Query 026740
Match_columns 234
No_of_seqs 380 out of 2559
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 12:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0529 CysC Adenylylsulfate k 100.0 1.5E-27 3.2E-32 188.9 13.9 152 82-233 3-154 (197)
2 KOG0635 Adenosine 5'-phosphosu 99.9 8.4E-27 1.8E-31 180.1 11.8 155 79-233 8-162 (207)
3 COG1126 GlnQ ABC-type polar am 99.9 2.2E-26 4.7E-31 188.0 9.9 135 76-225 2-179 (240)
4 COG1120 FepC ABC-type cobalami 99.9 5E-26 1.1E-30 192.7 6.5 142 76-227 2-183 (258)
5 COG3842 PotA ABC-type spermidi 99.9 1.2E-25 2.5E-30 198.1 7.6 134 75-226 4-180 (352)
6 COG3839 MalK ABC-type sugar tr 99.9 1.9E-25 4.1E-30 195.8 7.3 142 76-227 3-178 (338)
7 COG1125 OpuBA ABC-type proline 99.9 7.1E-25 1.5E-29 182.9 9.3 134 76-225 1-178 (309)
8 COG3638 ABC-type phosphate/pho 99.9 1.7E-24 3.7E-29 178.9 9.9 138 76-226 3-191 (258)
9 COG0410 LivF ABC-type branched 99.9 6E-24 1.3E-28 175.3 9.7 150 75-227 2-181 (237)
10 COG4175 ProV ABC-type proline/ 99.9 1.6E-24 3.5E-29 185.6 6.1 115 34-178 6-120 (386)
11 COG1127 Ttg2A ABC-type transpo 99.9 6.7E-24 1.5E-28 175.8 9.4 139 74-225 6-188 (263)
12 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.1E-23 2.4E-28 177.7 10.9 150 75-227 3-184 (254)
13 COG1136 SalX ABC-type antimicr 99.9 7.7E-24 1.7E-28 176.2 9.2 139 77-227 2-187 (226)
14 COG1116 TauB ABC-type nitrate/ 99.9 5.5E-23 1.2E-27 171.8 11.6 147 76-226 3-174 (248)
15 COG0411 LivG ABC-type branched 99.9 3E-24 6.5E-29 178.4 2.8 143 75-227 3-194 (250)
16 COG1135 AbcC ABC-type metal io 99.9 5.1E-23 1.1E-27 176.1 10.3 138 76-226 1-185 (339)
17 PF01583 APS_kinase: Adenylyls 99.9 2.8E-22 6.1E-27 158.4 12.0 133 101-233 1-133 (156)
18 COG2884 FtsE Predicted ATPase 99.9 6.8E-23 1.5E-27 164.4 7.4 138 76-226 1-181 (223)
19 cd03214 ABC_Iron-Siderophores_ 99.9 1.2E-21 2.7E-26 158.9 12.2 137 78-227 1-142 (180)
20 cd03229 ABC_Class3 This class 99.9 1.2E-22 2.7E-27 164.5 5.8 135 77-227 1-145 (178)
21 cd03216 ABC_Carb_Monos_I This 99.9 3E-22 6.5E-27 160.2 7.7 127 77-227 1-127 (163)
22 cd03228 ABCC_MRP_Like The MRP 99.9 3.9E-22 8.4E-27 160.6 8.4 135 77-227 1-141 (171)
23 COG1131 CcmA ABC-type multidru 99.9 5.7E-22 1.2E-26 172.7 10.0 149 76-227 4-181 (293)
24 TIGR03415 ABC_choXWV_ATP choli 99.9 6.8E-23 1.5E-27 183.9 3.8 171 34-227 2-209 (382)
25 COG4152 ABC-type uncharacteriz 99.9 1.2E-21 2.7E-26 162.7 10.3 149 76-227 2-175 (300)
26 cd03230 ABC_DR_subfamily_A Thi 99.9 1.5E-22 3.3E-27 163.3 4.5 133 78-227 2-140 (173)
27 COG1124 DppF ABC-type dipeptid 99.9 5.9E-22 1.3E-26 164.7 8.0 148 75-225 2-184 (252)
28 COG3845 ABC-type uncharacteriz 99.9 6.8E-22 1.5E-26 177.9 8.6 146 75-226 3-184 (501)
29 COG1118 CysA ABC-type sulfate/ 99.9 3.6E-22 7.7E-27 170.7 6.5 149 76-227 2-182 (345)
30 COG1117 PstB ABC-type phosphat 99.9 1.8E-21 3.9E-26 158.9 10.1 130 74-217 5-184 (253)
31 cd03247 ABCC_cytochrome_bd The 99.9 7.8E-22 1.7E-26 159.8 7.9 134 77-227 1-143 (178)
32 cd03246 ABCC_Protease_Secretio 99.9 4.5E-22 9.7E-27 160.5 6.2 135 77-227 1-141 (173)
33 COG4604 CeuD ABC-type enteroch 99.9 1.3E-21 2.9E-26 157.9 8.7 143 76-226 1-179 (252)
34 COG4555 NatA ABC-type Na+ tran 99.9 1.8E-21 3.9E-26 157.6 9.4 149 76-227 1-178 (245)
35 PRK13537 nodulation ABC transp 99.9 7.7E-22 1.7E-26 172.9 7.8 150 75-227 6-183 (306)
36 COG1129 MglA ABC-type sugar tr 99.9 4.1E-21 8.9E-26 175.3 12.5 148 74-227 6-190 (500)
37 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.1E-21 2.3E-26 163.6 8.0 148 77-227 1-185 (218)
38 TIGR02314 ABC_MetN D-methionin 99.9 8.6E-22 1.9E-26 174.9 7.6 149 76-227 1-185 (343)
39 PRK11650 ugpC glycerol-3-phosp 99.8 8.2E-22 1.8E-26 176.0 6.7 148 76-226 3-178 (356)
40 TIGR00960 3a0501s02 Type II (G 99.8 2.2E-21 4.9E-26 161.5 8.9 148 77-227 2-183 (216)
41 PRK11432 fbpC ferric transport 99.8 9.1E-22 2E-26 175.3 6.7 149 75-226 5-180 (351)
42 TIGR03265 PhnT2 putative 2-ami 99.8 1E-21 2.3E-26 175.1 7.1 150 75-227 3-179 (353)
43 cd03261 ABC_Org_Solvent_Resist 99.8 2.1E-21 4.6E-26 163.7 8.6 148 77-227 1-181 (235)
44 PRK13536 nodulation factor exp 99.8 3.9E-21 8.4E-26 170.6 9.9 150 75-227 40-217 (340)
45 PRK09452 potA putrescine/sperm 99.8 1.5E-21 3.3E-26 175.2 7.1 151 74-227 12-189 (375)
46 TIGR02673 FtsE cell division A 99.8 3.7E-21 8E-26 159.9 8.8 148 77-227 2-182 (214)
47 PRK11629 lolD lipoprotein tran 99.8 2.5E-21 5.5E-26 163.1 7.8 150 75-227 4-190 (233)
48 COG4559 ABC-type hemin transpo 99.8 2.2E-21 4.7E-26 158.3 6.9 78 76-161 1-78 (259)
49 cd03259 ABC_Carb_Solutes_like 99.8 1.1E-20 2.5E-25 156.9 11.4 148 77-227 1-175 (213)
50 cd03258 ABC_MetN_methionine_tr 99.8 5.3E-21 1.1E-25 161.0 9.0 148 77-227 2-185 (233)
51 PRK11153 metN DL-methionine tr 99.8 2.8E-21 6E-26 171.9 7.6 149 76-227 1-185 (343)
52 TIGR02211 LolD_lipo_ex lipopro 99.8 4.6E-21 9.9E-26 160.1 8.4 147 77-226 2-185 (221)
53 PRK09536 btuD corrinoid ABC tr 99.8 1.2E-21 2.5E-26 177.1 4.6 148 76-226 3-183 (402)
54 COG1137 YhbG ABC-type (unclass 99.8 5.8E-22 1.3E-26 160.3 2.3 149 76-227 4-187 (243)
55 cd03265 ABC_DrrA DrrA is the A 99.8 6.3E-21 1.4E-25 159.3 8.5 148 77-227 1-176 (220)
56 PRK10070 glycine betaine trans 99.8 1.3E-21 2.7E-26 176.8 4.5 172 33-227 5-209 (400)
57 cd03292 ABC_FtsE_transporter F 99.8 8.3E-21 1.8E-25 157.7 8.9 148 77-227 1-181 (214)
58 PRK10908 cell division protein 99.8 9E-21 1.9E-25 158.6 8.9 148 77-227 2-182 (222)
59 TIGR01288 nodI ATP-binding ABC 99.8 5.6E-21 1.2E-25 167.2 7.9 149 76-227 4-180 (303)
60 cd03263 ABC_subfamily_A The AB 99.8 8.8E-21 1.9E-25 158.3 8.7 148 77-227 1-178 (220)
61 cd03293 ABC_NrtD_SsuB_transpor 99.8 2E-20 4.4E-25 156.3 10.8 147 77-227 1-176 (220)
62 PRK10584 putative ABC transpor 99.8 7.7E-21 1.7E-25 159.5 8.3 150 75-227 5-191 (228)
63 TIGR03608 L_ocin_972_ABC putat 99.8 7E-21 1.5E-25 157.2 7.8 146 79-227 1-179 (206)
64 PRK10247 putative ABC transpor 99.8 1.3E-20 2.7E-25 158.2 9.3 151 74-227 5-182 (225)
65 cd03266 ABC_NatA_sodium_export 99.8 2.4E-21 5.1E-26 161.5 4.8 148 77-227 2-181 (218)
66 cd03301 ABC_MalK_N The N-termi 99.8 2.7E-20 5.8E-25 154.6 11.1 148 77-227 1-175 (213)
67 cd03224 ABC_TM1139_LivF_branch 99.8 2.9E-20 6.3E-25 155.2 11.3 148 77-227 1-177 (222)
68 TIGR03258 PhnT 2-aminoethylpho 99.8 4.3E-21 9.3E-26 171.6 6.7 149 76-227 5-182 (362)
69 COG4598 HisP ABC-type histidin 99.8 1.6E-20 3.4E-25 150.0 9.0 146 75-223 5-193 (256)
70 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 1.7E-20 3.6E-25 147.2 9.2 115 77-227 1-115 (144)
71 PRK11607 potG putrescine trans 99.8 4.7E-21 1E-25 172.2 6.7 149 74-225 17-192 (377)
72 cd03225 ABC_cobalt_CbiO_domain 99.8 1E-20 2.3E-25 156.9 8.4 146 79-227 2-179 (211)
73 cd03268 ABC_BcrA_bacitracin_re 99.8 1.1E-20 2.4E-25 156.5 8.4 148 77-227 1-171 (208)
74 cd03269 ABC_putative_ATPase Th 99.8 1.7E-20 3.6E-25 155.6 9.3 148 77-227 1-173 (210)
75 TIGR03522 GldA_ABC_ATP gliding 99.8 1.1E-20 2.4E-25 165.2 8.3 149 76-227 2-178 (301)
76 cd03215 ABC_Carb_Monos_II This 99.8 3.3E-21 7.1E-26 156.7 4.5 134 75-227 3-149 (182)
77 PRK13538 cytochrome c biogenes 99.8 1.1E-19 2.5E-24 150.1 13.9 148 77-227 2-174 (204)
78 cd03226 ABC_cobalt_CbiO_domain 99.8 4.7E-20 1E-24 152.5 11.4 147 78-227 1-171 (205)
79 cd03256 ABC_PhnC_transporter A 99.8 4E-20 8.8E-25 156.2 11.3 148 77-227 1-189 (241)
80 cd03213 ABCG_EPDR ABCG transpo 99.8 3.7E-21 8E-26 158.0 4.7 137 76-227 3-156 (194)
81 TIGR03410 urea_trans_UrtE urea 99.8 6.9E-20 1.5E-24 153.9 12.5 148 77-227 1-176 (230)
82 PRK11000 maltose/maltodextrin 99.8 6.5E-21 1.4E-25 171.0 6.7 149 76-227 3-178 (369)
83 PRK13540 cytochrome c biogenes 99.8 1.1E-20 2.4E-25 155.8 7.5 148 77-227 2-172 (200)
84 PRK11248 tauB taurine transpor 99.8 3.1E-20 6.6E-25 158.8 10.4 148 77-227 2-173 (255)
85 cd03217 ABC_FeS_Assembly ABC-t 99.8 8.1E-21 1.8E-25 156.7 6.7 136 77-227 1-149 (200)
86 cd03218 ABC_YhbG The ABC trans 99.8 7E-20 1.5E-24 154.0 12.4 148 77-227 1-178 (232)
87 cd03260 ABC_PstB_phosphate_tra 99.8 5.3E-20 1.1E-24 154.3 11.6 148 77-227 1-186 (227)
88 cd03262 ABC_HisP_GlnQ_permease 99.8 2E-20 4.2E-25 155.3 8.7 148 77-227 1-180 (213)
89 PRK11831 putative ABC transpor 99.8 1.3E-20 2.8E-25 162.2 7.8 150 75-227 6-188 (269)
90 COG4619 ABC-type uncharacteriz 99.8 4.1E-20 8.8E-25 146.0 9.7 127 76-218 3-169 (223)
91 cd03231 ABC_CcmA_heme_exporter 99.8 2.1E-20 4.6E-25 154.2 8.5 148 77-227 1-170 (201)
92 cd03219 ABC_Mj1267_LivG_branch 99.8 1.2E-19 2.5E-24 153.0 13.0 148 77-227 1-188 (236)
93 PRK10851 sulfate/thiosulfate t 99.8 4.3E-20 9.2E-25 164.8 10.7 149 76-227 2-181 (353)
94 TIGR02315 ABC_phnC phosphonate 99.8 6.1E-20 1.3E-24 155.4 11.2 148 77-227 2-190 (243)
95 cd03264 ABC_drug_resistance_li 99.8 2.6E-20 5.7E-25 154.5 8.5 147 77-227 1-175 (211)
96 PRK09493 glnQ glutamine ABC tr 99.8 5.5E-20 1.2E-24 155.5 10.6 148 77-227 2-181 (240)
97 cd03296 ABC_CysA_sulfate_impor 99.8 1.3E-19 2.8E-24 153.2 12.7 149 76-227 2-181 (239)
98 COG4608 AppF ABC-type oligopep 99.8 7.2E-20 1.6E-24 154.9 10.8 130 75-220 3-147 (268)
99 PRK13638 cbiO cobalt transport 99.8 6E-20 1.3E-24 158.2 10.6 149 76-227 1-181 (271)
100 cd03235 ABC_Metallic_Cations A 99.8 3.4E-20 7.4E-25 154.1 8.6 145 79-227 2-177 (213)
101 TIGR01189 ccmA heme ABC export 99.8 9.2E-21 2E-25 155.9 5.1 148 77-227 1-172 (198)
102 cd03223 ABCD_peroxisomal_ALDP 99.8 9.7E-20 2.1E-24 146.1 10.8 134 78-227 2-136 (166)
103 TIGR03411 urea_trans_UrtD urea 99.8 2.1E-19 4.6E-24 152.1 13.4 149 76-227 2-188 (242)
104 PRK10253 iron-enterobactin tra 99.8 3.7E-20 8E-25 159.0 8.7 151 74-227 5-188 (265)
105 PRK11247 ssuB aliphatic sulfon 99.8 1.4E-19 3.1E-24 154.9 12.3 150 75-227 11-178 (257)
106 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 1.4E-19 3E-24 152.8 12.0 148 77-227 2-177 (236)
107 cd03232 ABC_PDR_domain2 The pl 99.8 4.7E-20 1E-24 151.2 8.8 138 76-227 3-153 (192)
108 PRK13539 cytochrome c biogenes 99.8 2.2E-19 4.9E-24 148.8 12.9 149 76-227 2-172 (207)
109 PRK13635 cbiO cobalt transport 99.8 1.6E-20 3.4E-25 162.6 6.2 150 75-227 4-185 (279)
110 PRK13637 cbiO cobalt transport 99.8 9.3E-20 2E-24 158.4 10.9 148 77-227 3-189 (287)
111 TIGR01186 proV glycine betaine 99.8 1.5E-20 3.4E-25 167.9 6.1 141 84-227 1-174 (363)
112 PRK11614 livF leucine/isoleuci 99.8 1.7E-19 3.7E-24 152.3 12.1 150 75-227 4-182 (237)
113 PRK11264 putative amino-acid A 99.8 9.9E-20 2.1E-24 154.8 10.5 149 76-227 3-189 (250)
114 cd03222 ABC_RNaseL_inhibitor T 99.8 5.2E-20 1.1E-24 149.2 8.3 113 80-227 4-116 (177)
115 PRK11022 dppD dipeptide transp 99.8 2.5E-20 5.5E-25 164.7 6.9 150 76-227 3-198 (326)
116 PRK13647 cbiO cobalt transport 99.8 2.2E-20 4.8E-25 161.3 6.4 149 76-227 4-183 (274)
117 TIGR02868 CydC thiol reductant 99.8 4E-20 8.6E-25 173.0 8.4 148 76-227 334-515 (529)
118 PRK10895 lipopolysaccharide AB 99.8 5.4E-20 1.2E-24 155.7 8.4 148 76-226 3-181 (241)
119 cd03295 ABC_OpuCA_Osmoprotecti 99.8 3E-19 6.5E-24 151.3 12.9 148 77-227 1-180 (242)
120 PRK11300 livG leucine/isoleuci 99.8 2.8E-19 6.1E-24 152.5 12.8 149 75-226 4-197 (255)
121 PRK15079 oligopeptide ABC tran 99.8 3.6E-20 7.8E-25 163.9 7.5 150 74-226 6-205 (331)
122 TIGR03005 ectoine_ehuA ectoine 99.8 5.2E-20 1.1E-24 156.8 8.2 148 77-227 1-191 (252)
123 cd03257 ABC_NikE_OppD_transpor 99.8 3E-20 6.5E-25 155.7 6.5 149 76-227 1-190 (228)
124 PRK14250 phosphate ABC transpo 99.8 1.5E-19 3.3E-24 153.1 10.9 149 76-227 3-176 (241)
125 TIGR03740 galliderm_ABC gallid 99.8 1.6E-19 3.5E-24 151.0 11.0 148 77-227 1-169 (223)
126 cd03233 ABC_PDR_domain1 The pl 99.8 6.5E-20 1.4E-24 151.5 8.4 144 76-227 3-163 (202)
127 PRK13648 cbiO cobalt transport 99.8 3.1E-20 6.8E-25 159.8 6.6 151 74-227 5-187 (269)
128 PRK11308 dppF dipeptide transp 99.8 3.9E-20 8.5E-25 163.5 7.4 149 75-226 4-198 (327)
129 PRK10575 iron-hydroxamate tran 99.8 3.3E-19 7.2E-24 153.1 12.8 150 75-227 10-192 (265)
130 PRK13650 cbiO cobalt transport 99.8 6.6E-20 1.4E-24 158.7 8.4 148 76-226 4-184 (279)
131 cd03294 ABC_Pro_Gly_Bertaine T 99.8 2.3E-20 5.1E-25 160.7 5.5 147 78-227 26-205 (269)
132 PRK11124 artP arginine transpo 99.8 1.4E-19 3.1E-24 153.2 10.2 149 76-227 2-186 (242)
133 COG2274 SunT ABC-type bacterio 99.8 5.9E-20 1.3E-24 175.7 8.5 144 74-227 469-654 (709)
134 PRK13652 cbiO cobalt transport 99.8 9.3E-20 2E-24 157.6 9.0 149 76-227 3-182 (277)
135 TIGR02982 heterocyst_DevA ABC 99.8 7.5E-20 1.6E-24 152.9 8.1 148 77-227 2-186 (220)
136 PRK13548 hmuV hemin importer A 99.8 2.5E-20 5.5E-25 159.5 5.3 148 76-226 2-184 (258)
137 PRK09544 znuC high-affinity zi 99.8 2.8E-19 6.2E-24 152.5 11.7 148 76-226 4-164 (251)
138 PRK14247 phosphate ABC transpo 99.8 5.9E-19 1.3E-23 150.1 13.6 150 76-227 3-191 (250)
139 TIGR02323 CP_lyasePhnK phospho 99.8 7.4E-20 1.6E-24 155.9 8.1 150 75-227 2-193 (253)
140 PRK11231 fecE iron-dicitrate t 99.8 2.5E-20 5.4E-25 159.1 5.1 149 76-227 2-183 (255)
141 PRK14254 phosphate ABC transpo 99.8 6.3E-19 1.4E-23 153.0 13.9 160 66-227 28-225 (285)
142 TIGR01188 drrA daunorubicin re 99.8 6.5E-20 1.4E-24 160.4 7.8 140 85-227 2-169 (302)
143 PRK09473 oppD oligopeptide tra 99.8 4.2E-20 9.1E-25 163.5 6.6 149 75-226 11-205 (330)
144 TIGR01978 sufC FeS assembly AT 99.8 1.9E-19 4.1E-24 152.3 10.1 148 77-227 1-189 (243)
145 PRK13632 cbiO cobalt transport 99.8 3.6E-20 7.8E-25 159.7 5.8 150 75-227 6-187 (271)
146 PRK13541 cytochrome c biogenes 99.8 3.6E-19 7.8E-24 146.2 11.4 146 77-226 2-167 (195)
147 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.4E-19 3E-24 143.6 8.5 124 79-227 2-125 (157)
148 TIGR02324 CP_lyasePhnL phospho 99.8 9.9E-20 2.1E-24 152.4 8.1 148 77-227 2-194 (224)
149 TIGR00972 3a0107s01c2 phosphat 99.8 6.6E-19 1.4E-23 149.6 13.2 148 77-227 2-189 (247)
150 PRK10619 histidine/lysine/argi 99.8 2.5E-19 5.4E-24 153.1 10.7 150 75-227 4-197 (257)
151 PRK15112 antimicrobial peptide 99.8 2.5E-19 5.5E-24 154.0 10.7 150 75-227 3-194 (267)
152 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 3E-19 6.6E-24 149.8 10.9 147 77-227 23-187 (224)
153 PRK11701 phnK phosphonate C-P 99.8 2.1E-19 4.6E-24 153.7 10.2 149 76-227 6-196 (258)
154 COG3840 ThiQ ABC-type thiamine 99.8 2.5E-19 5.5E-24 143.1 9.8 129 77-225 2-172 (231)
155 PRK14242 phosphate transporter 99.8 8.4E-19 1.8E-23 149.4 13.8 152 74-227 4-194 (253)
156 PRK13543 cytochrome c biogenes 99.8 7.6E-19 1.6E-23 146.3 13.1 150 75-227 10-182 (214)
157 PRK13636 cbiO cobalt transport 99.8 1.9E-19 4E-24 156.2 9.8 149 75-226 4-185 (283)
158 PRK14235 phosphate transporter 99.8 6.8E-19 1.5E-23 151.4 13.1 151 75-227 18-208 (267)
159 PRK13634 cbiO cobalt transport 99.8 1.1E-19 2.4E-24 158.1 8.4 148 77-227 3-190 (290)
160 PRK13646 cbiO cobalt transport 99.8 3.1E-19 6.7E-24 155.0 11.0 148 77-227 3-190 (286)
161 cd03369 ABCC_NFT1 Domain 2 of 99.8 1.2E-19 2.5E-24 150.3 7.9 147 76-227 6-170 (207)
162 PRK14259 phosphate ABC transpo 99.8 9.4E-19 2E-23 150.7 13.8 152 74-227 11-199 (269)
163 cd03244 ABCC_MRP_domain2 Domai 99.8 1.4E-19 3E-24 151.2 8.3 148 77-227 3-184 (221)
164 PRK13644 cbiO cobalt transport 99.8 4.2E-19 9.2E-24 153.3 11.6 147 77-226 2-180 (274)
165 PRK14237 phosphate transporter 99.8 9E-19 1.9E-23 150.6 13.5 155 71-227 15-208 (267)
166 cd03254 ABCC_Glucan_exporter_l 99.8 6.4E-20 1.4E-24 154.0 6.2 148 77-227 3-184 (229)
167 PRK13641 cbiO cobalt transport 99.8 1.7E-19 3.7E-24 156.7 9.0 149 76-227 2-190 (287)
168 cd03251 ABCC_MsbA MsbA is an e 99.8 1.5E-19 3.2E-24 152.2 8.1 148 77-227 1-183 (234)
169 PRK14273 phosphate ABC transpo 99.8 3.9E-19 8.5E-24 151.6 10.7 151 74-227 5-195 (254)
170 PRK14248 phosphate ABC transpo 99.8 7.2E-19 1.6E-23 151.2 12.3 151 75-227 20-209 (268)
171 PRK15056 manganese/iron transp 99.8 4E-19 8.6E-24 153.2 10.7 149 76-227 6-187 (272)
172 COG1122 CbiO ABC-type cobalt t 99.8 7.6E-20 1.6E-24 154.2 6.0 143 75-226 2-182 (235)
173 TIGR02769 nickel_nikE nickel i 99.8 5.2E-19 1.1E-23 151.9 11.2 149 76-227 2-195 (265)
174 PRK14267 phosphate ABC transpo 99.8 1E-18 2.2E-23 148.9 12.8 149 76-227 4-194 (253)
175 cd03245 ABCC_bacteriocin_expor 99.8 7.5E-19 1.6E-23 146.6 11.8 148 77-227 3-185 (220)
176 PRK13633 cobalt transporter AT 99.8 3.8E-19 8.3E-24 154.0 10.4 150 75-227 3-189 (280)
177 PRK14268 phosphate ABC transpo 99.8 1.1E-18 2.5E-23 149.2 13.0 152 74-227 10-199 (258)
178 PRK10938 putative molybdenum t 99.8 5E-19 1.1E-23 164.3 11.5 149 76-227 3-180 (490)
179 PRK09984 phosphonate/organopho 99.8 7E-19 1.5E-23 150.8 11.6 150 75-227 3-197 (262)
180 TIGR03873 F420-0_ABC_ATP propo 99.8 1.1E-18 2.4E-23 149.1 12.7 148 77-227 2-182 (256)
181 PRK10744 pstB phosphate transp 99.8 1.3E-18 2.8E-23 149.1 13.1 152 74-227 11-201 (260)
182 PRK14269 phosphate ABC transpo 99.8 1.2E-18 2.5E-23 148.1 12.7 150 76-227 2-187 (246)
183 PRK13649 cbiO cobalt transport 99.8 6.2E-19 1.3E-23 152.5 11.3 148 77-227 3-190 (280)
184 CHL00131 ycf16 sulfate ABC tra 99.8 9.8E-19 2.1E-23 148.9 12.2 151 74-227 5-196 (252)
185 COG1119 ModF ABC-type molybden 99.8 6.2E-19 1.3E-23 146.8 10.6 146 72-226 27-215 (257)
186 PRK15093 antimicrobial peptide 99.8 1.6E-19 3.4E-24 159.9 7.5 151 75-227 2-203 (330)
187 cd03300 ABC_PotA_N PotA is an 99.8 1.6E-18 3.5E-23 146.0 13.3 147 78-227 2-175 (232)
188 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.8E-19 4E-24 173.4 8.5 149 76-227 451-633 (686)
189 TIGR00968 3a0106s01 sulfate AB 99.8 6.4E-19 1.4E-23 148.9 10.8 148 77-227 1-175 (237)
190 cd03248 ABCC_TAP TAP, the Tran 99.8 1.9E-19 4E-24 150.9 7.4 152 73-227 8-195 (226)
191 PRK10762 D-ribose transporter 99.8 6E-19 1.3E-23 164.2 11.5 150 75-227 3-186 (501)
192 cd03252 ABCC_Hemolysin The ABC 99.8 1.1E-19 2.5E-24 153.3 5.9 148 77-227 1-183 (237)
193 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.7E-19 3.6E-24 152.4 6.9 148 77-227 1-184 (238)
194 PRK13547 hmuV hemin importer A 99.8 1.1E-19 2.4E-24 156.8 5.9 148 77-227 2-199 (272)
195 PRK13643 cbiO cobalt transport 99.8 9.4E-19 2E-23 152.1 11.8 148 76-226 1-188 (288)
196 PRK14274 phosphate ABC transpo 99.8 1.7E-18 3.7E-23 148.1 13.2 151 75-227 11-200 (259)
197 PRK09580 sufC cysteine desulfu 99.8 8.3E-19 1.8E-23 148.9 11.1 148 77-226 2-189 (248)
198 PRK13639 cbiO cobalt transport 99.8 8.6E-19 1.9E-23 151.4 11.4 148 77-227 2-182 (275)
199 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1.1E-19 2.4E-24 175.5 6.5 149 76-227 477-660 (710)
200 COG4525 TauB ABC-type taurine 99.8 1.7E-18 3.8E-23 139.8 12.3 141 76-222 3-172 (259)
201 PRK14241 phosphate transporter 99.8 7.5E-19 1.6E-23 150.3 10.8 150 76-227 4-193 (258)
202 PRK14270 phosphate ABC transpo 99.8 6.7E-19 1.4E-23 149.9 10.3 151 75-227 3-192 (251)
203 PRK15439 autoinducer 2 ABC tra 99.8 1.3E-18 2.8E-23 162.3 12.7 150 75-227 10-185 (510)
204 COG1123 ATPase components of v 99.8 2.8E-19 6E-24 164.4 8.1 147 73-222 277-469 (539)
205 PRK09700 D-allose transporter 99.8 1.4E-18 3.1E-23 162.0 12.9 150 75-227 4-190 (510)
206 PRK13645 cbiO cobalt transport 99.8 3.7E-19 8E-24 154.7 8.4 150 75-227 5-195 (289)
207 PRK14236 phosphate transporter 99.8 3.6E-18 7.7E-23 147.3 14.5 152 74-227 23-213 (272)
208 cd03288 ABCC_SUR2 The SUR doma 99.8 5.2E-19 1.1E-23 151.3 9.2 152 73-227 16-201 (257)
209 cd03298 ABC_ThiQ_thiamine_tran 99.8 1.7E-18 3.7E-23 143.6 12.0 146 77-227 1-173 (211)
210 COG0396 sufC Cysteine desulfur 99.8 1.2E-18 2.6E-23 143.8 10.8 137 76-221 3-183 (251)
211 cd03253 ABCC_ATM1_transporter 99.8 1.7E-19 3.7E-24 152.0 6.0 147 78-227 2-182 (236)
212 PRK13631 cbiO cobalt transport 99.8 1E-18 2.2E-23 154.1 11.0 149 75-226 20-220 (320)
213 PRK14262 phosphate ABC transpo 99.8 9.6E-19 2.1E-23 148.8 10.5 150 76-227 3-191 (250)
214 PRK14243 phosphate transporter 99.8 2.8E-18 6.2E-23 147.3 13.5 152 74-227 8-196 (264)
215 PRK10418 nikD nickel transport 99.8 9.1E-19 2E-23 149.5 10.3 148 76-227 4-185 (254)
216 PRK13640 cbiO cobalt transport 99.8 1.9E-19 4.2E-24 156.0 6.3 149 76-227 5-188 (282)
217 PRK14258 phosphate ABC transpo 99.8 2.9E-18 6.4E-23 146.9 13.4 153 72-227 3-195 (261)
218 TIGR01277 thiQ thiamine ABC tr 99.8 1.8E-18 4E-23 143.8 11.7 145 78-227 2-173 (213)
219 PRK10419 nikE nickel transport 99.8 1.4E-18 3E-23 149.5 11.3 149 76-227 3-196 (268)
220 TIGR02857 CydD thiol reductant 99.8 2E-19 4.4E-24 168.2 6.6 149 76-227 320-503 (529)
221 PRK14260 phosphate ABC transpo 99.8 1.4E-18 3.1E-23 148.7 11.2 151 75-227 6-195 (259)
222 PRK13651 cobalt transporter AT 99.8 9.8E-19 2.1E-23 153.2 10.3 149 76-227 2-210 (305)
223 TIGR01193 bacteriocin_ABC ABC- 99.8 1.6E-19 3.4E-24 174.4 5.8 149 76-227 473-656 (708)
224 PRK11176 lipid transporter ATP 99.8 5.7E-19 1.2E-23 167.0 9.3 149 76-227 341-525 (582)
225 PRK14245 phosphate ABC transpo 99.8 1.5E-18 3.2E-23 147.7 11.0 151 75-227 2-191 (250)
226 PRK14263 phosphate ABC transpo 99.8 1.8E-18 4E-23 148.3 11.6 152 74-227 6-194 (261)
227 TIGR01166 cbiO cobalt transpor 99.8 7.1E-19 1.5E-23 143.7 8.6 139 86-227 2-172 (190)
228 COG4181 Predicted ABC-type tra 99.8 8.1E-20 1.8E-24 144.7 2.8 130 76-217 6-181 (228)
229 PRK14256 phosphate ABC transpo 99.8 1.8E-18 3.9E-23 147.4 11.3 150 76-227 4-193 (252)
230 KOG0058 Peptide exporter, ABC 99.8 8.5E-19 1.8E-23 164.1 10.0 146 76-224 465-646 (716)
231 PRK14265 phosphate ABC transpo 99.8 2.4E-18 5.2E-23 148.6 12.1 152 74-227 18-206 (274)
232 PRK14251 phosphate ABC transpo 99.8 3.8E-18 8.2E-23 145.2 13.1 151 75-227 3-192 (251)
233 PRK14272 phosphate ABC transpo 99.8 1.7E-18 3.7E-23 147.4 10.9 149 76-227 4-193 (252)
234 PRK14275 phosphate ABC transpo 99.8 1.7E-18 3.7E-23 150.4 11.0 152 74-227 37-227 (286)
235 PRK14252 phosphate ABC transpo 99.8 3E-18 6.4E-23 147.2 12.4 151 75-227 15-206 (265)
236 PRK13549 xylose transporter AT 99.8 1.4E-18 3E-23 162.0 11.1 151 75-227 4-188 (506)
237 PRK14271 phosphate ABC transpo 99.8 5.6E-18 1.2E-22 146.4 14.1 152 74-227 19-208 (276)
238 PRK10790 putative multidrug tr 99.8 4.9E-19 1.1E-23 167.8 8.2 149 76-227 340-521 (592)
239 PRK14261 phosphate ABC transpo 99.8 1.4E-18 3E-23 148.1 10.0 151 75-227 5-194 (253)
240 PRK13642 cbiO cobalt transport 99.8 5.5E-19 1.2E-23 152.8 7.5 148 76-226 4-184 (277)
241 PRK14239 phosphate transporter 99.8 4.7E-18 1E-22 144.7 13.0 151 75-227 4-193 (252)
242 PRK14240 phosphate transporter 99.8 4.9E-18 1.1E-22 144.4 13.2 150 76-227 3-191 (250)
243 TIGR03375 type_I_sec_LssB type 99.8 3.3E-19 7.2E-24 171.8 6.7 149 76-227 463-646 (694)
244 KOG0057 Mitochondrial Fe/S clu 99.8 8.3E-19 1.8E-23 159.6 8.6 148 76-227 351-532 (591)
245 PRK14238 phosphate transporter 99.8 3.2E-18 6.9E-23 147.5 11.9 151 75-227 23-212 (271)
246 PRK14249 phosphate ABC transpo 99.8 4.8E-18 1E-22 144.7 12.8 150 75-227 3-192 (251)
247 PRK11288 araG L-arabinose tran 99.8 2E-18 4.4E-23 160.7 11.2 150 75-227 3-185 (501)
248 PRK11144 modC molybdate transp 99.8 2.3E-18 5E-23 153.7 11.0 145 77-227 2-173 (352)
249 COG4107 PhnK ABC-type phosphon 99.8 1.4E-18 3E-23 138.3 8.2 150 74-226 4-195 (258)
250 PRK14253 phosphate ABC transpo 99.8 7.5E-18 1.6E-22 143.3 13.1 150 76-227 3-190 (249)
251 PRK14255 phosphate ABC transpo 99.8 7.8E-18 1.7E-22 143.4 13.2 151 75-227 4-193 (252)
252 cd03250 ABCC_MRP_domain1 Domai 99.8 3.2E-18 7E-23 141.3 10.5 143 77-224 1-169 (204)
253 PRK10771 thiQ thiamine transpo 99.8 9.1E-18 2E-22 141.4 13.2 146 77-227 2-174 (232)
254 COG4987 CydC ABC-type transpor 99.8 2.1E-18 4.7E-23 156.7 9.9 140 76-225 336-517 (573)
255 PRK11160 cysteine/glutathione 99.8 7.1E-19 1.5E-23 166.2 7.1 150 75-227 337-520 (574)
256 PRK14246 phosphate ABC transpo 99.8 7.2E-18 1.6E-22 144.3 12.7 151 74-227 8-198 (257)
257 PRK14264 phosphate ABC transpo 99.8 4.3E-18 9.3E-23 149.2 11.4 151 75-227 44-245 (305)
258 PRK11174 cysteine/glutathione 99.8 4.4E-19 9.5E-24 167.9 5.5 147 76-227 349-530 (588)
259 COG4133 CcmA ABC-type transpor 99.8 1.4E-18 3E-23 139.4 7.4 142 76-220 2-168 (209)
260 COG1132 MdlB ABC-type multidru 99.8 7.2E-19 1.6E-23 165.9 6.9 147 76-226 328-509 (567)
261 PRK13657 cyclic beta-1,2-gluca 99.8 1.3E-18 2.7E-23 164.9 8.4 148 76-227 334-516 (588)
262 cd03299 ABC_ModC_like Archeal 99.8 1.1E-17 2.3E-22 141.3 13.0 147 77-227 1-174 (235)
263 cd03297 ABC_ModC_molybdenum_tr 99.8 1.5E-18 3.2E-23 144.4 7.6 141 81-227 5-176 (214)
264 PRK14244 phosphate ABC transpo 99.8 1E-17 2.2E-22 142.6 12.6 149 77-227 6-194 (251)
265 TIGR00958 3a01208 Conjugate Tr 99.8 1.6E-18 3.4E-23 167.5 8.5 145 76-223 478-658 (711)
266 PRK10636 putative ABC transpor 99.8 4.6E-18 9.9E-23 162.4 11.5 149 76-227 1-194 (638)
267 COG0444 DppD ABC-type dipeptid 99.8 1.3E-18 2.9E-23 150.2 7.0 68 76-143 1-76 (316)
268 TIGR01194 cyc_pep_trnsptr cycl 99.8 2.9E-18 6.4E-23 161.4 10.0 147 76-225 337-513 (555)
269 PRK14266 phosphate ABC transpo 99.8 5.6E-18 1.2E-22 144.1 10.7 150 76-227 3-191 (250)
270 cd03289 ABCC_CFTR2 The CFTR su 99.8 2.4E-18 5.3E-23 148.6 8.5 147 77-227 3-183 (275)
271 TIGR02203 MsbA_lipidA lipid A 99.8 2.8E-18 6E-23 161.8 9.5 148 76-227 330-514 (571)
272 PRK11819 putative ABC transpor 99.8 9.4E-18 2E-22 158.1 13.0 149 75-227 5-208 (556)
273 TIGR02633 xylG D-xylose ABC tr 99.7 5.6E-18 1.2E-22 157.6 11.3 149 76-227 1-186 (500)
274 PRK10261 glutathione transport 99.7 1.4E-18 3.1E-23 165.6 7.3 149 75-226 312-507 (623)
275 TIGR02142 modC_ABC molybdenum 99.7 4.6E-18 1E-22 151.9 10.1 142 81-227 4-176 (354)
276 PRK15064 ABC transporter ATP-b 99.7 1.1E-17 2.3E-22 156.8 13.0 147 77-227 2-200 (530)
277 PRK15134 microcin C ABC transp 99.7 6.5E-18 1.4E-22 158.2 11.2 150 75-227 4-201 (529)
278 PRK10522 multidrug transporter 99.7 2.9E-18 6.3E-23 161.2 8.8 148 76-226 322-493 (547)
279 TIGR02204 MsbA_rel ABC transpo 99.7 3.2E-18 6.9E-23 161.6 9.0 148 76-227 337-521 (576)
280 PRK10982 galactose/methyl gala 99.7 5.1E-18 1.1E-22 157.6 10.0 145 80-227 2-179 (491)
281 TIGR01846 type_I_sec_HlyB type 99.7 2.6E-18 5.6E-23 165.7 8.3 149 76-227 455-638 (694)
282 TIGR01192 chvA glucan exporter 99.7 3.5E-18 7.6E-23 161.9 8.6 149 76-227 334-516 (585)
283 TIGR01842 type_I_sec_PrtD type 99.7 1.7E-18 3.8E-23 162.6 6.2 149 76-227 316-499 (544)
284 PRK10789 putative multidrug tr 99.7 1.8E-18 3.9E-23 163.3 5.9 149 76-227 313-496 (569)
285 PRK15064 ABC transporter ATP-b 99.7 2.2E-17 4.7E-22 154.7 13.0 150 75-227 318-483 (530)
286 cd03290 ABCC_SUR1_N The SUR do 99.7 3.5E-17 7.7E-22 136.5 12.7 143 78-223 2-181 (218)
287 PRK14257 phosphate ABC transpo 99.7 1.7E-17 3.7E-22 146.8 11.0 150 75-226 79-269 (329)
288 PRK09700 D-allose transporter 99.7 1.5E-17 3.2E-22 155.2 11.2 148 75-227 264-454 (510)
289 TIGR02633 xylG D-xylose ABC tr 99.7 1.8E-17 3.9E-22 154.2 11.7 150 75-226 256-447 (500)
290 COG4136 ABC-type uncharacteriz 99.7 1.3E-17 2.8E-22 129.7 8.7 139 76-232 2-188 (213)
291 KOG0055 Multidrug/pheromone ex 99.7 5E-18 1.1E-22 166.8 8.0 152 75-229 349-539 (1228)
292 PRK10938 putative molybdenum t 99.7 2E-17 4.4E-22 153.5 11.7 150 75-227 259-446 (490)
293 cd03234 ABCG_White The White s 99.7 3.8E-17 8.3E-22 137.0 12.3 150 76-227 3-188 (226)
294 PRK13549 xylose transporter AT 99.7 2.2E-17 4.8E-22 153.9 11.7 150 75-226 258-449 (506)
295 KOG0056 Heavy metal exporter H 99.7 1.5E-17 3.2E-22 149.9 9.8 142 76-220 537-712 (790)
296 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 3.7E-17 8E-22 153.9 13.0 148 76-227 4-206 (552)
297 COG1123 ATPase components of v 99.7 5.6E-18 1.2E-22 155.9 7.2 142 75-227 4-199 (539)
298 COG4988 CydD ABC-type transpor 99.7 5.3E-18 1.2E-22 155.7 6.9 147 76-225 320-499 (559)
299 PRK11147 ABC transporter ATPas 99.7 2E-17 4.4E-22 158.0 11.2 150 74-227 317-485 (635)
300 PRK11147 ABC transporter ATPas 99.7 2.7E-17 5.9E-22 157.1 12.0 149 76-227 3-201 (635)
301 COG4161 ArtP ABC-type arginine 99.7 3.8E-17 8.2E-22 128.6 10.7 139 77-226 3-185 (242)
302 cd03267 ABC_NatA_like Similar 99.7 4.7E-17 1E-21 137.5 12.1 141 84-227 29-198 (236)
303 KOG4238 Bifunctional ATP sulfu 99.7 1.5E-17 3.3E-22 144.7 8.9 135 99-233 47-183 (627)
