BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026740
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 275 bits (704), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL YILDG
Sbjct: 2 STNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61
Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
DN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACRS+LPE
Sbjct: 62 DNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPE 121
Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
GDF+EVFMDVPL VCEARDPKGLYKLAR GK+KG
Sbjct: 122 GDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKG 155
>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1D6J|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1M7G|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7H|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
Length = 211
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/165 (53%), Positives = 108/165 (65%), Gaps = 15/165 (9%)
Query: 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILD 137
STNI +H +++ + +R +L Q+G IW+TGLS SGKSTLA L Q + R Y LD
Sbjct: 2 STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61
Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-- 195
GDN R GLN+DL F DR ENIRRI EVAKLFAD+ I I ISPYRKDRD R +
Sbjct: 62 GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121
Query: 196 ---------LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
LP F+EV++DVP++V E RDPKGLYK AREG +K
Sbjct: 122 VATPGEETGLP---FVEVYVDVPVEVAEQRDPKGLYKKAREGVIK 163
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 115/172 (66%), Gaps = 8/172 (4%)
Query: 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALS 123
+N QN + ++TN+ + + V + R Q++ +G C +W+TGLSG+GK+T++ AL
Sbjct: 14 SNNAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73
Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
+ L G Y LDGDN R GLN++L F EDR EN+RRI EVAKLFADAG++CI IS
Sbjct: 74 EYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFIS 133
Query: 184 PYRKDRDACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
PY +DR+ R + EG F EVF+D PL VCE RD KGLYK AR G++KG
Sbjct: 134 PYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG 184
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 110/164 (67%), Gaps = 12/164 (7%)
Query: 78 KSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLT 133
++TN+ + + V + R Q++ +G C IW+TGLSG+GK+T++ AL + L G
Sbjct: 5 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPC 64
Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
Y LDGDN R GLN++L F EDR EN+RRI EVAKLFADAG++CI ISPY +DR+ R
Sbjct: 65 YTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNAR 124
Query: 194 SM-----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
+ LP F EVF+D PL VCE RD KGLYK AR G++KG
Sbjct: 125 QIHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG 165
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 109/163 (66%), Gaps = 12/163 (7%)
Query: 79 STNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLTY 134
+TN+ + + V + R Q++ +G C +W+TGLSG+GK+T++ AL + L G Y
Sbjct: 5 ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 64
Query: 135 ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS 194
LDGDN R GLN++L F EDR EN+RRI EVAKLFADAG++CI ISPY +DR+ R
Sbjct: 65 TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 124
Query: 195 M-----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
+ LP F EVF+D PL VCE RD KGLYK AR G++KG
Sbjct: 125 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG 164
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/139 (56%), Positives = 97/139 (69%), Gaps = 8/139 (5%)
Query: 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
+GC +W+TGLSG+GK+T++ AL + L G Y LDGDN R GLN++L F EDR E
Sbjct: 2 HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----LPEGDFIEVFMDVPLQVC 213
N+RRI EVAKLFADAG++CI ISPY +DR+ R + LP F EVF+D PL VC
Sbjct: 62 NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLP---FFEVFVDAPLHVC 118
Query: 214 EARDPKGLYKLAREGKVKG 232
E RD KGLYK AR G++KG
Sbjct: 119 EQRDVKGLYKKARAGEIKG 137
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 97/137 (70%), Gaps = 8/137 (5%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
+GC +W+TGLSG+GK+T++ AL + L Y LDGDN RHGLNR+L F DR ENI
Sbjct: 21 RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENI 80
Query: 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----LPEGDFIEVFMDVPLQVCEA 215
RRI EVAKLFADAG++CI ISP+ KDR+ R + LP F E+F+D PL +CE+
Sbjct: 81 RRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLP---FFEIFVDAPLNICES 137
Query: 216 RDPKGLYKLAREGKVKG 232
RD KGLYK AR G++KG
Sbjct: 138 RDVKGLYKRARAGEIKG 154
>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|B Chain B, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|C Chain C, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|D Chain D, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
Length = 197
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 94/144 (65%), Gaps = 15/144 (10%)
Query: 100 QKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
Q+G IW+TGLS SGKSTLA L Q + R Y LDGDN R GLN+DL F DR E
Sbjct: 1 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----------LPEGDFIEVFMD 207
NIRRI EVAKLFAD+ I I ISPYRKDRD R + LP F+EV++D
Sbjct: 61 NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLP---FVEVYVD 117
Query: 208 VPLQVCEARDPKGLYKLAREGKVK 231
VP++V E RDPKGLYK AREG +K
Sbjct: 118 VPVEVAEQRDPKGLYKKAREGVIK 141
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 87/134 (64%)
Query: 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
++G +W+TGL +GKST+A L+ L RG+ +LDGD R L+R L F EDR+
Sbjct: 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT 428
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
NI R+G VA + I L+SPYR R+ R+M+ EG FIEVF+D P++VCE RD
Sbjct: 429 NILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488
