-vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+||+++ +++++|+++|++||.|. .+.| .+|||||+|.+.++|++||+.+ +..|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~--~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~ 87 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVA--GCSV------HKGYAFVQYSNERHARAAVLGENGRVL 87 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCS--EEEE------ETTEEEEECSSSHHHHHHHHHHTTCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeE--EEEE------eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4689999999999 99999999999999999 7877 3789999999999999999664 6554
No 137
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-12 Score=96.90 Aligned_cols=61 Identities=33% Similarity=0.413 Sum_probs=53.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhc--CceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKF--GELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~f--G~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++| |.|. .+.+. +|||||+|.+.++|.+||+.+ +..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~--~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE--RVKKI------RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEE--EEEEC------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceE--EEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 457899999999999999999999999 8887 66553 679999999999999999954 6554
No 138
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.3e-13 Score=97.27 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=54.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .+.|. +|||||+|.+.++|++||+.+ +..|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~ 68 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVI--ECDVV------KDYAFVHMEKEADAKAAIAQLNGKEV 68 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEE--EEEEC------SSCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEE--EEEEE------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999999999 78775 459999999999999999964 6554
No 139
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=2.3e-13 Score=99.66 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=54.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+.+++++|+++|++||.|. .+ ...+..+|||||+|.+.++|.+||+.+ +..|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~--~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 78 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR--LV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 78 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC--CE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE--Ee---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678999999999999999999999999997 55 333445899999999999999999964 5544
No 140
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.40 E-value=9.9e-14 Score=109.99 Aligned_cols=67 Identities=22% Similarity=0.114 Sum_probs=57.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||+++++++|+++|++|| |. .|.|..++. ..+|||||+|.+.++|++||+.++..|+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~--~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~ 111 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQ 111 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CS--EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce--EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEEC
Confidence 4578999999999999999999999999 66 788877654 3389999999999999999966666553
No 141
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.40 E-value=1.6e-13 Score=100.57 Aligned_cols=65 Identities=20% Similarity=0.382 Sum_probs=55.7
Q ss_pred cceEEEEcCCCCCCCHHHHH----HHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~----~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
.+++|||+|||.++++++|+ ++|++||.|. .+.|.. .+..+|||||+|.+.++|.+||+. ++..|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~--~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL--DILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE--EEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE--EEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 57899999999999999999 9999999999 777763 223489999999999999999986 46554
No 142
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.40 E-value=4.8e-13 Score=99.50 Aligned_cols=60 Identities=32% Similarity=0.497 Sum_probs=53.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
..++|||+|||+++++++|+++|++||.|. .+.|. +|||||+|.+.++|++||+. ++..|
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~ 70 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLE--RVKKL------KDYAFIHFDERDGAVKAMEEMNGKDL 70 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEE--EEEEC------SSCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEE------CCEEEEEeCCHHHHHHHHHHHCCCcc
Confidence 568999999999999999999999999999 77775 56999999999999999996 46554
No 143
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=6.1e-13 Score=95.40 Aligned_cols=62 Identities=23% Similarity=0.439 Sum_probs=54.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhc----C-------ceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKF----G-------ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~f----G-------~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
..++|||+|||+++++++|+++|++| | .|. .+.+..+ +|||||+|.+.++|.+||..++..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~--~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--AVQINQD----KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--EEEECSS----SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce--EEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 57899999999999999999999999 8 888 7777653 7899999999999999994457655
No 144
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=4.7e-13 Score=106.29 Aligned_cols=61 Identities=23% Similarity=0.427 Sum_probs=56.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 228 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a 228 (234)
+.++|||+|||+++++++|+++|+.||.|. .+.|..++.++ +|||||+|.+.++|.+||+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVT--DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEE--EEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 468999999999999999999999999999 89988876544 89999999999999999985
No 145
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=6.5e-13 Score=97.24 Aligned_cols=65 Identities=14% Similarity=0.314 Sum_probs=55.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceE-EEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV-VIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v-~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i~ 234 (234)
..++|||+|||+++++++|+++|++||.|. .+ .|..++.++ .|||+|.+.++|++||+.+ +..|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~~~~i~~~~~~~--~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVE--SCEQVNTDSETA--VVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEE--EEEEECCSSSSE--EEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeE--EEEEeecCCCCC--EEEEEECCHHHHHHHHHHhCCCEEC
Confidence 568999999999999999999999999999 78 477765444 4999999999999999854 66653
No 146
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=4.9e-13 Score=111.76 Aligned_cols=67 Identities=19% Similarity=0.441 Sum_probs=60.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i~ 234 (234)
..++|||+||++.+++++|+++|++||.|. .++|..++++++|||||+|.+.++|.+||+.+ +..|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNIL--SCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeE--EEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 456899999999999999999999999999 89998887777999999999999999999874 76653
No 147
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.39 E-value=7.4e-13 Score=110.03 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=59.3
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC-CccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV-GICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~-~rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. .|+|..+... .+|||||+|.+.++|++||..+++.|
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~ 174 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVL--NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 174 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEE--EEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEE
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEE--EEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeE
Confidence 3578999999999999999999999999999 8888876543 38999999999999999999876655
No 148
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.39 E-value=1.3e-12 Score=104.19 Aligned_cols=62 Identities=18% Similarity=0.330 Sum_probs=56.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC----CccEEEEEeCCHHHHHHHHHhC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV----GICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~----~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
+.++|||+|||+++++++|+++|++||.|. .+.|..++.+ .+|||||+|.+.++|++||+.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 67 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVY--EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL 67 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 578999999999999999999999999999 8888877655 3899999999999999999865
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.38 E-value=1e-12 Score=106.92 Aligned_cols=67 Identities=21% Similarity=0.414 Sum_probs=59.8
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