304 PTZ00265 multidrug resistance 99.7 1.2E-17 2.5E-22 171.3 9.5 149 76-227 1165-1403(1466)
305 PRK13545 tagH teichoic acids e 99.7 3E-17 6.4E-22 151.6 11.1 150 75-227 20-188 (549)
306 PRK10261 glutathione transport 99.7 2.7E-17 5.9E-22 156.8 11.2 150 74-226 10-212 (623)
307 PRK10636 putative ABC transpor 99.7 2.2E-17 4.7E-22 157.8 9.7 149 75-227 311-475 (638)
308 TIGR03269 met_CoM_red_A2 methy 99.7 8E-17 1.7E-21 150.6 12.8 148 77-226 1-212 (520)
309 COG4167 SapF ABC-type antimicr 99.7 4.1E-17 9E-22 130.8 9.2 67 75-142 3-78 (267)
310 PRK11819 putative ABC transpor 99.7 2.4E-17 5.2E-22 155.3 9.1 149 75-227 323-490 (556)
311 TIGR03269 met_CoM_red_A2 methy 99.7 8E-17 1.7E-21 150.6 12.3 149 75-226 278-471 (520)
312 PRK03695 vitamin B12-transport 99.7 1.8E-17 3.9E-22 141.1 7.0 142 78-227 2-178 (248)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 9.1E-17 2E-21 151.3 12.3 149 75-227 321-488 (552)
314 PRK15134 microcin C ABC transp 99.7 2.8E-17 6E-22 154.0 8.7 149 75-227 274-470 (529)
315 PRK10535 macrolide transporter 99.7 2.2E-17 4.7E-22 158.1 8.0 149 76-227 4-189 (648)
316 PLN03211 ABC transporter G-25; 99.7 4.4E-17 9.5E-22 156.0 10.0 147 78-227 70-251 (659)
317 COG1101 PhnK ABC-type uncharac 99.7 7.9E-17 1.7E-21 132.0 9.7 121 88-224 18-190 (263)
318 cd03236 ABC_RNaseL_inhibitor_d 99.7 6.6E-17 1.4E-21 138.3 9.7 144 80-227 4-184 (255)
319 PRK10982 galactose/methyl gala 99.7 6.7E-17 1.5E-21 150.1 10.6 147 75-226 249-435 (491)
320 TIGR01184 ntrCD nitrate transp 99.7 1.3E-16 2.8E-21 134.3 11.1 133 92-227 1-159 (230)
321 COG4674 Uncharacterized ABC-ty 99.7 1.4E-17 3.1E-22 134.5 4.9 68 75-143 4-72 (249)
322 TIGR01257 rim_protein retinal- 99.7 1E-17 2.2E-22 173.9 4.5 150 75-227 1936-2115(2272)
323 PLN03232 ABC transporter C fam 99.7 1.6E-17 3.4E-22 171.1 5.6 148 76-227 1234-1416(1495)
324 COG4586 ABC-type uncharacteriz 99.7 8.7E-17 1.9E-21 135.8 9.0 136 88-226 36-200 (325)
325 PRK13546 teichoic acids export 99.7 1.6E-16 3.6E-21 136.5 11.0 133 88-226 36-187 (264)
326 PLN03130 ABC transporter C fam 99.7 1.8E-17 3.9E-22 171.3 5.8 148 76-227 1237-1419(1622)
327 cd03291 ABCC_CFTR1 The CFTR su 99.7 2.3E-16 4.9E-21 136.8 11.7 145 74-225 37-202 (282)
328 TIGR02770 nickel_nikD nickel i 99.7 1.4E-16 3.1E-21 133.9 10.0 134 91-227 1-170 (230)
329 COG4618 ArpD ABC-type protease 99.7 3.4E-17 7.4E-22 148.0 6.4 150 75-227 333-517 (580)
330 TIGR00954 3a01203 Peroxysomal 99.7 2.2E-16 4.7E-21 151.5 12.2 150 75-227 450-627 (659)
331 PTZ00265 multidrug resistance 99.7 4.7E-17 1E-21 166.9 7.4 66 76-142 382-451 (1466)
332 TIGR01257 rim_protein retinal- 99.7 1.7E-17 3.8E-22 172.2 3.9 151 74-227 926-1106(2272)
333 PRK10762 D-ribose transporter 99.7 1.3E-16 2.9E-21 148.5 9.4 145 75-227 256-440 (501)
334 PRK15177 Vi polysaccharide exp 99.7 2.4E-16 5.3E-21 131.3 9.7 134 90-226 1-148 (213)
335 TIGR00957 MRP_assoc_pro multi 99.7 4.9E-17 1.1E-21 167.7 6.6 148 76-227 1284-1466(1522)
336 PTZ00243 ABC transporter; Prov 99.7 4.3E-17 9.4E-22 168.2 6.0 149 76-227 1308-1491(1560)
337 PRK13409 putative ATPase RIL; 99.7 6E-16 1.3E-20 146.5 12.7 148 74-227 338-498 (590)
338 cd03237 ABC_RNaseL_inhibitor_d 99.7 6.5E-16 1.4E-20 131.5 11.5 135 90-227 8-160 (246)
339 PLN03073 ABC transporter F fam 99.7 7.5E-16 1.6E-20 148.6 13.1 150 75-227 507-672 (718)
340 PRK03846 adenylylsulfate kinas 99.7 1.8E-15 4E-20 124.5 13.6 137 96-232 18-154 (198)
341 PRK15439 autoinducer 2 ABC tra 99.7 4.6E-16 1E-20 145.2 11.3 145 75-227 267-448 (510)
342 PRK11288 araG L-arabinose tran 99.7 3.8E-16 8.3E-21 145.4 10.3 144 76-226 257-440 (501)
343 PLN03073 ABC transporter F fam 99.7 5.9E-16 1.3E-20 149.3 11.8 147 74-227 175-389 (718)
344 PF00005 ABC_tran: ABC transpo 99.7 2.9E-16 6.3E-21 121.2 7.6 116 92-211 1-137 (137)
345 COG0488 Uup ATPase components 99.6 1.1E-15 2.5E-20 142.2 12.4 146 76-225 3-196 (530)
346 COG4778 PhnL ABC-type phosphon 99.6 1.4E-15 3E-20 120.7 10.8 145 76-228 4-198 (235)
347 KOG0055 Multidrug/pheromone ex 99.6 4.9E-16 1.1E-20 152.9 10.1 143 76-228 987-1175(1228)
348 PRK13409 putative ATPase RIL; 99.6 6.7E-16 1.4E-20 146.2 9.4 144 80-227 77-257 (590)
349 COG4615 PvdE ABC-type sideroph 99.6 1.1E-15 2.4E-20 134.9 9.5 67 76-143 322-389 (546)
350 cd03238 ABC_UvrA The excision 99.6 7.7E-16 1.7E-20 124.7 7.7 120 88-227 7-134 (176)
351 COG1134 TagH ABC-type polysacc 99.6 2.8E-15 6.1E-20 125.0 11.1 54 87-141 38-91 (249)
352 COG4172 ABC-type uncharacteriz 99.6 1.2E-15 2.6E-20 135.0 9.1 139 73-225 273-469 (534)
353 cd02027 APSK Adenosine 5'-phos 99.6 1.1E-14 2.3E-19 114.9 13.4 130 104-233 1-130 (149)
354 COG4172 ABC-type uncharacteriz 99.6 7.8E-16 1.7E-20 136.2 7.4 142 74-226 4-201 (534)
355 TIGR01271 CFTR_protein cystic 99.6 7.2E-16 1.6E-20 158.9 8.4 147 76-227 1217-1398(1490)
356 TIGR00455 apsK adenylylsulfate 99.6 1.2E-14 2.6E-19 118.2 13.7 140 93-232 9-148 (184)
357 TIGR00956 3a01205 Pleiotropic 99.6 2.8E-15 6.1E-20 153.5 11.5 150 76-227 759-947 (1394)
358 TIGR03771 anch_rpt_ABC anchore 99.6 6.9E-15 1.5E-19 123.2 10.0 127 97-227 1-158 (223)
359 COG0488 Uup ATPase components 99.6 9.7E-15 2.1E-19 136.0 11.5 149 74-226 319-483 (530)
360 COG5265 ATM1 ABC-type transpor 99.6 8.9E-15 1.9E-19 130.0 8.3 149 76-227 262-444 (497)
361 COG4148 ModC ABC-type molybdat 99.5 8.1E-15 1.7E-19 124.4 6.7 125 82-220 6-166 (352)
362 TIGR00955 3a01204 The Eye Pigm 99.5 2E-14 4.4E-19 137.0 10.2 138 87-227 36-211 (617)
363 TIGR00957 MRP_assoc_pro multi 99.5 1.9E-14 4.1E-19 148.8 9.9 146 76-226 636-804 (1522)
364 KOG0059 Lipid exporter ABCA1 a 99.5 2.1E-14 4.6E-19 141.6 9.3 150 75-227 563-743 (885)
365 PLN03130 ABC transporter C fam 99.5 4.2E-14 9.1E-19 146.6 10.8 147 76-227 614-785 (1622)
366 PRK00889 adenylylsulfate kinas 99.5 3.1E-13 6.7E-18 108.9 13.6 131 100-233 2-133 (175)
367 PLN03232 ABC transporter C fam 99.5 3.1E-14 6.8E-19 147.0 9.3 149 76-228 614-786 (1495)
368 PLN03140 ABC transporter G fam 99.5 1.1E-13 2.3E-18 142.1 10.1 150 76-227 867-1064(1470)
369 COG4138 BtuD ABC-type cobalami 99.5 1.2E-13 2.5E-18 110.3 7.2 66 91-165 14-79 (248)
370 TIGR00956 3a01205 Pleiotropic 99.5 2.6E-13 5.6E-18 139.3 10.7 138 88-227 73-254 (1394)
371 TIGR01271 CFTR_protein cystic 99.5 2.3E-13 5.1E-18 140.5 10.4 131 89-225 439-591 (1490)
372 KOG0061 Transporter, ABC super 99.4 1.4E-12 3E-17 124.1 11.8 132 88-221 42-209 (613)
373 KOG0054 Multidrug resistance-a 99.4 3.1E-13 6.8E-18 135.8 7.7 149 76-227 1138-1320(1381)
374 PLN03140 ABC transporter G fam 99.4 7.4E-13 1.6E-17 136.0 10.5 137 88-227 177-381 (1470)
375 KOG0927 Predicted transporter 99.4 8.6E-13 1.9E-17 120.4 7.1 150 74-226 387-553 (614)
376 TIGR01187 potA spermidine/putr 99.4 2.4E-13 5.3E-18 120.2 3.2 118 107-227 1-145 (325)
377 PTZ00243 ABC transporter; Prov 99.4 2.3E-12 5E-17 133.5 10.4 138 83-225 667-825 (1560)
378 cd03270 ABC_UvrA_I The excisio 99.3 5.4E-12 1.2E-16 106.0 9.8 35 85-119 4-38 (226)
379 PRK05506 bifunctional sulfate 99.3 1.9E-11 4.2E-16 116.9 12.7 138 96-233 454-591 (632)
380 PRK05541 adenylylsulfate kinas 99.3 5.4E-11 1.2E-15 95.9 13.3 132 99-233 4-135 (176)
381 PRK05537 bifunctional sulfate 99.3 2.5E-11 5.4E-16 114.5 12.0 137 96-233 386-525 (568)
382 cd03278 ABC_SMC_barmotin Barmo 99.3 3.1E-12 6.8E-17 105.4 4.9 131 93-227 14-162 (197)
383 COG4178 ABC-type uncharacteriz 99.3 1.7E-11 3.6E-16 114.7 10.2 148 75-227 391-560 (604)
384 cd00820 PEPCK_HprK Phosphoenol 99.3 5.2E-12 1.1E-16 93.7 5.0 48 89-143 2-49 (107)
385 TIGR03238 dnd_assoc_3 dnd syst 99.3 7.2E-12 1.6E-16 114.2 6.4 50 90-142 20-70 (504)
386 KOG0062 ATPase component of AB 99.2 1.3E-11 2.8E-16 112.3 7.0 142 76-221 80-237 (582)
387 COG4170 SapD ABC-type antimicr 99.2 4.6E-12 9.9E-17 104.0 3.3 90 76-174 3-99 (330)
388 KOG0054 Multidrug resistance-a 99.2 4.7E-11 1E-15 120.4 11.1 144 75-230 517-691 (1381)
389 cd03272 ABC_SMC3_euk Eukaryoti 99.2 9.4E-11 2E-15 99.1 10.5 42 78-125 5-46 (243)
390 PRK09825 idnK D-gluconate kina 99.2 3E-10 6.5E-15 92.0 10.6 111 101-219 2-118 (176)
391 KOG0927 Predicted transporter 99.1 1.8E-10 3.9E-15 105.4 8.3 55 76-131 75-129 (614)
392 KOG0066 eIF2-interacting prote 99.1 5.3E-10 1.1E-14 100.5 10.7 146 74-227 584-749 (807)
393 COG1129 MglA ABC-type sugar tr 99.1 6.2E-10 1.4E-14 102.3 10.3 147 74-227 261-446 (500)
394 KOG0060 Long-chain acyl-CoA tr 99.1 1.8E-09 3.9E-14 99.7 11.9 152 75-230 432-618 (659)
395 KOG0065 Pleiotropic drug resis 99.1 9.3E-11 2E-15 116.5 3.7 55 87-142 802-858 (1391)
396 KOG2355 Predicted ABC-type tra 99.0 2.3E-09 5E-14 87.9 9.3 66 75-141 12-78 (291)
397 cd03279 ABC_sbcCD SbcCD and ot 99.0 1E-09 2.2E-14 91.3 7.1 47 76-126 5-52 (213)
398 cd03283 ABC_MutS-like MutS-lik 99.0 4.5E-10 9.8E-15 92.7 3.9 36 89-126 14-49 (199)
399 KOG3354 Gluconate kinase [Carb 99.0 2.4E-09 5.2E-14 83.8 7.3 115 104-223 14-143 (191)
400 cd03271 ABC_UvrA_II The excisi 98.9 1E-08 2.2E-13 88.0 11.3 33 90-122 9-41 (261)
401 cd03273 ABC_SMC2_euk Eukaryoti 98.9 1.3E-09 2.9E-14 92.8 5.5 37 102-139 25-62 (251)
402 COG1245 Predicted ATPase, RNas 98.9 2.4E-09 5.3E-14 96.6 6.6 119 98-226 363-499 (591)
403 COG3265 GntK Gluconate kinase 98.9 5.4E-09 1.2E-13 81.2 7.6 109 108-223 1-116 (161)
404 cd03280 ABC_MutS2 MutS2 homolo 98.9 4.3E-09 9.4E-14 86.7 7.0 33 91-123 16-49 (200)
405 COG2401 ABC-type ATPase fused 98.9 5E-09 1.1E-13 93.7 7.5 126 88-215 395-540 (593)
406 cd03240 ABC_Rad50 The catalyti 98.9 1.3E-09 2.9E-14 90.2 3.0 125 95-227 16-167 (204)
407 PRK11545 gntK gluconate kinase 98.8 3.2E-08 7E-13 79.1 10.6 103 108-218 1-109 (163)
408 COG3845 ABC-type uncharacteriz 98.8 4.1E-08 8.9E-13 89.4 10.7 151 74-227 255-448 (501)
409 TIGR01313 therm_gnt_kin carboh 98.8 6.3E-08 1.4E-12 76.9 10.2 107 105-218 1-112 (163)
410 cd03243 ABC_MutS_homologs The 98.7 1.6E-08 3.4E-13 83.5 6.0 33 94-126 21-53 (202)
411 TIGR02858 spore_III_AA stage I 98.7 4.8E-08 1E-12 84.2 9.0 39 103-142 112-150 (270)
412 cd03274 ABC_SMC4_euk Eukaryoti 98.7 9.7E-09 2.1E-13 85.6 4.1 44 76-125 5-48 (212)
413 KOG0064 Peroxisomal long-chain 98.7 1.4E-07 3E-12 86.8 11.6 148 76-227 481-657 (728)
414 PRK00349 uvrA excinuclease ABC 98.7 1.1E-07 2.3E-12 94.4 11.6 43 76-123 614-656 (943)
415 cd01130 VirB11-like_ATPase Typ 98.7 1.1E-08 2.4E-13 83.4 3.8 48 92-140 15-62 (186)
416 cd03276 ABC_SMC6_euk Eukaryoti 98.6 2.3E-07 4.9E-12 76.5 10.0 129 92-227 12-158 (198)
417 PRK06762 hypothetical protein; 98.6 2.1E-07 4.6E-12 74.1 9.3 112 102-219 2-115 (166)
418 PRK06002 fliI flagellum-specif 98.6 4.5E-08 9.8E-13 89.5 5.9 67 74-142 137-207 (450)
419 cd02021 GntK Gluconate kinase 98.6 5.2E-07 1.1E-11 70.5 11.0 112 104-220 1-118 (150)
420 PRK10078 ribose 1,5-bisphospho 98.6 3.6E-07 7.8E-12 74.4 8.9 37 102-142 2-38 (186)
421 TIGR02322 phosphon_PhnN phosph 98.5 1.7E-06 3.7E-11 69.6 11.4 33 102-136 1-33 (179)
422 PRK09862 putative ATP-dependen 98.5 1.1E-07 2.3E-12 88.6 4.8 62 79-141 187-248 (506)
423 KOG0062 ATPase component of AB 98.5 4.1E-07 8.9E-12 83.4 8.3 146 74-226 360-526 (582)
424 PF12558 DUF3744: ATP-binding 98.5 1.6E-08 3.4E-13 70.3 -0.7 68 17-84 1-74 (74)
425 cd03227 ABC_Class2 ABC-type Cl 98.5 1.6E-07 3.4E-12 74.9 4.9 108 95-227 14-126 (162)
426 PRK00300 gmk guanylate kinase; 98.5 1.8E-07 3.9E-12 76.9 5.3 28 100-127 3-30 (205)
427 PRK07721 fliI flagellum-specif 98.5 1.3E-07 2.9E-12 86.6 4.9 51 88-140 145-195 (438)
428 TIGR00235 udk uridine kinase. 98.5 1.5E-07 3.2E-12 78.0 4.5 29 99-127 3-31 (207)
429 cd03282 ABC_MSH4_euk MutS4 hom 98.5 1.5E-07 3.3E-12 77.9 4.4 39 88-126 15-53 (204)
430 PF13555 AAA_29: P-loop contai 98.5 3.1E-07 6.7E-12 61.4 4.7 35 93-127 13-48 (62)
431 cd00227 CPT Chloramphenicol (C 98.5 2.9E-06 6.3E-11 68.3 11.3 115 101-219 1-130 (175)
432 PRK08149 ATP synthase SpaL; Va 98.4 1.9E-07 4.1E-12 85.1 4.4 54 87-142 137-193 (428)
433 PRK07196 fliI flagellum-specif 98.4 2.2E-07 4.7E-12 84.9 4.7 52 88-141 142-196 (434)
434 PRK07594 type III secretion sy 98.4 1.9E-07 4.1E-12 85.2 4.3 62 76-139 129-191 (433)
435 cd01136 ATPase_flagellum-secre 98.4 2.7E-07 5.9E-12 81.4 4.9 49 88-138 56-104 (326)
436 PRK08533 flagellar accessory p 98.4 4.3E-06 9.2E-11 70.5 11.1 39 99-138 21-60 (230)
437 PRK00635 excinuclease ABC subu 98.4 2.1E-06 4.6E-11 89.5 11.0 40 76-120 600-639 (1809)
438 PRK09270 nucleoside triphospha 98.4 3.7E-07 8.1E-12 76.8 4.4 35 98-133 29-63 (229)
439 cd03275 ABC_SMC1_euk Eukaryoti 98.4 5.7E-07 1.2E-11 76.5 5.1 37 97-135 18-54 (247)
440 PRK09099 type III secretion sy 98.3 5.9E-07 1.3E-11 82.3 5.2 50 88-139 150-199 (441)
441 PLN02796 D-glycerate 3-kinase 98.3 2.6E-07 5.7E-12 81.8 2.8 52 90-142 80-142 (347)
442 PF13671 AAA_33: AAA domain; P 98.3 2.8E-06 6.1E-11 65.5 8.1 109 104-217 1-115 (143)
443 KOG0066 eIF2-interacting prote 98.3 1.1E-06 2.5E-11 79.4 6.6 66 76-141 264-330 (807)
444 cd03287 ABC_MSH3_euk MutS3 hom 98.3 7.5E-07 1.6E-11 74.7 4.6 47 89-135 18-64 (222)
445 TIGR00767 rho transcription te 98.3 9.1E-07 2E-11 79.8 5.3 52 76-127 130-193 (415)
446 cd03281 ABC_MSH5_euk MutS5 hom 98.3 3.5E-06 7.5E-11 70.3 8.4 34 91-124 18-51 (213)
447 TIGR02546 III_secr_ATP type II 98.3 7.5E-07 1.6E-11 81.5 4.6 49 88-138 132-180 (422)
448 TIGR01026 fliI_yscN ATPase Fli 98.3 8.8E-07 1.9E-11 81.3 4.4 50 88-139 150-199 (440)
449 TIGR03497 FliI_clade2 flagella 98.3 1.1E-06 2.5E-11 80.0 5.0 52 88-141 124-175 (413)
450 TIGR00554 panK_bact pantothena 98.2 1.1E-06 2.4E-11 76.4 4.7 40 99-138 59-99 (290)
451 PRK13477 bifunctional pantoate 98.2 1.4E-06 3E-11 81.3 4.8 44 82-126 265-308 (512)
452 TIGR02788 VirB11 P-type DNA tr 98.2 1E-06 2.2E-11 77.5 3.7 42 95-137 137-178 (308)
453 PRK07960 fliI flagellum-specif 98.2 1.2E-06 2.5E-11 80.3 4.0 54 88-143 162-218 (455)
454 PRK06793 fliI flagellum-specif 98.2 1.9E-06 4.1E-11 78.8 5.3 62 77-140 131-193 (432)
455 TIGR03498 FliI_clade3 flagella 98.2 1.5E-06 3.3E-11 79.2 4.6 51 88-140 127-177 (418)
456 PRK05922 type III secretion sy 98.2 2E-06 4.2E-11 78.6 5.4 50 88-139 144-193 (434)
457 cd03284 ABC_MutS1 MutS1 homolo 98.2 1.4E-06 3.1E-11 72.7 4.2 37 89-126 18-54 (216)
458 PRK00635 excinuclease ABC subu 98.2 1.8E-06 3.9E-11 90.0 5.3 54 79-137 938-991 (1809)
459 TIGR03496 FliI_clade1 flagella 98.2 1.9E-06 4.2E-11 78.4 4.9 57 81-139 116-173 (411)
460 PRK05688 fliI flagellum-specif 98.2 1.4E-06 3E-11 79.9 4.0 53 88-142 155-210 (451)
461 PRK06315 type III secretion sy 98.2 1.4E-06 3.1E-11 79.7 4.0 50 88-138 151-200 (442)
462 cd03285 ABC_MSH2_euk MutS2 hom 98.2 1.9E-06 4.2E-11 72.3 4.4 37 88-124 16-52 (222)
463 cd02025 PanK Pantothenate kina 98.2 1.5E-06 3.3E-11 72.8 3.7 24 104-127 1-24 (220)
464 PRK10416 signal recognition pa 98.2 2.2E-06 4.8E-11 75.7 4.8 42 99-141 111-152 (318)
465 PRK08472 fliI flagellum-specif 98.2 2.1E-06 4.5E-11 78.5 4.6 52 88-141 144-195 (434)
466 TIGR00630 uvra excinuclease AB 98.1 2.2E-06 4.8E-11 85.0 4.8 42 76-122 612-653 (924)
467 PHA02530 pseT polynucleotide k 98.1 2.5E-05 5.4E-10 68.0 10.6 114 103-220 3-123 (300)
468 cd03277 ABC_SMC5_euk Eukaryoti 98.1 2.1E-05 4.6E-10 65.5 9.6 34 93-127 15-48 (213)
469 PRK06995 flhF flagellar biosyn 98.1 1.9E-06 4.1E-11 79.8 3.4 42 90-132 244-285 (484)
470 TIGR01069 mutS2 MutS2 family p 98.1 2.7E-06 5.8E-11 83.3 4.6 31 95-125 314-345 (771)
471 TIGR03263 guanyl_kin guanylate 98.1 2.2E-06 4.8E-11 68.9 3.3 26 102-127 1-26 (180)
472 PRK04863 mukB cell division pr 98.1 5.2E-06 1.1E-10 85.8 6.7 48 92-141 18-65 (1486)
473 COG0645 Predicted kinase [Gene 98.1 4.8E-05 1E-09 60.7 10.6 111 102-217 1-121 (170)
474 PRK05480 uridine/cytidine kina 98.1 4.6E-06 1E-10 68.9 5.0 28 100-127 4-31 (209)
475 cd02023 UMPK Uridine monophosp 98.1 2.7E-06 5.9E-11 69.7 3.5 24 104-127 1-24 (198)
476 TIGR00368 Mg chelatase-related 98.1 2.6E-06 5.6E-11 79.5 3.7 58 83-141 192-249 (499)
477 cd00879 Sar1 Sar1 subfamily. 98.1 3.9E-06 8.4E-11 67.8 4.0 49 91-141 9-65 (190)
478 cd02026 PRK Phosphoribulokinas 98.1 4.4E-06 9.5E-11 72.3 4.4 36 104-141 1-36 (273)
479 cd03239 ABC_SMC_head The struc 98.1 9E-06 1.9E-10 65.9 5.9 32 96-127 16-47 (178)
480 PF13476 AAA_23: AAA domain; P 98.0 4E-06 8.7E-11 67.9 3.6 35 92-127 10-44 (202)
481 COG1245 Predicted ATPase, RNas 98.0 1.1E-05 2.4E-10 73.4 6.6 51 81-133 79-130 (591)
482 PRK01889 GTPase RsgA; Reviewed 98.0 3.5E-06 7.6E-11 75.6 3.3 47 92-139 185-231 (356)
483 PRK08972 fliI flagellum-specif 98.0 5.9E-06 1.3E-10 75.5 4.8 39 88-127 149-187 (444)
484 smart00534 MUTSac ATPase domai 98.0 8.7E-06 1.9E-10 66.2 5.3 20 104-123 1-20 (185)
485 PRK07261 topology modulation p 98.0 3E-05 6.5E-10 62.4 8.1 24 104-127 2-25 (171)
486 PRK06820 type III secretion sy 98.0 7.6E-06 1.6E-10 75.0 5.1 45 88-134 150-194 (440)
487 PRK14723 flhF flagellar biosyn 98.0 6.6E-06 1.4E-10 79.7 4.5 46 91-137 174-221 (767)
488 PRK06936 type III secretion sy 98.0 9.7E-06 2.1E-10 74.2 5.0 42 88-131 149-190 (439)
489 smart00382 AAA ATPases associa 98.0 1.4E-05 3E-10 59.9 5.0 41 101-141 1-41 (148)
490 TIGR03574 selen_PSTK L-seryl-t 97.9 5.8E-05 1.3E-09 64.2 9.3 110 104-218 1-114 (249)
491 PRK10751 molybdopterin-guanine 97.9 1.3E-05 2.8E-10 64.7 4.8 39 101-140 5-46 (173)
492 cd01120 RecA-like_NTPases RecA 97.9 4E-05 8.6E-10 59.6 7.5 34 104-138 1-34 (165)
493 cd01131 PilT Pilus retraction 97.9 1.3E-05 2.9E-10 65.9 4.7 38 104-141 3-40 (198)
494 PRK06761 hypothetical protein; 97.9 0.00015 3.2E-09 62.9 11.3 114 102-217 3-124 (282)
495 PLN03046 D-glycerate 3-kinase; 97.9 1.5E-05 3.2E-10 72.4 5.2 40 101-141 211-253 (460)
496 PF10662 PduV-EutP: Ethanolami 97.9 4.8E-05 1E-09 59.4 7.4 38 104-141 3-41 (143)
497 PRK10463 hydrogenase nickel in 97.9 1.4E-05 3.1E-10 69.3 4.8 44 96-140 98-141 (290)
498 PLN02318 phosphoribulokinase/u 97.9 1.4E-05 3E-10 75.4 4.7 38 101-140 64-101 (656)
499 cd04155 Arl3 Arl3 subfamily. 97.9 1.7E-05 3.6E-10 62.9 4.6 39 102-141 14-60 (173)
500 TIGR00750 lao LAO/AO transport 97.9 1.4E-05 2.9E-10 70.1 4.2 39 89-127 21-59 (300)
No 1
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.5e-27 Score=188.91 Aligned_cols=152 Identities=63% Similarity=1.064 Sum_probs=138.5
Q ss_pred eeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHH
Q 026740 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR 161 (234)
Q Consensus 82 l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~ 161 (234)
+.|+...++....-.+.-++|.++|+.|+|||||||++.+|...+...+...+.+||++++..++.+++++.++|.++++
T Consensus 3 i~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniR 82 (197)
T COG0529 3 IVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIR 82 (197)
T ss_pred ccccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHH
Confidence 34444444444555667889999999999999999999999999886677889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 162 RIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
++..++.+|.+.++..++++..|+++.|+.+++++..-.+.+++.+.|.+.|.+|||||||+++++|+|+||
T Consensus 83 RvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~f 154 (197)
T COG0529 83 RVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNF 154 (197)
T ss_pred HHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999989999999999999999999999999999999997
No 2
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.4e-27 Score=180.07 Aligned_cols=155 Identities=86% Similarity=1.366 Sum_probs=144.7
Q ss_pred eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHH
Q 026740 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158 (234)
Q Consensus 79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~ 158 (234)
..|+.|+-..++-.++.-|--++|.++||.|.|||||||++-+|...+...+.-++.+||++++..++.++++..+++.+
T Consensus 8 atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~E 87 (207)
T KOG0635|consen 8 ATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNE 87 (207)
T ss_pred ccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhh
Confidence 35788888887777888888899999999999999999999999998864555678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
+++++..++.+|.+.++..+..+..|++.+|+.+++++..-.+.++++|.|.++|.+|||||||+.+|+|.|++|
T Consensus 88 NIRRigeVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgF 162 (207)
T KOG0635|consen 88 NIRRIGEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGF 162 (207)
T ss_pred hHHHHHHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=2.2e-26 Score=187.99 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=105.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
+++++|++++||+..+|+++|++|++||+++|+||||||||||+|||++|.. |++|+|.++|+++.. .. +
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-~~~G~I~i~g~~~~~--------~~-~ 71 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-PDSGSITVDGEDVGD--------KK-D 71 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-CCCceEEECCEeccc--------hh-h
Confidence 6789999999999999999999999999999999999999999999999887 999999999988752 11 2
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEec-------------------------------------------CcccHHHHHHH
Q 026740 156 RVENIRRIGEVAKLFADAGVICIACL-------------------------------------------ISPYRKDRDAC 192 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 192 (234)
... +|+ .++++||.+++++..+. +.+.+++.++|
T Consensus 72 ~~~-~R~--~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 72 ILK-LRR--KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred HHH-HHH--hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHH
Confidence 322 222 78899999988765332 12234455677
Q ss_pred HHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
|++.-.+.+ +++|||++.|+..-..+..+..
T Consensus 149 RALaM~P~v--mLFDEPTSALDPElv~EVL~vm 179 (240)
T COG1126 149 RALAMDPKV--MLFDEPTSALDPELVGEVLDVM 179 (240)
T ss_pred HHHcCCCCE--EeecCCcccCCHHHHHHHHHHH
Confidence 777777777 8999999999555544444433
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=5e-26 Score=192.70 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=105.4
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
.++++|+++.|+++.+++|+||++++|++++|+||||||||||+|+|+|+++ |.+|+|+++|+++.. ++..+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~-------~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIAS-------LSPKE 73 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhh-------cCHHH
Confidence 5788999999999999999999999999999999999999999999999998 999999999999875 33333
Q ss_pred HHHHHHHHHHHH-----------------------------------HHHHhcC-----ceEEEecCcccHHHHHHHHHh
Q 026740 156 RVENIRRIGEVA-----------------------------------KLFADAG-----VICIACLISPYRKDRDACRSM 195 (234)
Q Consensus 156 ~~~~~~~~~~~~-----------------------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l 195 (234)
+++.+.+++|.. ..+...+ ...+..++.+.++..-+|+++
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH
Confidence 322111111111 1111111 112233344555556677888
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++.++ +++|||++.|+.+..-.+++.+++
T Consensus 154 aQ~~~i--LLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 154 AQETPI--LLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred hcCCCE--EEeCCCccccCHHHHHHHHHHHHH
Confidence 888888 899999999998888777776654
No 5
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=1.2e-25 Score=198.14 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=106.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
+.++++|+++.||+..+++|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++.. .+++
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-p~~G~I~l~G~~i~~-------lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-PSSGEILLDGEDITD-------VPPE 75 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCC-------CChh
Confidence 46889999999999999999999999999999999999999999999999988 999999999999985 4444
Q ss_pred hHHHHHHHHHHHHHHHHhcCceEEEe-------------------------------------------cCcccHHHHHH
Q 026740 155 DRVENIRRIGEVAKLFADAGVICIAC-------------------------------------------LISPYRKDRDA 191 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 191 (234)
.| .++++||++.+++..+ ++.+.+++.+.
T Consensus 76 kR--------~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 76 KR--------PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred hc--------ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHH
Confidence 33 4555555555544321 12333455577
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++++..++++ +++|||.+.|+.+-+..+..-++
T Consensus 148 ARAL~~~P~v--LLLDEPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 148 ARALVPEPKV--LLLDEPLSALDAKLREQMRKELK 180 (352)
T ss_pred HHHhhcCcch--hhhcCcccchhHHHHHHHHHHHH
Confidence 8888888888 89999999998887776655444
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.9e-25 Score=195.80 Aligned_cols=142 Identities=21% Similarity=0.217 Sum_probs=106.6
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
.++++|+++.||+..+++++|++|+.||+++|+||||||||||||+|+|+.. |++|+|+++|++++. +.|++
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-~~~G~I~i~g~~vt~-------l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-PTSGEILIDGRDVTD-------LPPEK 74 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCC-------CChhH
Confidence 4788999999998779999999999999999999999999999999999988 999999999999986 33332
Q ss_pred H--------------------------------HHHHHHHHHHHHHHHhcCce--EEEecCcccHHHHHHHHHhCCCCCc
Q 026740 156 R--------------------------------VENIRRIGEVAKLFADAGVI--CIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 156 ~--------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
| .+..+++..++..+.-..+. ....++.+.+++.+.+++++.++.+
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence 2 11122222232222211111 1123345566777889999999998
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||.+.|+.+-+..+...+++
T Consensus 155 --~L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 155 --FLLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred --EEecCchhHhhHHHHHHHHHHHHH
Confidence 899999999998888776665553
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=7.1e-25 Score=182.95 Aligned_cols=134 Identities=15% Similarity=0.223 Sum_probs=103.3
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
+++++|+++.|++..+++|+||+|++||+++++|||||||||++|+|++++. |++|+|+++|+++.. +.+.+
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-pt~G~I~i~g~~i~~-------~d~~~ 72 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-PTSGEILIDGEDISD-------LDPVE 72 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-CCCceEEECCeeccc-------CCHHH
Confidence 4688999999999999999999999999999999999999999999999998 999999999999985 55555
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEec--------------------------------------------CcccHHHHHH
Q 026740 156 RVENIRRIGEVAKLFADAGVICIACL--------------------------------------------ISPYRKDRDA 191 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~ 191 (234)
+++. ++++.|..++++..+. +.+.+++...
T Consensus 73 LRr~------IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv 146 (309)
T COG1125 73 LRRK------IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGV 146 (309)
T ss_pred HHHh------hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHH
Confidence 5553 3344444444332111 1223344466
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
++++...+.+ +++|||+..++.-.++.+-..+
T Consensus 147 ~RALAadP~i--lLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 147 ARALAADPPI--LLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred HHHHhcCCCe--EeecCCccccChhhHHHHHHHH
Confidence 7777777777 8999999999776666554433
No 8
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.7e-24 Score=178.92 Aligned_cols=138 Identities=16% Similarity=0.244 Sum_probs=111.3
Q ss_pred cceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 76 ~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
+++++|+++.| ++++++++|||+|++||+++|+|+||||||||+|+|+|+.. |++|+|.++|.++.. +...