Query: 219 KGLYKLAREGKVKG 232
KGLYK A+EG +KG
Sbjct: 489 KGLYKKAKEGLIKG 502
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+KG V+W+TGL GSGK+T+A L+ L G +LDGD R ++ F E+R+ +
Sbjct: 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH 70
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARD 217
++RI +A+L A GVI I +SPY++ R+ R ++ E F+E+++ L+ RD
Sbjct: 71 LKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRD 130
Query: 218 PKGLYKLAREGKVK 231
PKGLYK A +G+++
Sbjct: 131 PKGLYKKALKGELE 144
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Query: 99 QQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157
+++G ++ TGLSG+GKSTLA AL+ + + G+ +LDGD R L+ +L F R
Sbjct: 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRD 425
Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEAR 216
N+RRIG VA I I I+PYR+ R R+M+ G F+E+ + P++ CE+R
Sbjct: 426 VNVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESR 485
Query: 217 DPKGLYKLAREGKV 230
D KGLY AR G +
Sbjct: 486 DRKGLYAKARAGLI 499
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+G I++TG SGK +A AL L+ +G + +L GD RH L+ +L F EDR N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDP 218
I+RI VA AG IA I+PY + R R + + G F V + PL+ CE D
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 219 KGLYKLAREGKVKG 232
+G+Y AR G++KG
Sbjct: 515 RGIYAAARRGEIKG 528
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+G I++TG SGK +A AL L+ +G + +L GD RH L+ +L F EDR N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDP 218
I+RI VA AG IA I+PY + R R + + G F V + PL+ CE D
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 219 KGLYKLAREGKVKG 232
+G+Y AR G++KG
Sbjct: 515 RGIYAAARRGEIKG 528
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV 166
+ G+SGSGK+T+A ++ + R + EDR +R + E
Sbjct: 34 VMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93
Query: 167 AKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
ADAGV I + R RD R P DF+ +D P +V + R
Sbjct: 94 MDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLH--LDGPAEVIKGR 141
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
+L +K +I +TG +GSGKST ++ ++ I D + FK +
Sbjct: 130 ELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY------VFKHKK 183
Query: 156 RVENIRRIGEVAKLFADA 173
+ N R +GE K FADA
Sbjct: 184 SIVNQREVGEDTKSFADA 201
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
+L +K +I +TG +GSGKST + ++ I D + FK +
Sbjct: 130 ELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDPIEY------VFKHKK 183
Query: 156 RVENIRRIGEVAKLFADA 173
+ N R +GE K FADA
Sbjct: 184 SIVNQREVGEDTKSFADA 201
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
+L +K +I +TG +GSGKST + ++ I D + FK +
Sbjct: 119 ELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDPIEY------VFKHKK 172
Query: 156 RVENIRRIGEVAKLFADA 173
+ N R +GE K FADA
Sbjct: 173 SIVNQREVGEDTKSFADA 190
>pdb|2EYU|A Chain A, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
pdb|2EYU|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
Length = 261
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
+L +K +I +TG +GSGKST + ++ I D + FK +
Sbjct: 19 ELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDPIEY------VFKHKK 72
Query: 156 RVENIRRIGEVAKLFADA 173
+ N R +GE K FADA
Sbjct: 73 SIVNQREVGEDTKSFADA 90
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWR 129
VI + G SG+GK TL AL+++L+WR
Sbjct: 29 VITVDGPSGAGKGTLCKALAESLNWR 54
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154
+L +K VI + G+ GSGK+T A L++ + RG ++ D R L AE
Sbjct: 93 ELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAE 151
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154
+L +K VI + G+ GSGK+T A L++ + RG ++ D R L AE
Sbjct: 93 ELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAE 151
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 104 VIWITGLSGSGKSTLACALSQALHW 128
VI I G SG+GK TL A+++AL W
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQW 31
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWR 129
VI I G SG+GK TL A+++AL W
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWH 32
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 104 VIWITGLSGSGKSTLACALSQALHW 128
VI I G SG+GK TL A+++AL W
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQW 31
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
+L KNS + QL +K VI I G++G GK+T L+ L G + GD
Sbjct: 140 MLAKKNS---KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196
Query: 142 RHGLNRDLSFKAE 154
R + L AE
Sbjct: 197 RAAASDQLEIWAE 209
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
+L KNS + QL +K VI I G++G GK+T L+ L G + GD
Sbjct: 83 MLAKKNS---KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139
Query: 142 RHGLNRDLSFKAE 154
R + L AE
Sbjct: 140 RAAASDQLEIWAE 152
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 102 GCVIWITGLSGSGKSTLAC-----ALSQALH 127
G + +TG+SGSGKSTL AL+Q LH
Sbjct: 348 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 378
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
+G ++ +TGLSGSGKS+LA ++ G+ Y+
Sbjct: 43 RGKLVVLTGLSGSGKSSLAF---DTIYAEGQRRYV 74
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 102 GCVIWITGLSGSGKSTLAC-----ALSQALH 127
G + +TG+SGSGKSTL AL+Q LH
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
+G ++ +TGLSGSGKS+LA ++ G+ Y+
Sbjct: 43 RGKLVVLTGLSGSGKSSLAF---DTIYAEGQRRYV 74
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDLSFKAEDRVENIRRI 163
I G GSGKSTLA AL++ L LD D N+ +S E + EN R
Sbjct: 7 IVFIGFXGSGKSTLARALAKDLDL-----VFLDSDFLIEQKFNQKVSEIFEQKRENFFRE 61
Query: 164 GE--VAKLFADAGVICIA 179
E A F+ CIA
Sbjct: 62 QEQKXADFFSSCEKACIA 79
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 102 GCVIWITGLSGSGKSTLAC-----ALSQALH 127
G + +TG+SGSGKSTL AL+Q LH
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
+G ++ +TGLSGSGKS+LA ++ G+ Y+
Sbjct: 43 RGKLVVLTGLSGSGKSSLAF---DTIYAEGQRRYV 74
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
++G G+GK+T+ LS AL RG+ +DGD