..++|||+|||.++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||..++..|+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~ 171 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN 171 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEET
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeE--EEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEEC
Confidence 458999999999999999999999999999 89888876544 89999999999999999988776553
No 150
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.8e-13 Score=97.50 Aligned_cols=61 Identities=26% Similarity=0.423 Sum_probs=52.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCc-eeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-C-ccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGE-LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-I-LMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~-I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~-~~i 233 (234)
..++|||+|||+++++++|+++|++||. |. .+.+. .+|||||+|.+.++|++||+.+ + +.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~--~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLA--GQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCS--SCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceE--EEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 5689999999999999999999999999 55 55553 3789999999999999999865 5 544
No 151
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.2e-13 Score=103.04 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=54.1
Q ss_pred cceEEEE--cCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYV--RNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV--~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++||| |||++++++++|+++|++||.|. .|.|.. +||||||+|.+.++|++|++.+ |..|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~--~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--ALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE--EEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeE--EEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678999 77999999999999999999998 776653 4899999999999999999986 6543
No 152
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.6e-13 Score=99.22 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=51.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHH
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 227 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~ 227 (234)
..++|||+|||+++++++|+++|++||.|. .+.|..+ .||||||+|.+.++|++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~---~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVM--DVFIPKP---FRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCC--EEECCSS---CCSCCEEECSCHHHHHHTTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCee--EEEEecC---CCCEEEEEECCHHHHHHHhc
Confidence 468999999999999999999999999999 8888764 58999999999999987543
No 153
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=5.3e-13 Score=98.76 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=52.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+||++++++++|+++|+.|+.+ .++.++.++ +|||||+|.+.++|++||+. +++.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~-----~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRA-----RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 79 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEE-----EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEE-----EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 357899999999999999999999988544 445554333 89999999999999999986 46655
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.38 E-value=1.2e-12 Score=103.39 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=57.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
.++|||+|||.++++++|+++|+.||.|. .+.+..++.++ +|||||+|.+.++|.+||+. ++..|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 69 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIE--SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 69 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeE--EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 47899999999999999999999999999 89888876444 79999999999999999985 46544
No 155
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=3.9e-14 Score=107.67 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=58.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeece--------EEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEG--------VVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~--------v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|||+++++++|+++|++||.|. . +.|..++.++ +|||||+|.+.++|++||+.+ +..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIK--TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4678999999999999999999999999998 6 7777765444 899999999999999999864 6554
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.4e-12 Score=94.65 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=53.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|| ++++++|+++|++||.|. .|.|. ..+|||||+|.+.++|.+||..+ +..|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~--~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 74 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII--DLSMD----PPRNCAFVTYEKMESADQAVAELNGTQV 74 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEE--EEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEE--EEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 35789999996 899999999999999999 78774 35899999999999999999775 6554
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.37 E-value=9.6e-13 Score=104.39 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=58.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
..++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+|++. ++..|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 70 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPIN--TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV 70 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEE--EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe
Confidence 358999999999999999999999999999 88888876555 79999999999999999974 46554
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.37 E-value=1.8e-12 Score=105.48 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=56.7
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...+|||+||++.+++++|+++|++||.|. .|.|..++ .+|||||+|.+.++|++|++.+ |..|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~--~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVL--KIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEE--EEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEE--EEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 467899999999999999999999999999 88876543 4789999999999999999986 6665
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.37 E-value=1.5e-12 Score=106.76 Aligned_cols=67 Identities=25% Similarity=0.282 Sum_probs=59.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecC-CCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~-~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..+++|||+||++.+++++|+++|++||.|. .|.|..++ +..+|||||+|.+.++|.+||+.+ +..|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l 154 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK--KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 154 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCS--EEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4579999999999999999999999999999 89888776 223899999999999999999965 6555
No 160
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.36 E-value=5.7e-13 Score=104.80 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=54.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeec------eEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSE------GVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~------~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+||++++++++|+.+|++||.|... .+.+. ..+..+|||||+|.+.++|.+||..+ +..|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 46899999999999999999999999998721 13332 23456999999999999999999964 6554
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=1.7e-12 Score=107.23 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=59.6
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC--CccEEEEEeCCHHHHHHHHHh-CCccCC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEV-CILMWH 234 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~--~rGfaFVeF~~~e~a~~Al~a-~~~~i~ 234 (234)
....++|||+|||.++++++|+++|++||.|. .+.|..++.+ .+|||||+|.+.++|.+||+. ++..|+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 96 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIK--SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG 96 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEE--EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEE--EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC
Confidence 34678999999999999999999999999999 8988877644 489999999999999999994 466553
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.35 E-value=1.1e-12 Score=104.06 Aligned_cols=67 Identities=18% Similarity=0.385 Sum_probs=59.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC--CccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~--~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
..++|||+|||..+++++|+++|++||.|. .+.+..++.+ .+|||||+|.+.++|.+||+.+++.|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 154 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTII--DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFK 154 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCS--EEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSS
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEE--EEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeC
Confidence 467999999999999999999999999999 8888877544 489999999999999999996666653
No 163
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.34 E-value=1.9e-12 Score=120.20 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=59.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i~ 234 (234)
..++|||+||++.+++.+|+.+|++||.|. .|.|+.++.++ +|||||+|.+.+.|.+||..+ ++.|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIK--RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCee--EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 568999999999999999999999999999 89888876554 899999999999999999775 66653
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2e-12 Score=102.06 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=55.8
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC-CccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 168 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV-GICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 168 ~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~-~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
++|||+|||.++++++|+++|++||.|. .+.|..++.. .+|||||+|.+.++|.+||+. ++..|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIA--NIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI 66 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEE--EEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeE--EEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 5899999999999999999999999999 8988877643 489999999999999999955 46544
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.34 E-value=4.7e-12 Score=99.83 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=58.7
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||..+++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||..+ +..|
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYL--SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEE--EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCee--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 578999999999999999999999999999 88888775544 899999999999999999854 6655
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.1e-11 Score=96.43 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=53.9
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccE-EEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICY-AFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGf-aFVeF~~~e~a~~Al~a~-~~~i 233 (234)
....|||+||++.+++++|+++|++||.|. .|.|..+ .|| |||+|.+.++|.+|++++ |..|
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~--~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQ--RIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEE--EEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEE--EEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 456789999999999999999999999999 7887542 386 999999999999999975 6655
No 167
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.32 E-value=1.3e-12 Score=94.55 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=53.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+++++++|+++|++| .|. .+.|. ..+|||||+|.+.++|++||+.+ +..|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~--~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 65 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLK--YCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSF 65 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCC--CEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeE--EEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 46889999999999999999999999 888 77774 35899999999999999999955 5544
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=3.7e-12 Score=99.90 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=55.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccE-EEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICY-AFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGf-aFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.-.+|||+||++.+++++|+++|++||.|. .|.|..+ .+|| |||+|.+.++|++|++.+ |..|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~--~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVL--KIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEE--EEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEE--EEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 567899999999999999999999999999 7877654 3677 999999999999999886 5543
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.32 E-value=5.2e-12 Score=104.23 Aligned_cols=68 Identities=21% Similarity=0.473 Sum_probs=60.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i~ 234 (234)
...++|||+||+..+++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.+ +..|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 193 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIK--SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG 193 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCee--EEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC
Confidence 3568999999999999999999999999999 89888875544 899999999999999999964 66654
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.31 E-value=2.7e-12 Score=107.42 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=56.1
Q ss_pred cceEEEEcCCC-CCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLP-PSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp-~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.+++|||+||+ +.+++++|+++|++||.|. .|+|+.+ .+|||||+|.+.++|++||+.+ +..|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~--~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~ 67 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE--KVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFM 67 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEE--EEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeE--EEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46899999999 8999999999999999999 8888765 3899999999999999999865 6544
No 171
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.31 E-value=2.2e-12 Score=101.00 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=51.5
Q ss_pred eEEEEcCC----CCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCC----H-HH---HHHHHH
Q 026738 168 KSVYVRNL----PPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFED----M-TG---VRNAVE 227 (234)
Q Consensus 168 ~~vfV~nL----p~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~----~-e~---a~~Al~ 227 (234)
+.|||+|| ++.+++.+|+++|+.||.|. .+.+..|+.+| +|||||+|.+ . ++ |.+||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~--~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEIS--HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCS--EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 99999999999999999999 89999999987 8999999996 2 22 778877
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.31 E-value=9.9e-12 Score=98.04 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=58.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||..+++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+|++.+ +..|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 155 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRII--TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 155 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEe--EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc
Confidence 467899999999999999999999999999 88888776444 899999999999999999964 6655
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=9.5e-12 Score=99.06 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=57.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC-CccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV-GICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~-~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||..+++++|+++|++||.|. .+.+..+... .+|||||+|.+.++|.+||+.+ +..|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIE--ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEE--EEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 567899999999999999999999999999 8888776542 3899999999999999999775 5443
No 174
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.30 E-value=3.7e-12 Score=101.47 Aligned_cols=66 Identities=20% Similarity=0.377 Sum_probs=58.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccCC
Q 026738 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMWH 234 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i~ 234 (234)
.++|||+|||..+++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+|++. ++..|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLK--AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEE--EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCce--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 67899999999999999999999999999 89888875444 89999999999999999996 466553
No 175
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=4.1e-12 Score=110.30 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=59.0
Q ss_pred ccccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 163 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 163 ~~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
.....++|||+|||+++++++|+++|+.||.|. .|.|..+..+++|||||+|.+.++|.+||+.++..|
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 105 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPII--HVDVADSLKKNFRFARIEFARYDGALAAITKTHKVV 105 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEE--EEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEe
Confidence 345689999999999999999999999999999 899988876679999999999999999997666655