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-~t~G~i~~~g~~i~~-------~~~k 74 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-PTSGEILFNGVQITK-------LKGK 74 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-CCcceEEecccchhc-------cchH
Confidence 68999999999 89999999999999999999999999999999999999888 999999999999874 5555
Q ss_pred hHHHHHHHHHHHHHHHHhcCceEEEe--------------------------------------------------cCcc
Q 026740 155 DRVENIRRIGEVAKLFADAGVICIAC--------------------------------------------------LISP 184 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~ 184 (234)
+.+.+++ +++++||.+++.+-.. ++.+
T Consensus 75 ~lr~~r~---~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG 151 (258)
T COG3638 75 ELRKLRR---DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG 151 (258)
T ss_pred HHHHHHH---hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence 5655444 6788888877632210 0223
Q ss_pred cHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 185 YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 185 ~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..++.++++.++..+.+ ++-|||...|+....+...+-++
T Consensus 152 QQQRVaIARaL~Q~pki--ILADEPvasLDp~~a~~Vm~~l~ 191 (258)
T COG3638 152 QQQRVAIARALVQQPKI--ILADEPVASLDPESAKKVMDILK 191 (258)
T ss_pred hhHHHHHHHHHhcCCCE--EecCCcccccChhhHHHHHHHHH
Confidence 34455788888888888 88999999998887776555443
No 9
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=6e-24 Score=175.33 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=112.8
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----cC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~~ 149 (234)
++++++|++..||..++|++|||++++||+++|+|+||+|||||+|+|+|+++ +.+|+|.++|+|++..... .+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCe
Confidence 47899999999999999999999999999999999999999999999999998 8899999999999864322 13
Q ss_pred CCChhhHH--------HHHHH--------------HHHHHHHHHhcC---ceEEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 150 SFKAEDRV--------ENIRR--------------IGEVAKLFADAG---VICIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 150 ~~~~~~~~--------~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
++.|+.+. +++.. +..+..+|.... ...-..++.+.++...++++++.++.+ +
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl--L 158 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL--L 158 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE--E
Confidence 44444332 11110 111111111110 011133456677888999999999999 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||++.|...-.+.+++.+++
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~ 181 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKE 181 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHH
Confidence 99999999988888888887763
No 10
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.6e-24 Score=185.58 Aligned_cols=115 Identities=24% Similarity=0.296 Sum_probs=101.1
Q ss_pred CccccccccccccccccccccccceeeccccccccccccCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCC
Q 026740 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGS 113 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGs 113 (234)
.+++++|+||.++..++.....+.+..+....++. +..++|+||++++||+++|+|.|||
T Consensus 6 ~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~--------------------vvGv~~~sl~v~~GeIfViMGLSGS 65 (386)
T COG4175 6 EIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGL--------------------VVGVNDASLDVEEGEIFVIMGLSGS 65 (386)
T ss_pred EeecceeecccCHHHHHHHHHcCCcHHHHHHhhCc--------------------EEeeccceeeecCCeEEEEEecCCC
Confidence 67899999999999999988887777766554443 4568899999999999999999999
Q ss_pred cHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026740 114 GKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI 178 (234)
Q Consensus 114 GKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (234)
|||||+|+|++++. |++|+|+++|+|+.. ++..++++.++. .++++||.++++++
T Consensus 66 GKSTLvR~~NrLie-pt~G~ilv~g~di~~-------~~~~~Lr~~Rr~--~~sMVFQ~FaLlPh 120 (386)
T COG4175 66 GKSTLVRLLNRLIE-PTRGEILVDGKDIAK-------LSAAELRELRRK--KISMVFQSFALLPH 120 (386)
T ss_pred CHHHHHHHHhccCC-CCCceEEECCcchhc-------CCHHHHHHHHhh--hhhhhhhhhccccc
Confidence 99999999999998 999999999999984 888888887776 89999999998765
No 11
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=6.7e-24 Score=175.84 Aligned_cols=139 Identities=20% Similarity=0.237 Sum_probs=106.8
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~ 153 (234)
.+++++++++++||++.+++|+||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|+++.. ++.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-P~~GeI~i~G~~i~~-------ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-PDKGEILIDGEDIPQ-------LSE 77 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-CCCCeEEEcCcchhc-------cCH
Confidence 458999999999999999999999999999999999999999999999999998 999999999999874 666
Q ss_pred hhHHHHHHHHHHHHHHHHhcCc------eEEEec--------------------------------------CcccHHHH
Q 026740 154 EDRVENIRRIGEVAKLFADAGV------ICIACL--------------------------------------ISPYRKDR 189 (234)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--------------------------------------~~~~~~~~ 189 (234)
.++.+.++ .++.+||..++ ++++.+ +.+.+++.
T Consensus 78 ~~~~~ir~---r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv 154 (263)
T COG1127 78 EELYEIRK---RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRV 154 (263)
T ss_pred HHHHHHHh---heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHH
Confidence 55544433 34445554433 333222 12234455
Q ss_pred HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
..||++.-.+.+ +++|||+..++.-....+-+.+
T Consensus 155 aLARAialdPel--l~~DEPtsGLDPI~a~~~~~LI 188 (263)
T COG1127 155 ALARAIALDPEL--LFLDEPTSGLDPISAGVIDELI 188 (263)
T ss_pred HHHHHHhcCCCE--EEecCCCCCCCcchHHHHHHHH
Confidence 778888888888 8999999999665544443333
No 12
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=177.69 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=111.3
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-ccCCCCh
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKA 153 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-~~~~~~~ 153 (234)
++++++|+++.|++.++|+|+||++++|++++|+||||||||||+|+|+|+++ |.+|+|.+.|+++..... ..++|.|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCcceEEEccccccccccCCeEEEcC
Confidence 46899999999996689999999999999999999999999999999999998 999999999987543221 1234444
Q ss_pred hhHH---------------------HHHHHH-----HHHHHHHHh-----cCceEEEecCcccHHHHHHHHHhCCCCCce
Q 026740 154 EDRV---------------------ENIRRI-----GEVAKLFAD-----AGVICIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 154 ~~~~---------------------~~~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
+... .++++. ..+...+.. +....+..++.+..++.-+|++++..+++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l- 160 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL- 160 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE-
Confidence 4221 000000 111222222 22233455566777777889999999999
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++....+.+|+.+.+
T Consensus 161 -llLDEP~~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 161 -LLLDEPFTGVDVAGQKEIYDLLKE 184 (254)
T ss_pred -EEecCCcccCCHHHHHHHHHHHHH
Confidence 899999999999888888887754
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=7.7e-24 Score=176.17 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=110.1
Q ss_pred ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCC
Q 026740 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK 152 (234)
Q Consensus 77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~ 152 (234)
++++|+++.|+. ..+++++||+|++||+++|+||||||||||+++|.|+.. |++|.|.++|.++.. ++
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-pt~G~v~i~g~d~~~-------l~ 73 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-PTSGEVLINGKDLTK-------LS 73 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEcCc-------CC
Confidence 467889998853 479999999999999999999999999999999999888 899999999999874 55
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCceEE-------------------------------------------EecCcccHHHH
Q 026740 153 AEDRVENIRRIGEVAKLFADAGVICI-------------------------------------------ACLISPYRKDR 189 (234)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 189 (234)
..++...++. .++++||++++.+. ..++.+.+++.
T Consensus 74 ~~~~~~~R~~--~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRV 151 (226)
T COG1136 74 EKELAKLRRK--KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRV 151 (226)
T ss_pred HHHHHHHHHH--hEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHH
Confidence 5555444443 56666666655322 11123345666
Q ss_pred HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+||+++..+.+ ++.|||+..|+....+.+++.+++
T Consensus 152 AIARAL~~~P~i--ilADEPTgnLD~~t~~~V~~ll~~ 187 (226)
T COG1136 152 AIARALINNPKI--ILADEPTGNLDSKTAKEVLELLRE 187 (226)
T ss_pred HHHHHHhcCCCe--EEeeCccccCChHHHHHHHHHHHH
Confidence 889999999999 899999999999888888877764
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.5e-23 Score=171.78 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=106.3
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
.++++++++.|+...+++|+||+|.+||+++|+||||||||||+|+|+|+.. |++|+|.++|+.+... ..++++..|+
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v~~p-~~~~~~vFQ~ 80 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPVTGP-GPDIGYVFQE 80 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCcccCCC-CCCEEEEecc
Confidence 5788999999999999999999999999999999999999999999999998 9999999999987322 1111111111
Q ss_pred H--HHHHHHH------------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 156 R--VENIRRI------------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 156 ~--~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
. ..|+... ..+...+...++.. -..++.+.+++..++++++..+.+ +++|||+
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l--LLlDEPF 158 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL--LLLDEPF 158 (248)
T ss_pred CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence 0 0110000 01112222222211 123456778888999999999999 8999999
Q ss_pred hhhhhcchhhHHHHHH
Q 026740 211 QVCEARDPKGLYKLAR 226 (234)
Q Consensus 211 ~~l~~R~~~~l~~~~~ 226 (234)
..|+.-.+..+.+.+.
T Consensus 159 gALDalTR~~lq~~l~ 174 (248)
T COG1116 159 GALDALTREELQDELL 174 (248)
T ss_pred chhhHHHHHHHHHHHH
Confidence 9998888777666543
No 15
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3e-24 Score=178.36 Aligned_cols=143 Identities=16% Similarity=0.212 Sum_probs=104.4
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
+++++++++++||+..+++||||++++||+++|||||||||||++++|+|+++ |++|+|.++|++++. +++.
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-P~~G~v~~~G~~it~-------l~p~ 74 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITG-------LPPH 74 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-CCCceEEECCcccCC-------CCHH
Confidence 46889999999999999999999999999999999999999999999999999 999999999999974 3333
Q ss_pred hHHHH-HHHHHHHHHHHHhcC-------------------------------------------ceE-----EEecCccc
Q 026740 155 DRVEN-IRRIGEVAKLFADAG-------------------------------------------VIC-----IACLISPY 185 (234)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~-------------------------------------------~~~-----~~~~~~~~ 185 (234)
++.+. +.+..|+..+|...+ +.. ...+..+.
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 32110 000011111111111 110 01122334
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 186 RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 186 ~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+++++++.++.+ +++|||...+...+...+.+.+++
T Consensus 155 qR~LEIArALa~~P~l--LLLDEPaAGln~~e~~~l~~~i~~ 194 (250)
T COG0411 155 QRRLEIARALATQPKL--LLLDEPAAGLNPEETEELAELIRE 194 (250)
T ss_pred hHHHHHHHHHhcCCCE--EEecCccCCCCHHHHHHHHHHHHH
Confidence 4556888999999988 899999999988887777666553
No 16
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.1e-23 Score=176.09 Aligned_cols=138 Identities=15% Similarity=0.210 Sum_probs=109.0
Q ss_pred cceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCC
Q 026740 76 VAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~ 150 (234)
+++++++++.|.. ..+++|+||+|++|++++|+|.||||||||+|+|++|-. |++|+|.++|+++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-PtsG~v~v~G~di~~------- 72 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-PTSGSVFVDGQDLTA------- 72 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCceEEEcCEeccc-------
Confidence 4678899999975 579999999999999999999999999999999999887 999999999999984
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCceE------EEec------------------------------------CcccHHH
Q 026740 151 FKAEDRVENIRRIGEVAKLFADAGVIC------IACL------------------------------------ISPYRKD 188 (234)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------------------------------------~~~~~~~ 188 (234)
++...++..++ .++|+||.++++. ++++ +.+.+++
T Consensus 73 l~~~~Lr~~R~---~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQR 149 (339)
T COG1135 73 LSEAELRQLRQ---KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQR 149 (339)
T ss_pred CChHHHHHHHh---hccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhH
Confidence 66666655444 6888888887642 1111 2234556
Q ss_pred HHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 189 ~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..+||++...+.+ ++.||+++.|+....+.+.+.++
T Consensus 150 VaIARALa~~P~i--LL~DEaTSALDP~TT~sIL~LL~ 185 (339)
T COG1135 150 VAIARALANNPKI--LLCDEATSALDPETTQSILELLK 185 (339)
T ss_pred HHHHHHHhcCCCE--EEecCccccCChHHHHHHHHHHH
Confidence 6788888888888 88999999996666565555543
No 17
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.88 E-value=2.8e-22 Score=158.40 Aligned_cols=133 Identities=62% Similarity=1.035 Sum_probs=116.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEEEe
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC 180 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (234)
+|-++||+|.+|||||||++.|...+...+...+++||+.++..+..+++++.++|.++++++..++.++.+.+..+++.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 58899999999999999999999988766678899999999988888899999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 181 ~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
+..+.++.|+.+++.+....+.+++++.|.+.|.+||+|+||++.++|+++||
T Consensus 81 ~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~ 133 (156)
T PF01583_consen 81 FISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNF 133 (156)
T ss_dssp ----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSH
T ss_pred eccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCc
Confidence 99999999999999998778889999999999999999999999999999986
No 18
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.88 E-value=6.8e-23 Score=164.42 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=104.1
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
+++++|+++.|+ +..+|+|+||+|++||++.|+||||||||||+|+|++... |++|.|.++|.|+..... .
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-pt~G~i~~~~~dl~~l~~-------~ 72 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKG-------R 72 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-CCCceEEECCeecccccc-------c
Confidence 467899999995 4559999999999999999999999999999999999988 999999999999975322 2
Q ss_pred hHHHHHHHHHHHHHHHHhcCceE------EE------------------------------------ecCcccHHHHHHH
Q 026740 155 DRVENIRRIGEVAKLFADAGVIC------IA------------------------------------CLISPYRKDRDAC 192 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~------~~------------------------------------~~~~~~~~~~~~~ 192 (234)
+. ..+++ +++.+||++.+.. ++ .++.+.+++..+|
T Consensus 73 ~i-P~LRR--~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 73 EI-PFLRR--QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred cc-chhhh--eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence 21 12222 4555555544321 11 1133445667889
Q ss_pred HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++.+++.+ ++-|||+-.++.....++...+.
T Consensus 150 RAiV~~P~v--LlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 150 RAIVNQPAV--LLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred HHHccCCCe--EeecCCCCCCChHHHHHHHHHHH
Confidence 999999988 88999999997766666665544
No 19
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.87 E-value=1.2e-21 Score=158.92 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=105.3
Q ss_pred eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHH
Q 026740 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157 (234)
Q Consensus 78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~ 157 (234)
+++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|+++|+++.. +.+....
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~-------~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLAS-------LSPKELA 72 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCc-------CCHHHHH
Confidence 35789999988889999999999999999999999999999999999988 899999999998763 3333332
Q ss_pred HHHHHHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 158 ENIRRIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.++.+ .+...++. ....++.+.++....++.++..+.+ +++|||+..++....+.+++.+++
T Consensus 73 ~~i~~~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 73 RKIAYVPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPI--LLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred HHHhHHHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 22332222 22222221 1233455667777889999999998 899999999988888888777653
No 20
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.2e-22 Score=164.53 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=104.5
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCC--hh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK--AE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~--~~ 154 (234)
++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. +. ..
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-------~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTD-------LEDELP 72 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccc-------cchhHH
Confidence 357899999988889999999999999999999999999999999999988 899999999988753 22 11
Q ss_pred hHHHHHHHHHHHHHHHHhcCce------EEEe--cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 155 DRVENIRRIGEVAKLFADAGVI------CIAC--LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
.... .+++++|+...+ .... ++.+.++....+++++..+.+ +++|||+..++......+++.++
T Consensus 73 ~~~~------~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~l--lilDEP~~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 73 PLRR------RIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDV--LLLDEPTSALDPITRREVRALLK 144 (178)
T ss_pred HHhh------cEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 1111 233333433221 1111 555667777889999999998 89999999998888888877765
Q ss_pred c
Q 026740 227 E 227 (234)
Q Consensus 227 ~ 227 (234)
+
T Consensus 145 ~ 145 (178)
T cd03229 145 S 145 (178)
T ss_pred H
Confidence 4
No 21
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.87 E-value=3e-22 Score=160.20 Aligned_cols=127 Identities=22% Similarity=0.278 Sum_probs=102.9
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhH
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~ 156 (234)
++++|+++.|++.++++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|+++.. ..+.+.
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~-------~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSF-------ASPRDA 72 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCc-------CCHHHH
Confidence 357899999988899999999999999999999999999999999999988 899999999988753 222111
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+. .+++++| ++.+.++....++.++..+.+ +++|||+..++....+.+++.+++
T Consensus 73 ---~~~--~i~~~~q---------LS~G~~qrl~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 73 ---RRA--GIAMVYQ---------LSVGERQMVEIARALARNARL--LILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred ---Hhc--CeEEEEe---------cCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHHH
Confidence 110 1222222 566677778889999999988 899999999998888888888764
No 22
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.9e-22 Score=160.63 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=103.3
Q ss_pred ceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 77 AKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
++++|+++.|++. .+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|+++|+++.. +...
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~-------~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRD-------LDLE 72 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhh-------cCHH
Confidence 3578999999875 79999999999999999999999999999999999998 899999999988753 2222
Q ss_pred hHHHHHHHHHHHHHHHHhcCceEEEe----cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 155 DRVENIRRIGEVAKLFADAGVICIAC----LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.. .+++++|+...+.... ++.+.++....+++++..+.+ +++|||+..++......+++.+++
T Consensus 73 ~~~~------~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~l--lllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 73 SLRK------NIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPI--LILDEATSALDPETEALILEALRA 141 (171)
T ss_pred HHHh------hEEEEcCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHHH
Confidence 2111 2333333332221100 445566677788999999988 899999999998888888887764
No 23
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=5.7e-22 Score=172.67 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=110.9
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc---ccccCCC
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~---~~~~~~~ 151 (234)
+++++|+++.|+ .+.+|+++||++++|++++|+||||||||||+|+|+|++. |++|+|.++|.++... ....+++
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEEcCEeCccCHHHHHhheEE
Confidence 567899999999 6999999999999999999999999999999999999998 9999999999887541 1111222
Q ss_pred -----------ChhhHHHHHHHHH---------HHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 -----------KAEDRVENIRRIG---------EVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 -----------~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
+..+..+....+. .+..++...++.. +..++.+.++....+.+++..+.+ +++
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l--liL 160 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL--LIL 160 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 2222212111111 2223344444432 234566778888899999999988 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||+..|+...+..+++.+++
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHH
Confidence 999999988888877777664
No 24
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=6.8e-23 Score=183.93 Aligned_cols=171 Identities=21% Similarity=0.179 Sum_probs=119.4
Q ss_pred CccccccccccccccccccccccceeeccccccccccccCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCC
Q 026740 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGS 113 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGs 113 (234)
.+++|+|+||.+|.++++....+.+.++ +.+.|+...+++|+||++++||+++|+|+|||
T Consensus 2 ~~~~~~k~fg~~~~~~~~~~~~g~~~~~--------------------~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGs 61 (382)
T TIGR03415 2 DFKNVDVVFGDQPAEALALLDQGKTREE--------------------ILDETGLVVGVANASLDIEEGEICVLMGLSGS 61 (382)
T ss_pred EEEeeEEeeCCCHHHHHHHHHcCCCHHH--------------------HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCC
Confidence 4678999999999988876665444333 45678888899999999999999999999999
Q ss_pred cHHHHHHHHHhhcccCCccEEEEcCc----cccccc--------cccCCCChh--------hHHHHHHHH----------
Q 026740 114 GKSTLACALSQALHWRGKLTYILDGD----NCRHGL--------NRDLSFKAE--------DRVENIRRI---------- 163 (234)
Q Consensus 114 GKSTLlr~l~gll~~p~~G~i~~~g~----~v~~~~--------~~~~~~~~~--------~~~~~~~~~---------- 163 (234)
|||||+|+|+|+++ |++|+|+++|+ ++.... ...+++..+ ...+++.+.
T Consensus 62 GKSTLlr~L~Gl~~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~ 140 (382)
T TIGR03415 62 GKSSLLRAVNGLNP-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAE 140 (382)
T ss_pred cHHHHHHHHhCCCC-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHH
Confidence 99999999999998 99999999996 332110 001111111 111222110
Q ss_pred --HHHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 164 --GEVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 164 --~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+...+...++... ..++.+.++....+++++..+.+ +++|||++.|+...+..+++.+++
T Consensus 141 ~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I--LLlDEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 141 RRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI--LLMDEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCHHHHHHHHHHHHH
Confidence 011122222332211 22345566777889999999998 899999999998888888887754
No 25
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=162.69 Aligned_cols=149 Identities=11% Similarity=0.154 Sum_probs=113.3
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
.+++++++++||+..+++|+||++++|++++++|+|||||||++|+|.|++. |++|.|.++|.+++......+||-|++
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-ccCceEEEcCcchhhhhhhhcccChhh
Confidence 4688999999999999999999999999999999999999999999999998 999999999999887666667888877
Q ss_pred HH--------HHHHHHH------------HHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 156 RV--------ENIRRIG------------EVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 156 ~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
|. +.+.+++ .+.+.+..+.+... -.++.+..+.-+.+.+++..+.+ +++|+|+
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL--lILDEPF 158 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL--LILDEPF 158 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE--EEecCCc
Confidence 63 2222221 11222222222111 12244555666778889999999 8999999
Q ss_pred hhhhhcchhhHHHHHHc
Q 026740 211 QVCEARDPKGLYKLARE 227 (234)
Q Consensus 211 ~~l~~R~~~~l~~~~~~ 227 (234)
+.|+.-+.+.|-+.+.+
T Consensus 159 SGLDPVN~elLk~~I~~ 175 (300)
T COG4152 159 SGLDPVNVELLKDAIFE 175 (300)
T ss_pred cCCChhhHHHHHHHHHH
Confidence 99977776666655543
No 26
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.5e-22 Score=163.28 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=103.8
Q ss_pred eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHH
Q 026740 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157 (234)
Q Consensus 78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~ 157 (234)
+++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ |.+|+|.++|+++.. .. ..++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~-------~~-~~~~ 72 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKK-------EP-EEVK 72 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEccc-------ch-Hhhh
Confidence 57889999988789999999999999999999999999999999999988 899999999987752 11 1111
Q ss_pred HHHHHHHHHHHHHHhcCceE------EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 158 ENIRRIGEVAKLFADAGVIC------IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
. .+++++|+...+. ...++.+.++....+++++..+.+ +++|||+..++....+.+++.+++
T Consensus 73 ~------~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 73 R------RIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPEL--LILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred c------cEEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 1 2334444432221 111455666777889999999998 899999999988888888877764
No 27
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.9e-22 Score=164.68 Aligned_cols=148 Identities=22% Similarity=0.245 Sum_probs=103.7
Q ss_pred ccceeeceeeecCCcc----ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----
Q 026740 75 TVAKSTNILWHKNSVD----KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----- 145 (234)
++++++|+++.|+... ++++|||++.+||+++|+|+||||||||+|+|+|+.+ |++|+|.++|+.+....
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-PSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCceEEECCcccCccccchhh
Confidence 3688999999998877 9999999999999999999999999999999999988 99999999997665321
Q ss_pred cccC---------CCChhhHH-HHHHHHH----------HHHHHHHhcCceE------EEecCcccHHHHHHHHHhCCCC
Q 026740 146 NRDL---------SFKAEDRV-ENIRRIG----------EVAKLFADAGVIC------IACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 146 ~~~~---------~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
...+ +++|.... +.+.... .+..++...++-+ ...++.+.+++-.+++++.-++
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 0010 11111100 0000000 1222222222211 1224556677888999999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHH
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
.+ +++|||++.|+......++..+
T Consensus 161 kl--LIlDEptSaLD~siQa~IlnlL 184 (252)
T COG1124 161 KL--LILDEPTSALDVSVQAQILNLL 184 (252)
T ss_pred CE--EEecCchhhhcHHHHHHHHHHH
Confidence 99 8999999999877766655443
No 28
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=6.8e-22 Score=177.88 Aligned_cols=146 Identities=21% Similarity=0.254 Sum_probs=108.6
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc-----C
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----L 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~-----~ 149 (234)
+.++++++++.|+++.+.++|||++++||+++|+|+||||||||+++|.|++. |++|+|+++|+.+....+.+ +
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-PDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-CCcceEEECCEEeccCCHHHHHHcCC
Confidence 46788999999999999999999999999999999999999999999999999 99999999999986321100 1
Q ss_pred ---------------------CCChh-----hHHHHHHHHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCC
Q 026740 150 ---------------------SFKAE-----DRVENIRRIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 150 ---------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~ 198 (234)
+..+. +++...+ .+..+.+.+++. .+..++.+.+++.++++.+...
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~---~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA---RIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHH---HHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 11100 1111111 223333333332 1233345567777888999988
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..+ +++|||+.+|.....+.||..++
T Consensus 159 a~i--LILDEPTaVLTP~E~~~lf~~l~ 184 (501)
T COG3845 159 ARL--LILDEPTAVLTPQEADELFEILR 184 (501)
T ss_pred CCE--EEEcCCcccCCHHHHHHHHHHHH
Confidence 888 89999999999888888887665
No 29
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.6e-22 Score=170.67 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=102.4
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc---ccccccc--ccCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NCRHGLN--RDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~---~v~~~~~--~~~~ 150 (234)
.++++++++.|+...+++|+|++|+.||+++++||||||||||+|+|+|+.. |++|.|.++|+ |...... +.+|
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-PDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-CCCceEEECCEeccchhccchhhccee
Confidence 3677899999999999999999999999999999999999999999999998 99999999999 5543110 0011
Q ss_pred CChhhHH-------------------------HHHHHHHHHHHHHHhcCc--eEEEecCcccHHHHHHHHHhCCCCCceE
Q 026740 151 FKAEDRV-------------------------ENIRRIGEVAKLFADAGV--ICIACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 151 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
+.-++.. +...++...-.++|-.++ .....++.+.+++.+.++++..++.+
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v-- 158 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV-- 158 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe--
Confidence 1111110 111111111111111111 00112234456666788888888888
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+..-++.+.+-+++
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHH
Confidence 899999999998888887776653
No 30
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.8e-21 Score=158.91 Aligned_cols=130 Identities=17% Similarity=0.146 Sum_probs=97.4
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccccccc
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHGLNRD 148 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~~~~~ 148 (234)
.+.++++|+++.||...+|+|||++|+++++++++||||||||||+|+++++.. .. .|+|.++|+++...
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd-l~~~~r~~G~v~~~g~ni~~~---- 79 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND-LIPGARVEGEVLLDGKNIYDP---- 79 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc-cCcCceEEEEEEECCeeccCC----
Confidence 347889999999999999999999999999999999999999999999999876 33 49999999999641
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCceEEEe-----c----------------------------------------Cc
Q 026740 149 LSFKAEDRVENIRRIGEVAKLFADAGVICIAC-----L----------------------------------------IS 183 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------------------------------------~~ 183 (234)
..+.-+.++ .++++||.++.++..- + +.
T Consensus 80 -~~d~~~lRr------~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSG 152 (253)
T COG1117 80 -KVDVVELRR------RVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSG 152 (253)
T ss_pred -CCCHHHHHH------HheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCCh
Confidence 122222222 6777777776554211 1 12
Q ss_pred ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026740 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217 (234)
Q Consensus 184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~ 217 (234)
+.+++.-+||++.-.+.+ +++|||++.|+.-.
T Consensus 153 GQQQRLcIARalAv~PeV--lLmDEPtSALDPIs 184 (253)
T COG1117 153 GQQQRLCIARALAVKPEV--LLMDEPTSALDPIS 184 (253)
T ss_pred hHHHHHHHHHHHhcCCcE--EEecCcccccCchh
Confidence 223344566777666777 89999999995544
No 31
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.86 E-value=7.8e-22 Score=159.77 Aligned_cols=134 Identities=21% Similarity=0.174 Sum_probs=103.6
Q ss_pred ceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 77 AKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
++++|+++.|++. .+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++.. . ..
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~-------~-~~ 71 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSD-------L-EK 71 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHH-------H-HH
Confidence 3578899999765 79999999999999999999999999999999999988 899999999987642 1 11
Q ss_pred hHHHHHHHHHHHHHHHHhcCceE-------EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 155 DRVENIRRIGEVAKLFADAGVIC-------IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.. +. .+++++|++.++. ...++.+.++....+++++..+.+ +++|||+..++....+.+++.+++
T Consensus 72 ~~----~~--~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~--lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 72 AL----SS--LISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPI--VLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred HH----Hh--hEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence 11 11 2333444433221 223445566777889999999998 899999999998888888888765
No 32
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.86 E-value=4.5e-22 Score=160.54 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=104.7
Q ss_pred ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
++++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++.. +...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~-------~~~~ 72 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQ-------WDPN 72 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEccc-------CCHH
Confidence 357899999975 569999999999999999999999999999999999988 899999999988753 3322
Q ss_pred hHHHHHHHHHHHHHHHHhcCceEEE----ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 155 DRVENIRRIGEVAKLFADAGVICIA----CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+. .+++++|+...+... .++.+.++....+++++..+.+ +++|||+..++....+.+++.+++
T Consensus 73 ~~~~------~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~--lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 73 ELGD------HVGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRI--LVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred HHHh------heEEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCE--EEEECCccccCHHHHHHHHHHHHH
Confidence 2211 344445544322210 0455666777889999999998 899999999998888888777754
No 33
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.3e-21 Score=157.93 Aligned_cols=143 Identities=19% Similarity=0.187 Sum_probs=102.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
+++++|++++|+++.+++++|+++++|.+++++||||||||||+.+++++++ .++|+|+++|.++.. ++.++
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-~d~G~i~i~g~~~~~-------~~s~~ 72 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-KDSGEITIDGLELTS-------TPSKE 72 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-ccCceEEEeeeeccc-------CChHH
Confidence 3678999999999999999999999999999999999999999999999998 899999999999984 77777
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEec-------CcccHHHHHHHHHhCCCC-----------------------------
Q 026740 156 RVENIRRIGEVAKLFADAGVICIACL-------ISPYRKDRDACRSMLPEG----------------------------- 199 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~----------------------------- 199 (234)
+++.+..+.+........++...+.| .++..+++..+.++++-+
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeec
Confidence 76655444333322222222222222 122344554444443322
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+-.-+++|||.+.|+-...-.+.+.++
T Consensus 153 dTdyvlLDEPLNNLDmkHsv~iMk~Lr 179 (252)
T COG4604 153 DTDYVLLDEPLNNLDMKHSVQIMKILR 179 (252)
T ss_pred cCcEEEecCcccccchHHHHHHHHHHH
Confidence 122378999999997777666665554
No 34
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.8e-21 Score=157.62 Aligned_cols=149 Identities=13% Similarity=0.189 Sum_probs=108.6
Q ss_pred cceeeceeeecCCcc-ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc---ccCCC
Q 026740 76 VAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---RDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~-~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~---~~~~~ 151 (234)
++++.+++++|+..+ +++||||++++||+++|+|||||||||++|+|++++. |++|.|+++|-|....+. ..++.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-CCCceEEEeecccccChHHHhhhcce
Confidence 467889999999876 9999999999999999999999999999999999999 999999999988654321 11222
Q ss_pred Chhh--------HHHHHHHHHHHHH------------HHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAED--------RVENIRRIGEVAK------------LFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~~--------~~~~~~~~~~~~~------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
...+ .++++.+++.+.. +...+.+ ..+..++.++++...++++++..+.+ +++
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i--~vl 157 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI--LVL 157 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe--EEE
Confidence 1111 1233333222111 1111111 12244567788888999999999998 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|+|++.++-+..+.+.+-+++
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHH
Confidence 999999998888777665554
No 35
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.85 E-value=7.7e-22 Score=172.91 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=109.6
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSF 151 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~ 151 (234)
++++++|+++.|++..+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|.++.... ...+++
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-PDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEecccchHHHHhcEEE
Confidence 47889999999998999999999999999999999999999999999999998 99999999999875311 011122
Q ss_pred Chhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
.+++ ..+++.+.. .+..++...++. .+..++.+.++....+++++..+.+ +++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l--llL 162 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV--LVL 162 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE--EEE
Confidence 1111 112221111 111122222221 1233455667777899999999999 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||+..|+...++.+++.+++
T Consensus 163 DEPt~gLD~~~~~~l~~~l~~ 183 (306)
T PRK13537 163 DEPTTGLDPQARHLMWERLRS 183 (306)
T ss_pred eCCCcCCCHHHHHHHHHHHHH
Confidence 999999998888888888765
No 36
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=4.1e-21 Score=175.28 Aligned_cols=148 Identities=22% Similarity=0.265 Sum_probs=110.5
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-------
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN------- 146 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~------- 146 (234)
.++++++|++|+|+++++|+++||++.+||+++|+|.||||||||+|+|+|.++ |++|+|+++|+.+.....
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-PDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-CCCceEEECCEEccCCCHHHHHhCC
Confidence 357899999999999999999999999999999999999999999999999998 999999999998763111
Q ss_pred -----ccC--------------CCChh------hHHHHHHHHHHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhC
Q 026740 147 -----RDL--------------SFKAE------DRVENIRRIGEVAKLFADAGV-----ICIACLISPYRKDRDACRSML 196 (234)
Q Consensus 147 -----~~~--------------~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll 196 (234)
+++ +..+. ++...++ ....++...+. ..+..++...++..++++++.
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~---~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR---RARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHH---HHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh
Confidence 010 11100 0111111 22233333332 112333445677888999988
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
....+ +++|||++.|..+....||+.+++
T Consensus 162 ~~arl--lIlDEPTaaLt~~E~~~Lf~~ir~ 190 (500)
T COG1129 162 FDARV--LILDEPTAALTVKETERLFDLIRR 190 (500)
T ss_pred cCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 88887 899999999999999999998875
No 37
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.85 E-value=1.1e-21 Score=163.62 Aligned_cols=148 Identities=22% Similarity=0.219 Sum_probs=104.5
Q ss_pred ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------
Q 026740 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------- 145 (234)
Q Consensus 77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------- 145 (234)
++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-CCceeEEECCEehhhcchhHHHHH
Confidence 357899999976 689999999999999999999999999999999999998 89999999998764211
Q ss_pred -cccCCCChh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026740 146 -NRDLSFKAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 146 -~~~~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
...+++.++ ...+++... ..+...+..+++.. ...++.+.++....+++++..+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 011111111 111111110 01222233333321 1234556667778899999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+ +++|||+..++......+++.+++
T Consensus 160 ~l--llLDEP~~~LD~~~~~~l~~~l~~ 185 (218)
T cd03255 160 KI--ILADEPTGNLDSETGKEVMELLRE 185 (218)
T ss_pred CE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 98 899999999988888888777764
No 38
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.85 E-value=8.6e-22 Score=174.86 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=105.6
Q ss_pred cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026740 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------ 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------ 145 (234)
+++++|+++.|++ ..+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHH
Confidence 3678999999952 479999999999999999999999999999999999988 99999999999875321
Q ss_pred -cccCCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026740 146 -NRDLSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 146 -~~~~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
...+++.+++ ..+++... ..+...+...++.. ...++.+.+++..++++++..+
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1112222111 11111110 01122222223211 1223456677778999999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+ +++|||++.|+......+++.+++
T Consensus 160 ~i--LLlDEPts~LD~~t~~~i~~lL~~ 185 (343)
T TIGR02314 160 KV--LLCDEATSALDPATTQSILELLKE 185 (343)
T ss_pred CE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 98 899999999988888887776664
No 39
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.2e-22 Score=175.98 Aligned_cols=148 Identities=18% Similarity=0.075 Sum_probs=107.7
Q ss_pred cceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCC
Q 026740 76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFK 152 (234)
Q Consensus 76 ~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~ 152 (234)
.++++|+++.| ++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..... ..+++.
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-ITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEE
Confidence 47889999999 78889999999999999999999999999999999999988 999999999998753211 111111
Q ss_pred hhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026740 153 AED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMD 207 (234)
Q Consensus 153 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld 207 (234)
.++ ..+++.+. ..+...+...++.. ...++.+.+++...+++++..+.+ +++|
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l--lLLD 159 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV--FLFD 159 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEe
Confidence 111 11222110 01122222223211 123455667788899999999999 8999
Q ss_pred CChhhhhhcchhhHHHHHH
Q 026740 208 VPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 208 ~P~~~l~~R~~~~l~~~~~ 226 (234)
||++.|+...+..+++.++
T Consensus 160 EP~s~LD~~~r~~l~~~l~ 178 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQ 178 (356)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 9999998888888877665
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.85 E-value=2.2e-21 Score=161.50 Aligned_cols=148 Identities=15% Similarity=0.174 Sum_probs=103.8
Q ss_pred ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------cc
Q 026740 77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NR 147 (234)
Q Consensus 77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~ 147 (234)
++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... ..
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-PTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEehhhcChhHHHHHHH
Confidence 678999999964 469999999999999999999999999999999999988 89999999998764210 01
Q ss_pred cCCCChhh--------HHHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCce
Q 026740 148 DLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 148 ~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
.+++.+++ ..+++.. ...+...+...++.. ...++.+.++....+++++..+.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l- 159 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL- 159 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 11111111 1111110 001122222222211 123345566777889999999998
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++....+.+++.+++
T Consensus 160 -lllDEPt~~LD~~~~~~l~~~l~~ 183 (216)
T TIGR00960 160 -LLADEPTGNLDPELSRDIMRLFEE 183 (216)
T ss_pred -EEEeCCCCcCCHHHHHHHHHHHHH
Confidence 899999999988888888877764
No 41
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.1e-22 Score=175.31 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=108.2
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFK 152 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~ 152 (234)
++++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..... +.+++.
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-PTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEE
Confidence 47889999999998889999999999999999999999999999999999998 999999999998753211 111111
Q ss_pred hhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026740 153 AED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMD 207 (234)
Q Consensus 153 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld 207 (234)
.++ ..+++.+. ..+.......++.. ...++.+.+++...+++++..+.+ +++|
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l--LLLD 161 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV--LLFD 161 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEc
Confidence 111 11222110 01112222222211 123455667778899999999999 8999
Q ss_pred CChhhhhhcchhhHHHHHH
Q 026740 208 VPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 208 ~P~~~l~~R~~~~l~~~~~ 226 (234)
||+..|+...++.+++.++
T Consensus 162 EP~s~LD~~~r~~l~~~l~ 180 (351)
T PRK11432 162 EPLSNLDANLRRSMREKIR 180 (351)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 9999999888888877765
No 42
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.85 E-value=1e-21 Score=175.10 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=108.7
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFK 152 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~ 152 (234)
..++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..... +.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-QTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEE
Confidence 35889999999998889999999999999999999999999999999999988 999999999998753211 111111
Q ss_pred hhh--------HHHHHHHH------------HHHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026740 153 AED--------RVENIRRI------------GEVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIEVFMD 207 (234)
Q Consensus 153 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld 207 (234)
.++ ..+++.+. ..+..++...++... ..++.+.+++...+++++..+.+ +++|
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l--lLLD 159 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL--LLLD 159 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEc
Confidence 111 11222110 112222223332211 22355667778899999999998 8999
Q ss_pred CChhhhhhcchhhHHHHHHc
Q 026740 208 VPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 208 ~P~~~l~~R~~~~l~~~~~~ 227 (234)
||+..++...+..+++.+++
T Consensus 160 EP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999988888887776653
No 43
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.1e-21 Score=163.70 Aligned_cols=148 Identities=19% Similarity=0.172 Sum_probs=104.9
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------cccC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRDL 149 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~~ 149 (234)
++++|+++.|++..+++|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcce
Confidence 357899999988889999999999999999999999999999999999998 89999999998764210 0111
Q ss_pred CCChhh--------HHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026740 150 SFKAED--------RVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
++.+++ ..+++... ..+...+...++.. ...++.+.++....+++++..+.+
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l-- 157 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL-- 157 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence 121111 11111110 01112222233211 122345666777889999999988
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++......+++.+++
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~ 181 (235)
T cd03261 158 LLYDEPTAGLDPIASGVIDDLIRS 181 (235)
T ss_pred EEecCCcccCCHHHHHHHHHHHHH
Confidence 899999999988888888777764
No 44
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.85 E-value=3.9e-21 Score=170.65 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=110.0
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSF 151 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~ 151 (234)
.+++++|+++.|++..+++|+||+|++|++++|+||||||||||+++|+|++. |++|+|.++|.++.... ...+++
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-PDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCceEEEECCEECCcchHHHhccEEE
Confidence 47999999999999999999999999999999999999999999999999998 99999999998875311 111122
Q ss_pred Chhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
.+++ ..+++.... .+..++..+++. .+..++.+.++....+++++..+.+ +++
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l--LiL 196 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL--LIL 196 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 1111 112211110 011122222221 1233456667778899999999998 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||+..|+...+..+++.+++
T Consensus 197 DEPt~gLD~~~r~~l~~~l~~ 217 (340)
T PRK13536 197 DEPTTGLDPHARHLIWERLRS 217 (340)
T ss_pred ECCCCCCCHHHHHHHHHHHHH
Confidence 999999999888888888865
No 45
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.84 E-value=1.5e-21 Score=175.21 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=109.4
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCC
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSF 151 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~ 151 (234)
.++++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..... +.+++
T Consensus 12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-PDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEE
Confidence 457899999999998889999999999999999999999999999999999998 999999999998753211 11111
Q ss_pred Chh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
..+ ...+++.+. ..+..++...++.. ...++.+.+++...+++++..+.+ +++
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l--lLL 168 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV--LLL 168 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 111 111222110 01122222222221 122345667778899999999998 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||+..|+...+..+++.+++
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~ 189 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKA 189 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHH
Confidence 999999998888888877753
No 46
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.84 E-value=3.7e-21 Score=159.88 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=105.1
Q ss_pred ceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026740 77 AKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD 148 (234)
Q Consensus 77 ~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~ 148 (234)
++++|+++.| ++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++.... ...