Sbjct: 8 VSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL 149
+++K ++ + G+ GSGK+T L++ RG ++ D R G L
Sbjct: 96 IKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQL 147
>pdb|1A7J|A Chain A, Phosphoribulokinase From Rhodobacter Spheroides
Length = 290
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-------DLS 150
+ +K +I +TG SG+G ST+ Q G ++GD H NR D
Sbjct: 1 MSKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD-AFHRFNRADMKAELDRR 59
Query: 151 FKAEDRV-----ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIE 203
+ A D + E+ ++F + G + D +A R+ + G+F +
Sbjct: 60 YAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTD 117
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
V+ +TG+SGSGKS++A L + YI+D D+ H
Sbjct: 77 VLGLTGISGSGKSSVAQRL------KNLGAYIIDSDHLGH 110
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRG 130
V+ I GLS SGK+TLA LSQ L +G
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQG 50
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
++ + G+GKST+A L+ A G T I+DGD
Sbjct: 84 SIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 101 FLVGLQGSGKTTTAAKL--ALYYKGK 124
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 101 FLVGLQGSGKTTTAAKL--ALYYKGK 124
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+K VI G +GSGK+T L+ L G I D R G L E+
Sbjct: 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLE-------EH 179
Query: 160 IRRIG 164
+RIG
Sbjct: 180 AKRIG 184
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126
+N++D D + L G + +TG+SGSGKSTL +SQAL
Sbjct: 510 RNNLDNLDVRFPL---GVMTSVTGVSGSGKSTL---VSQAL 544
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
Q LQ ++ TG G GK++++CA + L +GK ++ D
Sbjct: 2 QFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227
+ IS D DA R+ L EGD + DV Q E + K ARE
Sbjct: 41 LGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTARE 90
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137
++ +G G GK+T + A++ L +GK T ++D
Sbjct: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+K VI G +GSGK+T L+ L G I D R G L E+
Sbjct: 127 EKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLE-------EH 179
Query: 160 IRRIG 164
+RIG
Sbjct: 180 AKRIG 184
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
++G G+GK+T+ LS AL G+ +DGD
Sbjct: 8 VSGKGGTGKTTVTANLSVALGEXGRKVLAVDGD 40
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
+ + G+SGSGKS +A ++ LH LDGD
Sbjct: 10 IYVLXGVSGSGKSAVASEVAHQLH-----AAFLDGD 40
>pdb|1MS5|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
pdb|1MS5|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
Length = 648
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G G+S C+ AL W GKL N R R L +++ D
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSD 272
>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
Lactose (Michaelis Complex)
pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
(Michaelis Complex)
Length = 648
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G G+S C+ AL W GKL N R R L +++ D
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSD 272
>pdb|1MR5|A Chain A, Orthorhombic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS0|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS0|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS1|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS1|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS3|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS3|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS8|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS8|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS9|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|1MS9|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|2AH2|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With
2,3-Difluorosialic Acid (Covalent Intermediate)
pdb|3B69|A Chain A, T Cruzi Trans-Sialidase Complex With Benzoylated Nana
Derivative
pdb|3OPZ|A Chain A, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|B Chain B, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|C Chain C, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 648
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G G+S C+ AL W GKL N R R L +++ D
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSD 272
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
D L ++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 20 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 67
>pdb|3PJQ|A Chain A, Trypanosoma Cruzi Trans-Sialidase-Like Inactive Isoform
(Including The Natural Mutation Tyr342his) In Complex
With Lactose
Length = 648
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
G G+S C+ AL W GKL N R R L +++ D
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSD 272
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
D L ++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 73
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLA 119
D L ++G VI I G SGSGKSTL
Sbjct: 22 DNINLSIKQGEVIGIVGRSGSGKSTLT 48
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
D L ++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 20 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 67
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
D L ++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 73
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLA 119
D L ++G VI I G SGSGKSTL
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTLT 52
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
K D+ +++L + K + +G G GKST+ L+ +GK ILD D
Sbjct: 2 QKRVTDEEIKERLGKIKSRIAVXSGKGGVGKSTVTALLAVHYARQGKKVGILDAD 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,344,412
Number of Sequences: 62578
Number of extensions: 241586
Number of successful extensions: 899
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 80
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)