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.29 E-value=3.1e-12 Score=107.11 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=57.9
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCce--eeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGEL--SSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I--~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.+++|||+|||+.+++++|+++|++||.| . .+++..+++..+|||||+|.+.++|.+||..+ +..|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~--~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPT--SVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCS--EEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceE--EEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 46789999999999999999999999999 6 78887776545799999999999999999876 5554
No 177
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.28 E-value=1.5e-11 Score=100.20 Aligned_cols=67 Identities=19% Similarity=0.392 Sum_probs=59.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+||+..+++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+. ++..|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 181 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLK--AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL 181 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEE--EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3578999999999999999999999999999 89888875444 89999999999999999996 46654
No 178
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.27 E-value=1.4e-11 Score=97.61 Aligned_cols=66 Identities=23% Similarity=0.387 Sum_probs=58.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||..+++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+|++.+ +..|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIV--QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEE--EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 457999999999999999999999999999 88888876444 799999999999999999954 6655
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.27 E-value=4.2e-11 Score=103.37 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=57.3
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 164 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 164 ~~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
....++|||+||+..+++++|+++|++||.|. .++|..++ +|||||+|.+.++|.+||+.+ +..|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~--~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~ 269 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFK--EVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKI 269 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE--EEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEe
Confidence 34578999999999999999999999999999 88887643 689999999999999999976 6554
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.26 E-value=1.2e-11 Score=95.27 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=53.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+|| ++++++|+++|++||.|. .|.|. ..+|||||+|.+.++|.+||+.+ +..|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~--~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~ 98 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII--DLSMD----PPRNCAFVTYEKMESADQAVAELNGTQV 98 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCS--CEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEE--EEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 35789999996 799999999999999999 78775 35899999999999999999764 6655
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.25 E-value=1.3e-11 Score=106.60 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=56.9
Q ss_pred ccceEEEEcCCCCCCCHHHHH----HHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~----~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++|||+||++++++++|+ ++|++||.|. .|.|.. .+..||||||+|.+.++|.+||+.+ +..|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~--~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQIL--DILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeE--EEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 357899999999999999977 8999999999 787765 3456899999999999999999665 6554
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.24 E-value=2e-11 Score=102.96 Aligned_cols=64 Identities=22% Similarity=0.180 Sum_probs=57.1
Q ss_pred ccceEEEEcCCCC-CCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~-~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+|||+ ++++++|+++|++||.|. .|.|..++ +|||||+|.+.++|++||+. ++..|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~--~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ--RVKILFNK---KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEE--EEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeE--EEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 3578999999999 999999999999999999 89888764 89999999999999999974 46554
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.21 E-value=1.4e-11 Score=100.96 Aligned_cols=63 Identities=22% Similarity=0.183 Sum_probs=56.1
Q ss_pred cceEEEEcCCCC-CCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 166 EIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~-~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
.+++|||+|||. ++++++|+++|++||.|. .+.|..++ +|||||+|.+.++|.+||+. ++..|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~--~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQ--RVKILFNK---KENALVQMADGNQAQLAMSHLNGHKL 66 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCS--EEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEE--EEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCee
Confidence 368999999999 999999999999999999 88887764 78999999999999999984 46555
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.21 E-value=6.2e-12 Score=100.77 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=54.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEe-ecCCCCccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIR-SRKDVGICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~-~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
...++|||+|||.++++++|+++|..||.+. .+.++ ...+..+|||||+|.+.++|.+||+.++..|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~--~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~ 78 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKN--DLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKV 78 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHH--TCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcc--eEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEe
Confidence 4689999999999999999999999999887 42222 2223458999999999999999997666655
No 185
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.20 E-value=6e-12 Score=102.49 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=50.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCc-----------eeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGE-----------LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~-----------I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
..++|||+|||+++++++|+++|++||. |. .+.+ +..+|||||+|.+.++|++||..++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~--~~~~----~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--AVQI----NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEE--EEEE----ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceE--EeEe----cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 4689999999999999999999999953 33 3333 2348999999999999999995556654
No 186
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=4.3e-11 Score=88.74 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=47.7
Q ss_pred ceEEEEcCCCCCCCHHH----HHHHHhhc-CceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 167 IKSVYVRNLPPSVSESE----IAEEFKKF-GELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~----L~~~F~~f-G~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.+.|||+||+++++.++ |+++|++| |.|. .| ++ |||||.|.+.++|++|++.+ |..|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl--~V-------tg-G~AfV~F~~~esA~~A~~~l~G~~l 71 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL--SI-------TG-CSAILRFINQDSAERAQKRMENEDV 71 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE--EC-------CT-TCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE--EE-------ec-CEEEEEECCHHHHHHHHHHhcCCcc
Confidence 34599999999999887 55899999 4998 55 23 99999999999999999876 6544
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.19 E-value=2.6e-11 Score=104.31 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=55.9
Q ss_pred ccceEEEEcCCCCCC---------CHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 165 EEIKSVYVRNLPPSV---------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~v---------t~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
...++||||||+..+ ++++|+.+|++||.|. .|.|+. .||||||+|.+.++|+.|++++ +..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~--~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID--RIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE--EEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEE--EEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 467899999999998 7999999999999999 888875 3899999999999999999887 5444
No 188
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.17 E-value=4.8e-11 Score=94.97 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=51.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhc----C-------ceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKF----G-------ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~f----G-------~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