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhh
Confidence 5789999999 46789999999999999999999999999999999999988 89999999998774310 011
Q ss_pred CCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026740 149 LSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 149 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
+++.+++ ..+++... ..+...+..+++.. ...++.+.++....+++++..+.+
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-- 158 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL-- 158 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE--
Confidence 1221111 11111110 01112222222211 123445566777889999999988
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++......+++.+++
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 899999999998888888887764
No 47
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.5e-21 Score=163.13 Aligned_cols=150 Identities=22% Similarity=0.250 Sum_probs=105.8
Q ss_pred ccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----
Q 026740 75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----- 145 (234)
++++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|+++....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-PTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCCHHHHH
Confidence 46889999999964 579999999999999999999999999999999999988 89999999998764211
Q ss_pred ---cccCCCChhh--------HHHHHHHH------------HHHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCC
Q 026740 146 ---NRDLSFKAED--------RVENIRRI------------GEVAKLFADAGVICI-----ACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 146 ---~~~~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~ 197 (234)
...+++.+++ ..+++... ..+...+...++... ..++.+.++....++.++.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0111111111 11111110 011222333333211 2234456667788899999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||+..|+......+++.+++
T Consensus 163 ~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 190 (233)
T PRK11629 163 NPRL--VLADEPTGNLDARNADSIFQLLGE 190 (233)
T ss_pred CCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9988 899999999988888888777654
No 48
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.2e-21 Score=158.30 Aligned_cols=78 Identities=26% Similarity=0.260 Sum_probs=69.3
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
+++.+|++++..++.+++++||++++||+++|+||||||||||+|.|+|.+. |++|++.++|.++.. +.+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-p~~G~v~~~g~~l~~-------~~~~~ 72 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-PDSGEVTLNGVPLNS-------WPPEE 72 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-CCCCeEeeCCcChhh-------CCHHH
Confidence 4678999999999999999999999999999999999999999999999998 999999999999874 55555
Q ss_pred HHHHHH
Q 026740 156 RVENIR 161 (234)
Q Consensus 156 ~~~~~~ 161 (234)
++..+.
T Consensus 73 lA~~ra 78 (259)
T COG4559 73 LARHRA 78 (259)
T ss_pred HHHHhh
Confidence 554433
No 49
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.1e-20 Score=156.94 Aligned_cols=148 Identities=21% Similarity=0.219 Sum_probs=105.5
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~ 154 (234)
++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++.... ...+++.++
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-PDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 357899999988889999999999999999999999999999999999988 89999999998864211 011122211
Q ss_pred hH--------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026740 155 DR--------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (234)
Q Consensus 155 ~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P 209 (234)
+. .+++... ..+...+..+++.. ...++.+.++....+++++..+.+ +++|||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~--lllDEP 157 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL--LLLDEP 157 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence 11 1111100 01112222223211 123455667777889999999988 899999
Q ss_pred hhhhhhcchhhHHHHHHc
Q 026740 210 LQVCEARDPKGLYKLARE 227 (234)
Q Consensus 210 ~~~l~~R~~~~l~~~~~~ 227 (234)
+..++....+.+++.+++
T Consensus 158 t~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 158 LSALDAKLREELREELKE 175 (213)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999998888888887764
No 50
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=5.3e-21 Score=161.01 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=104.6
Q ss_pred ceeeceeeecCCc----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------
Q 026740 77 AKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------- 145 (234)
Q Consensus 77 ~~~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------- 145 (234)
++++|+++.|++. ++++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHH
Confidence 6789999999876 89999999999999999999999999999999999998 89999999998864210
Q ss_pred cccCCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCC
Q 026740 146 NRDLSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 146 ~~~~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
...+++.+++ ..+++... ..+...+...++.. ...++.+.++....+++++..+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0111111111 11111110 01111222222211 12234556677788899999998
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||+..++......+++.+++
T Consensus 161 l--llLDEP~~~LD~~~~~~l~~~l~~ 185 (233)
T cd03258 161 V--LLCDEATSALDPETTQSILALLRD 185 (233)
T ss_pred E--EEecCCCCcCCHHHHHHHHHHHHH
Confidence 8 899999999988888888877764
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.8e-21 Score=171.88 Aligned_cols=149 Identities=16% Similarity=0.196 Sum_probs=106.4
Q ss_pred cceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026740 76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------ 145 (234)
Q Consensus 76 ~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------ 145 (234)
+++++|++++|+ .+.+++|+||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++....
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-PTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHH
Confidence 367899999997 4679999999999999999999999999999999999998 89999999998875310
Q ss_pred -cccCCCChh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026740 146 -NRDLSFKAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 146 -~~~~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
...+++.++ ...+++... ..+...+...++.. ...++.+.++....+++++..+
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 011111111 111111110 01122233333221 1234556677778899999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+ +++|||+..|+......+++.+++
T Consensus 160 ~i--LlLDEPts~LD~~~~~~l~~~L~~ 185 (343)
T PRK11153 160 KV--LLCDEATSALDPATTRSILELLKD 185 (343)
T ss_pred CE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 98 899999999998888888887764
No 52
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.84 E-value=4.6e-21 Score=160.08 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=103.5
Q ss_pred ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------
Q 026740 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------- 145 (234)
Q Consensus 77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------- 145 (234)
++++|+++.|++ .++++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-PTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcCHhHHHHH
Confidence 578899999964 579999999999999999999999999999999999988 89999999998764210
Q ss_pred c-ccCCCChhh--------HHHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026740 146 N-RDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 146 ~-~~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
. ..+++.+++ ..+++.. ...+...+..+++.. ...++.+.++....++.++..+
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 0 111111111 1111110 001112222233211 1234555667778899999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
.+ +++|||+..|+......+++.++
T Consensus 161 ~i--lllDEPt~~LD~~~~~~l~~~l~ 185 (221)
T TIGR02211 161 SL--VLADEPTGNLDNNNAKIIFDLML 185 (221)
T ss_pred CE--EEEeCCCCcCCHHHHHHHHHHHH
Confidence 98 89999999998888888887776
No 53
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.84 E-value=1.2e-21 Score=177.14 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=105.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~ 151 (234)
+++++|+++.|+++.+++++||++++||+++|+||||||||||+|+|+|+++ |.+|+|+++|+++.... ...+++
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 6889999999999999999999999999999999999999999999999998 99999999998875311 011111
Q ss_pred ChhhH--------HHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026740 152 KAEDR--------VENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 152 ~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
.+++. .+++.. ...+...+...++. ....++.+.+++..++++++..+.+
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i- 160 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV- 160 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE-
Confidence 11110 011000 00111122222221 1233455667777899999999998
Q ss_pred EEEEeCChhhhhhcchhhHHHHHH
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|||+..|+......+++.++
T Consensus 161 -LLLDEPtsgLD~~~~~~l~~lL~ 183 (402)
T PRK09536 161 -LLLDEPTASLDINHQVRTLELVR 183 (402)
T ss_pred -EEEECCcccCCHHHHHHHHHHHH
Confidence 89999999998887777776655
No 54
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=5.8e-22 Score=160.27 Aligned_cols=149 Identities=14% Similarity=0.217 Sum_probs=108.5
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----ccCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-----~~~~ 150 (234)
.+.++|+.++|+.+++++++||++++||+++++|||||||||.+.++.|+.. |++|.|.+++.|++..+- ..++
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-PDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-cCCceEEECCcccccCChHHHhhcCcc
Confidence 5778999999999999999999999999999999999999999999999998 999999999999986431 1245
Q ss_pred CChhhHH--------HHHHHHH--------------HHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceE
Q 026740 151 FKAEDRV--------ENIRRIG--------------EVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 151 ~~~~~~~--------~~~~~~~--------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
|-+++.. +++..+. ....++..+.+..+ ..++.+.+.+.++|+++...+.+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f-- 160 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF-- 160 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE--
Confidence 5555432 1111111 11123333332211 33455667778999999998888
Q ss_pred EEEeCChhhhhhcch---hhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDP---KGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~---~~l~~~~~~ 227 (234)
+++|+|+...+.-.. +.+-+.++.
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~ 187 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKD 187 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHh
Confidence 899999999865443 444444444
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6.3e-21 Score=159.30 Aligned_cols=148 Identities=15% Similarity=0.236 Sum_probs=104.0
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA 153 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~ 153 (234)
++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.... ...+++.+
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-PTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecCcChHHHhhcEEEec
Confidence 367899999998899999999999999999999999999999999999988 89999999997763210 00111111
Q ss_pred hh--------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 154 ED--------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 154 ~~--------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
++ ..+++... ..+...+..+++. ....++.+.++....+++++..+.+ +++||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l--lllDE 157 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV--LFLDE 157 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 11 11111100 0111122222221 1123455666777889999999998 89999
Q ss_pred ChhhhhhcchhhHHHHHHc
Q 026740 209 PLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~~ 227 (234)
|+..|+....+.+++.+++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~ 176 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEK 176 (220)
T ss_pred CccCCCHHHHHHHHHHHHH
Confidence 9999988888888877754
No 56
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.3e-21 Score=176.82 Aligned_cols=172 Identities=16% Similarity=0.160 Sum_probs=119.0
Q ss_pred cCccccccccccccccccccccccceeeccccccccccccCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCC
Q 026740 33 SGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSG 112 (234)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nG 112 (234)
..+++++|+|+.++.++.+.... .++..++...|+...+++++||++++||+++|+||||
T Consensus 5 i~~~~~~k~fg~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NG 64 (400)
T PRK10070 5 LEIKNLYKIFGEHPQRAFKYIEQ--------------------GLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSG 64 (400)
T ss_pred EEEeeeEEecCCChHHHHHHHhc--------------------cccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCC
Confidence 46788999999977655443322 1333445667777789999999999999999999999
Q ss_pred CcHHHHHHHHHhhcccCCccEEEEcCccccccc--------cccCCCChh--------hHHHHHHHH------------H
Q 026740 113 SGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRDLSFKAE--------DRVENIRRI------------G 164 (234)
Q Consensus 113 sGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~~~~~~~--------~~~~~~~~~------------~ 164 (234)
||||||+|+|+|+++ |++|+|+++|+++.... ...+++.++ ...+++... .
T Consensus 65 sGKSTLLr~I~Gl~~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~ 143 (400)
T PRK10070 65 SGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE 143 (400)
T ss_pred chHHHHHHHHHcCCC-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999998 99999999998875311 011122111 111211110 1
Q ss_pred HHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 165 EVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 165 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+...+...++.. ...++.+.++....+++++..+.+ +++|||+..|+....+.+++.+++
T Consensus 144 ~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i--LLLDEPts~LD~~~r~~l~~~L~~ 209 (400)
T PRK10070 144 KALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI--LLMDEAFSALDPLIRTEMQDELVK 209 (400)
T ss_pred HHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCHHHHHHHHHHHHH
Confidence 1222233333321 123455667778889999999998 899999999998888888877753
No 57
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.84 E-value=8.3e-21 Score=157.68 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=103.3
Q ss_pred ceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026740 77 AKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD 148 (234)
Q Consensus 77 ~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~ 148 (234)
++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-PTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHHHh
Confidence 357899999964 679999999999999999999999999999999999988 89999999998764210 001
Q ss_pred CCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026740 149 LSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 149 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
+++.+++ ..+++... ..+...+...++.. ...++.+.++....+++++..+.+
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-- 157 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI-- 157 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE--
Confidence 1111111 11111100 01112222222211 122345566677889999999998
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++....+.+++.+++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~ 181 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKK 181 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHH
Confidence 899999999998888888887764
No 58
>PRK10908 cell division protein FtsE; Provisional
Probab=99.83 E-value=9e-21 Score=158.59 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=103.3
Q ss_pred ceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026740 77 AKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD 148 (234)
Q Consensus 77 ~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~ 148 (234)
++++|+++.| ++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-PSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCChhHHHHHHhh
Confidence 5788999999 67789999999999999999999999999999999999998 89999999998764210 011
Q ss_pred CCCChhh--------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceE
Q 026740 149 LSFKAED--------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 149 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
+++.+++ ..+++... ..+...+...++. ....++.+.++....+++++..+.+
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-- 158 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV-- 158 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE--
Confidence 1111111 11111110 0111122222221 1123345566777889999999988
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+....+.+++.+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~ 182 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEE 182 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHH
Confidence 899999999988777777776653
No 59
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.83 E-value=5.6e-21 Score=167.21 Aligned_cols=149 Identities=14% Similarity=0.157 Sum_probs=106.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFK 152 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~ 152 (234)
+++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...+++.
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-PDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcccHHHHhhcEEEE
Confidence 6789999999998899999999999999999999999999999999999998 89999999998763210 0111111
Q ss_pred hhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026740 153 AED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMD 207 (234)
Q Consensus 153 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld 207 (234)
+++ ..+++.... .+..++...++. ....++.+.++....+++++..+.+ +++|
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLD 160 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL--LILD 160 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEe
Confidence 111 111111100 111122222221 1223455667777889999999998 8999
Q ss_pred CChhhhhhcchhhHHHHHHc
Q 026740 208 VPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 208 ~P~~~l~~R~~~~l~~~~~~ 227 (234)
||+..|+......+++.+++
T Consensus 161 EPt~gLD~~~~~~l~~~l~~ 180 (303)
T TIGR01288 161 EPTTGLDPHARHLIWERLRS 180 (303)
T ss_pred CCCcCCCHHHHHHHHHHHHH
Confidence 99999988888888887764
No 60
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.83 E-value=8.8e-21 Score=158.26 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=103.7
Q ss_pred ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCC
Q 026740 77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSF 151 (234)
Q Consensus 77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~ 151 (234)
++++|+++.|++ .++++++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|.++.... ...+++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccchHHHhhhEEE
Confidence 357899999986 789999999999999999999999999999999999988 89999999998764210 001111
Q ss_pred Chh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
.++ ...+++... ..+...+...++.. ...++.+.++....+++++..+.+ +++
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lll 157 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV--LLL 157 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 111 111111110 01112222222211 123345566677889999999988 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||+..++......+++.+++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 999999988888888777663
No 61
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2e-20 Score=156.26 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=105.3
Q ss_pred ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCC
Q 026740 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK 152 (234)
Q Consensus 77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~ 152 (234)
++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++... ...+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~-~~~i~~v 78 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTGP-GPDRGYV 78 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccc-cCcEEEE
Confidence 357899999987 789999999999999999999999999999999999988 8999999999876421 1111111
Q ss_pred hh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026740 153 AE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMD 207 (234)
Q Consensus 153 ~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld 207 (234)
++ ...+++... ..+...+...++. ....++.+.++....+++++..+.+ +++|
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l--llLD 156 (220)
T cd03293 79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV--LLLD 156 (220)
T ss_pred ecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEC
Confidence 11 111111110 0112222333321 1233455667778889999999988 8999
Q ss_pred CChhhhhhcchhhHHHHHHc
Q 026740 208 VPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 208 ~P~~~l~~R~~~~l~~~~~~ 227 (234)
||+..++......+++.+++
T Consensus 157 EPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 157 EPFSALDALTREQLQEELLD 176 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 99999999888888887764
No 62
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.83 E-value=7.7e-21 Score=159.51 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=105.0
Q ss_pred ccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----
Q 026740 75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----- 145 (234)
++++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-GSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeeEEECCEEcccCCHHHHH
Confidence 46889999999975 359999999999999999999999999999999999988 89999999998764210
Q ss_pred ---cccCCCChhh--------HHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026740 146 ---NRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 146 ---~~~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~ 197 (234)
...+++.+++ ..+++.. ...+...+...++. ....++.+.++....+++++.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0111111111 1111110 00111222222221 112345556677788999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||+..|+......+++.+++
T Consensus 164 ~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 164 RPDV--LFADEPTGNLDRQTGDKIADLLFS 191 (228)
T ss_pred CCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9988 899999999988888888887753
No 63
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.83 E-value=7e-21 Score=157.23 Aligned_cols=146 Identities=21% Similarity=0.174 Sum_probs=102.3
Q ss_pred eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--------ccccCC
Q 026740 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLS 150 (234)
Q Consensus 79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~--------~~~~~~ 150 (234)
++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... ....++
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-FDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 3688999988889999999999999999999999999999999999988 8999999999885310 001111
Q ss_pred CChhh--------HHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEE
Q 026740 151 FKAED--------RVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVF 205 (234)
Q Consensus 151 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ 205 (234)
+..++ ..+++.. ...+...+...++. ....++.+.++....+++++..+.+ ++
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l--ll 157 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL--IL 157 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EE
Confidence 11111 1111110 00112222222221 1123445566677889999999998 89
Q ss_pred EeCChhhhhhcchhhHHHHHHc
Q 026740 206 MDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 206 ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+|||+..++....+.+++.+++
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~ 179 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLE 179 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHH
Confidence 9999999988888888877764
No 64
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.83 E-value=1.3e-20 Score=158.18 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=106.4
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++++|+++.|++.++++++||++++||+++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEcCcCCHHHHHhcc
Confidence 347889999999998889999999999999999999999999999999999887 89999999998764210 0011
Q ss_pred CCChh-------hHHHHHHHH----------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 150 SFKAE-------DRVENIRRI----------GEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 150 ~~~~~-------~~~~~~~~~----------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
++..+ ...+++... ..+...+...++. ....++.+.++....+++++..+.+ +++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lll 161 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV--LLL 161 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 11111 111211110 0111222222221 1123345566677889999999998 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|+|+..|+....+.+++.+++
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 162 DEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred eCCcccCCHHHHHHHHHHHHH
Confidence 999999988887777766553
No 65
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.83 E-value=2.4e-21 Score=161.49 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=103.9
Q ss_pred ceeeceeeecCCc----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccC
Q 026740 77 AKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDL 149 (234)
Q Consensus 77 ~~~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~ 149 (234)
++++|+++.|++. ++++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ...+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-PDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEEcccCHHHHHhhE
Confidence 5788999999876 79999999999999999999999999999999999988 89999999998764210 0011
Q ss_pred CCChh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 150 SFKAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 150 ~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
++.++ ...+++... ..+...+...++.. ...++.+.++....+++++..+.+ +
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i--l 158 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV--L 158 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE--E
Confidence 11111 111111110 01111222222211 122345566677888999999988 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..++......+++.+++
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHH
Confidence 99999999998888888877764
No 66
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.83 E-value=2.7e-20 Score=154.61 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=105.0
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~~ 154 (234)
++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++..... ..+++.++
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEec
Confidence 357899999988889999999999999999999999999999999999988 899999999987642110 11111111
Q ss_pred h--------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026740 155 D--------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (234)
Q Consensus 155 ~--------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P 209 (234)
+ ..+++... ..+...+...++. ....++.+.++....++.++..+.+ +++|||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l--lllDEP 157 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV--FLMDEP 157 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence 1 11111100 0111222222221 1123455666777888999999988 899999
Q ss_pred hhhhhhcchhhHHHHHHc
Q 026740 210 LQVCEARDPKGLYKLARE 227 (234)
Q Consensus 210 ~~~l~~R~~~~l~~~~~~ 227 (234)
+..++......+++.+++
T Consensus 158 t~~LD~~~~~~l~~~l~~ 175 (213)
T cd03301 158 LSNLDAKLRVQMRAELKR 175 (213)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999998888888887764
No 67
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.83 E-value=2.9e-20 Score=155.24 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=103.9
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSF 151 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~ 151 (234)
++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 357899999988889999999999999999999999999999999999998 89999999998764211 011122
Q ss_pred Chhh--------HHHHHHHH----------HHHHHHHHhc-Cc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026740 152 KAED--------RVENIRRI----------GEVAKLFADA-GV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMD 207 (234)
Q Consensus 152 ~~~~--------~~~~~~~~----------~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld 207 (234)
.+++ ..+++... ..+...+... .+ .....++.+.++....+++++..+.+ +++|
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllD 157 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL--LLLD 157 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEC
Confidence 1111 11111100 0011111111 11 11123445566777889999999988 8999
Q ss_pred CChhhhhhcchhhHHHHHHc
Q 026740 208 VPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 208 ~P~~~l~~R~~~~l~~~~~~ 227 (234)
||+..|+......+++.+++
T Consensus 158 EPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999888888888764
No 68
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.83 E-value=4.3e-21 Score=171.60 Aligned_cols=149 Identities=18% Similarity=0.160 Sum_probs=107.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc--cEEEEcCcccccccc--ccCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK--LTYILDGDNCRHGLN--RDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~--G~i~~~g~~v~~~~~--~~~~~ 151 (234)
-++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++ |+|.++|+++..... +.+++
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 3678999999998889999999999999999999999999999999999988 999 999999998753211 11111
Q ss_pred Chhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
..++ ..+++.+. ..+..++...++.. ...++.+.+++...+++++..+.+ +++
T Consensus 84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l--lLL 161 (362)
T TIGR03258 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV--LLL 161 (362)
T ss_pred EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 1111 11222110 01222222222211 123355667778899999999999 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||+..|+...++.+++.+++
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~ 182 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAA 182 (362)
T ss_pred cCccccCCHHHHHHHHHHHHH
Confidence 999999998888888887653
No 69
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=1.6e-20 Score=149.96 Aligned_cols=146 Identities=17% Similarity=0.178 Sum_probs=106.8
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
+.++++|+.++||...+|+++|++..+|+++.|||-|||||||++|||+-+.. |+.|.|.++|+.++.....+-...+.
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-CCCceEEECCeEEEeeeCCCCCeeeC
Confidence 46788999999999999999999999999999999999999999999998777 99999999999987443333223333
Q ss_pred hHHHHHHHHHHHHHHHHhcCceEEEec-------------------------------------------CcccHHHHHH
Q 026740 155 DRVENIRRIGEVAKLFADAGVICIACL-------------------------------------------ISPYRKDRDA 191 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~ 191 (234)
++++.-+.-.+.+++||.+++....+. +.+..++..+
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aI 163 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAI 163 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHH
Confidence 443333333478899999886422110 1122334456
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHH
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~ 223 (234)
++++.-++.+ .++|+|++.|+..-..+..+
T Consensus 164 ARaLameP~v--mLFDEPTSALDPElVgEVLk 193 (256)
T COG4598 164 ARALAMEPEV--MLFDEPTSALDPELVGEVLK 193 (256)
T ss_pred HHHHhcCCce--EeecCCcccCCHHHHHHHHH
Confidence 6776666666 78999999995554444333
No 70
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.83 E-value=1.7e-20 Score=147.23 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=97.3
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhH
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~ 156 (234)
++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|+++|+.. +++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~-------i~~~~~-- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVK-------IGYFEQ-- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEE-------EEEEcc--
Confidence 357899999987789999999999999999999999999999999999998 8999999988521 122222
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++.+..+....+++++..+.+ +++|||+..++......+++.+++
T Consensus 71 ------------------------lS~G~~~rv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 71 ------------------------LSGGEKMRLALAKLLLENPNL--LLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred ------------------------CCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 445566677789999999988 899999999999888888888875
No 71
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.7e-21 Score=172.22 Aligned_cols=149 Identities=19% Similarity=0.163 Sum_probs=107.0
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCC
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSF 151 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~ 151 (234)
.++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+.+ |++|+|+++|+++..... +.+++
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-PTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEE
Confidence 347899999999998889999999999999999999999999999999999988 999999999998753211 11111
Q ss_pred Chhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
..++ ..+++.+. ..+...+...++.. ...++.+.+++...+++++..+.+ +++
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l--LLL 173 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL--LLL 173 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 1111 11222110 01122222223221 123455667778899999999999 899
Q ss_pred eCChhhhhhcchhhHHHHH
Q 026740 207 DVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~ 225 (234)
|||+..|+...+..+++.+
T Consensus 174 DEP~s~LD~~~r~~l~~~l 192 (377)
T PRK11607 174 DEPMGALDKKLRDRMQLEV 192 (377)
T ss_pred eCCcccCCHHHHHHHHHHH
Confidence 9999999888887776544
No 72
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.83 E-value=1e-20 Score=156.86 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=103.3
Q ss_pred eeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCCC
Q 026740 79 STNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFK 152 (234)
Q Consensus 79 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~~ 152 (234)
++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...+++.
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEcccCCHHHHHhhceEE
Confidence 5789999987 789999999999999999999999999999999999988 89999999998764210 0112222
Q ss_pred hhh---------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 153 AED---------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 153 ~~~---------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
+++ ..+++... ..+...+..+++. ....++.+.++....+++++..+.+ +++
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lll 158 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI--LLL 158 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence 111 11111110 0111122222221 1123455667777889999999988 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||++.|+....+.+++.+++
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHH
Confidence 999999988888888877753
No 73
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.83 E-value=1.1e-20 Score=156.45 Aligned_cols=148 Identities=17% Similarity=0.199 Sum_probs=103.5
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--ccccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~--~~~~~~~~~~ 154 (234)
++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++... ....+++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecC
Confidence 357899999988899999999999999999999999999999999999988 8999999999876421 0001111111
Q ss_pred --------hHHHHHHHH--------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026740 155 --------DRVENIRRI--------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (234)
Q Consensus 155 --------~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l 213 (234)
...+++... ..+...+...++.. ...++.+.++....++.++..+.+ +++|||+..|
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~L 157 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL--LILDEPTNGL 157 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCcccC
Confidence 111111110 01111222222211 122344556667788999999988 8999999999
Q ss_pred hhcchhhHHHHHHc
Q 026740 214 EARDPKGLYKLARE 227 (234)
Q Consensus 214 ~~R~~~~l~~~~~~ 227 (234)
+....+.+++.+++
T Consensus 158 D~~~~~~l~~~l~~ 171 (208)
T cd03268 158 DPDGIKELRELILS 171 (208)
T ss_pred CHHHHHHHHHHHHH
Confidence 98888888877764
No 74
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.7e-20 Score=155.62 Aligned_cols=148 Identities=13% Similarity=0.194 Sum_probs=103.4
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh--
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-- 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~-- 154 (234)
++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|+++.......+++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-PDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCCchhHHHHccEEEeccCC
Confidence 357899999988889999999999999999999999999999999999988 89999999998763210000111110
Q ss_pred ------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026740 155 ------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211 (234)
Q Consensus 155 ------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~ 211 (234)
...+++... ..+...+...++. ....++.+.++....++.++..+.+ +++|||+.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~--lllDEP~~ 157 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL--LILDEPFS 157 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence 111111110 0111222222221 1122345566667788999999988 89999999
Q ss_pred hhhhcchhhHHHHHHc
Q 026740 212 VCEARDPKGLYKLARE 227 (234)
Q Consensus 212 ~l~~R~~~~l~~~~~~ 227 (234)
.++......+++.+++
T Consensus 158 ~LD~~~~~~~~~~l~~ 173 (210)
T cd03269 158 GLDPVNVELLKDVIRE 173 (210)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9988888888777764
No 75
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.83 E-value=1.1e-20 Score=165.24 Aligned_cols=149 Identities=16% Similarity=0.239 Sum_probs=107.6
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFK 152 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~ 152 (234)
.++++|++++|++..+++|+||++++||+++|+||||||||||+|+|+|++. |++|+|.++|.++.... ...+++.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-PDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccChHHHHhceEEe
Confidence 3678999999998999999999999999999999999999999999999988 99999999998874311 0111111
Q ss_pred hhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026740 153 AED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMD 207 (234)
Q Consensus 153 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld 207 (234)
+++ ..+++.... .+...+..+++. ....++.+.++....+++++..+.+ +++|
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--liLD 158 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV--LILD 158 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEc
Confidence 111 112111100 111222222321 1123455667777889999999998 8999
Q ss_pred CChhhhhhcchhhHHHHHHc
Q 026740 208 VPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 208 ~P~~~l~~R~~~~l~~~~~~ 227 (234)
+|+..|+....+.+++.+++
T Consensus 159 EPt~gLD~~~~~~l~~~l~~ 178 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKN 178 (301)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999998888888887765
No 76
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=3.3e-21 Score=156.73 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=100.7
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
++++++|+++.| +++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. +.+.
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-------~~~~ 70 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTR-------RSPR 70 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCc-------cCHH
Confidence 368889999998 8999999999999999999999999999999999998 899999999988753 2111
Q ss_pred hHHHHHHHHHHHHHHHHhc---------CceEEE----ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhH
Q 026740 155 DRVENIRRIGEVAKLFADA---------GVICIA----CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l 221 (234)
... .+ .+++++|+. .+.... .++.+.++....+++++..+.+ +++|||+..++....+.+
T Consensus 71 ~~~--~~---~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~l--lllDEP~~~LD~~~~~~l 143 (182)
T cd03215 71 DAI--RA---GIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRV--LILDEPTRGVDVGAKAEI 143 (182)
T ss_pred HHH--hC---CeEEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCE--EEECCCCcCCCHHHHHHH
Confidence 100 00 122222221 000000 0445566677889999999998 899999999998888888
Q ss_pred HHHHHc
Q 026740 222 YKLARE 227 (234)
Q Consensus 222 ~~~~~~ 227 (234)
++.+++
T Consensus 144 ~~~l~~ 149 (182)
T cd03215 144 YRLIRE 149 (182)
T ss_pred HHHHHH
Confidence 887764
No 77
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=1.1e-19 Score=150.15 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=105.7
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCC---
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLS--- 150 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~--- 150 (234)
++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ...++
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeC
Confidence 678999999998889999999999999999999999999999999999988 89999999998764210 00011
Q ss_pred ----CCh-hhHHHHHHHH---------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026740 151 ----FKA-EDRVENIRRI---------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211 (234)
Q Consensus 151 ----~~~-~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~ 211 (234)
+.+ ....+++... ..+...+...++. ....++.+.++....+++++..+.+ +++|||+.
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~ 158 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL--WILDEPFT 158 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence 100 0111111110 0112222222321 1123455566777889999999998 89999999
Q ss_pred hhhhcchhhHHHHHHc
Q 026740 212 VCEARDPKGLYKLARE 227 (234)
Q Consensus 212 ~l~~R~~~~l~~~~~~ 227 (234)
.++......+++.+++
T Consensus 159 ~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 159 AIDKQGVARLEALLAQ 174 (204)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9998888888887764
No 78
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.83 E-value=4.7e-20 Score=152.45 Aligned_cols=147 Identities=19% Similarity=0.264 Sum_probs=103.8
Q ss_pred eeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-cccCCCChhh
Q 026740 78 KSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NRDLSFKAED 155 (234)
Q Consensus 78 ~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-~~~~~~~~~~ 155 (234)
+++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...+++.+++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-ESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEhhhHHhhcceEEEecC
Confidence 35789999987 789999999999999999999999999999999999988 99999999998763210 0112222221
Q ss_pred ---------HHHHHHHH--------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026740 156 ---------RVENIRRI--------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (234)
Q Consensus 156 ---------~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l 213 (234)
..+++... ..+...+...++.. ...++.+.++....+++++..+.+ +++|||+..+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~L 157 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL--LIFDEPTSGL 157 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccC
Confidence 11111110 01122223333221 122345566777889999999988 8999999999
Q ss_pred hhcchhhHHHHHHc
Q 026740 214 EARDPKGLYKLARE 227 (234)
Q Consensus 214 ~~R~~~~l~~~~~~ 227 (234)
+....+.+++.+++
T Consensus 158 D~~~~~~l~~~l~~ 171 (205)
T cd03226 158 DYKNMERVGELIRE 171 (205)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888777754
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=4e-20 Score=156.22 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=104.3
Q ss_pred ceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026740 77 AKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD 148 (234)
Q Consensus 77 ~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~ 148 (234)
++++|+++.|++ ..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEeccccCHhHHHHHHhc
Confidence 357899999987 789999999999999999999999999999999999988 89999999998764211 011
Q ss_pred CCCChhh--------HHHHHHH--------------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHh
Q 026740 149 LSFKAED--------RVENIRR--------------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 149 ~~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l 195 (234)
+++.+++ ..+++.. ...+...+...++. ....++.+.++....++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 1111111 1111110 00111122222221 1123455666777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..++......+++.+++
T Consensus 160 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 160 MQQPKL--ILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred hcCCCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888887764
No 80
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.83 E-value=3.7e-21 Score=158.02 Aligned_cols=137 Identities=19% Similarity=0.174 Sum_probs=103.5
Q ss_pred cceeeceeeecCC------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCcccccc-cc
Q 026740 76 VAKSTNILWHKNS------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHG-LN 146 (234)
Q Consensus 76 ~~~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~-~~ 146 (234)
.++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|++ + |.+|+|.++|+++... ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-GVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEeCchHhhh
Confidence 4678999999975 67999999999999999999999999999999999998 7 8999999999987421 00
Q ss_pred ccCCCChhh--------HHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 147 RDLSFKAED--------RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 147 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
..+++.+++ ..+++.. .... ..++.+.++....+++++..+.+ +++|||+..++....
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~-------~~~~-----~~LS~G~~qrv~laral~~~p~i--lllDEP~~~LD~~~~ 147 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMF-------AAKL-----RGLSGGERKRVSIALELVSNPSL--LFLDEPTSGLDSSSA 147 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHH-------HHHh-----ccCCHHHHHHHHHHHHHHcCCCE--EEEeCCCcCCCHHHH
Confidence 111222111 1111100 0000 04555667777889999999988 899999999999988
Q ss_pred hhHHHHHHc
Q 026740 219 KGLYKLARE 227 (234)
Q Consensus 219 ~~l~~~~~~ 227 (234)
+.+++.+++
T Consensus 148 ~~l~~~l~~ 156 (194)
T cd03213 148 LQVMSLLRR 156 (194)
T ss_pred HHHHHHHHH
Confidence 888888765
No 81
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=6.9e-20 Score=153.95 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=103.4
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSF 151 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~ 151 (234)
++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++.... ...+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 357899999998889999999999999999999999999999999999998 89999999998764210 011112
Q ss_pred Chhh--------HHHHHHHHH---------HHHHHHHhcC------ceEEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 152 KAED--------RVENIRRIG---------EVAKLFADAG------VICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 152 ~~~~--------~~~~~~~~~---------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
.+++ ..+++.... .......... ......++.+.++....++.++..+.+ +++||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i--lllDE 157 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL--LLLDE 157 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEecC
Confidence 1111 111111000 0011111111 111123345566677888999999988 89999
Q ss_pred ChhhhhhcchhhHHHHHHc
Q 026740 209 PLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~~ 227 (234)
|+..|+....+.+++.+++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999998888888887764
No 82
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.5e-21 Score=171.01 Aligned_cols=149 Identities=16% Similarity=0.097 Sum_probs=107.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCCh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~ 153 (234)
.++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+++..
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-ITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHhHCCEEEEe
Confidence 4788999999998889999999999999999999999999999999999998 99999999998874311 01111111
Q ss_pred hh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 154 ED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 154 ~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
++ ..+++... ..+...+...++.. ...++.+.++....+++++..+.+ +++||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l--LLLDE 159 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDE 159 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence 11 11111110 01222223333321 123455667778899999999998 89999
Q ss_pred ChhhhhhcchhhHHHHHHc
Q 026740 209 PLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~~ 227 (234)
|+..|+...++.+++.+++
T Consensus 160 Pts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 160 PLSNLDAALRVQMRIEISR 178 (369)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999988888877776653
No 83
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=1.1e-20 Score=155.76 Aligned_cols=148 Identities=15% Similarity=0.167 Sum_probs=105.0
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA 153 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~ 153 (234)
++++|+++.|++.++++++||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++.... ...+++.+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeeEEECCCccccCHHHHHhheEEec
Confidence 678999999988889999999999999999999999999999999999988 89999999998764210 00111111
Q ss_pred h--------hHHHHHHHH-------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026740 154 E--------DRVENIRRI-------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (234)
Q Consensus 154 ~--------~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l 213 (234)
+ ...+++... ..+...+...+.. ....++.+.++....+++++..+.+ +++|+|+..+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~--lilDEP~~~L 158 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL--WLLDEPLVAL 158 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCccc
Confidence 0 111111110 0111122222211 1123345566677889999999988 8999999999
Q ss_pred hhcchhhHHHHHHc
Q 026740 214 EARDPKGLYKLARE 227 (234)
Q Consensus 214 ~~R~~~~l~~~~~~ 227 (234)
+......+++.+++
T Consensus 159 D~~~~~~l~~~l~~ 172 (200)
T PRK13540 159 DELSLLTIITKIQE 172 (200)
T ss_pred CHHHHHHHHHHHHH
Confidence 98888888887774
No 84
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.1e-20 Score=158.80 Aligned_cols=148 Identities=15% Similarity=0.181 Sum_probs=104.9
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------cccCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------~~~~~ 150 (234)
++++|+++.|++..+++|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... .....
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-YQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 678999999988889999999999999999999999999999999999988 89999999998864211 00100
Q ss_pred CCh-hhHHHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026740 151 FKA-EDRVENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212 (234)
Q Consensus 151 ~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~ 212 (234)
+.+ ....+++.. ...+...+...++.. ...++.+.++....+++++..+.+ +++|||+..
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l--llLDEPt~~ 158 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL--LLLDEPFGA 158 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcc
Confidence 000 011111110 001222233333211 123455666777889999999988 899999999
Q ss_pred hhhcchhhHHHHHHc
Q 026740 213 CEARDPKGLYKLARE 227 (234)
Q Consensus 213 l~~R~~~~l~~~~~~ 227 (234)
|+......+++.+++
T Consensus 159 LD~~~~~~l~~~L~~ 173 (255)
T PRK11248 159 LDAFTREQMQTLLLK 173 (255)
T ss_pred CCHHHHHHHHHHHHH
Confidence 988888888777653
No 85
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.83 E-value=8.1e-21 Score=156.66 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=101.7
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCccccccccccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++ . |.+|+|.++|+++.. ....
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-p~~G~i~~~g~~~~~-------~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-VTEGEILFKGEDITD-------LPPE 72 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CCccEEEECCEECCc-------CCHH
Confidence 35789999998888999999999999999999999999999999999984 5 899999999998763 2211
Q ss_pred hHHHHHHHHHHHHHHHHhcCce----------EE-EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHH
Q 026740 155 DRVENIRRIGEVAKLFADAGVI----------CI-ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~ 223 (234)
.+... .+++++|+...+ .. ..++.+.++....++.++..+.+ +++|+|+..++......+++
T Consensus 73 ~~~~~-----~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~ 145 (200)
T cd03217 73 ERARL-----GIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDL--AILDEPDSGLDIDALRLVAE 145 (200)
T ss_pred HHhhC-----cEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCHHHHHHHHH
Confidence 11100 111122221111 11 23455666777889999999998 89999999998887888777
Q ss_pred HHHc
Q 026740 224 LARE 227 (234)
Q Consensus 224 ~~~~ 227 (234)
.+++
T Consensus 146 ~L~~ 149 (200)
T cd03217 146 VINK 149 (200)
T ss_pred HHHH
Confidence 7764
No 86
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.83 E-value=7e-20 Score=154.01 Aligned_cols=148 Identities=15% Similarity=0.241 Sum_probs=103.9
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSF 151 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~ 151 (234)
++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ...+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-PDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccCCHhHHHhccEEE
Confidence 357899999998889999999999999999999999999999999999988 89999999998763210 011111
Q ss_pred Chh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
.++ ...+++... ..+...+...++.. ...++.+.++....+++++..+.+ +++
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lll 157 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF--LLL 157 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEe
Confidence 111 111111110 01111222222211 122345566677888999999988 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||+..++......+++.+++
T Consensus 158 DEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 158 DEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHH
Confidence 999999998888888886653
No 87
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.83 E-value=5.3e-20 Score=154.35 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=105.7
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc-----ccCCccEEEEcCccccccc------
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-----HWRGKLTYILDGDNCRHGL------ 145 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll-----~~p~~G~i~~~g~~v~~~~------ 145 (234)
++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|++ + |.+|+|.++|+++....
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-PDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-CCCeEEEECCEEhhhcchHHHHH
Confidence 35789999998888999999999999999999999999999999999998 7 89999999998764211
Q ss_pred cccCCCChhh-------HHHHHHH-------------HHHHHHHHHhcCceE-------EEecCcccHHHHHHHHHhCCC
Q 026740 146 NRDLSFKAED-------RVENIRR-------------IGEVAKLFADAGVIC-------IACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 146 ~~~~~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ll~~ 198 (234)
...+++.+++ ..+++.. ...+...+...++.. ...++.+.++....+++++..