+.++|||+|||.++++++|+++|++| | .|. .+.+.. .+|||||+|.+.++|.+||..+++.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~--~~~~~~----~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--AVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--EEEEET----TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCcee--eeEecC----CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 57899999999999999999999999 5 454 444432 48999999999999999995556654
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.16 E-value=3e-11 Score=96.73 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=54.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||..+++++|+++|++||.|. .+ ...+..+|||||+|.+.++|.+||+.+ +..|
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~--~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIR--LV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEE--EE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEE--Ee---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 568999999999999999999999999987 44 444456999999999999999999964 5554
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.15 E-value=7.1e-11 Score=101.57 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=55.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh-CCccC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV-CILMW 233 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a-~~~~i 233 (234)
...++|||+|||+++++++|+++|+.||.|. .|.|.. .+|||||+|.+.++|.+||.. ++..|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~----~kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPS--EVFINR----DRGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCS--EEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--EEEEeC----CCcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 3578999999999999999999999999999 788854 378999999999999999984 46654
No 191
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.14 E-value=1.3e-10 Score=87.54 Aligned_cols=66 Identities=27% Similarity=0.270 Sum_probs=54.5
Q ss_pred cceEEEEcCCCC-----CCCHHHHHHHHhhcCceeeceEEEeecCC---CCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPP-----SVSESEIAEEFKKFGELSSEGVVIRSRKD---VGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~-----~vt~~~L~~~F~~fG~I~~~~v~i~~~~~---~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.++.|+|+||-. +-.+++|+++|++||.|. .+.|..++. .++|||||+|.+.++|.+|++.+ |..|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~--~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVG--KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEE--EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEE--EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 467999999963 236899999999999999 888887653 34899999999999999999876 6544
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.13 E-value=1.5e-10 Score=99.88 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=57.7
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC--ccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~--rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||+.+++++|+++|+.||.|. .+.+..++.++ +|||||+|.+.++|.+||+.+ +..|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLE--RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCee--EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 457999999999999999999999999999 88888776554 899999999999999999554 6544
No 193
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.12 E-value=6.7e-11 Score=106.73 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=53.3
Q ss_pred ccceEEEEcC--CCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-Cc
Q 026738 165 EEIKSVYVRN--LPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-IL 231 (234)
Q Consensus 165 ~~~~~vfV~n--Lp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~ 231 (234)
..+++|||+| |++.+++++|+++|++||.|. .|.+.. +||||||+|.+.++|++||+++ |.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~--~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--ALLMPP----NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE--EEECCT----TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE--EEEEeC----CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3578999999 588999999999999999998 666532 6899999999999999999987 54
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2.8e-10 Score=85.97 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=52.4
Q ss_pred ccceEEEEcCCCCCCC-----------HHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-Ccc
Q 026738 165 EEIKSVYVRNLPPSVS-----------ESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILM 232 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt-----------~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~ 232 (234)
...+.|+|+||-.... +++|+++|++||.|. .+.| .++ ..+|||||+|.+.++|.+||+.+ +..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~--~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIR--KLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCS--EEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEe--EEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3578999999944432 579999999999999 7766 443 36999999999999999999876 554
Q ss_pred C
Q 026738 233 W 233 (234)
Q Consensus 233 i 233 (234)
|
T Consensus 89 ~ 89 (112)
T 2dit_A 89 F 89 (112)
T ss_dssp E
T ss_pred E
Confidence 4
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.10 E-value=8e-11 Score=102.06 Aligned_cols=68 Identities=24% Similarity=0.440 Sum_probs=58.5
Q ss_pred ccceEEEEcCCCCC-CCHHHHHHHHhhcCceeeceEEEeecCC---CCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKD---VGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~-vt~~~L~~~F~~fG~I~~~~v~i~~~~~---~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...++|||+|||.. +++++|+++|++||.|. .+.|..+.. ..+|||||+|.+.++|.+||..++..|+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~--~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~ 279 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIE--KINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLG 279 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE--EEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEET
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCee--EEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEEC
Confidence 35689999999999 99999999999999999 888887653 3489999999999999999933476553
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.10 E-value=1.9e-10 Score=98.90 Aligned_cols=62 Identities=29% Similarity=0.468 Sum_probs=55.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
.+++|||+||+..+++++|+++|+.||.|. .+.|..+.. ..+|||||+|.+.++|.+||..+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVE--KAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeE--EEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 467899999999999999999999999999 888877742 23899999999999999999885
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.08 E-value=1.9e-10 Score=94.07 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=56.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcC-ceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG-~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i~ 234 (234)
..++|||+||+..+++++|+++|++|| .|. .+.|..+ .+|||||+|.+.++|.+||..+ +..|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~--~v~i~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVK--GFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCC--EEEESST---TSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCce--EEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 468999999999999999999999999 998 7887553 3799999999999999999954 66553
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.07 E-value=2.9e-10 Score=95.80 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=56.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcC-ceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccCC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG-~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i~ 234 (234)
..++|||+||+..+++++|+++|++|| .|. .+.|..+ .+|||||+|.+.++|.+||+.+ +..|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~--~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVK--GFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEE--EEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCee--EEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 468999999999999999999999999 998 7887553 4789999999999999999954 66553
No 199
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.07 E-value=2.1e-10 Score=98.99 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=57.4
Q ss_pred cceEEEEcCCCCCC-CHHHHHHHHhhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPSV-SESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~v-t~~~L~~~F~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
..++|||+|||..+ ++++|+++|+.||.|. .+.|..+.. ..+|||||+|.+.++|.+||..+ +..|
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPT--FCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCS--EEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeE--EEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 56899999999995 9999999999999999 888877653 23899999999999999999964 6655
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.6e-09 Score=79.05 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=47.6
Q ss_pred ceEEEEcCCC-------CCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC
Q 026738 167 IKSVYVRNLP-------PSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 167 ~~~vfV~nLp-------~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
..+|-|.-.. ..+++++|+++|++||.|. .|.|.. ..||||||+|.+.++|.+||+..
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~--~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~ 74 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVL--NLVLSS---KKPGTAVVEFATVKAAELAVQNE 74 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEE--EEEEES---SSSSEEEEEESCHHHHHHHHHTC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEE--EEEEcc---CCCCEEEEEECCHHHHHHHHHhc
Confidence 4456565433 4589999999999999999 788773 46899999999999999999874
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.90 E-value=1.8e-09 Score=81.09 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=53.0
Q ss_pred cceEEEEcCC--CCCCC--------HHHHHHHHhhcCceeeceEEEeecCC----CCccEEEEEeCCHHHHHHHHHhC-C
Q 026738 166 EIKSVYVRNL--PPSVS--------ESEIAEEFKKFGELSSEGVVIRSRKD----VGICYAFVEFEDMTGVRNAVEVC-I 230 (234)
Q Consensus 166 ~~~~vfV~nL--p~~vt--------~~~L~~~F~~fG~I~~~~v~i~~~~~----~~rGfaFVeF~~~e~a~~Al~a~-~ 230 (234)
.++.|.++|+ +..+. .++|+++|++||.|. .+.|.+++. .++||+||+|.+.++|.+|++++ |
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~--~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVK--SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEE--EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEE--EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4578899998 33333 368999999999999 898887654 35899999999999999999886 5
Q ss_pred ccC
Q 026738 231 LMW 233 (234)
Q Consensus 231 ~~i 233 (234)
..|
T Consensus 82 ~~f 84 (105)
T 3v4m_A 82 RKF 84 (105)
T ss_dssp CEE
T ss_pred CEe
Confidence 544
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.87 E-value=6.9e-10 Score=83.24 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=48.0
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCceeeceEEEeecCC-CCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 172 VRNLPPSVSESEIAEEF------------KKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 172 V~nLp~~vt~~~L~~~F------------~~fG~I~~~~v~i~~~~~-~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
+.||++.+++++|++.| ++||.|. .+.|..++. .++|||||+|.+.++|.+|++.+ |..|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~--~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE--EMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE--EEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceE--EEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 55677777777777666 9999999 888877654 34999999999999999999875 6544
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=7.9e-09 Score=79.88 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=55.8
Q ss_pred ccccceEEEEcCCCCC-CCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCC-HHHHHHHHHhC---CccC
Q 026738 163 DEEEIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFED-MTGVRNAVEVC---ILMW 233 (234)
Q Consensus 163 ~~~~~~~vfV~nLp~~-vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~-~e~a~~Al~a~---~~~i 233 (234)
....++.|||+||+.. ++.++|+++|++||.|. .|.+..+. -.|||.|.+ ...|..|++.. +++|
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~--~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIK--WIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEE--EEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEE--EEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 3457899999999999 99999999999999999 88886653 379999999 88899998875 5554
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.79 E-value=6.7e-09 Score=79.79 Aligned_cols=66 Identities=29% Similarity=0.355 Sum_probs=52.9
Q ss_pred cceEEEEcCCCCC-----CCHHHHHHHHhhcCceeeceEEEeecCC----C--CccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 166 EIKSVYVRNLPPS-----VSESEIAEEFKKFGELSSEGVVIRSRKD----V--GICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~-----vt~~~L~~~F~~fG~I~~~~v~i~~~~~----~--~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.++.|+++|+-.. --+++|+++|++||.|. .|.|..++. + ++||+||+|.+.++|.+|++++ |..|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~--~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN--RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEE--EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEe--EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 5789999998321 23589999999999999 888877643 2 3799999999999999999986 5443
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.56 E-value=5.9e-08 Score=74.06 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=49.4
Q ss_pred ceEEEEcCCCCCCC----------HHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 167 IKSVYVRNLPPSVS----------ESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 167 ~~~vfV~nLp~~vt----------~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
++.|.++|+=..-. +++|+++|++||.|. .+.|.++ +++|||||+|.+.++|.+||+.+ |..|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~--~v~i~~~--~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVI--HIYVDKN--SAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCS--EEEECTT--CTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEE--EEEEecC--CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 56788888733221 357899999999999 7877554 36999999999999999999886 6544
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=7.1e-06 Score=60.05 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=46.1
Q ss_pred ceEEEEcCCCC----CCCH----HHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 167 IKSVYVRNLPP----SVSE----SEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 167 ~~~vfV~nLp~----~vt~----~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
..+|+|..++. +.-. .+|.+.|.+||.|. .+++..++ +||+|.+.++|.+||+.+|..|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi--~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~ 74 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVI--LIRFVEDK------MWVTFLEGSSALNVLSLNGKELL 74 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEE--EEEECSSS------EEEEESSHHHHHHGGGGTTCEET
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeE--EEEEecCC------EEEEECChHHHHHHHhcCCeEeC
Confidence 34677766552 2222 67999999999998 78887753 89999999999999996687664
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.94 E-value=1.2e-05 Score=66.96 Aligned_cols=52 Identities=31% Similarity=0.396 Sum_probs=42.4
Q ss_pred CHHHHHHHHhhcCceeeceEEEeecCC------CCccEEEEEeCCHHHHHHHHHhC-CccC
Q 026738 180 SESEIAEEFKKFGELSSEGVVIRSRKD------VGICYAFVEFEDMTGVRNAVEVC-ILMW 233 (234)
Q Consensus 180 t~~~L~~~F~~fG~I~~~~v~i~~~~~------~~rGfaFVeF~~~e~a~~Al~a~-~~~i 233 (234)
.+++|++.|++||.|. .+.|..+.. .++||+||+|.+.++|.+||+.+ |-.+
T Consensus 142 ~~~dl~~e~~~~G~v~--~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVN--RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp HHHHHHHHHTTTSCEE--EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHccCCeE--EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 4578999999999999 787764432 34899999999999999999987 5443
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=1.9e-05 Score=58.20 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=48.2
Q ss_pred cceEEEEcCCCCC------CCH---HHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 166 EIKSVYVRNLPPS------VSE---SEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 166 ~~~~vfV~nLp~~------vt~---~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...+|+|..++.. ..+ .+|.+.|.+||.|. .+++..++ +||+|.+.++|.+||+.+|..|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi--lvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV--LVRINQGQ------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS--EEEEETTE------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE--EEEEecCc------EEEEEcChHHHHHHHhcCCeeeC
Confidence 3467888877643 221 56899999999998 78888764 89999999999999996677664
No 209
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.29 E-value=0.00091 Score=49.37 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=45.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q 026738 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 228 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a 228 (234)
.+-++| +.|......||.++|+.||.|. |+++.|. -|||.|.+.+.|..|+..