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 0111111111 1111110 001122233333211 133455667777889999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+ +++|||+..++....+.+++.+++
T Consensus 160 p~l--lllDEPt~~LD~~~~~~l~~~l~~ 186 (227)
T cd03260 160 PEV--LLLDEPTSALDPISTAKIEELIAE 186 (227)
T ss_pred CCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 988 899999999998888888887764
No 88
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.82 E-value=2e-20 Score=155.34 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=104.1
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------ccccCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~~~~ 150 (234)
++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++... ....++
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-PDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccchhHHHHHhcce
Confidence 357899999988889999999999999999999999999999999999988 8999999999876320 001111
Q ss_pred CChhh--------HHHHHHHH-------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 151 FKAED--------RVENIRRI-------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 151 ~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
+.+++ ..+++... ..+...+...++. ....++.+.++....+++++..+.+ +
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--l 157 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV--M 157 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE--E
Confidence 11111 11111100 0111122222221 1123455666777889999999988 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..++....+.+++.+++
T Consensus 158 llDEP~~~LD~~~~~~l~~~l~~ 180 (213)
T cd03262 158 LFDEPTSALDPELVGEVLDVMKD 180 (213)
T ss_pred EEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999988888887777763
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.82 E-value=1.3e-20 Score=162.20 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=106.1
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------cc
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NR 147 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~ 147 (234)
++++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++.... ..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-PDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccChhhHHHHhh
Confidence 46899999999998889999999999999999999999999999999999988 89999999998764210 01
Q ss_pred cCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCc
Q 026740 148 DLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 148 ~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
.+++.++ ...+++... ..+...+...++.. ...++.+.++....++.++..+.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1111111 111111110 01111222222211 123345566777888999999988
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+....+.+++.+++
T Consensus 165 --llLDEPt~~LD~~~~~~l~~~l~~ 188 (269)
T PRK11831 165 --IMFDEPFVGQDPITMGVLVKLISE 188 (269)
T ss_pred --EEEcCCCccCCHHHHHHHHHHHHH
Confidence 899999999988888877777664
No 90
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=4.1e-20 Score=145.98 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=95.2
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
+++++++.+.-++..+|+++||++++||+++|+||||||||||+|+++.++. |++|+++|.|+++.. +.++.
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-p~~G~l~f~Ge~vs~-------~~pea 74 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDVST-------LKPEA 74 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-CCCceEEEcCccccc-------cChHH
Confidence 3455566666678899999999999999999999999999999999999998 999999999999984 77776
Q ss_pred HHHHHHHHHHHHHHHHhcCceE-----EE-----------------------------------ecCcccHHHHHHHHHh
Q 026740 156 RVENIRRIGEVAKLFADAGVIC-----IA-----------------------------------CLISPYRKDRDACRSM 195 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~-----~~-----------------------------------~~~~~~~~~~~~~~~l 195 (234)
.+. +++++.|.+.++. +. .++.+.++.-..++.+
T Consensus 75 ~Rq------~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L 148 (223)
T COG4619 75 YRQ------QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL 148 (223)
T ss_pred HHH------HHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh
Confidence 665 4555555444321 11 1122334444566666
Q ss_pred CCCCCceEEEEeCChhhhhhcch
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
.-.+.+ +++|+|++.|+....
T Consensus 149 q~~P~I--LLLDE~TsALD~~nk 169 (223)
T COG4619 149 QFMPKI--LLLDEITSALDESNK 169 (223)
T ss_pred hcCCce--EEecCchhhcChhhH
Confidence 666666 789999999976554
No 91
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.82 E-value=2.1e-20 Score=154.22 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=104.7
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA 153 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~ 153 (234)
++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++.... ...+++.+
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-PLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccccHHhhhheEEec
Confidence 367899999998899999999999999999999999999999999999988 89999999998764210 00111111
Q ss_pred h--------hHHHHHHHH------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026740 154 E--------DRVENIRRI------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE 214 (234)
Q Consensus 154 ~--------~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~ 214 (234)
+ ...+++... ..+...+...++. ....++.+.++....++.++..+.+ +++|||+..++
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~LD 157 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL--WILDEPTTALD 157 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCC
Confidence 0 111111110 0112222222221 1123445566777889999999998 89999999999
Q ss_pred hcchhhHHHHHHc
Q 026740 215 ARDPKGLYKLARE 227 (234)
Q Consensus 215 ~R~~~~l~~~~~~ 227 (234)
......+++.+++
T Consensus 158 ~~~~~~l~~~l~~ 170 (201)
T cd03231 158 KAGVARFAEAMAG 170 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887753
No 92
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.82 E-value=1.2e-19 Score=153.04 Aligned_cols=148 Identities=16% Similarity=0.191 Sum_probs=103.9
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSF 151 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~ 151 (234)
++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 357899999988889999999999999999999999999999999999988 89999999998764211 001111
Q ss_pred Chhh--------HHHHHHHH----------------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhC
Q 026740 152 KAED--------RVENIRRI----------------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSML 196 (234)
Q Consensus 152 ~~~~--------~~~~~~~~----------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll 196 (234)
.+++ ..+++... ..+...+..+++.. ...++.+.++....+++++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 1111 11111100 01112222222211 1223445566778889999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..++......+++.+++
T Consensus 160 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 188 (236)
T cd03219 160 TDPKL--LLLDEPAAGLNPEETEELAELIRE 188 (236)
T ss_pred cCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 99988 899999999998888888887764
No 93
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.82 E-value=4.3e-20 Score=164.77 Aligned_cols=149 Identities=20% Similarity=0.205 Sum_probs=107.3
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~ 153 (234)
.++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..... ..+++..
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-QTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 3678999999998899999999999999999999999999999999999988 999999999998753110 1111111
Q ss_pred hh--------HHHHHHHH----------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 154 ED--------RVENIRRI----------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 154 ~~--------~~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
++ ..+++.+. ..+...+...++.. ...++.+.+++...+++++..+.+ +
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l--l 158 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI--L 158 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 11 11111110 01222233233211 123455667778899999999998 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..|+...+..+++.+++
T Consensus 159 LLDEP~s~LD~~~r~~l~~~L~~ 181 (353)
T PRK10851 159 LLDEPFGALDAQVRKELRRWLRQ 181 (353)
T ss_pred EEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999998888888777653
No 94
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.82 E-value=6.1e-20 Score=155.38 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=103.8
Q ss_pred ceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026740 77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD 148 (234)
Q Consensus 77 ~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~ 148 (234)
++++|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-PSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 56889999998 7789999999999999999999999999999999999988 89999999998764210 001
Q ss_pred CCCChhh--------HHHHHHH--------------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHh
Q 026740 149 LSFKAED--------RVENIRR--------------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 149 ~~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l 195 (234)
+++.+++ ..+++.. ...+...+...++. ....++.+.++....++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 1111110 0111100 00111122222221 1123455667777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..++......+++.+++
T Consensus 161 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 190 (243)
T TIGR02315 161 AQQPDL--ILADEPIASLDPKTSKQVMDYLKR 190 (243)
T ss_pred hcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888777776653
No 95
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.6e-20 Score=154.51 Aligned_cols=147 Identities=17% Similarity=0.199 Sum_probs=103.5
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA 153 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~ 153 (234)
++++|+++.|++..+++++||++++| +++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...+++.+
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-PSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCCccccchHHHHhheEEec
Confidence 35789999998888999999999999 999999999999999999999988 89999999998764210 00111111
Q ss_pred h--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 154 E--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 154 ~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
+ ...+++... ..+...+...++. ....++.+.++....+++++..+.+ +++||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDE 156 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI--LIVDE 156 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 1 111111110 0111122222221 1123455566777889999999998 89999
Q ss_pred ChhhhhhcchhhHHHHHHc
Q 026740 209 PLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~~ 227 (234)
|+..++....+.+++.+++
T Consensus 157 Pt~~LD~~~~~~l~~~l~~ 175 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSE 175 (211)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999998888888887764
No 96
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.82 E-value=5.5e-20 Score=155.54 Aligned_cols=148 Identities=19% Similarity=0.210 Sum_probs=105.1
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------cccCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------~~~~~ 150 (234)
++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ |.+|+|+++|.++.... ...++
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-ITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCChhHHHHhhceE
Confidence 578999999988889999999999999999999999999999999999988 89999999998864210 00111
Q ss_pred CChhh--------HHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 151 FKAED--------RVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 151 ~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
+.+++ ..+++... ..+...+...++.. ...++.+.++....+++++..+.+ +
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--l 158 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL--M 158 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE--E
Confidence 11111 11111110 01122222222211 122345566677889999999988 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..++....+.+++.+++
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999888888887753
No 97
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.3e-19 Score=153.24 Aligned_cols=149 Identities=20% Similarity=0.209 Sum_probs=105.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCCh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~ 153 (234)
.++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|.++.... ...+++.+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCccccceEEEe
Confidence 3678999999998889999999999999999999999999999999999988 89999999998764211 01111111
Q ss_pred h--------hHHHHHHHH----------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 154 E--------DRVENIRRI----------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 154 ~--------~~~~~~~~~----------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
+ ...+++... ..+...+...++. ....++.+.++....+++++..+.+ +
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--l 158 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV--L 158 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 1 111111100 0111122222221 1123455667777889999999988 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..++....+.+++.+++
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~ 181 (239)
T cd03296 159 LLDEPFGALDAKVRKELRRWLRR 181 (239)
T ss_pred EEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999998888888887764
No 98
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=7.2e-20 Score=154.90 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=99.8
Q ss_pred ccceeeceeeecCC---------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc
Q 026740 75 TVAKSTNILWHKNS---------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~ 145 (234)
.+++++|+++.|.. +.+++||||+|++||+++|+|+||||||||.|+|.|++. |++|+|+++|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~i~~-- 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-PTSGEILFEGKDITK-- 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCceEEEcCcchhh--
Confidence 46788888888842 479999999999999999999999999999999999998 999999999999874
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHHhcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchh
Q 026740 146 NRDLSFKAEDRVENIRRIGEVAKLFADAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (234)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~ 219 (234)
+...++.+ .+..++...++ ...-.++.+.+++-.++++++-.+.+ +..|+|.+.++.....
T Consensus 80 -----~~~~~~~~------~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~l--iV~DEpvSaLDvSiqa 146 (268)
T COG4608 80 -----LSKEERRE------RVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKL--IVADEPVSALDVSVQA 146 (268)
T ss_pred -----cchhHHHH------HHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcE--EEecCchhhcchhHHH
Confidence 44333333 22222332222 11123456677888899999988888 8999999999765544
Q ss_pred h
Q 026740 220 G 220 (234)
Q Consensus 220 ~ 220 (234)
.
T Consensus 147 q 147 (268)
T COG4608 147 Q 147 (268)
T ss_pred H
Confidence 4
No 99
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=6e-20 Score=158.21 Aligned_cols=149 Identities=16% Similarity=0.179 Sum_probs=105.7
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-c-----cccC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-L-----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-~-----~~~~ 149 (234)
+++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++... . ...+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-PQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCccEEEECCEEcccccCCHHHHHhhe
Confidence 3678999999998889999999999999999999999999999999999998 9999999999887310 0 0112
Q ss_pred CCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceE
Q 026740 150 SFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 150 ~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
++.+++. .+++... ..+...+...++. ....++.+.++....++.++..+.+
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l-- 157 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY-- 157 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE--
Confidence 2222211 1111100 0011122222221 1223455667777889999999998
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++......+++.+++
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~ 181 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRR 181 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 899999999988888888777654
No 100
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.82 E-value=3.4e-20 Score=154.07 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=101.8
Q ss_pred eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh----
Q 026740 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE---- 154 (234)
Q Consensus 79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~---- 154 (234)
++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++... ...+++.++
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~-~~~i~~v~q~~~~ 79 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLEKE-RKRIGYVPQRRSI 79 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCccHHHH-HhheEEecccccc
Confidence 5789999988889999999999999999999999999999999999988 8999999999765210 000001000
Q ss_pred ------hHHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026740 155 ------DRVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMD 207 (234)
Q Consensus 155 ------~~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld 207 (234)
...+++.. ...+...+...++. ....++.+.++....+++++..+.+ +++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--lllD 157 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL--LLLD 157 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence 01111100 00112222222221 1233455667777889999999998 8999
Q ss_pred CChhhhhhcchhhHHHHHHc
Q 026740 208 VPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 208 ~P~~~l~~R~~~~l~~~~~~ 227 (234)
||+..|+......+++.+++
T Consensus 158 EPt~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 158 EPFAGVDPKTQEDIYELLRE 177 (213)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999988888887777654
No 101
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.82 E-value=9.2e-21 Score=155.93 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=104.0
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA 153 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~ 153 (234)
++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...+++.+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccchHHhhhheEEec
Confidence 357899999998899999999999999999999999999999999999988 89999999998764211 00111111
Q ss_pred h--------hHHHHHHHHH--------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026740 154 E--------DRVENIRRIG--------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212 (234)
Q Consensus 154 ~--------~~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~ 212 (234)
+ ...+++.... .+...+...++. ....++.+.++....+++++..+.+ +++|||++.
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~ 157 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL--WILDEPTTA 157 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCcC
Confidence 1 1111111100 111222222221 1123345566677888999999988 899999999
Q ss_pred hhhcchhhHHHHHHc
Q 026740 213 CEARDPKGLYKLARE 227 (234)
Q Consensus 213 l~~R~~~~l~~~~~~ 227 (234)
++......+++.+++
T Consensus 158 LD~~~~~~l~~~l~~ 172 (198)
T TIGR01189 158 LDKAGVALLAGLLRA 172 (198)
T ss_pred CCHHHHHHHHHHHHH
Confidence 988888888777764
No 102
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.82 E-value=9.7e-20 Score=146.08 Aligned_cols=134 Identities=20% Similarity=0.175 Sum_probs=98.8
Q ss_pred eeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhH
Q 026740 78 KSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (234)
Q Consensus 78 ~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~ 156 (234)
+++|+++.|+ +..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.... ++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~i-------~~~~q~~ 73 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEGEDL-------LFLPQRP 73 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCCceE-------EEECCCC
Confidence 5789999995 4679999999999999999999999999999999999988 89999999874211 1222221
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.- .. ..+...+... ....++.+.++....+++++..+.+ +++|||+..++....+.+++.+++
T Consensus 74 ~~-~~--~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~--lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 74 YL-PL--GTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKF--VFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred cc-cc--ccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCE--EEEECCccccCHHHHHHHHHHHHH
Confidence 00 00 0000000000 1233455667777889999999988 899999999998888888887765
No 103
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.82 E-value=2.1e-19 Score=152.08 Aligned_cols=149 Identities=11% Similarity=0.155 Sum_probs=105.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~ 150 (234)
+++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|.++.... ...++
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCee
Confidence 5788999999988889999999999999999999999999999999999988 89999999998764211 00111
Q ss_pred CChh--------hHHHHHHHH--------------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCC
Q 026740 151 FKAE--------DRVENIRRI--------------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 151 ~~~~--------~~~~~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~ 197 (234)
+.++ ...+++... ..+...+...++.. ...++.+.++....+++++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 1111 111111110 01112222222211 12234556667788899999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|+|+..++....+.+++.+++
T Consensus 161 ~p~~--lllDEPt~~LD~~~~~~l~~~l~~ 188 (242)
T TIGR03411 161 DPKL--LLLDEPVAGMTDEETEKTAELLKS 188 (242)
T ss_pred CCCE--EEecCCccCCCHHHHHHHHHHHHH
Confidence 9988 899999999988888888887764
No 104
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.7e-20 Score=159.03 Aligned_cols=151 Identities=20% Similarity=0.233 Sum_probs=106.9
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
...++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...+
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEEhhhCCHHHHhhhe
Confidence 347889999999998889999999999999999999999999999999999988 89999999998764210 0011
Q ss_pred CCChhh--------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAED--------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+++ ..+++.. ...+...+...++. ....++.+.++....+++++..+.
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 163 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA 163 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence 111111 0111100 00111122222221 123345566677788999999998
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|+|+..++....+.+++.+++
T Consensus 164 l--lllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 164 I--MLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred E--EEEeCccccCCHHHHHHHHHHHHH
Confidence 8 899999999988888888887753
No 105
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-19 Score=154.86 Aligned_cols=150 Identities=16% Similarity=0.157 Sum_probs=106.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------cccc
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~~ 148 (234)
+.++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++... ....
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-PSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEHHHhhCceEEEecC
Confidence 57899999999998889999999999999999999999999999999999988 8999999998764211 0011
Q ss_pred CCCCh-hhHHHHHHH------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026740 149 LSFKA-EDRVENIRR------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216 (234)
Q Consensus 149 ~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R 216 (234)
..+.+ ....+++.. -..+...+..+++.. ...++.+.++....++.++..+.+ +++|||+..|+..
T Consensus 90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l--llLDEPt~~LD~~ 167 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL--LLLDEPLGALDAL 167 (257)
T ss_pred ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHH
Confidence 00100 011111110 011222233333211 123455667777889999999988 8999999999888
Q ss_pred chhhHHHHHHc
Q 026740 217 DPKGLYKLARE 227 (234)
Q Consensus 217 ~~~~l~~~~~~ 227 (234)
....+++.+++
T Consensus 168 ~~~~l~~~L~~ 178 (257)
T PRK11247 168 TRIEMQDLIES 178 (257)
T ss_pred HHHHHHHHHHH
Confidence 88877776653
No 106
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.81 E-value=1.4e-19 Score=152.77 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=104.8
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc---ccCCCCh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---RDLSFKA 153 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~---~~~~~~~ 153 (234)
++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++..... ..+++.+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-AQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcccCChhhhhhEEEeC
Confidence 578899999988889999999999999999999999999999999999988 899999999987642110 0111111
Q ss_pred hh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 154 ED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 154 ~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
++ ..+++... ..+...+...++.. ...++.+.++....+++++..+.+ +++||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDE 158 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL--LLLDE 158 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 11 11111100 01112222222211 123345566677889999999988 89999
Q ss_pred ChhhhhhcchhhHHHHHHc
Q 026740 209 PLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~~ 227 (234)
|+..++....+.+++.+++
T Consensus 159 P~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred CccCCCHHHHHHHHHHHHH
Confidence 9999998888888877653
No 107
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.7e-20 Score=151.21 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=102.1
Q ss_pred cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcCccccccccccCC
Q 026740 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g~~v~~~~~~~~~ 150 (234)
+++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|++. .|.+|+|.++|+++.......++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5778999999974 679999999999999999999999999999999999753 37899999999876311111122
Q ss_pred CChhh--------HHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHH
Q 026740 151 FKAED--------RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (234)
Q Consensus 151 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~ 222 (234)
+..++ ..+++.. ..... .++.+.++....+++++..+.+ +++|||+..++......++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~----~~~~~--------~LSgGe~qrv~la~al~~~p~v--lllDEP~~~LD~~~~~~l~ 148 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRF----SALLR--------GLSVEQRKRLTIGVELAAKPSI--LFLDEPTSGLDSQAAYNIV 148 (192)
T ss_pred EecccCccccCCcHHHHHHH----HHHHh--------cCCHHHhHHHHHHHHHhcCCcE--EEEeCCCcCCCHHHHHHHH
Confidence 22221 1111111 00000 4556667777889999999988 8999999999988888888
Q ss_pred HHHHc
Q 026740 223 KLARE 227 (234)
Q Consensus 223 ~~~~~ 227 (234)
+.+++
T Consensus 149 ~~l~~ 153 (192)
T cd03232 149 RFLKK 153 (192)
T ss_pred HHHHH
Confidence 87764
No 108
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=2.2e-19 Score=148.77 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=105.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-ccccCCCCh-
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKA- 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-~~~~~~~~~- 153 (234)
+++++|+++.|++..+++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++... ....+++.+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-PAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeCcchhhHhhcEEecC
Confidence 4788999999988889999999999999999999999999999999999988 8999999999875311 000011110
Q ss_pred -------hhHHHHHHHH--------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026740 154 -------EDRVENIRRI--------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (234)
Q Consensus 154 -------~~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l 213 (234)
....+++... ..+...+...++.. ...++.+.++....+++++..+.+ +++|||+..+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~L 158 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI--WILDEPTAAL 158 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCcccC
Confidence 0111111110 01222222233211 123445566777889999999988 8999999999
Q ss_pred hhcchhhHHHHHHc
Q 026740 214 EARDPKGLYKLARE 227 (234)
Q Consensus 214 ~~R~~~~l~~~~~~ 227 (234)
+......+++.+++
T Consensus 159 D~~~~~~l~~~l~~ 172 (207)
T PRK13539 159 DAAAVALFAELIRA 172 (207)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888777764
No 109
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.6e-20 Score=162.58 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=107.6
Q ss_pred ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026740 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~ 148 (234)
++++++|+++.|++ ..+++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ...
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-PEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHhhh
Confidence 36889999999974 569999999999999999999999999999999999998 99999999999875311 111
Q ss_pred CCCChhhH---------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCce
Q 026740 149 LSFKAEDR---------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 149 ~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
+++.+++. .+++... ..+...+...++.. ...++.+.++....+++++..+.+
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l- 161 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI- 161 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence 22222211 1111110 01122222222211 123355666777889999999999
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|+|+..|+......+++.+++
T Consensus 162 -llLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 162 -IILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred -EEEeCCcccCCHHHHHHHHHHHHH
Confidence 899999999999888888887764
No 110
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=9.3e-20 Score=158.39 Aligned_cols=148 Identities=17% Similarity=0.154 Sum_probs=106.0
Q ss_pred ceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026740 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------ 145 (234)
Q Consensus 77 ~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------ 145 (234)
++++|+++.|+. +.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-PTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEECCEECCCcCccHHHH
Confidence 678999999964 469999999999999999999999999999999999998 99999999998875311
Q ss_pred cccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce-------EEEecCcccHHHHHHHHHhCC
Q 026740 146 NRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI-------CIACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 146 ~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ll~ 197 (234)
...+++.+++ ..+.+... ..+...+...++. ....++.+.++....+++++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 1112222221 11111110 0112223333331 113345566777788999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|+|+..|+......+++.+++
T Consensus 162 ~P~l--lllDEPt~gLD~~~~~~l~~~l~~ 189 (287)
T PRK13637 162 EPKI--LILDEPTAGLDPKGRDEILNKIKE 189 (287)
T ss_pred CCCE--EEEECCccCCCHHHHHHHHHHHHH
Confidence 9998 899999999988888888877753
No 111
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.81 E-value=1.5e-20 Score=167.87 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=99.0
Q ss_pred eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--------cccCCCChh-
Q 026740 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRDLSFKAE- 154 (234)
Q Consensus 84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~~~~~~~- 154 (234)
++|+++.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.... ...+++..+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 35778889999999999999999999999999999999999998 99999999999876311 111111111
Q ss_pred -------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 155 -------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 155 -------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
...+++... ..+...+...++.. ...++.+.+++...+++++..+.+ +++|||+
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i--LLlDEP~ 157 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI--LLMDEAF 157 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCc
Confidence 111211110 01122222222211 122345566777889999999988 8999999
Q ss_pred hhhhhcchhhHHHHHHc
Q 026740 211 QVCEARDPKGLYKLARE 227 (234)
Q Consensus 211 ~~l~~R~~~~l~~~~~~ 227 (234)
..++...+..+++.+++
T Consensus 158 saLD~~~r~~l~~~l~~ 174 (363)
T TIGR01186 158 SALDPLIRDSMQDELKK 174 (363)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99988888888877653
No 112
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.7e-19 Score=152.28 Aligned_cols=150 Identities=12% Similarity=0.152 Sum_probs=104.8
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-ATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEecCCCCHHHHHHhCE
Confidence 36889999999988889999999999999999999999999999999999988 89999999998764210 0011
Q ss_pred CCChh--------hHHHHHHH----------HHHHHHHHHhc------CceEEEecCcccHHHHHHHHHhCCCCCceEEE
Q 026740 150 SFKAE--------DRVENIRR----------IGEVAKLFADA------GVICIACLISPYRKDRDACRSMLPEGDFIEVF 205 (234)
Q Consensus 150 ~~~~~--------~~~~~~~~----------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ 205 (234)
++.++ ...+++.. ...+....... .......++.+.++....++.++..+.+ ++
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i--ll 160 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL--LL 160 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE--EE
Confidence 11110 00111100 00001111111 0111223455566777888999999988 89
Q ss_pred EeCChhhhhhcchhhHHHHHHc
Q 026740 206 MDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 206 ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+|+|+..++....+.+++.+++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHH
Confidence 9999999998888888887753
No 113
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.81 E-value=9.9e-20 Score=154.81 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=105.6
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-----------
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----------- 144 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----------- 144 (234)
+++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-PEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccccccchhhHHH
Confidence 5789999999988889999999999999999999999999999999999988 8999999999876421
Q ss_pred -ccccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCC
Q 026740 145 -LNRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 145 -~~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~ 197 (234)
....+++.++ ...+++... ..+...+...++.. ...++.+.++....+++++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 0001111111 111111100 01112222223211 12234556677788999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||+..|+......+++.+++
T Consensus 162 ~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 189 (250)
T PRK11264 162 RPEV--ILFDEPTSALDPELVGEVLNTIRQ 189 (250)
T ss_pred CCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9988 899999999988888888876653
No 114
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.81 E-value=5.2e-20 Score=149.17 Aligned_cols=113 Identities=18% Similarity=0.119 Sum_probs=94.1
Q ss_pred eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHH
Q 026740 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (234)
Q Consensus 80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~ 159 (234)
.|+++.|++..++++. |++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++. +.+++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~--------~~~q~~--- 70 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPV--------YKPQYI--- 70 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEE--------EEcccC---
Confidence 4789999999999884 9999999999999999999999999999998 99999999997653 222211
Q ss_pred HHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
. ++.+.++....++.++..+.+ +++|||+..++....+.+++.+++
T Consensus 71 --------------~------LSgGq~qrv~laral~~~p~l--llLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 71 --------------D------LSGGELQRVAIAAALLRNATF--YLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred --------------C------CCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence 0 555667777889999999988 899999999988887777766653
No 115
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.5e-20 Score=164.66 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=105.0
Q ss_pred cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc---CCccEEEEcCcccccccc--
Q 026740 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHGLN-- 146 (234)
Q Consensus 76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~---p~~G~i~~~g~~v~~~~~-- 146 (234)
+++++|+++.|+. ..+++|+||+|++||+++|+|+||||||||+++|+|+++. +++|+|.++|+++.....
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5789999999976 5799999999999999999999999999999999999862 378999999998753110
Q ss_pred ------ccCCCChhhH--------------HHHHHH---------HHHHHHHHHhcCceE--------EEecCcccHHHH
Q 026740 147 ------RDLSFKAEDR--------------VENIRR---------IGEVAKLFADAGVIC--------IACLISPYRKDR 189 (234)
Q Consensus 147 ------~~~~~~~~~~--------------~~~~~~---------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 189 (234)
..+++.+++. .+.+.. ...+...+...++.. ...++.+.+++.
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 0122222111 111110 011222233333311 123455667777
Q ss_pred HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++++++..+.+ +++|||+..|+......+++.+++
T Consensus 163 ~iArAL~~~P~l--lilDEPts~LD~~~~~~il~lL~~ 198 (326)
T PRK11022 163 MIAMAIACRPKL--LIADEPTTALDVTIQAQIIELLLE 198 (326)
T ss_pred HHHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 889999999998 899999999988887777776653
No 116
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.2e-20 Score=161.27 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=106.2
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
+++++|+++.|+ +..+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++.... ...++
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-PQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHhhEE
Confidence 678999999996 5679999999999999999999999999999999999998 89999999998874311 01122
Q ss_pred CChhhH---------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 151 FKAEDR---------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 151 ~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
+.+++. .+++... ..+...+...++.. ...++.+.++....+++++..+.+ +
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l--l 160 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV--I 160 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence 222211 1111100 01112222222211 123345566777889999999998 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..|+......+++.+++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHH
Confidence 99999999988888888777753
No 117
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.81 E-value=4e-20 Score=173.02 Aligned_cols=148 Identities=24% Similarity=0.219 Sum_probs=106.0
Q ss_pred cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc----cCC
Q 026740 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR----DLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~----~~~ 150 (234)
.++++|++++|++ .++++|+||++++|+.++|+||||||||||+++|+|+++ |++|+|.+||.++... .. .++
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~i~g~~i~~~-~~~lr~~i~ 411 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD-PLQGEVTLDGVSVSSL-QDELRRRIS 411 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhH-HHHHHhheE
Confidence 4889999999975 569999999999999999999999999999999999998 9999999999887632 11 011
Q ss_pred CChhh-------HHHHHH------------HHHHH---HHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAED-------RVENIR------------RIGEV---AKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~~-------~~~~~~------------~~~~~---~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.+++ .++++. ...+. ....... +. ..+ ..++.+.+++-..+|++++.+.+
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 011111 00011 0111110 11 011 22455667788999999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||++.++....+.+++.+++
T Consensus 492 --liLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 492 --LLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred --EEEeCCcccCCHHHHHHHHHHHHH
Confidence 899999999999999988888875
No 118
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.4e-20 Score=155.70 Aligned_cols=148 Identities=14% Similarity=0.220 Sum_probs=103.5
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~ 150 (234)
+++++|+++.|+++.+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|+++|.++.... ...++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-RDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 5788999999998889999999999999999999999999999999999988 89999999998764210 01111
Q ss_pred CChhh--------HHHHHHHH-------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 151 FKAED--------RVENIRRI-------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 151 ~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
+.+++ ..+++... ..+...+..+++. ....++.+.++....+++++..+.+ +
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l 159 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF--I 159 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 11111 11111100 0111122222221 1123345566667888999999988 8
Q ss_pred EEeCChhhhhhcchhhHHHHHH
Q 026740 205 FMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++|||+..++......+++.++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~ 181 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIKRIIE 181 (241)
T ss_pred EEcCCcccCCHHHHHHHHHHHH
Confidence 9999999998888877776665
No 119
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3e-19 Score=151.28 Aligned_cols=148 Identities=18% Similarity=0.224 Sum_probs=104.4
Q ss_pred ceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026740 77 AKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (234)
Q Consensus 77 ~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~ 151 (234)
++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...+++
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-PTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCeEcCcCChHHhhcceEE
Confidence 357899999987 789999999999999999999999999999999999988 89999999998764210 011111
Q ss_pred Chh--------hHHHHHHHH------------HHHHHHHHhcCceE-------EEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC-------IACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
.++ ...+++... ..+...+...++.. ...++.+.++....+++++..+.+ +
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l 157 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL--L 157 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 111 111111110 01122223333321 122345566777889999999998 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..++......+++.+++
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~ 180 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKR 180 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHH
Confidence 99999999988888888777664
No 120
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.8e-19 Score=152.47 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=105.9
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
.+++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.++.... ...+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-PTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCcceEEECCEECCCCCHHHHHhcCe
Confidence 36889999999998899999999999999999999999999999999999988 89999999998764211 0011
Q ss_pred CCChh--------hHHHHHHHH---------------------------HHHHHHHHhcCce-----EEEecCcccHHHH
Q 026740 150 SFKAE--------DRVENIRRI---------------------------GEVAKLFADAGVI-----CIACLISPYRKDR 189 (234)
Q Consensus 150 ~~~~~--------~~~~~~~~~---------------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 189 (234)
++.++ ...+++... ..+...+...++. ....++.+.++..
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 11111 111111100 0111112222221 1122345566777
Q ss_pred HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..+++++..+.+ +++|||+..|+......+++.+.
T Consensus 163 ~la~al~~~p~l--lllDEPt~~LD~~~~~~l~~~L~ 197 (255)
T PRK11300 163 EIARCMVTQPEI--LMLDEPAAGLNPKETKELDELIA 197 (255)
T ss_pred HHHHHHhcCCCE--EEEcCCccCCCHHHHHHHHHHHH
Confidence 889999999998 89999999998888888887775
No 121
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.81 E-value=3.6e-20 Score=163.93 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=105.1
Q ss_pred cccceeeceeeecCC-------------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 74 STVAKSTNILWHKNS-------------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~-------------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
.++++++|+++.|+. ..+++|+||+|++||+++|+|+||||||||+++|+|++. |++|+|+++|++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-p~~G~I~~~G~~ 84 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-ATDGEVAWLGKD 84 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCcEEEECCEE
Confidence 358999999999952 568999999999999999999999999999999999998 899999999998
Q ss_pred ccccc-------cccCCCChhh----------HHHHHHH--------------HHHHHHHHHhcCceE------EEecCc
Q 026740 141 CRHGL-------NRDLSFKAED----------RVENIRR--------------IGEVAKLFADAGVIC------IACLIS 183 (234)
Q Consensus 141 v~~~~-------~~~~~~~~~~----------~~~~~~~--------------~~~~~~~~~~~~~~~------~~~~~~ 183 (234)
+.... ...+++..++ ..+++.. ...+...+...++.. ...++.
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 75311 0111111111 0111100 001112222222211 122355
Q ss_pred ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+.+++..++++++..+.+ +++|||+..|+......+++.++
T Consensus 165 G~~QRv~iArAL~~~P~l--lilDEPts~LD~~~~~~i~~lL~ 205 (331)
T PRK15079 165 GQCQRIGIARALILEPKL--IICDEPVSALDVSIQAQVVNLLQ 205 (331)
T ss_pred HHHHHHHHHHHHhcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 667777889999999998 89999999998887777776664
No 122
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.81 E-value=5.2e-20 Score=156.83 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=103.3
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----------
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----------- 145 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----------- 145 (234)
++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|++. |++|+|.++|+++....
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-IDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccccccch
Confidence 357899999988889999999999999999999999999999999999988 89999999998763210
Q ss_pred ------cccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHH
Q 026740 146 ------NRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACR 193 (234)
Q Consensus 146 ------~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 193 (234)
...+++..+ ...+++... ..+...+...++.. ...++.+.++....++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 011111111 111111110 01112222222211 1223455666778889
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++..+.+ +++|||+..|+......+++.+++
T Consensus 160 al~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~ 191 (252)
T TIGR03005 160 ALAMRPKV--MLFDEVTSALDPELVGEVLNVIRR 191 (252)
T ss_pred HHHcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999988 899999999988888888777754
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.81 E-value=3e-20 Score=155.69 Aligned_cols=149 Identities=21% Similarity=0.219 Sum_probs=104.4
Q ss_pred cceeeceeeecCCc----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026740 76 VAKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------ 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------ 145 (234)
+++++|+++.|++. .+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-PTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccchhhHHH
Confidence 35788999999765 79999999999999999999999999999999999988 89999999998764311
Q ss_pred -cccCCCChhhH----------HHHHHH------------H-HHH-HHHHHhcCce------EEEecCcccHHHHHHHHH
Q 026740 146 -NRDLSFKAEDR----------VENIRR------------I-GEV-AKLFADAGVI------CIACLISPYRKDRDACRS 194 (234)
Q Consensus 146 -~~~~~~~~~~~----------~~~~~~------------~-~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 194 (234)
...+++.+++. .+++.. . ... ...+..+++. ....++.+.++....++.
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 01111111110 111100 0 000 1122222221 112244556677788999
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+.+ +++|||+..|+....+.+++.+++
T Consensus 160 l~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 190 (228)
T cd03257 160 LALNPKL--LIADEPTSALDVSVQAQILDLLKK 190 (228)
T ss_pred HhcCCCE--EEecCCCCCCCHHHHHHHHHHHHH
Confidence 9999998 899999999988888888887753
No 124
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=153.10 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=105.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~ 151 (234)
.++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...+++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-PTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4678999999988889999999999999999999999999999999999988 89999999998764210 011112
Q ss_pred Chhh-------HHHHHHH--------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 152 KAED-------RVENIRR--------IGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 152 ~~~~-------~~~~~~~--------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
.+++ ..+++.. ...+...+...++. ....++.+.++....+++++..+.+ +++|||+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt 159 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV--LLLDEPT 159 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCc
Confidence 1111 1111110 00111222222221 1123345566777888999999988 8999999
Q ss_pred hhhhhcchhhHHHHHHc
Q 026740 211 QVCEARDPKGLYKLARE 227 (234)
Q Consensus 211 ~~l~~R~~~~l~~~~~~ 227 (234)
..|+....+.+++.+++
T Consensus 160 ~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 160 SALDPTSTEIIEELIVK 176 (241)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99998888888877764
No 125
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.81 E-value=1.6e-19 Score=151.05 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=103.6
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh--
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-- 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~-- 154 (234)
++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++.......+++.++
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccccccEEEEcCCC
Confidence 357899999988889999999999999999999999999999999999988 99999999998753211011111111
Q ss_pred ------hHHHHHHHH--------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026740 155 ------DRVENIRRI--------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA 215 (234)
Q Consensus 155 ------~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~ 215 (234)
...+++... ..+...+...++.. ...++.+.++....+++++..+.+ +++|+|+..++.
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l--lllDEP~~~LD~ 157 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL--LILDEPTNGLDP 157 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCccCCCH
Confidence 111222110 01122222222211 122344556666788999999988 899999999988
Q ss_pred cchhhHHHHHHc
Q 026740 216 RDPKGLYKLARE 227 (234)
Q Consensus 216 R~~~~l~~~~~~ 227 (234)
...+.+++.+++
T Consensus 158 ~~~~~l~~~L~~ 169 (223)
T TIGR03740 158 IGIQELRELIRS 169 (223)
T ss_pred HHHHHHHHHHHH
Confidence 888888877753
No 126
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=6.5e-20 Score=151.54 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=103.5
Q ss_pred cceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCcccccc---cc
Q 026740 76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHG---LN 146 (234)
Q Consensus 76 ~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~---~~ 146 (234)
...++|+++.|+ +..+++++||++++|++++|+|+||||||||+++|+|++++ |.+|+|.++|.++... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 457899999995 55799999999999999999999999999999999998863 5799999999887531 11
Q ss_pred ccCCCChhh--------HHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 147 RDLSFKAED--------RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 147 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
..+++.+++ ..+++... .... .......++.+.++....+++++..+.+ +++|||+..++....
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~----~~~~--~~~~~~~LS~Ge~qrl~laral~~~p~l--lllDEPt~~LD~~~~ 154 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFA----LRCK--GNEFVRGISGGERKRVSIAEALVSRASV--LCWDNSTRGLDSSTA 154 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhh----hhhc--cccchhhCCHHHHHHHHHHHHHhhCCCE--EEEcCCCccCCHHHH
Confidence 112222221 11111110 0000 1111223455566777889999999998 899999999988888
Q ss_pred hhHHHHHHc
Q 026740 219 KGLYKLARE 227 (234)
Q Consensus 219 ~~l~~~~~~ 227 (234)
+.+++.+++
T Consensus 155 ~~~~~~l~~ 163 (202)
T cd03233 155 LEILKCIRT 163 (202)
T ss_pred HHHHHHHHH
Confidence 888887764
No 127
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.1e-20 Score=159.80 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=107.0
Q ss_pred cccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cc
Q 026740 74 STVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NR 147 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~ 147 (234)
.++++++|+++.|++ ..+++|+||++++||+++|+||||||||||+++|+|+++ |.+|+|+++|.++.... ..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-VKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHh
Confidence 457899999999975 358999999999999999999999999999999999988 89999999998864211 01
Q ss_pred cCCCChhhH---------HHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCc
Q 026740 148 DLSFKAEDR---------VENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 148 ~~~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
.+++.+++. .++... ...+...+...++.. ...++.+.++....+++++..+.+
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 122222211 011100 001112222222211 123345566777889999999998
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++......+++.+++
T Consensus 164 --llLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 164 --IILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred --EEEeCCcccCCHHHHHHHHHHHHH
Confidence 899999999998888888887764
No 128
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.9e-20 Score=163.49 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=105.3
Q ss_pred ccceeeceeeecC----------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc
Q 026740 75 TVAKSTNILWHKN----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~----------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~ 144 (234)
++++++|+++.|+ .+.+++||||+|.+||+++|+|+||||||||+++|+|++. |.+|+|.++|+++...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-PTGGELYYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCcEEEECCEEcCcC
Confidence 4789999999995 2579999999999999999999999999999999999998 8999999999887532
Q ss_pred c-------cccCCCChhhH----------HHHHH-------------HHHHHHHHHHhcCceE------EEecCcccHHH
Q 026740 145 L-------NRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVIC------IACLISPYRKD 188 (234)
Q Consensus 145 ~-------~~~~~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 188 (234)
. ...+++..++. ...+. ....+...+...++.. ...++.+.+++
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 1 01122221110 00000 0011222233333211 12335566777
Q ss_pred HHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 189 ~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..++++++..+.+ +++|||+..|+......+++.++
T Consensus 163 v~iArAL~~~P~l--LilDEPts~LD~~~~~~i~~lL~ 198 (327)
T PRK11308 163 IAIARALMLDPDV--VVADEPVSALDVSVQAQVLNLMM 198 (327)
T ss_pred HHHHHHHHcCCCE--EEEECCCccCCHHHHHHHHHHHH
Confidence 7899999999998 89999999998877777776664
No 129
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.3e-19 Score=153.11 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=105.6
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
++++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|+++.... ...++
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-PSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEehhhCCHHHHhhheE
Confidence 36899999999988899999999999999999999999999999999999988 89999999998763210 00011
Q ss_pred CChh--------hHHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAE--------DRVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~--------~~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.++ ...+++.. ...+...+...++. ....++.+.++....+++++..+.+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 1111 11111110 00111122222221 1123455667777889999999998
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|+|+..|+......+++.+++
T Consensus 169 --llLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 169 --LLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred --EEEcCCcccCCHHHHHHHHHHHHH
Confidence 899999999988888777777653
No 130
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.6e-20 Score=158.69 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=104.7
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~ 148 (234)
+++++|+++.|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++ |.+|+|+++|.++.... ...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-AESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHHhh
Confidence 5789999999963 459999999999999999999999999999999999998 99999999998874311 011
Q ss_pred CCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026740 149 LSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 149 ~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
+++..++. .+++... ..+...+...++. ....++.+.++....++.++..+.+
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l- 161 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI- 161 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence 22222211 1111100 0111122222221 1133455566777889999999998
Q ss_pred EEEEeCChhhhhhcchhhHHHHHH
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|||+..|+......+++.++
T Consensus 162 -LlLDEPt~~LD~~~~~~l~~~l~ 184 (279)
T PRK13650 162 -IILDEATSMLDPEGRLELIKTIK 184 (279)
T ss_pred -EEEECCcccCCHHHHHHHHHHHH
Confidence 89999999998888888777665
No 131
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.3e-20 Score=160.66 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=104.6
Q ss_pred eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--------cccC
Q 026740 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRDL 149 (234)
Q Consensus 78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~~ 149 (234)
.++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 45689999999999999999999999999999999999999999999998 89999999998764210 0111
Q ss_pred CCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 150 SFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
++.+++ ..+++... ..+...+...++.. ...++.+.++....+++++..+.+ +
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i--l 182 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI--L 182 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE--E
Confidence 111111 11111110 01122222233211 123455667777899999999998 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..|+......+++.+++
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~ 205 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLR 205 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999998888888887653
No 132
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.4e-19 Score=153.18 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=104.5
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc-----c-----c
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----G-----L 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~-----~-----~ 145 (234)
+++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. . .