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidDT-----sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT-----SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEETT-----EEEEECSCHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcCC-----eEEEEecCHHHHHHHHHh
Confidence 345666 9999999999999999999775 8888875 799999999999998874
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0019 Score=48.69 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=52.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhc-----CceeeceEEEeecCCCCccEEEEEeCCHHHHHHHH-HhCCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKF-----GELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV-EVCILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~f-----G~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al-~a~~~~i 233 (234)
..++|-+-|||.++++..++.++..+ |.|. .|.++.| -|-|+|+|.|...|-+|. ..+|..|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~--KI~L~pD----H~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIR--KILLVSD----FNGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCS--EEEEETT----TTEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCcccee--EEEEecC----CCceEEEEccchhhHHHHhhcCCeee
Confidence 46778888999999999999999999 9998 8888876 457999999998887765 5557665
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87 E-value=0.0054 Score=45.62 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=47.9
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhh-----cCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCccC
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKK-----FGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 233 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~-----fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i 233 (234)
-+++|.|.|||..+.++.|+-+|++ -|.|. .+.... +-|+|+|.+...+++.|+...|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~--~v~~~~------~~AvItF~d~~va~rVL~k~~H~L 71 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVL--SWQRLG------CGGVLTFREPADAERVLAQADHEL 71 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEE--EEEEET------TEEEEEESSHHHHHHHHTCSCCBS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceee--EEEEcC------CcEEEEEcChHHHHHHhcCCccee
Confidence 4689999999999999999999986 25555 454422 578999999999999998855443
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.86 E-value=0.0014 Score=48.56 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=45.2
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHh
Q 026738 168 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 228 (234)
Q Consensus 168 ~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a 228 (234)
+-++| +.|......+|.++|+.||.|. |.++.|. -|||.|.+.+.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidDT-----sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT-----SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEETT-----EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcCC-----eEEEEecCHHHHHHHHHh
Confidence 44566 9999999999999999999774 8888875 799999999999998884
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.77 E-value=0.004 Score=47.57 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=50.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCccCC
Q 026738 165 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMWH 234 (234)
Q Consensus 165 ~~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~i~ 234 (234)
...+.|-|-+.+... ...+-+.|++||.|. .... ..+.++-.|.|.+..+|++||..+|.+|+
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv--~~~~----~~~~NWihI~Y~s~~~A~rAL~kNG~ii~ 84 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNIL--KHVM----SNTGNWMHIRYQSKLQARKALSKDGRIFG 84 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEE--EEEE----CSSSSEEEEEESSHHHHHHHHTTTTCEET
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEE--Eecc----CCCCCeEEEEeCCHHHHHHHHHhCCeEec
Confidence 346778888888875 556778899999998 4443 23567999999999999999999987764
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.22 E-value=0.0027 Score=59.10 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=44.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCc
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 231 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~ 231 (234)
..++|||. .+..+++.+|.+.|++||.|. .+....++ ..|+.|+|.+.+++..++....+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~--~~~~~~~~---g~~~~vef~~~~~~~~~~~~~~~ 111 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPIN--NHFFYESF---GLYAVVEFCQKESIGSLQNGTHT 111 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCC--CEEEECSS---SEEEEEECC---CCHHHHSSCCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcc--eEEEEccC---CeEEEEEeCCHHHHHHHHhccCC
Confidence 35889997 799999999999999999999 77665543 36999999999999988766543
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.31 E-value=0.01 Score=45.96 Aligned_cols=65 Identities=11% Similarity=0.255 Sum_probs=45.2
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEee------------c--CC-CCccEEEEEeCCHHHHHHHHHhCCcc
Q 026738 168 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRS------------R--KD-VGICYAFVEFEDMTGVRNAVEVCILM 232 (234)
Q Consensus 168 ~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~------------~--~~-~~rGfaFVeF~~~e~a~~Al~a~~~~ 232 (234)
..|-|-+.|...... +-+.|++||.|.. .+.+.. . .. ++.+|-.|.|++..+|++||..+|.+
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE-~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILE-DFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCS-CCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEee-eccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 456666777766655 5567999999983 121110 0 00 24678999999999999999999877
Q ss_pred CC
Q 026738 233 WH 234 (234)
Q Consensus 233 i~ 234 (234)
|+
T Consensus 86 i~ 87 (132)
T 3p3d_A 86 FN 87 (132)
T ss_dssp ET
T ss_pred eC
Confidence 64
No 216
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.19 E-value=0.066 Score=38.79 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=44.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCC----ccEEEEEeCCHHHHHHHHHh
Q 026738 168 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG----ICYAFVEFEDMTGVRNAVEV 228 (234)
Q Consensus 168 ~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~----rGfaFVeF~~~e~a~~Al~a 228 (234)
++|-||+||.+++++++.+.+...+.+. .......+.+. .+-|+|.|.+.+++..-.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d--~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD--YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEE--EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccce--EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 5788999999999999999999887765 54444333221 36799999998887766554
No 217
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.93 E-value=0.7 Score=43.22 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=44.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC
Q 026738 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
...++|+ ++..+...+|.++|+.||.+. |++..+. .+||.|.+.+.+..++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---V~widdt-----~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---ISWIDDT-----SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---EEECSSS-----EEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---EEEEcCC-----eEEEEECCHHHHHHHHHHH
Confidence 3466666 888899999999999999774 6666653 7999999999999888764
No 218
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.66 E-value=2.4 Score=31.31 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=41.7
Q ss_pred ceEEEEcCCCCCC-C----HHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhC
Q 026738 167 IKSVYVRNLPPSV-S----ESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 229 (234)
Q Consensus 167 ~~~vfV~nLp~~v-t----~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~ 229 (234)
.++|+|.||+..+ . ...++.+|..|+.+. ...... +-.-..|.|.+.++|.+|-...