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecccccccchhhHHHH
Confidence 3678999999988899999999999999999999999999999999999988 899999999987520 0 0
Q ss_pred cccCCCChhh--------HHHHHHH-------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026740 146 NRDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 146 ~~~~~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
...+++.+++ ..+++.. ...+...+...++.. ...++.+.++....+++++..+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 0011111111 1111110 001111222222211 1223455666778899999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+ +++|||++.++......+++.+++
T Consensus 161 ~l--lilDEPt~~LD~~~~~~l~~~l~~ 186 (242)
T PRK11124 161 QV--LLFDEPTAALDPEITAQIVSIIRE 186 (242)
T ss_pred CE--EEEcCCCCcCCHHHHHHHHHHHHH
Confidence 88 899999999998888888777763
No 133
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.80 E-value=5.9e-20 Score=175.68 Aligned_cols=144 Identities=17% Similarity=0.118 Sum_probs=106.9
Q ss_pred cccceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026740 74 STVAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF 151 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~ 151 (234)
..-++++|++++|+.. .+++|+|++|++||.++|+|+||||||||+|+|.|++. |.+|+|++||.|+.. +
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~-p~~G~I~~dg~dl~~-------i 540 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK-PQQGRILLDGVDLND-------I 540 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEeHHh-------c
Confidence 3468899999999765 69999999999999999999999999999999999998 999999999999864 2
Q ss_pred ChhhHHHHHHHHH------------------------------HHHH----HHHhcCce--EE----EecCcccHHHHHH
Q 026740 152 KAEDRVENIRRIG------------------------------EVAK----LFADAGVI--CI----ACLISPYRKDRDA 191 (234)
Q Consensus 152 ~~~~~~~~~~~~~------------------------------~~~~----~~~~~~~~--~~----~~~~~~~~~~~~~ 191 (234)
+....++.+.++. +.+. +.+.+.-+ .+ ..++.+.+++...
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 2222221111111 1110 11111100 11 1235567888899
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
||+++..+.+ +++|||++.++....+..++.+.+
T Consensus 621 ARaLl~~P~I--LlLDEaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 621 ARALLSKPKI--LLLDEATSALDPETEAIILQNLLQ 654 (709)
T ss_pred HHHhccCCCE--EEEeCcccccCHhHHHHHHHHHHH
Confidence 9999999999 899999999999888887776654
No 134
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=9.3e-20 Score=157.58 Aligned_cols=149 Identities=14% Similarity=0.173 Sum_probs=104.5
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
+++++|+++.|+ ...+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++.... ...++
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-PTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheE
Confidence 578899999995 5569999999999999999999999999999999999988 99999999998764210 01111
Q ss_pred CChhh---------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 151 FKAED---------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 151 ~~~~~---------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
+.+++ ..+++.... .+...+...++. ....++.+.++....+++++..+.+ +
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l--l 159 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV--L 159 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--E
Confidence 11111 111111100 011112222221 1123455566777889999999998 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|+|+..++......+++.+++
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999988888888777753
No 135
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.80 E-value=7.5e-20 Score=152.86 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=102.8
Q ss_pred ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------
Q 026740 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------- 145 (234)
Q Consensus 77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------- 145 (234)
++++|+++.|++ ..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|+++|+++....
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-VQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEhHhcCHhHHHHH
Confidence 578899999974 679999999999999999999999999999999999988 89999999998874211
Q ss_pred cccCCCChhhH--------HHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026740 146 NRDLSFKAEDR--------VENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 146 ~~~~~~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
...+++.+++. .+++... ..+...+...++.. ...++.+.++....++.++..+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 01111111111 1111100 01112222222211 1223445566677889999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+ +++|||+..++....+.+++.+++
T Consensus 161 ~i--lllDEP~~~LD~~~~~~l~~~l~~ 186 (220)
T TIGR02982 161 KL--VLADEPTAALDSKSGRDVVELMQK 186 (220)
T ss_pred CE--EEEeCCCCcCCHHHHHHHHHHHHH
Confidence 88 899999999988888888877754
No 136
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.80 E-value=2.5e-20 Score=159.51 Aligned_cols=148 Identities=21% Similarity=0.182 Sum_probs=102.0
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~ 151 (234)
+++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|.++.... ...+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-PDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcccCCHHHhhhheEE
Confidence 4678999999998889999999999999999999999999999999999988 89999999998753210 000111
Q ss_pred Chh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhC------CCCC
Q 026740 152 KAE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSML------PEGD 200 (234)
Q Consensus 152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll------~~~~ 200 (234)
.++ ...+++... ..+...+...++. ....++.+.++....+++++ ..+.
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 111 111111100 0111122222221 12234556667778888888 3677
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+ +++|||+..|+......+.+.++
T Consensus 161 l--llLDEPt~~LD~~~~~~l~~~l~ 184 (258)
T PRK13548 161 W--LLLDEPTSALDLAHQHHVLRLAR 184 (258)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHHH
Confidence 7 89999999998888777777665
No 137
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.80 E-value=2.8e-19 Score=152.53 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=102.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh--
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-- 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~-- 153 (234)
+++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.+++...-.....+..+..
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~~~~~i~~v~q~~~~~~~l 82 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-PDEGVIKRNGKLRIGYVPQKLYLDTTL 82 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCccCEEEecccccccccc
Confidence 6889999999998889999999999999999999999999999999999988 8999999987421110111100100
Q ss_pred -hhHHHHHHH-----HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHH
Q 026740 154 -EDRVENIRR-----IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (234)
Q Consensus 154 -~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~ 222 (234)
....+.... ...+...+...++. ....++.+.++....++.++..+.+ +++|||+..++......++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llLDEPt~~LD~~~~~~l~ 160 (251)
T PRK09544 83 PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL--LVLDEPTQGVDVNGQVALY 160 (251)
T ss_pred ChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHH
Confidence 011111100 00111222222221 1233455666777889999999988 8999999999888888887
Q ss_pred HHHH
Q 026740 223 KLAR 226 (234)
Q Consensus 223 ~~~~ 226 (234)
+.++
T Consensus 161 ~~L~ 164 (251)
T PRK09544 161 DLID 164 (251)
T ss_pred HHHH
Confidence 7765
No 138
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.9e-19 Score=150.10 Aligned_cols=150 Identities=18% Similarity=0.135 Sum_probs=106.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCccccccc----cc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHGL----NR 147 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~~----~~ 147 (234)
.++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++++ |.+|+|.++|.++.... ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 57889999999888899999999999999999999999999999999999862 36899999998764211 01
Q ss_pred cCCCChh--------hHHHHHHHH--------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHhC
Q 026740 148 DLSFKAE--------DRVENIRRI--------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSML 196 (234)
Q Consensus 148 ~~~~~~~--------~~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ll 196 (234)
.+++.++ ...+++... ..+...+...++. ....++.+.++....+++++
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 1111111 111111100 0111222222321 11234556667778899999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..++....+.+++.+++
T Consensus 163 ~~p~l--llLDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14247 163 FQPEV--LLADEPTANLDPENTAKIESLFLE 191 (250)
T ss_pred cCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 99988 899999999999888888887764
No 139
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.80 E-value=7.4e-20 Score=155.94 Aligned_cols=150 Identities=18% Similarity=0.129 Sum_probs=104.9
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-----ccccc----
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHGL---- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-----v~~~~---- 145 (234)
++++++|+++.|++..+++|+||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|++ +....
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-PDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEecccccccccccCCHHHH
Confidence 36889999999988889999999999999999999999999999999999988 899999999876 42110
Q ss_pred ----cccCCCChhhH----------HHHHH-------------HHHHHHHHHHhcCce------EEEecCcccHHHHHHH
Q 026740 146 ----NRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI------CIACLISPYRKDRDAC 192 (234)
Q Consensus 146 ----~~~~~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 192 (234)
...+++..++. .+.+. ....+...+...++. ....++.+.++....+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 00111111110 00100 000111222222221 1122345566777889
Q ss_pred HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++++..+.+ +++|||+..|+....+.+++.+++
T Consensus 161 ral~~~p~v--lllDEP~~~LD~~~~~~l~~~l~~ 193 (253)
T TIGR02323 161 RNLVTRPRL--VFMDEPTGGLDVSVQARLLDLLRG 193 (253)
T ss_pred HHHhcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999998 899999999988888888776654
No 140
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.5e-20 Score=159.13 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=104.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~ 151 (234)
+++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++.... ...+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-PQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 4678999999998899999999999999999999999999999999999988 89999999998753210 000111
Q ss_pred Chhh--------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026740 152 KAED--------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 152 ~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
.+++ ..+++.. ...+...+...++. ....++.+.++....+++++..+.+
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l- 159 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV- 159 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence 1110 1111100 00111122222221 1123455666777889999999988
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++....+.+++.+++
T Consensus 160 -lllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 160 -VLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred -EEEcCCcccCCHHHHHHHHHHHHH
Confidence 899999999988888888887754
No 141
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.3e-19 Score=153.03 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=110.9
Q ss_pred ccccccc-CcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcc
Q 026740 66 SGNNLCQ-NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDN 140 (234)
Q Consensus 66 ~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~ 140 (234)
++..+.. ..++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+++. |.+|+|.++|.+
T Consensus 28 ~~~~~~~~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~ 107 (285)
T PRK14254 28 SGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN 107 (285)
T ss_pred CCCccccCCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE
Confidence 3443333 34578999999999888899999999999999999999999999999999999862 578999999987
Q ss_pred cccc------ccccCCCChh-------hHHHHHHHH-----------HHHHHHHHhcCce---------EEEecCcccHH
Q 026740 141 CRHG------LNRDLSFKAE-------DRVENIRRI-----------GEVAKLFADAGVI---------CIACLISPYRK 187 (234)
Q Consensus 141 v~~~------~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~~~~---------~~~~~~~~~~~ 187 (234)
+... ....+++.++ ...+++... ..+...+...++. ....++.+.++
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred ccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 6321 0011111111 111221110 0111222222221 12334556677
Q ss_pred HHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 188 ~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
....++.++..+.+ +++|||+..|+......+++.+++
T Consensus 188 rv~LAraL~~~p~l--LLLDEPts~LD~~~~~~l~~~L~~ 225 (285)
T PRK14254 188 RLCIARAIAPDPEV--ILMDEPASALDPVATSKIEDLIEE 225 (285)
T ss_pred HHHHHHHHHcCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 77899999999998 899999999988888888887764
No 142
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.80 E-value=6.5e-20 Score=160.43 Aligned_cols=140 Identities=19% Similarity=0.245 Sum_probs=98.8
Q ss_pred ecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCChhh------
Q 026740 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKAED------ 155 (234)
Q Consensus 85 ~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~~~------ 155 (234)
.|+++.+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+++.+++
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 5677889999999999999999999999999999999999998 99999999998764311 0111221111
Q ss_pred --HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026740 156 --RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216 (234)
Q Consensus 156 --~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R 216 (234)
..+++.... .+...+..+++. ....++.+.++....+++++..+.+ +++|||+..|+..
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~ 158 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV--LFLDEPTTGLDPR 158 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHH
Confidence 112211100 112223333321 1233455667777889999999998 8999999999888
Q ss_pred chhhHHHHHHc
Q 026740 217 DPKGLYKLARE 227 (234)
Q Consensus 217 ~~~~l~~~~~~ 227 (234)
....+++.+++
T Consensus 159 ~~~~l~~~l~~ 169 (302)
T TIGR01188 159 TRRAIWDYIRA 169 (302)
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 143
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.80 E-value=4.2e-20 Score=163.47 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=103.6
Q ss_pred ccceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccccccc--
Q 026740 75 TVAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGL-- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~~-- 145 (234)
++++++|+++.|+ ...+++|+||+|++||+++|+|+||||||||+++|+|+++ |. +|+|+++|+++....
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCcCCHH
Confidence 4789999999994 3579999999999999999999999999999999999997 65 899999999874311
Q ss_pred ------cccCCCChhhH----------HHHH----HH---------HHHHHHHHHhcCceE--------EEecCcccHHH
Q 026740 146 ------NRDLSFKAEDR----------VENI----RR---------IGEVAKLFADAGVIC--------IACLISPYRKD 188 (234)
Q Consensus 146 ------~~~~~~~~~~~----------~~~~----~~---------~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 188 (234)
...+++..++. .+.+ .. ...+...+...++.. ...++.+.+++
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 01122222211 0100 00 001112222222210 12234556677
Q ss_pred HHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 189 ~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..++++++..+.+ +++|||+..|+......+++.++
T Consensus 170 v~IArAL~~~P~l--lilDEPts~LD~~~~~~i~~lL~ 205 (330)
T PRK09473 170 VMIAMALLCRPKL--LIADEPTTALDVTVQAQIMTLLN 205 (330)
T ss_pred HHHHHHHHcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 7889999999998 89999999998888877776554
No 144
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.80 E-value=1.9e-19 Score=152.33 Aligned_cols=148 Identities=17% Similarity=0.105 Sum_probs=104.4
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCccccccc-----cccC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|++ + |++|+|.++|+++.... ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-VTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCcceEEECCEecCCCCHHHhhccce
Confidence 35789999998888999999999999999999999999999999999985 5 89999999998764210 0111
Q ss_pred CCChhh--------HHHHHHH-------------------HHHHHHHHHhcCce------EEE-ecCcccHHHHHHHHHh
Q 026740 150 SFKAED--------RVENIRR-------------------IGEVAKLFADAGVI------CIA-CLISPYRKDRDACRSM 195 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~l 195 (234)
++.+++ ..+.+.. ...+...+...++. ... .++.+.++....++.+
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 221111 0111100 00112222222221 111 2555667777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..++....+.+++.+++
T Consensus 160 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 189 (243)
T TIGR01978 160 LLEPKL--AILDEIDSGLDIDALKIVAEGINR 189 (243)
T ss_pred hcCCCE--EEecCCcccCCHHHHHHHHHHHHH
Confidence 999998 899999999988888888887764
No 145
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3.6e-20 Score=159.66 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=107.1
Q ss_pred ccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026740 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~ 148 (234)
++++++|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-PQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEecCcCCHHHHhcc
Confidence 4788999999995 5679999999999999999999999999999999999988 89999999998874211 111
Q ss_pred CCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026740 149 LSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 149 ~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
+++.+++. .+++... ..+..++...++. ....++.+.++....+++++..+.+
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l- 163 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI- 163 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence 23322221 1111110 0011112222221 1123345566777889999999998
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+......+++.+++
T Consensus 164 -llLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 164 -IIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred -EEEeCCcccCCHHHHHHHHHHHHH
Confidence 899999999998888888887764
No 146
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=3.6e-19 Score=146.17 Aligned_cols=146 Identities=13% Similarity=0.078 Sum_probs=100.9
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh--
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-- 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~-- 154 (234)
++++|+++.|++..+++ +||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++.......+++.++
T Consensus 2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-PSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCcccChhhhhhEEeccCCc
Confidence 56789999998765555 999999999999999999999999999999988 89999999998764211000011110
Q ss_pred ------hHHHHHHHH-------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026740 155 ------DRVENIRRI-------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216 (234)
Q Consensus 155 ------~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R 216 (234)
...+++... ..+...+...++. ....++.+.++....+++++..+.+ +++|||+..++..
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~--lllDEP~~~LD~~ 157 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL--WLLDEVETNLSKE 157 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHH
Confidence 111111110 0112222222221 1123455566677888999999988 8999999999888
Q ss_pred chhhHHHHHH
Q 026740 217 DPKGLYKLAR 226 (234)
Q Consensus 217 ~~~~l~~~~~ 226 (234)
....+++.++
T Consensus 158 ~~~~l~~~l~ 167 (195)
T PRK13541 158 NRDLLNNLIV 167 (195)
T ss_pred HHHHHHHHHH
Confidence 8888888775
No 147
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.4e-19 Score=143.62 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=98.9
Q ss_pred eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHH
Q 026740 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158 (234)
Q Consensus 79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~ 158 (234)
++++++.|.+..+++++||++++|++++|+|+||||||||+++|+|+++ +.+|+|+++|.++.. ....+...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~-------~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAK-------LPLEELRR 73 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEccc-------CCHHHHHh
Confidence 4678889987789999999999999999999999999999999999998 899999999987652 11111111
Q ss_pred HHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+++++| ++.+.++....++.++..+.+ +++|||+..++.+....+++.+++
T Consensus 74 ------~i~~~~q---------lS~G~~~r~~l~~~l~~~~~i--~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 74 ------RIGYVPQ---------LSGGQRQRVALARALLLNPDL--LLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred ------ceEEEee---------CCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 2222222 555666667788899988888 899999999998888888887764
No 148
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.80 E-value=9.9e-20 Score=152.41 Aligned_cols=148 Identities=15% Similarity=0.183 Sum_probs=100.9
Q ss_pred ceeeceeeecCC-------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc--Cc--cccccc
Q 026740 77 AKSTNILWHKNS-------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD--GD--NCRHGL 145 (234)
Q Consensus 77 ~~~~~l~~~~~~-------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~--g~--~v~~~~ 145 (234)
++++|+++.|++ ..+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++ |. ++....
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-PDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEEecCCCccchhhcC
Confidence 678899999962 479999999999999999999999999999999999988 899999998 42 332100
Q ss_pred --------cccCCCChhhH--------HHHHHH------------HHHHHHHHHhcCce------EEEecCcccHHHHHH
Q 026740 146 --------NRDLSFKAEDR--------VENIRR------------IGEVAKLFADAGVI------CIACLISPYRKDRDA 191 (234)
Q Consensus 146 --------~~~~~~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 191 (234)
...+++.+++. .+++.. ...+...+..+++. ....++.+.++....
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 00111111110 011100 00112222223321 122345556677788
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++.++..+.+ +++|||+..++......+++.+++
T Consensus 161 aral~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 194 (224)
T TIGR02324 161 ARGFIADYPI--LLLDEPTASLDAANRQVVVELIAE 194 (224)
T ss_pred HHHHhcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999988 899999999988888888887764
No 149
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.80 E-value=6.6e-19 Score=149.64 Aligned_cols=148 Identities=19% Similarity=0.167 Sum_probs=104.7
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccc------c
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG------L 145 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~------~ 145 (234)
++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |. +|+|.++|+++... .
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-LVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceEEEECCEEccccccchHHH
Confidence 578999999998889999999999999999999999999999999999987 77 99999999887421 0
Q ss_pred cccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce----E-----EEecCcccHHHHHHHHHhC
Q 026740 146 NRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI----C-----IACLISPYRKDRDACRSML 196 (234)
Q Consensus 146 ~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~ll 196 (234)
...+++.+++ ..+++... ..+...+...++. . ...++.+.++....+++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 0111221111 11111100 0111122222322 1 1223455667778899999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..++......+++.+++
T Consensus 161 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 161 VEPEV--LLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 99988 899999999988888888777654
No 150
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.80 E-value=2.5e-19 Score=153.14 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=106.7
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---------- 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~---------- 144 (234)
..++++|+++.|+++.+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccccccccccccc
Confidence 46889999999998899999999999999999999999999999999999988 8999999999876310
Q ss_pred -------ccccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCceE------EEecCcccHHHHH
Q 026740 145 -------LNRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC------IACLISPYRKDRD 190 (234)
Q Consensus 145 -------~~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 190 (234)
....+++.++ ...+++... ..+...+...++.. ...++.+.++...
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 0011221111 111221110 01122222233211 1233455667778
Q ss_pred HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+++++..+.+ +++|||+..++....+.+++.+++
T Consensus 163 laral~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 197 (257)
T PRK10619 163 IARALAMEPEV--LLFDEPTSALDPELVGEVLRIMQQ 197 (257)
T ss_pred HHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 89999999998 899999999998888888876553
No 151
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.80 E-value=2.5e-19 Score=154.05 Aligned_cols=150 Identities=17% Similarity=0.200 Sum_probs=105.6
Q ss_pred ccceeeceeeecCC---------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc
Q 026740 75 TVAKSTNILWHKNS---------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~ 145 (234)
++++++|++++|+. ..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGELLIDDHPLHFGD 81 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCc
Confidence 46889999999962 469999999999999999999999999999999999998 89999999998764210
Q ss_pred ----cccCCCChhhH----------HHHHHH-------------HHHHHHHHHhcCce------EEEecCcccHHHHHHH
Q 026740 146 ----NRDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI------CIACLISPYRKDRDAC 192 (234)
Q Consensus 146 ----~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 192 (234)
...+++.+++. .+.+.. ...+...+...++. ....++.+.++....+
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 01122211110 011100 00112223333321 1123445566777888
Q ss_pred HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.++..+.+ +++|||+..|+....+.+++.+++
T Consensus 162 ral~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 194 (267)
T PRK15112 162 RALILRPKV--IIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred HHHHhCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999988 899999999988888888877764
No 152
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.80 E-value=3e-19 Score=149.81 Aligned_cols=147 Identities=18% Similarity=0.056 Sum_probs=103.0
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh-h
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-D 155 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~-~ 155 (234)
+.++++++.|++.++++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|+++.... ....+.+. .
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~-~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSLLG-LGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEchhhc-ccccCCCCCc
Confidence 567889999999999999999999999999999999999999999999988 99999999998753111 00111110 0
Q ss_pred HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 156 RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 156 ~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
..+++... ..+...+...++. .+..++.+.++....++.++..+.+ +++|||+..++....
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEP~~gLD~~~~ 178 (224)
T cd03220 101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI--LLIDEVLAVGDAAFQ 178 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHH
Confidence 11111100 0111122222221 1233455566677889999999988 899999999988877
Q ss_pred hhHHHHHHc
Q 026740 219 KGLYKLARE 227 (234)
Q Consensus 219 ~~l~~~~~~ 227 (234)
+.+++.+++
T Consensus 179 ~~~~~~l~~ 187 (224)
T cd03220 179 EKCQRRLRE 187 (224)
T ss_pred HHHHHHHHH
Confidence 777776653
No 153
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.80 E-value=2.1e-19 Score=153.67 Aligned_cols=149 Identities=18% Similarity=0.124 Sum_probs=105.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-----ccccc-----
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHGL----- 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-----v~~~~----- 145 (234)
+++++|+++.|+++.+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|++ +....
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-PDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCccccccccccCCHHHHH
Confidence 6889999999988889999999999999999999999999999999999988 899999999987 43210
Q ss_pred ---cccCCCChhhH----------HHHHH------------H-HHHHHHHHHhcCce------EEEecCcccHHHHHHHH
Q 026740 146 ---NRDLSFKAEDR----------VENIR------------R-IGEVAKLFADAGVI------CIACLISPYRKDRDACR 193 (234)
Q Consensus 146 ---~~~~~~~~~~~----------~~~~~------------~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 193 (234)
...+++.+++. .+.+. . ...+...+..+++. ....++.+.++....++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 01112221111 00000 0 00111222223321 11223455667778899
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++..+.+ +++|||+..|+......+++.+++
T Consensus 165 al~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 196 (258)
T PRK11701 165 NLVTHPRL--VFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHhcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999988 899999999988888888887653
No 154
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.80 E-value=2.5e-19 Score=143.14 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=92.4
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhH
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~ 156 (234)
+.++++.|.|+..+ =..+++|+.||+++|+||||||||||++.|+|+.. |.+|+|.++|+|.+. ..|.+|
T Consensus 2 l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-P~~G~i~i~g~d~t~-------~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-PASGEILINGVDHTA-------SPPAER 71 (231)
T ss_pred ccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-CCCceEEEcCeecCc-------CCcccC
Confidence 45678899997654 35778899999999999999999999999999998 999999999999874 222222
Q ss_pred HHHHHHHHHHHHHHHhcCceEE------------------------------------------EecCcccHHHHHHHHH
Q 026740 157 VENIRRIGEVAKLFADAGVICI------------------------------------------ACLISPYRKDRDACRS 194 (234)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~ 194 (234)
-++++||..+++.. ..++.+.+++...++.
T Consensus 72 --------PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARc 143 (231)
T COG3840 72 --------PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARC 143 (231)
T ss_pred --------ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHH
Confidence 23333333333211 1223444555666777
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
++..-.+ +++|||++.|+.--+.++...+
T Consensus 144 lvR~~Pi--lLLDEPFsALdP~LR~eMl~Lv 172 (231)
T COG3840 144 LVREQPI--LLLDEPFSALDPALRAEMLALV 172 (231)
T ss_pred HhccCCe--EEecCchhhcCHHHHHHHHHHH
Confidence 7766666 7899999999776666655443
No 155
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.4e-19 Score=149.43 Aligned_cols=152 Identities=19% Similarity=0.206 Sum_probs=106.7
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--c--CCccEEEEcCcccccc-----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~--p~~G~i~~~g~~v~~~----- 144 (234)
.|+++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++. + |++|+|.++|+++...
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 467899999999988889999999999999999999999999999999999863 1 4789999999876421
Q ss_pred -ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHH
Q 026740 145 -LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRS 194 (234)
Q Consensus 145 -~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 194 (234)
....+++.++ ...+++... ..+...+...++. ....++.+.++....+++
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 163 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 0111122111 111221110 0111122222221 112345566677788999
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+.+ +++|||+..++......+++.+++
T Consensus 164 l~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14242 164 LAVEPEV--LLMDEPASALDPIATQKIEELIHE 194 (253)
T ss_pred HhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999988 899999999988888888877764
No 156
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=7.6e-19 Score=146.31 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=106.0
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-cccCCCCh
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NRDLSFKA 153 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-~~~~~~~~ 153 (234)
++++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ...+++.+
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-VESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCeeEEECCEEccchhhhhceEEee
Confidence 47899999999988889999999999999999999999999999999999988 89999999998764210 00011111
Q ss_pred h--------hHHHHHHHH---------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026740 154 E--------DRVENIRRI---------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211 (234)
Q Consensus 154 ~--------~~~~~~~~~---------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~ 211 (234)
+ ...+++... ..+...+...++.. ...++.+.++....++.++..+.+ +++|||+.
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~ 166 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL--WLLDEPYA 166 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence 1 111111110 01111222222211 122345566677888999999998 89999999
Q ss_pred hhhhcchhhHHHHHHc
Q 026740 212 VCEARDPKGLYKLARE 227 (234)
Q Consensus 212 ~l~~R~~~~l~~~~~~ 227 (234)
.++....+.+++.+++
T Consensus 167 ~LD~~~~~~l~~~l~~ 182 (214)
T PRK13543 167 NLDLEGITLVNRMISA 182 (214)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9988888888777753
No 157
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.9e-19 Score=156.18 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=105.5
Q ss_pred ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------ccc
Q 026740 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNR 147 (234)
Q Consensus 75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~ 147 (234)
++++++|+++.|+ +..+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++... ...
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-PSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCccEEEECCEECCCCcchHHHHHh
Confidence 3788999999996 5789999999999999999999999999999999999998 8999999999887310 001
Q ss_pred cCCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026740 148 DLSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 148 ~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
.+++.+++. .+++... ..+...+...++. ....++.+.++....+++++..+.+
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 122222211 1111100 0111122222221 1233455566777889999999988
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHH
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|||+..++......+++.++
T Consensus 163 --LilDEPt~gLD~~~~~~l~~~l~ 185 (283)
T PRK13636 163 --LVLDEPTAGLDPMGVSEIMKLLV 185 (283)
T ss_pred --EEEeCCccCCCHHHHHHHHHHHH
Confidence 89999999998888877777665
No 158
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.8e-19 Score=151.38 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=107.0
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------ 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------ 144 (234)
+.++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++++ |.+|+|+++|+++...
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence 478899999999988899999999999999999999999999999999999872 3799999999876420
Q ss_pred ccccCCCChh-------hHHHHHHHH--------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHH
Q 026740 145 LNRDLSFKAE-------DRVENIRRI--------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRS 194 (234)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 194 (234)
....+++.++ ...+++... ..+...+...++. ....++.+.++....++.
T Consensus 98 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 177 (267)
T PRK14235 98 LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA 177 (267)
T ss_pred HhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 0011111111 111111110 0112222222321 112345566777788999
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+.+ +++|||+..|+......+++.+++
T Consensus 178 l~~~p~l--llLDEPt~~LD~~~~~~l~~~L~~ 208 (267)
T PRK14235 178 IAVSPEV--ILMDEPCSALDPIATAKVEELIDE 208 (267)
T ss_pred HHcCCCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999998 899999999988888888877764
No 159
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-19 Score=158.08 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=104.7
Q ss_pred ceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-------
Q 026740 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------- 144 (234)
Q Consensus 77 ~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------- 144 (234)
++++|+++.|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-PTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHH
Confidence 678999999974 569999999999999999999999999999999999998 9999999999887421
Q ss_pred -ccccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhC
Q 026740 145 -LNRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSML 196 (234)
Q Consensus 145 -~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll 196 (234)
....+++..++ ..+++... ..+...+...++. ....++.+.++....++.++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 00112222221 11111100 0112222223321 11234455667778899999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|+|+..|+......+++.+++
T Consensus 162 ~~P~l--lllDEPt~~LD~~~~~~l~~~L~~ 190 (290)
T PRK13634 162 MEPEV--LVLDEPTAGLDPKGRKEMMEMFYK 190 (290)
T ss_pred cCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence 99998 899999999988888877776653
No 160
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3.1e-19 Score=155.00 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=104.8
Q ss_pred ceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026740 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------ 145 (234)
Q Consensus 77 ~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------ 145 (234)
++++|+++.|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-PTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHH
Confidence 678999999963 369999999999999999999999999999999999998 99999999998874310
Q ss_pred --cccCCCChhhH---------HHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhC
Q 026740 146 --NRDLSFKAEDR---------VENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSML 196 (234)
Q Consensus 146 --~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll 196 (234)
...+++.+++. .+++... ..+...+...++. ....++.+.++....++.++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 11223332221 1111110 0111122222321 11223455667778889999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|+|+..|+......+++.+++
T Consensus 162 ~~p~i--lllDEPt~~LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 162 MNPDI--IVLDEPTAGLDPQSKRQVMRLLKS 190 (286)
T ss_pred hCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence 99988 899999999988888888777763
No 161
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=1.2e-19 Score=150.31 Aligned_cols=147 Identities=19% Similarity=0.114 Sum_probs=102.6
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++|++++|+. ..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|.++.... ...+
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEhHHCCHHHHHhhE
Confidence 5788999999975 479999999999999999999999999999999999988 89999999998764210 0111
Q ss_pred CCChhh-------HHHHHHHH-----HHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026740 150 SFKAED-------RVENIRRI-----GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217 (234)
Q Consensus 150 ~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~ 217 (234)
++.+++ ..+++... ..+...+. .. .....++.+.++....++.++..+.+ +++|+|+..++...
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~-~~-~~~~~LS~G~~qrv~laral~~~p~l--lllDEP~~~LD~~~ 160 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-VS-EGGLNLSQGQRQLLCLARALLKRPRV--LVLDEATASIDYAT 160 (207)
T ss_pred EEEecCCcccCccHHHHhcccCCCCHHHHHHHhh-cc-CCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCcccCCHHH
Confidence 121111 11111100 00001111 00 01122344556667788999999988 89999999999988
Q ss_pred hhhHHHHHHc
Q 026740 218 PKGLYKLARE 227 (234)
Q Consensus 218 ~~~l~~~~~~ 227 (234)
.+.+++.+++
T Consensus 161 ~~~l~~~l~~ 170 (207)
T cd03369 161 DALIQKTIRE 170 (207)
T ss_pred HHHHHHHHHH
Confidence 8888888775
No 162
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=9.4e-19 Score=150.70 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=106.0
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~----- 144 (234)
..+++++|+++.|++..+++++||+|++||+++|+||||||||||+++|+|+++. |++|+|.++|.++...
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 3478999999999988899999999999999999999999999999999998762 4789999999876310
Q ss_pred -ccccCCCChhh-------HHHHHHHH-----------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026740 145 -LNRDLSFKAED-------RVENIRRI-----------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSML 196 (234)
Q Consensus 145 -~~~~~~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll 196 (234)
....+++.+++ ..+++... ..+...+...++ .....++.+.++....+++++
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~ 170 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 00111221111 11111100 001111121111 011234455666778899999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..|+......+++.+++
T Consensus 171 ~~p~l--llLDEPt~gLD~~~~~~l~~~l~~ 199 (269)
T PRK14259 171 IEPEV--ILMDEPCSALDPISTLKIEETMHE 199 (269)
T ss_pred cCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 99988 899999999998888888887764
No 163
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=1.4e-19 Score=151.18 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=101.9
Q ss_pred ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
++++|++++|++ ..+++++||++++|++++|+|+||||||||+++|+|++. |.+|+|.++|.++.... ...++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-LSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 578899999964 479999999999999999999999999999999999988 89999999998764210 00111
Q ss_pred CChhh-------HHHHHHH-----HHHHHHHHHhcCc----------------eEEEecCcccHHHHHHHHHhCCCCCce
Q 026740 151 FKAED-------RVENIRR-----IGEVAKLFADAGV----------------ICIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 151 ~~~~~-------~~~~~~~-----~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
+.+++ ..+++.. ...+...+...++ .....++.+.++....++.++..+.+
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l- 160 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI- 160 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE-
Confidence 11111 0111100 0000000111110 01123344566777889999999988
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|+|+..++....+.+++.+++
T Consensus 161 -lllDEP~~~LD~~~~~~l~~~l~~ 184 (221)
T cd03244 161 -LVLDEATASVDPETDALIQKTIRE 184 (221)
T ss_pred -EEEeCccccCCHHHHHHHHHHHHH
Confidence 899999999999888888888874
No 164
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=4.2e-19 Score=153.26 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=103.6
Q ss_pred ceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCC
Q 026740 77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~ 150 (234)
++++|+++.|+ ...+++|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.++.... ...++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-PQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEECCccccHHHHHhheE
Confidence 67899999995 5679999999999999999999999999999999999988 89999999998874211 01122
Q ss_pred CChhh---------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 151 FKAED---------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 151 ~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
+.+++ ..+++... ..+...+...++. ....++.+.++....+++++..+.+ +
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l 158 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC--L 158 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE--E
Confidence 21111 11111100 0111112222221 1233455666777889999999999 8
Q ss_pred EEeCChhhhhhcchhhHHHHHH
Q 026740 205 FMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++|||+..++......+++.++
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHH
Confidence 9999999998888777777765
No 165
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=9e-19 Score=150.64 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=108.4
Q ss_pred ccCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc--
Q 026740 71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-- 144 (234)
Q Consensus 71 ~~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~-- 144 (234)
....++++++|++++|+++++++++||++.+||+++|+|+||||||||+++|+|++.+ |++|+|.++|+++...
T Consensus 15 ~~~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 15 PEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CCCCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 3445688999999999988999999999999999999999999999999999999862 4799999999887421
Q ss_pred ----ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHH
Q 026740 145 ----LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDA 191 (234)
Q Consensus 145 ----~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 191 (234)
....+++.++ ...+++... ..+...+...++. ....++.+.++....
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 0111222111 111222110 0111112222221 112344556667788
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++++..+.+ +++|+|+..|+......+++.+++
T Consensus 175 aral~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 208 (267)
T PRK14237 175 ARAIAVKPDI--LLMDEPASALDPISTMQLEETMFE 208 (267)
T ss_pred HHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 8999999988 899999999998888888877764
No 166
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.4e-20 Score=153.97 Aligned_cols=148 Identities=20% Similarity=0.184 Sum_probs=101.7
Q ss_pred ceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026740 77 AKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (234)
Q Consensus 77 ~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~ 151 (234)
++++|+++.|++ ..+++++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...+++
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-PQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 578999999974 579999999999999999999999999999999999988 89999999998764210 011122
Q ss_pred ChhhH-------HHHHHHH------HHHH---------HHHHhc--Cc-----eEEEecCcccHHHHHHHHHhCCCCCce
Q 026740 152 KAEDR-------VENIRRI------GEVA---------KLFADA--GV-----ICIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 152 ~~~~~-------~~~~~~~------~~~~---------~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
.+++. .+++... ..+. ..+... +. .....++.+.++....++.++..+.+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l- 160 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI- 160 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE-
Confidence 11111 0110000 0000 000000 00 00123445566777889999999998
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+....+.+++.+++
T Consensus 161 -lllDEP~~~LD~~~~~~l~~~l~~ 184 (229)
T cd03254 161 -LILDEATSNIDTETEKLIQEALEK 184 (229)
T ss_pred -EEEeCccccCCHHHHHHHHHHHHH
Confidence 899999999988888888777764
No 167
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.7e-19 Score=156.67 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=106.0
Q ss_pred cceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------
Q 026740 76 VAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------ 144 (234)
Q Consensus 76 ~~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------ 144 (234)
.++++|+++.|++ ..+++|+||++++||+++|+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-PSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchH
Confidence 3678999999974 469999999999999999999999999999999999998 9999999999886421
Q ss_pred --ccccCCCChhhH---------HHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHh
Q 026740 145 --LNRDLSFKAEDR---------VENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 --~~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l 195 (234)
....+++.+++. .+++... ..+...+...++. ....++.+.++....++.+
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 001122222211 1111100 0112222233331 1133455667777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..|+......+++.+++
T Consensus 161 ~~~p~l--LlLDEPt~gLD~~~~~~l~~~l~~ 190 (287)
T PRK13641 161 AYEPEI--LCLDEPAAGLDPEGRKEMMQLFKD 190 (287)
T ss_pred HcCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888877764
No 168
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.5e-19 Score=152.21 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=101.3
Q ss_pred ceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 77 AKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
++++|+++.|++. .+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 3578999999765 79999999999999999999999999999999999998 89999999998764210 00011
Q ss_pred CChhh-------HHHHHHH---------HH------HHHHHHHhc--Cce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAED-------RVENIRR---------IG------EVAKLFADA--GVI-----CIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~~-------~~~~~~~---------~~------~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.+++ ..+++.. .. .+...+... +.. ....++.+.++....+++++..+.+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 11110 1111100 00 001111111 111 0122345566777888999999988
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|+|+..|+......+++.+++
T Consensus 160 --llLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 160 --LILDEATSALDTESERLVQAALER 183 (234)
T ss_pred --EEEeCccccCCHHHHHHHHHHHHH
Confidence 899999999998888888887764
No 169
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.9e-19 Score=151.60 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=105.6
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----CccEEEEcCcccccc----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRHG---- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-----~~G~i~~~g~~v~~~---- 144 (234)
.++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ | .+|+|+++|+++...
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND-LVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCcCCCCceEEEECCEecccccccH
Confidence 457899999999988889999999999999999999999999999999999987 5 489999999876310
Q ss_pred --ccccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026740 145 --LNRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACR 193 (234)
Q Consensus 145 --~~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 193 (234)
....+++.+++ ..+++... ..+...+...++. ....++.+.++....++
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 01111111111 11111110 0111111211210 11234455667778899
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++..+.+ +++|||+..|+......+++.+++
T Consensus 164 al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 195 (254)
T PRK14273 164 TLAIEPNV--ILMDEPTSALDPISTGKIEELIIN 195 (254)
T ss_pred HHHcCCCE--EEEeCCCcccCHHHHHHHHHHHHH
Confidence 99999988 899999999998888888777764
No 170
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.2e-19 Score=151.23 Aligned_cols=151 Identities=16% Similarity=0.175 Sum_probs=105.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc----cCCccEEEEcCcccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHG------ 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~----~p~~G~i~~~g~~v~~~------ 144 (234)
++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++. .|++|+|.++|+++...
T Consensus 20 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred ceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 47899999999998889999999999999999999999999999999999753 15789999999887421
Q ss_pred ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026740 145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l 195 (234)
....+++.++ ...+++... ..+...+...++. ....++.+.++....++.+
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 0111122111 111111110 0011112222221 1123445566777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..|+......+++.+++
T Consensus 180 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 209 (268)
T PRK14248 180 AMKPAV--LLLDEPASALDPISNAKIEELITE 209 (268)
T ss_pred hCCCCE--EEEcCCCcccCHHHHHHHHHHHHH
Confidence 999988 899999999988888888877764
No 171
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4e-19 Score=153.22 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=104.2
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-ccCCCCh
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-~~~~~~~ 153 (234)
.++++|+++.|+ +..+++|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..... ..+++.+
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEhHHhhccceEEEec
Confidence 578899999995 5789999999999999999999999999999999999988 899999999987532100 0011111
Q ss_pred hh----------HHHHH---------------H-HHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026740 154 ED----------RVENI---------------R-RIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 154 ~~----------~~~~~---------------~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
++ ..+.+ . .-..+...+...++. ....++.+.++....+++++..+.+
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l- 163 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV- 163 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence 10 00000 0 000111122222221 1233455667777889999999988
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++....+.+++.+++
T Consensus 164 -lllDEPt~~LD~~~~~~l~~~L~~ 187 (272)
T PRK15056 164 -ILLDEPFTGVDVKTEARIISLLRE 187 (272)
T ss_pred -EEEeCCCccCCHHHHHHHHHHHHH
Confidence 899999999988888888877753
No 172
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=7.6e-20 Score=154.17 Aligned_cols=143 Identities=19% Similarity=0.222 Sum_probs=101.1
Q ss_pred ccceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc--c---cccc
Q 026740 75 TVAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--G---LNRD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~--~---~~~~ 148 (234)
++++++++++.|++. .+++++||++++|+.++|+|+||||||||+++++|++. |.+|.|.++|.++.. . ....
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-CCCCEEEECCeeccchhhHHHhhcc
Confidence 367889999999765 89999999999999999999999999999999999999 999999999987541 0 0000
Q ss_pred ---------------------------CCCChhhHHHHHHHHHHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhC
Q 026740 149 ---------------------------LSFKAEDRVENIRRIGEVAKLFADAGV-----ICIACLISPYRKDRDACRSML 196 (234)
Q Consensus 149 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll 196 (234)
.+++.++ ... .+...+...++ .....++.+.+++..+|..+.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e---~~~---rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREE---IEE---RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHH---HHH---HHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH
Confidence 1112111 111 12222222222 122334555566667777777
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..+.+ +++|||++.|+.+....+.+.++
T Consensus 155 ~~P~i--liLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 155 MGPEI--LLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred cCCCE--EEEcCCCCCCCHHHHHHHHHHHH
Confidence 77777 89999999998877777666554
No 173
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.79 E-value=5.2e-19 Score=151.89 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=104.0
Q ss_pred cceeeceeeecC---------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-
Q 026740 76 VAKSTNILWHKN---------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL- 145 (234)
Q Consensus 76 ~~~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~- 145 (234)
+++++|+++.|+ ++.+++|+||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|+++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-PAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEccccCH
Confidence 467899999995 3679999999999999999999999999999999999988 99999999998764210
Q ss_pred ------cccCCCChhhH----------HHHHHH-------------HHHHHHHHHhcCce-E-----EEecCcccHHHHH
Q 026740 146 ------NRDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI-C-----IACLISPYRKDRD 190 (234)
Q Consensus 146 ------~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~ 190 (234)
...+++.+++. .+++.. ...+...+...++. . ...++.+.++...
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 01122211110 011100 00112223333331 1 1223455667778
Q ss_pred HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+++++..+.+ +++|||+..|+....+.+++.+++
T Consensus 161 laral~~~p~i--llLDEPt~~LD~~~~~~l~~~l~~ 195 (265)
T TIGR02769 161 IARALAVKPKL--IVLDEAVSNLDMVLQAVILELLRK 195 (265)
T ss_pred HHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 89999999988 899999999988877777777653
No 174
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1e-18 Score=148.93 Aligned_cols=149 Identities=19% Similarity=0.126 Sum_probs=105.0
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----CccEEEEcCccccc--c----
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH--G---- 144 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-----~~G~i~~~g~~v~~--~---- 144 (234)
+++++|+++.|++..+++|+||++.+||+++|+||||||||||+++|+|+++ | .+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE-LNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-cccCCCCceEEEECCEEccccccChHH
Confidence 6789999999988889999999999999999999999999999999999987 5 48999999987741 0
Q ss_pred ccccCCCChhh--------HHHHHHHH--------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026740 145 LNRDLSFKAED--------RVENIRRI--------------GEVAKLFADAGVI---------CIACLISPYRKDRDACR 193 (234)
Q Consensus 145 ~~~~~~~~~~~--------~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 193 (234)
....+++.+++ ..+++... ..+...+...++. ....++.+.++....++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 00111111111 11111110 0112222222221 11223445566778889
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++..+.+ +++|||+..++....+.+++.+++
T Consensus 163 al~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14267 163 ALAMKPKI--LLMDEPTANIDPVGTAKIEELLFE 194 (253)
T ss_pred HHhcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999988 899999999988888888887764
No 175
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.79 E-value=7.5e-19 Score=146.60 Aligned_cols=148 Identities=22% Similarity=0.239 Sum_probs=102.8
Q ss_pred ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
++++|+++.|++ +.+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++.... ...++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 568899999975 579999999999999999999999999999999999987 89999999998753210 00011
Q ss_pred CChh-------hHHHHHHHH------HHHHHHHHhcCc------e----------EEEecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAE-------DRVENIRRI------GEVAKLFADAGV------I----------CIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~-------~~~~~~~~~------~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.++ ...+++... ..+...+...++ . ....++.+.++....+++++..+.+
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 1111 111111000 000111111111 0 0123455667777889999999988
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+......+++.+++
T Consensus 162 --lllDEPt~~LD~~~~~~l~~~l~~ 185 (220)
T cd03245 162 --LLLDEPTSAMDMNSEERLKERLRQ 185 (220)
T ss_pred --EEEeCccccCCHHHHHHHHHHHHH
Confidence 899999999999999988888875
No 176
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.8e-19 Score=153.96 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=106.6
Q ss_pred ccceeeceeeecCC------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---
Q 026740 75 TVAKSTNILWHKNS------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--- 145 (234)
++++++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|++. |++|+|.++|.++....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeccccccHH
Confidence 46889999999963 469999999999999999999999999999999999998 89999999998874311
Q ss_pred --cccCCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026740 146 --NRDLSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 146 --~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~ 197 (234)
...+++.+++. .+.+... ..+...+...++. ....++.+.++....++.++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 11122222221 1111100 0111122222221 113345556677788999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||+..|+......+++.+++
T Consensus 162 ~p~l--lllDEPt~gLD~~~~~~l~~~l~~ 189 (280)
T PRK13633 162 RPEC--IIFDEPTAMLDPSGRREVVNTIKE 189 (280)
T ss_pred CCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 9988 899999999999888888877763
No 177
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=149.17 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=107.0
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~----- 144 (234)
.++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++++ |++|+|.++|+++...
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 4578999999999888899999999999999999999999999999999998862 3799999999876421
Q ss_pred -ccccCCCChh-------hHHHHHHHHH------------HHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026740 145 -LNRDLSFKAE-------DRVENIRRIG------------EVAKLFADAGVI---------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 -~~~~~~~~~~-------~~~~~~~~~~------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l 195 (234)
....+++.++ ...+++.... .+...+...++. ....++.+.++....++++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 169 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence 0111122111 1111111100 111122222221 1123445566777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..++......+++.+++
T Consensus 170 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 199 (258)
T PRK14268 170 AVKPKI--ILFDEPTSALDPISTARIEDLIMN 199 (258)
T ss_pred HcCCCE--EEEeCCCcccCHHHHHHHHHHHHH
Confidence 999988 899999999998888888887764
No 178
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=5e-19 Score=164.28 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=106.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~ 151 (234)
+++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++.... ...+++
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-LLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCceEEECCcccccCCHHHHHHHhce
Confidence 5789999999988889999999999999999999999999999999999988 89999999887653210 000111
Q ss_pred Chhh----------------HHHHHH----HHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAED----------------RVENIR----RIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~~----------------~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
.+++ ..+... .-..+...+...++. ....++.+.+++...++.++..+.+ +++
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llL 159 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL--LIL 159 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 1110 001000 000112222222221 2234456677788899999999988 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||+..|+....+.+++.+++
T Consensus 160 DEPt~~LD~~~~~~l~~~l~~ 180 (490)
T PRK10938 160 DEPFDGLDVASRQQLAELLAS 180 (490)
T ss_pred cCCcccCCHHHHHHHHHHHHH
Confidence 999999988888888777654
No 179
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.79 E-value=7e-19 Score=150.76 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=104.7
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGL------ 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~~------ 145 (234)
++++++|+++.|++..+++++||++.+||+++|+||||||||||+++|+|+++ |+ +|+|+++|.++....
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCCceEEEECCEecccccccchhH
Confidence 46889999999998899999999999999999999999999999999999987 54 599999998764210
Q ss_pred ---cccCCCChhh--------HHHHHHH--------------------HHHHHHHHHhcCce-----EEEecCcccHHHH
Q 026740 146 ---NRDLSFKAED--------RVENIRR--------------------IGEVAKLFADAGVI-----CIACLISPYRKDR 189 (234)
Q Consensus 146 ---~~~~~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 189 (234)
...+++.+++ ..+++.. ...+...+...++. ....++.+.++..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 0011111111 1111110 00111122222221 1123345566677
Q ss_pred HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+++++..+.+ +++|||+..|+......+++.+++
T Consensus 162 ~laral~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 197 (262)
T PRK09984 162 AIARALMQQAKV--ILADEPIASLDPESARIVMDTLRD 197 (262)
T ss_pred HHHHHHhcCCCE--EEecCccccCCHHHHHHHHHHHHH
Confidence 888999999988 899999999998888888877764
No 180
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.79 E-value=1.1e-18 Score=149.05 Aligned_cols=148 Identities=21% Similarity=0.240 Sum_probs=103.6
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFK 152 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~~ 152 (234)
++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++.... ...+++.
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 467899999998899999999999999999999999999999999999988 89999999998764210 0001111
Q ss_pred hhh--------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceE
Q 026740 153 AED--------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 153 ~~~--------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
+++ ..+++.. ...+...+...++. ....++.+.++....+++++..+.+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-- 158 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL-- 158 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence 111 1111110 00111112222221 1123445566777888999999988
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|+|+..++......+.+.+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHH
Confidence 899999999988888877777654
No 181
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.3e-18 Score=149.05 Aligned_cols=152 Identities=18% Similarity=0.173 Sum_probs=106.2
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~----- 144 (234)
...++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|++.+ |++|+|.++|+++...
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 3468899999999988899999999999999999999999999999999998751 4789999999886420
Q ss_pred -ccccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHH
Q 026740 145 -LNRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRS 194 (234)
Q Consensus 145 -~~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 194 (234)
....+++.+++ ..+++... ..+...+...++ .....++.+.++....+++
T Consensus 91 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 170 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170 (260)
T ss_pred HHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 01111111111 11111100 011112222221 1112345566677788999
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+.+ +++|||+..|+....+.+++.+++
T Consensus 171 l~~~p~l--llLDEPt~~LD~~~~~~l~~~L~~ 201 (260)
T PRK10744 171 IAIRPEV--LLLDEPCSALDPISTGRIEELITE 201 (260)
T ss_pred HHCCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999998 899999999988888888877764
No 182
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=148.11 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=106.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--cCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|++. .|.+|+|.++|+++.... ...+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4678999999998889999999999999999999999999999999999874 268999999998874310 0111
Q ss_pred CCChhh-------HHHHHHHH--------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHhCCCC
Q 026740 150 SFKAED-------RVENIRRI--------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 150 ~~~~~~-------~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
++.+++ ..+++... ..+...+...++. ....++.+.++....+++++..+
T Consensus 82 ~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 161 (246)
T PRK14269 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP 161 (246)
T ss_pred EEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 111111 11111100 0112222322331 11234555667778899999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+ +++|+|+..++......+++.+++
T Consensus 162 ~l--llLDEP~~~LD~~~~~~l~~~l~~ 187 (246)
T PRK14269 162 KL--LLLDEPTSALDPISSGVIEELLKE 187 (246)
T ss_pred CE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 99 899999999988888888887765
No 183
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=6.2e-19 Score=152.53 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=104.4
Q ss_pred ceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026740 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------ 145 (234)
Q Consensus 77 ~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------ 145 (234)
++++|+++.|++ .++++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-PTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccCHH
Confidence 678999999974 469999999999999999999999999999999999988 89999999998764210
Q ss_pred --cccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhC
Q 026740 146 --NRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSML 196 (234)
Q Consensus 146 --~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll 196 (234)
...+++.+++ ..+++... ..+...+...++. ....++.+.++....+++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 0112222221 11111110 0011122222321 11234556667778889999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..|+....+.+++.+++
T Consensus 162 ~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 190 (280)
T PRK13649 162 MEPKI--LVLDEPTAGLDPKGRKELMTLFKK 190 (280)
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 99988 899999999988888888887664
No 184
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.79 E-value=9.8e-19 Score=148.87 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=106.3
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh--cccCCccEEEEcCcccccccc---c-
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--LHWRGKLTYILDGDNCRHGLN---R- 147 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl--l~~p~~G~i~~~g~~v~~~~~---~- 147 (234)
.++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+ ++ |.+|+|+++|.++..... .
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-ILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-CCCceEEECCEEcccCChhhhhe
Confidence 3478999999999888899999999999999999999999999999999997 45 889999999987643110 0
Q ss_pred -cCCCChhh--------HHHHHHH-------------------HHHHHHHHHhcCce------EEE-ecCcccHHHHHHH
Q 026740 148 -DLSFKAED--------RVENIRR-------------------IGEVAKLFADAGVI------CIA-CLISPYRKDRDAC 192 (234)
Q Consensus 148 -~~~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~ 192 (234)
.+++.+++ ..+.+.. ...+...+...++. ... .++.+.++....+
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 01111110 0111100 00112222222221 111 2455666777889
Q ss_pred HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++++..+.+ +++|+|+..++......+++.+++
T Consensus 164 ~al~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 196 (252)
T CHL00131 164 QMALLDSEL--AILDETDSGLDIDALKIIAEGINK 196 (252)
T ss_pred HHHHcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999998 899999999998888888887764
No 185
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.79 E-value=6.2e-19 Score=146.85 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=101.7
Q ss_pred cCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026740 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF 151 (234)
Q Consensus 72 ~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~ 151 (234)
...++++++|++..|+++++|+|+|++|++||.++|+||||||||||+++++|.++ |++|.+.+.|+......
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-pssg~~~~~G~~~G~~~------ 99 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-PSSGDVTLLGRRFGKGE------ 99 (257)
T ss_pred CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-CCCCceeeeeeeccCCc------
Confidence 34568999999999999999999999999999999999999999999999999887 88999999988765311
Q ss_pred ChhhHHHHHHHHH--------------------------------------HHHHHHHhcCc-----eEEEecCcccHHH
Q 026740 152 KAEDRVENIRRIG--------------------------------------EVAKLFADAGV-----ICIACLISPYRKD 188 (234)
Q Consensus 152 ~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~-----~~~~~~~~~~~~~ 188 (234)
...+.++.++.+. ....++..++. ..+..++.+.++.
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 0022222221110 00001111110 0111112233344
Q ss_pred HHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 189 ~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
.-++|+++..+.+ +++|||++.++--.+..+...+.
T Consensus 180 vLiaRALv~~P~L--LiLDEP~~GLDl~~re~ll~~l~ 215 (257)
T COG1119 180 VLIARALVKDPEL--LILDEPAQGLDLIAREQLLNRLE 215 (257)
T ss_pred HHHHHHHhcCCCE--EEecCccccCChHHHHHHHHHHH
Confidence 4578899999999 89999999997777766666554
No 186
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.6e-19 Score=159.88 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=104.8
Q ss_pred ccceeeceeeec----CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc---CCccEEEEcCccccccc--
Q 026740 75 TVAKSTNILWHK----NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHGL-- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~---p~~G~i~~~g~~v~~~~-- 145 (234)
++++++|+++.| +...+++|+||+|++||+++|+|+||||||||+++|+|+++. +++|+|+++|+++....
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 368899999999 446799999999999999999999999999999999999852 47899999998874311
Q ss_pred ------cccCCCChhhH----------HHHHHH------------------HHHHHHHHHhcCceE--------EEecCc
Q 026740 146 ------NRDLSFKAEDR----------VENIRR------------------IGEVAKLFADAGVIC--------IACLIS 183 (234)
Q Consensus 146 ------~~~~~~~~~~~----------~~~~~~------------------~~~~~~~~~~~~~~~--------~~~~~~ 183 (234)
...+++..++. .+.+.. ...+...+...++.. ...++.
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 01122222111 011100 001222233333321 123455
Q ss_pred ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+++..++++++..+.+ +++|||+..|+......+.+.+++
T Consensus 162 G~~QRv~iArAL~~~P~l--lilDEPts~LD~~~~~~i~~lL~~ 203 (330)
T PRK15093 162 GECQKVMIAIALANQPRL--LIADEPTNAMEPTTQAQIFRLLTR 203 (330)
T ss_pred HHHHHHHHHHHHHCCCCE--EEEeCCCCcCCHHHHHHHHHHHHH
Confidence 667777889999999998 899999999987777777766653
No 187
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.6e-18 Score=146.01 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=105.1
Q ss_pred eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChhh
Q 026740 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAED 155 (234)
Q Consensus 78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~~ 155 (234)
+++|++++|+++.+++++||++++|++++|+|+||||||||+++|+|+++ |..|+|.++|+++.... ...+++.+++
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecc
Confidence 57899999988899999999999999999999999999999999999998 89999999998764311 1111111111
Q ss_pred --------HHHHHHHH------------HHHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 156 --------RVENIRRI------------GEVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 156 --------~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
..+++... ..+...+...++... ..++.+.++....+++++..+.+ +++|+|+
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~ 158 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV--LLLDEPL 158 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence 11111110 011122222233211 22345556677888999999988 8999999
Q ss_pred hhhhhcchhhHHHHHHc
Q 026740 211 QVCEARDPKGLYKLARE 227 (234)
Q Consensus 211 ~~l~~R~~~~l~~~~~~ 227 (234)
..++....+.+++.+++
T Consensus 159 ~gLD~~~~~~l~~~l~~ 175 (232)
T cd03300 159 GALDLKLRKDMQLELKR 175 (232)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999887764
No 188
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=1.8e-19 Score=173.40 Aligned_cols=149 Identities=19% Similarity=0.166 Sum_probs=106.3
Q ss_pred cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
.++++|++++|+ +..+++|+||++++||.++|+|+||||||||+|+|+|++. |++|+|++||.++..... ..+
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-PESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcCcCCHHHHHhcc
Confidence 478999999995 3579999999999999999999999999999999999998 999999999998864110 011
Q ss_pred CCChhh-------HHHHHH-----------HHHHH---HHHHHh-c-Cce-EE----EecCcccHHHHHHHHHhCCCCCc
Q 026740 150 SFKAED-------RVENIR-----------RIGEV---AKLFAD-A-GVI-CI----ACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 150 ~~~~~~-------~~~~~~-----------~~~~~---~~~~~~-~-~~~-~~----~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
++.+++ .++++. ...+. ...... + +.- .+ ..++.+.+++-..+|+++..+.+
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i 609 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609 (686)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 111111 011111 00010 111111 0 110 11 22355677888899999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||++.++....+.+++.+++
T Consensus 610 --LiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 610 --LLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred --EEEeCCccCCCHHHHHHHHHHHHH
Confidence 899999999999988888888775
No 189
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.79 E-value=6.4e-19 Score=148.93 Aligned_cols=148 Identities=22% Similarity=0.222 Sum_probs=105.3
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~ 154 (234)
++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++.... ...+++.++
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-PDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcCEEEEec
Confidence 357899999998899999999999999999999999999999999999988 89999999998864311 111111111
Q ss_pred h--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026740 155 D--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (234)
Q Consensus 155 ~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P 209 (234)
+ ..+++... ..+...+...++.. ...++.+.++....+++++..+.+ +++|+|
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP 157 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV--LLLDEP 157 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence 1 11111110 01112222222211 123445566777889999999988 899999
Q ss_pred hhhhhhcchhhHHHHHHc
Q 026740 210 LQVCEARDPKGLYKLARE 227 (234)
Q Consensus 210 ~~~l~~R~~~~l~~~~~~ 227 (234)
+..++......+++.+.+
T Consensus 158 ~~~LD~~~~~~~~~~l~~ 175 (237)
T TIGR00968 158 FGALDAKVRKELRSWLRK 175 (237)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999998888888887764
No 190
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.79 E-value=1.9e-19 Score=150.93 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=104.8
Q ss_pred CcccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----
Q 026740 73 NSTVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---- 145 (234)
Q Consensus 73 ~~~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---- 145 (234)
..++++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-PQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCcEEEECCCchHHcCHHHH
Confidence 3457899999999974 469999999999999999999999999999999999988 89999999998764210
Q ss_pred cccCCCChhhH-------HHHHHH---------HHH------HHHHHHhc--CceE-----EEecCcccHHHHHHHHHhC
Q 026740 146 NRDLSFKAEDR-------VENIRR---------IGE------VAKLFADA--GVIC-----IACLISPYRKDRDACRSML 196 (234)
Q Consensus 146 ~~~~~~~~~~~-------~~~~~~---------~~~------~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~ll 196 (234)
...+++.+++. .+++.. ... +...+..+ ++.. ...++.+.++....++.++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 00111111110 011100 000 00111111 1111 1223445566778899999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..++......+++.+++
T Consensus 167 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 195 (226)
T cd03248 167 RNPQV--LILDEATSALDAESEQQVQQALYD 195 (226)
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 99998 899999999998888888887764
No 191
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.79 E-value=6e-19 Score=164.18 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=107.4
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|++++|++..+++|+||++.+|++++|+||||||||||+|+|+|+++ |++|+|.++|.++.... ...+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-RDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCE
Confidence 36889999999998889999999999999999999999999999999999998 89999999998763210 0111
Q ss_pred CCChhh--------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAED--------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+++ ..+++.. ...+...+...++. ....++.+.++....+++++..+.
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 111111 0010000 00122223333321 123345666777889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.|+......+++.+++
T Consensus 162 l--llLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 162 V--IIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred E--EEEeCCcCCCCHHHHHHHHHHHHH
Confidence 9 899999999988888888766654
No 192
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.79 E-value=1.1e-19 Score=153.29 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=101.5
Q ss_pred ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
++++|+++.|+. ..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|.++.... ...++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEE
Confidence 357899999963 579999999999999999999999999999999999998 89999999998764210 00111
Q ss_pred CChhh-------HHHHHH---------HHHHH------HHHHHhc--Cc-----eEEEecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAED-------RVENIR---------RIGEV------AKLFADA--GV-----ICIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~~-------~~~~~~---------~~~~~------~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.+++ ..+++. .+... ...+... +. .....++.+.++....+++++..+.+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 11111 001100 00000 0001000 00 01123455566777889999999988
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++......+++.+++
T Consensus 160 --lllDEP~~~LD~~~~~~l~~~l~~ 183 (237)
T cd03252 160 --LIFDEATSALDYESEHAIMRNMHD 183 (237)
T ss_pred --EEEeCCcccCCHHHHHHHHHHHHH
Confidence 899999999998888888888764
No 193
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.79 E-value=1.7e-19 Score=152.38 Aligned_cols=148 Identities=19% Similarity=0.218 Sum_probs=100.6
Q ss_pred ceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 77 AKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 77 ~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
++++|+++.|++ ..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|.++.... ...+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-PTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-CCCCEEEECCEehhhcCHHHHHhhE
Confidence 357899999964 469999999999999999999999999999999999988 89999999998764210 0011
Q ss_pred CCChhhH-------HHHHHH---------HH---H---HHHHHHhc--Cce-----EEEecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAEDR-------VENIRR---------IG---E---VAKLFADA--GVI-----CIACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~~~-------~~~~~~---------~~---~---~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+++. .+.+.. .. . +....... +.. ....++.+.++....++.++..+.
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 1211110 011100 00 0 00000000 000 012234455666778889999998
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||+..|+......+++.+++
T Consensus 160 l--lllDEP~~gLD~~~~~~l~~~l~~ 184 (238)
T cd03249 160 I--LLLDEATSALDAESEKLVQEALDR 184 (238)
T ss_pred E--EEEeCccccCCHHHHHHHHHHHHH
Confidence 8 899999999998888888888864
No 194
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.79 E-value=1.1e-19 Score=156.84 Aligned_cols=148 Identities=18% Similarity=0.131 Sum_probs=101.9
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC--------ccEEEEcCcccccccc--
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--------KLTYILDGDNCRHGLN-- 146 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~--------~G~i~~~g~~v~~~~~-- 146 (234)
++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |. +|+|.++|+++.....
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEEcccCCHHH
Confidence 678999999998899999999999999999999999999999999999987 76 8999999987642100
Q ss_pred --ccCCCChh--------hHHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHh
Q 026740 147 --RDLSFKAE--------DRVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 147 --~~~~~~~~--------~~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l 195 (234)
..+++.++ ...+++.. ...+...+...++. ....++.+.++....++.+
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 00011000 11111100 00111122222221 1223445556667788888
Q ss_pred C---------CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 L---------PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l---------~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ ..+.+ +++|||+..++....+.+++.+++
T Consensus 161 ~~~~~~~~~~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 199 (272)
T PRK13547 161 AQLWPPHDAAQPPRY--LLLDEPTAALDLAHQHRLLDTVRR 199 (272)
T ss_pred hccccccccCCCCCE--EEEcCccccCCHHHHHHHHHHHHH
Confidence 8 36777 899999999998888888887764
No 195
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=9.4e-19 Score=152.15 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=102.7
Q ss_pred cceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------
Q 026740 76 VAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------ 144 (234)
Q Consensus 76 ~~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------ 144 (234)
+++++|+++.|+. ..+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-PTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECCEECccccccccH
Confidence 3678999999963 259999999999999999999999999999999999998 9999999999886410
Q ss_pred --ccccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHh
Q 026740 145 --LNRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 --~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l 195 (234)
....+++..++ ..+++... ..+...+...++. ....++.+.++....++.+
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 00111221111 11111110 0112222222221 1123345566777888999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+..+.+ +++|||+..|+......+++.++
T Consensus 160 ~~~p~i--llLDEPt~gLD~~~~~~l~~~l~ 188 (288)
T PRK13643 160 AMEPEV--LVLDEPTAGLDPKARIEMMQLFE 188 (288)
T ss_pred HhCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence 999988 89999999998888877777664
No 196
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.7e-18 Score=148.13 Aligned_cols=151 Identities=18% Similarity=0.174 Sum_probs=105.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG------ 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~------ 144 (234)
++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.+ | .+|+|+++|+++...
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 478999999999988899999999999999999999999999999999998862 2 589999999887420
Q ss_pred ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026740 145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l 195 (234)
....+++.++ ...+++... ..+...+...++. ....++.+.++....++.+
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral 170 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL 170 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 0011122111 111111100 0111122222221 1122345566777888999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..|+......+++.+++
T Consensus 171 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 200 (259)
T PRK14274 171 ATNPDV--LLMDEPTSALDPVSTRKIEELILK 200 (259)
T ss_pred hcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888877764
No 197
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.79 E-value=8.3e-19 Score=148.89 Aligned_cols=148 Identities=14% Similarity=0.018 Sum_probs=101.9
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcCccccccc-----cccCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGL-----NRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g~~v~~~~-----~~~~~ 150 (234)
++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++. .|.+|+|.++|.++.... ...++
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence 678999999988889999999999999999999999999999999999852 388999999998764211 01122
Q ss_pred CChhhH--------HHHHHH-------------------HHHHHHHHHhcCce------EE-EecCcccHHHHHHHHHhC
Q 026740 151 FKAEDR--------VENIRR-------------------IGEVAKLFADAGVI------CI-ACLISPYRKDRDACRSML 196 (234)
Q Consensus 151 ~~~~~~--------~~~~~~-------------------~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~ll 196 (234)
+..++. ...... ...+...+...++. .. ..++.+.++....+++++
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 211110 000000 00001111111110 01 134556677778899999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..+.+ +++|||+..++....+.+++.++
T Consensus 162 ~~p~i--llLDEPt~~LD~~~~~~l~~~l~ 189 (248)
T PRK09580 162 LEPEL--CILDESDSGLDIDALKIVADGVN 189 (248)
T ss_pred cCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 99998 89999999998888888877554
No 198
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.6e-19 Score=151.41 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=103.9
Q ss_pred ceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------cccC
Q 026740 77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDL 149 (234)
Q Consensus 77 ~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------~~~~ 149 (234)
++++|+++.|+ ...+++++||++++||+++|+|+||||||||+|+|+|+++ |.+|+|+++|.++.... ...+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-PTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEECccccchHHHHHhhe
Confidence 67899999996 4679999999999999999999999999999999999998 89999999998873110 1112
Q ss_pred CCChhhH---------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026740 150 SFKAEDR---------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 150 ~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
++.+++. .+.+... ..+...+...++.. ...++.+.++....++.++..+.+
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l-- 158 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI-- 158 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence 2222221 1111100 01112222222211 122344556677888999999988
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++......+++.+++
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~ 182 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYD 182 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 899999999988888887777763
No 199
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.79 E-value=1.1e-19 Score=175.49 Aligned_cols=149 Identities=18% Similarity=0.167 Sum_probs=106.9
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++|++++|++ ..+++|+||++++||.++|+|+||||||||+++|+|++. |++|+|++||.++.... ...+
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-PWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEeHHHCCHHHHHhhe
Confidence 5889999999974 579999999999999999999999999999999999998 99999999999875311 0111
Q ss_pred CCChhhH-------HHHH------------HHHHHH---HHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAEDR-------VENI------------RRIGEV---AKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~~~-------~~~~------------~~~~~~---~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+++. ++++ ....+. ....... +.. .+ ..++.+.+++-..+|+++..+.
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 1111110 0111 000011 1111111 111 11 1234566778889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 636 i--liLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 636 I--LILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred E--EEEECccccCCHHHHHHHHHHHHh
Confidence 9 899999999999999999988876
No 200
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.7e-18 Score=139.84 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=103.4
Q ss_pred cceeeceeeecCCcc--ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc------
Q 026740 76 VAKSTNILWHKNSVD--KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR------ 147 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~------ 147 (234)
.+.+++++.+|+++. +++|+|++|.+||.++++||||||||||++.++|+.. |..|+|.++|+.+..+...
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-cccceEEECCEeccCCCccceeEec
Confidence 466789999998876 9999999999999999999999999999999999998 9999999999987642210
Q ss_pred c-------------------CCCChhhHHHHHHHHHHHHHH--HHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 148 D-------------------LSFKAEDRVENIRRIGEVAKL--FADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 148 ~-------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
. .++...++++.. .+.... ++++....+..++.+.+++..+++++...+.+ +++
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a---~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~--LlL 156 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIA---HQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL--LLL 156 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHH---HHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce--Eee
Confidence 0 112222221111 111111 23333344556677788888999999999998 899
Q ss_pred eCChhhhhhcchhhHH
Q 026740 207 DVPLQVCEARDPKGLY 222 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~ 222 (234)
|+|+..++.-.++.+-
T Consensus 157 DEPfgAlDa~tRe~mQ 172 (259)
T COG4525 157 DEPFGALDALTREQMQ 172 (259)
T ss_pred cCchhhHHHHHHHHHH
Confidence 9999999766655543
No 201
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=7.5e-19 Score=150.28 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=104.4
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------c
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------L 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------~ 145 (234)
.++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.+ |++|+|.++|+++... .
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 57899999999888899999999999999999999999999999999998862 2699999999876310 0
Q ss_pred cccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHh
Q 026740 146 NRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSM 195 (234)
Q Consensus 146 ~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l 195 (234)
...+++..+ ...+++... ..+...+...++ .....++.+.++....++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 011111111 111111100 011112222222 11133455666777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..++......+++.+++
T Consensus 164 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 193 (258)
T PRK14241 164 AVEPDV--LLMDEPCSALDPISTLAIEDLINE 193 (258)
T ss_pred hcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888777654
No 202
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.7e-19 Score=149.94 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=105.4
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCccccccc-----
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHGL----- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~~----- 145 (234)
++++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|++++ |.+|+|.++|.++....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 478899999999888899999999999999999999999999999999998762 26899999998874210
Q ss_pred -cccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026740 146 -NRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 146 -~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l 195 (234)
...+++.++ ...+++... ..+...+...++. ....++.+.++....++.+
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 111111111 111111110 0111122222211 1123345566677888999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|+|+..|+......+++.+++
T Consensus 163 ~~~p~l--lllDEP~~~LD~~~~~~l~~~L~~ 192 (251)
T PRK14270 163 AVKPDV--ILMDEPTSALDPISTLKIEDLMVE 192 (251)
T ss_pred hcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888887764
No 203
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.78 E-value=1.3e-18 Score=162.34 Aligned_cols=150 Identities=19% Similarity=0.234 Sum_probs=108.3
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-PDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHhCCE
Confidence 47899999999998889999999999999999999999999999999999998 89999999998764210 0011
Q ss_pred CCChhh--------HHHHHHH--------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 150 SFKAED--------RVENIRR--------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
++.+++ ..+++.. -..+...+...++.. ...++.+.++....+++++..+.+ +++||
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l--llLDE 166 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI--LILDE 166 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence 111111 1111100 011222233333321 123455667778899999999998 89999
Q ss_pred ChhhhhhcchhhHHHHHHc
Q 026740 209 PLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~~ 227 (234)
|+..|+......+++.+++
T Consensus 167 Pt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 167 PTASLTPAETERLFSRIRE 185 (510)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999988888888877654
No 204
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.78 E-value=2.8e-19 Score=164.42 Aligned_cols=147 Identities=23% Similarity=0.228 Sum_probs=100.0
Q ss_pred CcccceeeceeeecCC-----------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 73 NSTVAKSTNILWHKNS-----------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 73 ~~~~~~~~~l~~~~~~-----------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
..++++++|++++|.. +.+++||||++.+||+++|+|+||||||||+|+|+|++. |++|+|.++|+++
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDL 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEeCccc
Confidence 3568999999999973 478999999999999999999999999999999999998 8999999999872
Q ss_pred cccc-------------cc--cCCCChhhH-----HHHHH---------HHHHHHHHHHhcCceE------EEecCcccH
Q 026740 142 RHGL-------------NR--DLSFKAEDR-----VENIR---------RIGEVAKLFADAGVIC------IACLISPYR 186 (234)
Q Consensus 142 ~~~~-------------~~--~~~~~~~~~-----~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~~~~ 186 (234)
.... +. ..+++|... .+-+. +-..+..++..-++-. ...++.+.+
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 1100 00 011222110 00000 0001222233222211 122355667
Q ss_pred HHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHH
Q 026740 187 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (234)
Q Consensus 187 ~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~ 222 (234)
++..+|+++...+.+ +++|||++.|+........
T Consensus 436 QRvaIARALa~~P~l--li~DEp~SaLDvsvqa~Vl 469 (539)
T COG1123 436 QRVAIARALALEPKL--LILDEPVSALDVSVQAQVL 469 (539)
T ss_pred HHHHHHHHHhcCCCE--EEecCCccccCHHHHHHHH
Confidence 788899999999999 8999999999766554433
No 205
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.4e-18 Score=162.00 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=107.9
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|++++|++..+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.... ...+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-CCccEEEECCEECCCCCHHHHHHCCe
Confidence 46899999999998889999999999999999999999999999999999998 89999999998764211 0111
Q ss_pred CCChhh--------HHHHHHH-------------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026740 150 SFKAED--------RVENIRR-------------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~ 197 (234)
++.+++ ..+++.. ...+...+...++. ....++.+.+++...++.++.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 111111 0011100 00112223333321 123345566777788999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||++.|+......+++.+++
T Consensus 163 ~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 190 (510)
T PRK09700 163 DAKV--IIMDEPTSSLTNKEVDYLFLIMNQ 190 (510)
T ss_pred CCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9998 899999999988888888777654
No 206
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.7e-19 Score=154.71 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=104.4
Q ss_pred ccceeeceeeecCCc-----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-----
Q 026740 75 TVAKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----- 144 (234)
..++++|++++|++. .+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++...
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-SETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEccccccccc
Confidence 357899999999764 49999999999999999999999999999999999998 8999999999876310
Q ss_pred ----ccccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHH
Q 026740 145 ----LNRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACR 193 (234)
Q Consensus 145 ----~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 193 (234)
....+++.+++ ..+++... ..+...+...++. ....++.+.++....++
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 01112222221 11111100 0011122222221 11223455667778899
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++..+.+ +++|||+..|+....+.+++.+++
T Consensus 164 al~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~ 195 (289)
T PRK13645 164 IIAMDGNT--LVLDEPTGGLDPKGEEDFINLFER 195 (289)
T ss_pred HHHhCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999998 899999999988888888776653
No 207
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.6e-18 Score=147.29 Aligned_cols=152 Identities=20% Similarity=0.152 Sum_probs=106.1
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~----- 144 (234)
.++++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++.+ |.+|+|.++|.++...
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 4578999999999888899999999999999999999999999999999998862 3799999999887421
Q ss_pred -ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHH
Q 026740 145 -LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRS 194 (234)
Q Consensus 145 -~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 194 (234)
....+++.++ ...+++... ..+.......++. ....++.+.++....+++
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 182 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA 182 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence 0111111111 111111110 0011112222221 112344556677788999
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+.+ +++|||+..|+......+++.+++
T Consensus 183 l~~~p~l--llLDEPt~gLD~~~~~~l~~~L~~ 213 (272)
T PRK14236 183 IAIEPEV--LLLDEPTSALDPISTLKIEELITE 213 (272)
T ss_pred HHCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999998 899999999988888777777664
No 208
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=5.2e-19 Score=151.26 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=104.3
Q ss_pred CcccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----c
Q 026740 73 NSTVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----N 146 (234)
Q Consensus 73 ~~~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~ 146 (234)
....++++|++++|+. ..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|+++.... .
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-IFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-CCCCeEEECCEEhhhCCHHHHh
Confidence 3457899999999976 579999999999999999999999999999999999988 89999999998764211 0
Q ss_pred ccCCCChhh-------HHHHH-----------HHHH---HHHHHHHhc--CceE-----EEecCcccHHHHHHHHHhCCC
Q 026740 147 RDLSFKAED-------RVENI-----------RRIG---EVAKLFADA--GVIC-----IACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 147 ~~~~~~~~~-------~~~~~-----------~~~~---~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~ll~~ 198 (234)
..+++.+++ ..+++ .... .+...+... +... ...++.+.++....+++++..