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~--tF~~lk----SFRRirv~F~~~~~A~~AR~~L 66 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDT--TFQYFK----SFKRVRINFSNPLSAADARLRL 66 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC--EEEEET----TTTEEEEECSSTTHHHHHHHTS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc--ceeecC----cceEEEEEeCChHHHHHHHHHh
Confidence 4689999998865 3 256799999999987 444433 2223589999999988886654
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=82.59 E-value=0.94 Score=33.07 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=37.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCC-C---ccEEEEEeCCHHHHHHHHHh
Q 026738 167 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV-G---ICYAFVEFEDMTGVRNAVEV 228 (234)
Q Consensus 167 ~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~-~---rGfaFVeF~~~e~a~~Al~a 228 (234)
+-+|-||+||..+|++++.+.+..+-.+. .......+.+ + -+-|+|.|.+.+++..-.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d--~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHD--YFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEE--ECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccc--eEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 45789999999999998765554432221 1111111111 1 35689999999887765543
No 220
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.21 E-value=32 Score=27.41 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCHHHHHHHH--hhcCceeeceEEEeecCCCCccEEEEEeCC-HHHHHHHHH
Q 026738 179 VSESEIAEEF--KKFGELSSEGVVIRSRKDVGICYAFVEFED-MTGVRNAVE 227 (234)
Q Consensus 179 vt~~~L~~~F--~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~-~e~a~~Al~ 227 (234)
.+..+|++.| ..|..++ +.........+|++.|.|.. ..+...|+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k---v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR---VRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE---EEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce---eEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 4567899977 9999987 44444433348999999987 345555553
No 221
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=38.24 E-value=75 Score=20.07 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=45.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeeceEEEeecCCCCccEEEEEeCCHHHHHHHHHhCCcc
Q 026738 166 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILM 232 (234)
Q Consensus 166 ~~~~vfV~nLp~~vt~~~L~~~F~~fG~I~~~~v~i~~~~~~~rGfaFVeF~~~e~a~~Al~a~~~~ 232 (234)
...++.|.++.-.--...+++.+.+ ..+. .+.+.. ..+-+.|.|.+.+....+|+..|..
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~--~~~v~~----~~~~~~v~~~~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAK--VEKVDL----NEAVVAGNKEDVDKYIKAVEAAGYQ 64 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCE--EEEECS----SEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcE--EEEEEc----cCCEEEEEECCHHHHHHHHHHcCCc
Confidence 3467889999888888999999998 7777 565543 2456778888777788888887753
No 222
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=24.34 E-value=70 Score=24.69 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=9.0
Q ss_pred CccEEEEEeCC
Q 026738 208 GICYAFVEFED 218 (234)
Q Consensus 208 ~rGfaFVeF~~ 218 (234)
.||||||.-++
T Consensus 73 ~KGfGFI~~dd 83 (147)
T 3aqq_A 73 SKGHGFITPAD 83 (147)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEeccCC
Confidence 48999998765
No 223
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=20.91 E-value=1.9e+02 Score=20.67 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHhhcCceeeceEE---EeecCCCC--ccEEEEEeCCHHHHHH
Q 026738 177 PSVSESEIAEEFKKFGELSSEGVV---IRSRKDVG--ICYAFVEFEDMTGVRN 224 (234)
Q Consensus 177 ~~vt~~~L~~~F~~fG~I~~~~v~---i~~~~~~~--rGfaFVeF~~~e~a~~ 224 (234)
.+.+..+|++.+.+.=.+..+.|. ++..-|.| .|||.| |++.+.+.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567888998888654333333443 33444445 577755 677766654
No 224
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=20.34 E-value=68 Score=22.56 Aligned_cols=8 Identities=13% Similarity=0.642 Sum_probs=6.7
Q ss_pred CccEEEEE
Q 026738 208 GICYAFVE 215 (234)
Q Consensus 208 ~rGfaFVe 215 (234)
.||||||+
T Consensus 19 ~KGfGFI~ 26 (90)
T 3ulj_A 19 RMGFGFIS 26 (90)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEeE
Confidence 48999996
Done!