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 011111110 00000 0000 001111111 1100 012344566677889999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+ +++|+|+..++......+++.+++
T Consensus 175 p~l--lllDEPt~gLD~~~~~~l~~~l~~ 201 (257)
T cd03288 175 SSI--LIMDEATASIDMATENILQKVVMT 201 (257)
T ss_pred CCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 988 899999999988888888877764
No 209
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.7e-18 Score=143.61 Aligned_cols=146 Identities=17% Similarity=0.187 Sum_probs=101.1
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~ 154 (234)
++++|+++.|++.. .++||++.+||+++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...+++.++
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-PQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCcCCHhHccEEEEec
Confidence 35789999998654 39999999999999999999999999999999998 89999999998764210 000111111
Q ss_pred --------hHHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026740 155 --------DRVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (234)
Q Consensus 155 --------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P 209 (234)
...+++.. -..+...+...++. ....++.+.++....+++++..+.+ +++|||
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l--lllDEP 155 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV--LLLDEP 155 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence 11111110 00122222222321 1233455667777889999999988 899999
Q ss_pred hhhhhhcchhhHHHHHHc
Q 026740 210 LQVCEARDPKGLYKLARE 227 (234)
Q Consensus 210 ~~~l~~R~~~~l~~~~~~ 227 (234)
+..++....+.+++.+++
T Consensus 156 ~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 156 FAALDPALRAEMLDLVLD 173 (211)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999988888888877763
No 210
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.2e-18 Score=143.80 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=97.8
Q ss_pred cceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcCccccccccccCCCCh
Q 026740 76 VAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g~~v~~~~~~~~~~~~ 153 (234)
+++++|++..-+++ .+|+++|++|++||+++|+||||||||||+++|+|.-. ..++|+|.++|+|+.. +++
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~-------l~~ 75 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE-------LSP 75 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc-------CCH
Confidence 68899999999885 99999999999999999999999999999999999642 2678999999999975 333
Q ss_pred hhHH--------------------HHHHH---------------HHHHHHHHHhc-------CceEEEecCcccHHHHHH
Q 026740 154 EDRV--------------------ENIRR---------------IGEVAKLFADA-------GVICIACLISPYRKDRDA 191 (234)
Q Consensus 154 ~~~~--------------------~~~~~---------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 191 (234)
.+|+ ..++. ...+....... ....+.-|+.+.+++.++
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 3332 11110 00010011111 112234456667777788
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhH
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l 221 (234)
++-++-.+.+ .++|+|-+.++-..-+..
T Consensus 156 lQ~~~lePkl--~ILDE~DSGLDIdalk~V 183 (251)
T COG0396 156 LQLLLLEPKL--AILDEPDSGLDIDALKIV 183 (251)
T ss_pred HHHHhcCCCE--EEecCCCcCccHHHHHHH
Confidence 8888888888 899999999955444433
No 211
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.7e-19 Score=152.02 Aligned_cols=147 Identities=19% Similarity=0.183 Sum_probs=100.8
Q ss_pred eeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCCC
Q 026740 78 KSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFK 152 (234)
Q Consensus 78 ~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~~ 152 (234)
+++|+++.|+ +..+++++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|+++.... ...+++.
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-VSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 5789999995 5679999999999999999999999999999999999988 89999999998764210 0001111
Q ss_pred hhh-------HHHHHHHH------HHH---------HHHHHhc--Cc-----eEEEecCcccHHHHHHHHHhCCCCCceE
Q 026740 153 AED-------RVENIRRI------GEV---------AKLFADA--GV-----ICIACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 153 ~~~-------~~~~~~~~------~~~---------~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
+++ ..+++... ..+ ...+... +. .....++.+.++....++.++..+.+
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l-- 158 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI-- 158 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE--
Confidence 111 11111000 000 0000000 00 00123445566677889999999998
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|+|+..|+....+.+++.+++
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 899999999998888888887764
No 212
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1e-18 Score=154.07 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=105.0
Q ss_pred ccceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-----
Q 026740 75 TVAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----- 144 (234)
++++++|+++.|++ ..+++|+||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|.++...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-SKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCEEccccccccc
Confidence 57899999999964 359999999999999999999999999999999999998 9999999999776421
Q ss_pred ---------------ccccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecC
Q 026740 145 ---------------LNRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLI 182 (234)
Q Consensus 145 ---------------~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~ 182 (234)
....+++..++ ..+++... ..+...+...++. ....++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 00111221111 11111100 0111112222221 112344
Q ss_pred cccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 183 SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 183 ~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
.+.+++...++.++..+.+ +++|+|+..|+......+++.++
T Consensus 179 gGqkqRvaiAraL~~~p~i--LLLDEPtsgLD~~~~~~l~~~L~ 220 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEI--LIFDEPTAGLDPKGEHEMMQLIL 220 (320)
T ss_pred HHHHHHHHHHHHHHcCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence 5566777889999999999 89999999999888888887775
No 213
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=9.6e-19 Score=148.81 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=104.4
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------c
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------L 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------~ 145 (234)
+++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.+ |.+|+|.++|.++... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 67899999999888899999999999999999999999999999999998862 2789999999876421 0
Q ss_pred cccCCCChh-------hHHHHHHHHH-------------HHHHHHHhcCce---------EEEecCcccHHHHHHHHHhC
Q 026740 146 NRDLSFKAE-------DRVENIRRIG-------------EVAKLFADAGVI---------CIACLISPYRKDRDACRSML 196 (234)
Q Consensus 146 ~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ll 196 (234)
...+++.++ ...+++.... .+...+...++. ....++.+.++....+++++
T Consensus 83 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 111111111 1112111100 011112222221 11223445566778889999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|+|+..|+......+++.+++
T Consensus 163 ~~p~l--lllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14262 163 VEPEV--ILLDEPTSALDPIATQRIEKLLEE 191 (250)
T ss_pred CCCCE--EEEeCCccccCHHHHHHHHHHHHH
Confidence 99988 899999999988888888877764
No 214
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.8e-18 Score=147.30 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=105.3
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~----- 144 (234)
.++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.. |++|+|+++|+++...
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 3478999999999988899999999999999999999999999999999998752 3689999999876310
Q ss_pred -ccccCCCChh-------hHHHHHHHH-----------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026740 145 -LNRDLSFKAE-------DRVENIRRI-----------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSML 196 (234)
Q Consensus 145 -~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll 196 (234)
....+++.++ ...+++... ..+...+...+. .....++.+.++....+++++
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 0011111111 111111100 001111121111 111234555667778899999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..++......+++.+++
T Consensus 168 ~~p~l--llLDEPt~~LD~~~~~~l~~~L~~ 196 (264)
T PRK14243 168 VQPEV--ILMDEPCSALDPISTLRIEELMHE 196 (264)
T ss_pred cCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 99998 899999999998888888877764
No 215
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.78 E-value=9.1e-19 Score=149.46 Aligned_cols=148 Identities=18% Similarity=0.155 Sum_probs=104.5
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC----CccEEEEcCccccccc--cccC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHGL--NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p----~~G~i~~~g~~v~~~~--~~~~ 149 (234)
.++++|+++.| +..+++++||++.+||+++|+|+||||||||+++|+|+++ | ++|+|+++|+++.... ...+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeeccccccccceE
Confidence 57889999999 5689999999999999999999999999999999999987 7 8999999998763210 0111
Q ss_pred CCChhhH----------HHHHHH----------HHHHHHHHHhcCceE--------EEecCcccHHHHHHHHHhCCCCCc
Q 026740 150 SFKAEDR----------VENIRR----------IGEVAKLFADAGVIC--------IACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 150 ~~~~~~~----------~~~~~~----------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
++.+++. .+.... ...+...+...++.. ...++.+.++....+++++..+.+
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 161 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 1111110 010000 011222233333221 123455666777889999999988
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+......+++.+++
T Consensus 162 --LlLDEPt~~LD~~~~~~l~~~L~~ 185 (254)
T PRK10418 162 --IIADEPTTDLDVVAQARILDLLES 185 (254)
T ss_pred --EEEeCCCcccCHHHHHHHHHHHHH
Confidence 899999999998888888777764
No 216
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.9e-19 Score=155.98 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=104.8
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCccccccc----c
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCRHGL----N 146 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v~~~~----~ 146 (234)
+++++|+++.|++ ..+++++||++.+||+++|+||||||||||+++|+|++. |.+ |+|.++|+++.... .
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcCCHHHHH
Confidence 6889999999964 469999999999999999999999999999999999998 776 89999998875311 0
Q ss_pred ccCCCChhhH---------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCC
Q 026740 147 RDLSFKAEDR---------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 147 ~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
..+++.+++. .+++... ..+...+...++.. ...++.+.++....+++++..+.
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1122222211 1111100 01111222223211 12334556667788999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|+|+..++....+.+++.+++
T Consensus 164 l--lllDEPt~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 164 I--IILDESTSMLDPAGKEQILKLIRK 188 (282)
T ss_pred E--EEEECCcccCCHHHHHHHHHHHHH
Confidence 9 899999999988888877777653
No 217
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.9e-18 Score=146.93 Aligned_cols=153 Identities=17% Similarity=0.103 Sum_probs=107.0
Q ss_pred cCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccc--
Q 026740 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG-- 144 (234)
Q Consensus 72 ~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~-- 144 (234)
+..+.++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |+ +|+|.++|+++...
T Consensus 3 ~~~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 3 KLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred cccceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhcccc
Confidence 34567899999999988889999999999999999999999999999999999987 64 79999999876310
Q ss_pred ----ccccCCCCh-------hhHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHH
Q 026740 145 ----LNRDLSFKA-------EDRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDA 191 (234)
Q Consensus 145 ----~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 191 (234)
....+++.+ ....+++... ..+...+...++. ....++.+.++....
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred chHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 001111111 1111211110 0111112222211 112344556677788
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++.++..+.+ +++|||+..++....+.+++.+++
T Consensus 162 aral~~~p~v--llLDEP~~~LD~~~~~~l~~~l~~ 195 (261)
T PRK14258 162 ARALAVKPKV--LLMDEPCFGLDPIASMKVESLIQS 195 (261)
T ss_pred HHHHhcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999988 899999999988888888887764
No 218
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.78 E-value=1.8e-18 Score=143.79 Aligned_cols=145 Identities=16% Similarity=0.171 Sum_probs=100.9
Q ss_pred eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh-
Q 026740 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE- 154 (234)
Q Consensus 78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~- 154 (234)
+++|+++.|+. .+.++||++++|++++|+||||||||||+++|+|+++ |.+|+|+++|+++.... ...+++.++
T Consensus 2 ~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 2 ALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred eEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEcccCChhccceEEEecc
Confidence 57899999974 5689999999999999999999999999999999998 89999999998764211 111111111
Q ss_pred -------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 155 -------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 155 -------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
...+++... ..+...+...++. ....++.+.++....+++++..+.+ +++|+|+
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt 156 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI--LLLDEPF 156 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCC
Confidence 111111100 0111222222221 1123455666777888999999988 8999999
Q ss_pred hhhhhcchhhHHHHHHc
Q 026740 211 QVCEARDPKGLYKLARE 227 (234)
Q Consensus 211 ~~l~~R~~~~l~~~~~~ 227 (234)
..++......+++.+++
T Consensus 157 ~~LD~~~~~~~~~~l~~ 173 (213)
T TIGR01277 157 SALDPLLREEMLALVKQ 173 (213)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99988888888777654
No 219
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.78 E-value=1.4e-18 Score=149.55 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=103.8
Q ss_pred cceeeceeeecC---------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-
Q 026740 76 VAKSTNILWHKN---------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL- 145 (234)
Q Consensus 76 ~~~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~- 145 (234)
+++++|+++.|+ ++.+++|+||++.+|++++|+||||||||||+++|+|++. |.+|+|.++|+++....
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-PSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEeccccCh
Confidence 578999999997 4789999999999999999999999999999999999988 89999999998764210
Q ss_pred ------cccCCCChhhH----------HHHHHH-------------HHHHHHHHHhcCce------EEEecCcccHHHHH
Q 026740 146 ------NRDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI------CIACLISPYRKDRD 190 (234)
Q Consensus 146 ------~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 190 (234)
...+++.+++. .+.+.. ...+...+...++. ....++.+.++...
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 01111111110 011100 00112222222221 11223455667778
Q ss_pred HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++.++..+.+ +++|||+..|+....+.+++.+++
T Consensus 162 laral~~~p~l--llLDEPt~~LD~~~~~~~~~~l~~ 196 (268)
T PRK10419 162 LARALAVEPKL--LILDEAVSNLDLVLQAGVIRLLKK 196 (268)
T ss_pred HHHHHhcCCCE--EEEeCCCcccCHHHHHHHHHHHHH
Confidence 89999999998 899999999988777777776653
No 220
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.78 E-value=2e-19 Score=168.24 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=105.7
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
.++++|++++|++ .++++|+||++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.++..... ..+
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-PTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEehhhCCHHHHHhhe
Confidence 5889999999975 369999999999999999999999999999999999998 999999999998753210 001
Q ss_pred CCChhh-------HHHHHHH------------HH---HHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAED-------RVENIRR------------IG---EVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~~-------~~~~~~~------------~~---~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+++ .++++.. .. ......... +.- .+ ..++.+.+++-..+|+++..+.
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 111111 1111110 00 000111110 000 01 2245566778889999999998
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 479 i--lilDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 479 L--LLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred E--EEEeCcccccCHHHHHHHHHHHHH
Confidence 8 899999999999999988888875
No 221
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.4e-18 Score=148.69 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=105.3
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--C--CccEEEEcCcccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--R--GKLTYILDGDNCRHG------ 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p--~~G~i~~~g~~v~~~------ 144 (234)
+.++++|+++.|++..+++++||++++||+++|+|+||||||||+|+|+|++++ | .+|+|.++|+++...
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 468899999999888899999999999999999999999999999999998872 1 489999999876421
Q ss_pred ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026740 145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l 195 (234)
....+++.++ ...+++... ..+...+...++. ....++.+.++....++++
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 0011111111 111111100 0111222222221 1123445566677889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|+|+..++......+++.+++
T Consensus 166 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 195 (259)
T PRK14260 166 AIKPKV--LLMDEPCSALDPIATMKVEELIHS 195 (259)
T ss_pred hcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888887764
No 222
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=9.8e-19 Score=153.22 Aligned_cols=149 Identities=19% Similarity=0.129 Sum_probs=103.0
Q ss_pred cceeeceeeecCCc-----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------
Q 026740 76 VAKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------ 144 (234)
Q Consensus 76 ~~~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------ 144 (234)
+++++|+++.|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-PDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEEeceecccccccccc
Confidence 36789999999743 59999999999999999999999999999999999998 8999999987654100
Q ss_pred ----------------------ccccCCCChhh---------HHHHHHH------------HHHHHHHHHhcCce-----
Q 026740 145 ----------------------LNRDLSFKAED---------RVENIRR------------IGEVAKLFADAGVI----- 176 (234)
Q Consensus 145 ----------------------~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----- 176 (234)
....+++..++ ..+++.. ...+...+...++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 00112222221 1111110 00122222333321
Q ss_pred -EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 177 -CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 177 -~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
....++.+.++....++.++..+.+ +++|||+..|+......+++.+++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~l--LlLDEPt~~LD~~~~~~l~~~l~~ 210 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDF--LVFDEPTAGLDPQGVKEILEIFDN 210 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 1122345566677888999999998 899999999988888888877653
No 223
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.78 E-value=1.6e-19 Score=174.41 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=106.0
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~ 150 (234)
.++++|++++|+ +..+++|+||++++|+.++|+|+||||||||+++|+|++. |++|+|++||.++..... ..++
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ-ARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCCcEEEECCEEHHHcCHHHHHHheE
Confidence 578999999996 4679999999999999999999999999999999999998 999999999988753110 0111
Q ss_pred CChhh-------HHHHHH-------------HHHH---HHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCCC
Q 026740 151 FKAED-------RVENIR-------------RIGE---VAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 151 ~~~~~-------~~~~~~-------------~~~~---~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
+.+++ .++++. .... ........ +. ..+ ..++.+.+++...+|+++..+.
T Consensus 552 ~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ 631 (708)
T TIGR01193 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK 631 (708)
T ss_pred EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 11111 011111 0001 11111111 11 111 1235566778889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 632 i--liLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 632 V--LILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred E--EEEeCccccCCHHHHHHHHHHHHH
Confidence 9 899999999999888888888874
No 224
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.78 E-value=5.7e-19 Score=166.97 Aligned_cols=149 Identities=18% Similarity=0.256 Sum_probs=104.8
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++|++++|++ .++++|+||++++|+.++|+|+||||||||+++|+|+++ |.+|+|+++|.++.... ...+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-IDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC-CCCceEEECCEEhhhcCHHHHHhhc
Confidence 4889999999964 579999999999999999999999999999999999998 99999999998875311 0001
Q ss_pred CCChhh-------HHHHHH-------------HHHH---HHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCC
Q 026740 150 SFKAED-------RVENIR-------------RIGE---VAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 150 ~~~~~~-------~~~~~~-------------~~~~---~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~ 199 (234)
++.+++ .++++. .... ........ +. ..+ ..++.+.+++-..+|+++...
T Consensus 420 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 420 ALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred eEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 111111 011111 0000 01111111 11 111 123556677788999999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+ +++|||++.++....+.+++.+++
T Consensus 500 ~i--lilDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 500 PI--LILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred CE--EEEECccccCCHHHHHHHHHHHHH
Confidence 98 899999999988888888877765
No 225
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=147.71 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=105.2
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccC--CccEEEEcCccccccc-----
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWR--GKLTYILDGDNCRHGL----- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p--~~G~i~~~g~~v~~~~----- 145 (234)
++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+. .+| .+|+|.++|+++....
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 3678999999999888999999999999999999999999999999999973 214 4899999998874210
Q ss_pred -cccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026740 146 -NRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 146 -~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l 195 (234)
...+++.++ ...+++... ..+...+...++. ....++.+.++....++++
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 011121111 111111100 0111222222221 1123455566777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..++....+.+++.+++
T Consensus 162 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14245 162 AVSPSV--LLMDEPASALDPISTAKVEELIHE 191 (250)
T ss_pred hcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 999998 899999999998888888887764
No 226
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.8e-18 Score=148.29 Aligned_cols=152 Identities=15% Similarity=0.103 Sum_probs=107.9
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~----- 144 (234)
.+++.+++++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+ +.+|+|.++|+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4578889999999988999999999999999999999999999999999999872 2689999999886421
Q ss_pred -ccccCCCChh-------hHHHHHHHH-----------HHHHHHHHhcCceE---------EEecCcccHHHHHHHHHhC
Q 026740 145 -LNRDLSFKAE-------DRVENIRRI-----------GEVAKLFADAGVIC---------IACLISPYRKDRDACRSML 196 (234)
Q Consensus 145 -~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ll 196 (234)
....+++.++ ...+++... ..+...+...++.. ...++.+.++....+++++
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 0111121111 111222110 01222233333211 1224455667778889999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|+|+..++......+++.+++
T Consensus 166 ~~p~l--lllDEPtsgLD~~~~~~l~~~l~~ 194 (261)
T PRK14263 166 TEPEV--LLLDEPCSALDPIATRRVEELMVE 194 (261)
T ss_pred cCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 99988 899999999998888888888775
No 227
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.77 E-value=7.1e-19 Score=143.71 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=95.3
Q ss_pred cCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------ccccCCCChhh----
Q 026740 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLSFKAED---- 155 (234)
Q Consensus 86 ~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~~~~~~~~~---- 155 (234)
|++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... ....+++.+++
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 356678999999999999999999999999999999999988 8999999999876311 00111221111
Q ss_pred -----HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026740 156 -----RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (234)
Q Consensus 156 -----~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l 213 (234)
..+++... ..+...+...++.. ...++.+.++....+++++..+.+ +++|||+..+
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~L 158 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV--LLLDEPTAGL 158 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccC
Confidence 11111110 01112222222211 122345566677888999999988 8999999999
Q ss_pred hhcchhhHHHHHHc
Q 026740 214 EARDPKGLYKLARE 227 (234)
Q Consensus 214 ~~R~~~~l~~~~~~ 227 (234)
+....+.+++.+++
T Consensus 159 D~~~~~~~~~~l~~ 172 (190)
T TIGR01166 159 DPAGREQMLAILRR 172 (190)
T ss_pred CHHHHHHHHHHHHH
Confidence 98888888777654
No 228
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=8.1e-20 Score=144.74 Aligned_cols=130 Identities=19% Similarity=0.184 Sum_probs=98.4
Q ss_pred cceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026740 76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~ 151 (234)
+++++++++..+ ...+|++|++.|++||.++|+||||||||||+-.++|+-. |++|+|++.|+++.. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-~ssGeV~l~G~~L~~-------l 77 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-PSSGEVRLLGQPLHK-------L 77 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-CCCceEEEcCcchhh-------c
Confidence 566677776654 4679999999999999999999999999999999999877 999999999999974 6
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCceEEEec------------------------------------------CcccHHHH
Q 026740 152 KAEDRVENIRRIGEVAKLFADAGVICIACL------------------------------------------ISPYRKDR 189 (234)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~ 189 (234)
..+.+...+++ .++.+||.+.+.+.... +.+.+++.
T Consensus 78 dEd~rA~~R~~--~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRV 155 (228)
T COG4181 78 DEDARAALRAR--HVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRV 155 (228)
T ss_pred CHHHHHHhhcc--ceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHH
Confidence 76767665555 67778887766443211 11223444
Q ss_pred HHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026740 190 DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (234)
Q Consensus 190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~ 217 (234)
.+++++...+.+ ++-|+|+-.|+...
T Consensus 156 AiARAfa~~P~v--LfADEPTGNLD~~T 181 (228)
T COG4181 156 ALARAFAGRPDV--LFADEPTGNLDRAT 181 (228)
T ss_pred HHHHHhcCCCCE--EeccCCCCCcchhH
Confidence 667777777777 67788888775433
No 229
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.8e-18 Score=147.35 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=103.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc------c
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG------L 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~------~ 145 (234)
.++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|+++. | ++|+|+++|+++... .
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 57899999999888899999999999999999999999999999999998741 2 589999999887421 0
Q ss_pred cccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026740 146 NRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 146 ~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l 195 (234)
...+++.++ ...+++... ..+...+...++. ....++.+.++....++.+
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 111111111 111111100 0111122222221 1122445566677888999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|+|+..++......+++.+++
T Consensus 164 ~~~p~l--lllDEP~~gLD~~~~~~l~~~l~~ 193 (252)
T PRK14256 164 AVKPEV--ILMDEPASALDPISTLKIEELIEE 193 (252)
T ss_pred hcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888777664
No 230
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.5e-19 Score=164.06 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=101.7
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~ 148 (234)
.++++|++|.|.. +++++|+||+|++||+++|+|||||||||++.+|.+++. |++|+|.+||.|++..- +..
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~-PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD-PTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCeehhhcCHHHHHHH
Confidence 6899999999964 469999999999999999999999999999999999999 99999999999987421 011
Q ss_pred CCCChhhH-------H------------HHHHHHHHHHH---HHHhcC--c-eEE----EecCcccHHHHHHHHHhCCCC
Q 026740 149 LSFKAEDR-------V------------ENIRRIGEVAK---LFADAG--V-ICI----ACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 149 ~~~~~~~~-------~------------~~~~~~~~~~~---~~~~~~--~-~~~----~~~~~~~~~~~~~~~~ll~~~ 199 (234)
+++..++. . +.+...++.+. ....+. . ..+ ..++.+.+++-++||+++..+
T Consensus 544 Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 544 IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred eeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence 11111110 0 11111111111 011110 0 011 223556788889999999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHH
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKL 224 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~ 224 (234)
.+ +++||.++.|+.......-+.
T Consensus 624 ~V--LILDEATSALDaeSE~lVq~a 646 (716)
T KOG0058|consen 624 RV--LILDEATSALDAESEYLVQEA 646 (716)
T ss_pred CE--EEEechhhhcchhhHHHHHHH
Confidence 99 899999999977665444333
No 231
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.4e-18 Score=148.56 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=105.8
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc-----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG----- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~----- 144 (234)
.++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.. | .+|+|.++|+++...
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 3489999999999988899999999999999999999999999999999998752 2 589999999876320
Q ss_pred -ccccCCCChhh-------HHHHHHHHH-----------HHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026740 145 -LNRDLSFKAED-------RVENIRRIG-----------EVAKLFADAGV---------ICIACLISPYRKDRDACRSML 196 (234)
Q Consensus 145 -~~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll 196 (234)
....+++.+++ ..+++.... .+...+...++ .....++.+.++....+++++
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 01111121111 111111100 01111111111 111223455667778899999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..|+......+++.+++
T Consensus 178 ~~p~l--llLDEPt~~LD~~~~~~l~~~L~~ 206 (274)
T PRK14265 178 MKPDV--LLMDEPCSALDPISTRQVEELCLE 206 (274)
T ss_pred hCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 99998 899999999998888888887764
No 232
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.8e-18 Score=145.24 Aligned_cols=151 Identities=13% Similarity=0.136 Sum_probs=104.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------ 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------ 144 (234)
++++++|++++|++..+++++||++.+||+++|+|+||||||||+++|+|++++ |.+|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 367899999999988999999999999999999999999999999999998852 3689999999876320
Q ss_pred ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026740 145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l 195 (234)
....+++..+ ...+++... ..+...+...++. ....++.+.++....++++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 0111111111 111111100 0111122222221 1122344556677888999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..|+......+++.+++
T Consensus 163 ~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14251 163 AVRPKV--VLLDEPTSALDPISSSEIEETLME 192 (251)
T ss_pred hcCCCE--EEecCCCccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888777764
No 233
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.7e-18 Score=147.37 Aligned_cols=149 Identities=16% Similarity=0.179 Sum_probs=103.7
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccc------
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG------ 144 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~------ 144 (234)
+++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |. +|+|+++|+++...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD-LTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceeEEECCEEcccCccCHHH
Confidence 5788999999998899999999999999999999999999999999999986 43 79999999876420
Q ss_pred ccccCCCChh--------hHHHHHHHHH-------------HHHHHHHhcCc---------eEEEecCcccHHHHHHHHH
Q 026740 145 LNRDLSFKAE--------DRVENIRRIG-------------EVAKLFADAGV---------ICIACLISPYRKDRDACRS 194 (234)
Q Consensus 145 ~~~~~~~~~~--------~~~~~~~~~~-------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 194 (234)
....+++.++ ...+++.... .....+..... .....++.+.++....++.
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 0011111111 1111111100 00011111111 1122345556677788899
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+.+ +++|+|+..++....+.+++.+++
T Consensus 163 l~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14272 163 LAVEPEI--LLMDEPTSALDPASTARIEDLMTD 193 (252)
T ss_pred HhcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999988 899999999988888888887764
No 234
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.7e-18 Score=150.42 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=105.5
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--c--CCccEEEEcCcccccc-----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG----- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~--p~~G~i~~~g~~v~~~----- 144 (234)
.++++++|+++.|++..+++|+||++.+|++++|+|+||||||||+++|+|++. + |.+|+|.++|+++...
T Consensus 37 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred ceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 457899999999988889999999999999999999999999999999999753 2 3899999999876421
Q ss_pred -ccccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHH
Q 026740 145 -LNRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRS 194 (234)
Q Consensus 145 -~~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 194 (234)
....+++.+++ ..+++... ..+...+...++. ....++.+.++....+++
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra 196 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVART 196 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHH
Confidence 01111121111 11111100 0111112222211 112344556677788999
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+.+ +++|||+..|+......+++.+++
T Consensus 197 L~~~p~l--llLDEPt~gLD~~~~~~l~~~L~~ 227 (286)
T PRK14275 197 LAVEPEI--LLLDEPTSALDPKATAKIEDLIQE 227 (286)
T ss_pred HhcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999988 899999999988888888887764
No 235
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3e-18 Score=147.18 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=104.2
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCccccc---c---
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH---G--- 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~---~--- 144 (234)
..++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.+ | ++|+|.++|+++.. .
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 468899999999888899999999999999999999999999999999998862 1 68999999876531 0
Q ss_pred --ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026740 145 --LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACR 193 (234)
Q Consensus 145 --~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 193 (234)
....+++.++ ...+++... ..+...+...++. ....++.+.++....++
T Consensus 95 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 174 (265)
T PRK14252 95 IEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR 174 (265)
T ss_pred HHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence 0111222221 111222110 0111122222211 11223445566778889
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++..+.+ +++|+|+..++....+.+++.+++
T Consensus 175 al~~~p~l--lllDEPt~gLD~~~~~~l~~~l~~ 206 (265)
T PRK14252 175 ALATDPEI--LLFDEPTSALDPIATASIEELISD 206 (265)
T ss_pred HHHcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999988 899999999988888887777664
No 236
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-18 Score=161.98 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=107.0
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-CCccEEEEcCccccccc-----ccc
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHGL-----NRD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i~~~g~~v~~~~-----~~~ 148 (234)
++++++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++++ |++|+|+++|.++.... ...
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 468999999999988899999999999999999999999999999999999872 27999999998764210 011
Q ss_pred CCCChhh--------HHHHHHH---------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCC
Q 026740 149 LSFKAED--------RVENIRR---------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 149 ~~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
+++.+++ ..+++.. ...+...+...++. ....++.+.++....+++++..+.
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 163 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR 163 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 1111111 0011000 00122223333321 123345566777889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.|+......+++.+++
T Consensus 164 l--llLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 164 L--LILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred E--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 8 899999999988888888776653
No 237
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.6e-18 Score=146.44 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=106.6
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCccccccc----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHGL---- 145 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~~---- 145 (234)
.++++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|++++ |.+|+|.++|.++....
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 3478999999999988999999999999999999999999999999999999872 36899999998764210
Q ss_pred -cccCCCChh-------hHHHHHHHHH-------------HHHHHHHhcCceE---------EEecCcccHHHHHHHHHh
Q 026740 146 -NRDLSFKAE-------DRVENIRRIG-------------EVAKLFADAGVIC---------IACLISPYRKDRDACRSM 195 (234)
Q Consensus 146 -~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l 195 (234)
...+++.++ ...+++.... .+...+...++.. ...++.+.++....++.+
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 111112111 1112111100 0111122222211 123455566777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|+|+..++....+.+++.+++
T Consensus 179 ~~~p~l--llLDEPt~~LD~~~~~~l~~~L~~ 208 (276)
T PRK14271 179 AVNPEV--LLLDEPTSALDPTTTEKIEEFIRS 208 (276)
T ss_pred hcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888877764
No 238
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=4.9e-19 Score=167.81 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=104.9
Q ss_pred cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026740 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~ 150 (234)
.++++|+++.|++ ..+++|+||++++||.++|+|+||||||||+++|+|++. |++|+|++||.++..... ..++
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP-LTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEhhhCCHHHHHhheE
Confidence 4789999999964 579999999999999999999999999999999999998 999999999998763110 0111
Q ss_pred CChhh-------HHHHHHH-----------HHH---HHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCCce
Q 026740 151 FKAED-------RVENIRR-----------IGE---VAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 151 ~~~~~-------~~~~~~~-----------~~~---~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
+.+++ .++++.. ... ........ +.. .+ ..++.+.+++-..+|+++....+
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i- 497 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI- 497 (592)
T ss_pred EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE-
Confidence 11111 1111110 000 00111110 110 01 12345667788899999999988
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||++.++....+.+++.+++
T Consensus 498 -lllDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 498 -LILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred -EEEeCCcccCCHHHHHHHHHHHHH
Confidence 899999999998888888877764
No 239
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.4e-18 Score=148.14 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=104.3
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG------ 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~------ 144 (234)
++++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|++.. | .+|+|.++|+++...
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 478899999999988999999999999999999999999999999999998651 2 479999999886431
Q ss_pred ccccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026740 145 LNRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 ~~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l 195 (234)
....+++.+++ ..+++... ..+...+...++. ....++.+.++....++.+
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 00111111111 11111100 0111111212211 1123345566677888999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..++....+.+++.+++
T Consensus 165 ~~~p~l--llLDEP~~gLD~~~~~~l~~~l~~ 194 (253)
T PRK14261 165 AVNPEV--ILMDEPCSALDPIATAKIEDLIED 194 (253)
T ss_pred hcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999988 899999999988888888777764
No 240
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=5.5e-19 Score=152.75 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=104.7
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~ 148 (234)
+++++|+++.|++ ..+++++||++.+||+++|+|+||||||||+++|+|+++ |.+|+|+++|+++.... ...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-EFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEECCcCCHHHHhcc
Confidence 5789999999974 358999999999999999999999999999999999998 99999999998864311 111
Q ss_pred CCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026740 149 LSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 149 ~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
+++.+++. .+++... ..+...+...++. ....++.+.++....++.++..+.+
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l- 161 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI- 161 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence 22222211 1111100 0111112222221 1123345566777889999999998
Q ss_pred EEEEeCChhhhhhcchhhHHHHHH
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|+|+..++....+.+++.++
T Consensus 162 -lllDEPt~~LD~~~~~~l~~~l~ 184 (277)
T PRK13642 162 -IILDESTSMLDPTGRQEIMRVIH 184 (277)
T ss_pred -EEEeCCcccCCHHHHHHHHHHHH
Confidence 89999999999888888888765
No 241
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.7e-18 Score=144.66 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=104.4
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cC---CccEEEEcCcccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRHG------ 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p---~~G~i~~~g~~v~~~------ 144 (234)
++++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+.. .| .+|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 36889999999988889999999999999999999999999999999999843 25 489999999876321
Q ss_pred ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHh
Q 026740 145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l 195 (234)
....+++.++ ...+++... ..+...+...+. .....++.+.++....++++
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 0111111111 111211110 001111112221 11123445566777888999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..++......+++.+++
T Consensus 164 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14239 164 ATSPKI--ILLDEPTSALDPISAGKIEETLLG 193 (252)
T ss_pred hcCCCE--EEEcCCccccCHHHHHHHHHHHHH
Confidence 999988 899999999988888888887764
No 242
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.9e-18 Score=144.44 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=103.6
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc------c
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG------L 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~------~ 145 (234)
.++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|+++. | .+|+|+++|+++... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 46789999999888899999999999999999999999999999999998752 2 589999999876420 0
Q ss_pred cccCCCChh-------hHHHHHHHHH-------------HHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026740 146 NRDLSFKAE-------DRVENIRRIG-------------EVAKLFADAGV---------ICIACLISPYRKDRDACRSML 196 (234)
Q Consensus 146 ~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll 196 (234)
...+++.++ ...+++.... .+...+...++ .....++.+.++....+++++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14240 83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA 162 (250)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 111111111 1111111100 01111111211 111234556677778899999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..++......+++.+++
T Consensus 163 ~~p~l--lllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14240 163 VEPEV--LLMDEPTSALDPISTLKIEELIQE 191 (250)
T ss_pred cCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 99988 899999999988888888777654
No 243
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.77 E-value=3.3e-19 Score=171.82 Aligned_cols=149 Identities=23% Similarity=0.296 Sum_probs=105.4
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
.++++|++++|++ ..+++|+||++++|+.++|+|+||||||||+++|+|++. |++|+|.+||.++..... ..+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhcc
Confidence 5889999999963 469999999999999999999999999999999999998 999999999988763110 011
Q ss_pred CCChhhH-------HHHHH------------HHHH---HHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAEDR-------VENIR------------RIGE---VAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~~~-------~~~~~------------~~~~---~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+++. ++++. .... ........ +. ..+ ..++.+.+++-..+|+++..+.
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1211110 01110 0000 00111110 11 011 1235566778889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 622 i--liLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 622 I--LLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred E--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9 899999999999888888887764
No 244
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.3e-19 Score=159.56 Aligned_cols=148 Identities=14% Similarity=0.203 Sum_probs=106.7
Q ss_pred cceeeceeeecCCcc-ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 76 VAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~-~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
.++++|+++.|+..+ +|+++||+|++||.++|+|+|||||||++|+|.+++. .+|+|++||+++.... ...++
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhhee
Confidence 489999999999776 9999999999999999999999999999999999886 7899999999986421 11234
Q ss_pred CChhhHH--------------------HHHHHH--HHHHHHHHhc--Cce----E-EEecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAEDRV--------------------ENIRRI--GEVAKLFADA--GVI----C-IACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~~~~--------------------~~~~~~--~~~~~~~~~~--~~~----~-~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.||+-. +..... ..+...+..+ +.. . -..++.+.++....+|++++...+
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 4443321 000000 0011111111 000 0 012345667788899999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||++.|+......+.+.++.
T Consensus 509 --l~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 509 --LLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred --EEecCcccccchhhHHHHHHHHHH
Confidence 899999999998888888887765
No 245
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.2e-18 Score=147.54 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=105.2
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--c--CCccEEEEcCcccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG------ 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~--p~~G~i~~~g~~v~~~------ 144 (234)
++++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ + |++|+|.++|.++...
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 47899999999988889999999999999999999999999999999999875 2 4889999999876320
Q ss_pred ccccCCCChh-------hHHHHHHHHH-------------HHHHHHHhcCc---------eEEEecCcccHHHHHHHHHh
Q 026740 145 LNRDLSFKAE-------DRVENIRRIG-------------EVAKLFADAGV---------ICIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l 195 (234)
....+++.++ ...+++.... .+...+...+. .....++.+.++....++.+
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 0111111111 1112211100 00111111110 11123445566777888999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|+|+..++....+.+++.+++
T Consensus 183 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 212 (271)
T PRK14238 183 AIEPDV--ILMDEPTSALDPISTLKVEELVQE 212 (271)
T ss_pred HcCCCE--EEEeCCCCcCCHHHHHHHHHHHHH
Confidence 999988 899999999998888888877654
No 246
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.8e-18 Score=144.65 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=104.2
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccc-----
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG----- 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~----- 144 (234)
+.++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+++ |. +|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChH
Confidence 36788999999988889999999999999999999999999999999999987 65 69999999876421
Q ss_pred -ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHH
Q 026740 145 -LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRS 194 (234)
Q Consensus 145 -~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 194 (234)
....+++.++ ...+++... ..+.......++ .....++.+.++....+++
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 0111111111 111111110 001111111121 1112234556677788999
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+.+ +++|+|+..|+......+++.+++
T Consensus 162 l~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14249 162 LAIEPEV--ILMDEPCSALDPVSTMRIEELMQE 192 (251)
T ss_pred HhcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999988 899999999988888887777764
No 247
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2e-18 Score=160.68 Aligned_cols=150 Identities=21% Similarity=0.211 Sum_probs=107.7
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|+++|+++.... ...+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-PDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHhCCE
Confidence 46889999999998889999999999999999999999999999999999988 89999999998764210 0111
Q ss_pred CCChhh--------HHHHHHH---------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026740 150 SFKAED--------RVENIRR---------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
++.+++ ..+++.. ...+...+...++. ....++.+.++....++.++..+.+
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV 161 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 111111 0011100 00122223333321 1233455667778889999999998
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+......+++.+++
T Consensus 162 --llLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 162 --IAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred --EEEcCCCCCCCHHHHHHHHHHHHH
Confidence 899999999998888888877764
No 248
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.3e-18 Score=153.66 Aligned_cols=145 Identities=20% Similarity=0.204 Sum_probs=101.3
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--------cccc
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRD 148 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~--------~~~~ 148 (234)
+++ |++++|+++.+ ++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++... ....
T Consensus 2 l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-PQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccchhhCC
Confidence 455 89999987543 8999999999999999999999999999999988 8999999999876421 0111
Q ss_pred CCCChhh--------HHHHHHHH------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026740 149 LSFKAED--------RVENIRRI------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (234)
Q Consensus 149 ~~~~~~~--------~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P 209 (234)
+++..++ ..+++.+. ..+..++...++.. ...++.+.+++...+++++..+.+ +++|||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--lLLDEP 155 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL--LLMDEP 155 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEcCC
Confidence 1121111 11221110 11222233333321 133455667778899999999998 899999
Q ss_pred hhhhhhcchhhHHHHHHc
Q 026740 210 LQVCEARDPKGLYKLARE 227 (234)
Q Consensus 210 ~~~l~~R~~~~l~~~~~~ 227 (234)
+..|+......+++.+++
T Consensus 156 ts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 156 LASLDLPRKRELLPYLER 173 (352)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999988888877776653
No 249
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.4e-18 Score=138.26 Aligned_cols=150 Identities=19% Similarity=0.164 Sum_probs=103.0
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc-----cc----
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-----HG---- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~-----~~---- 144 (234)
.|++++.++++.|+.....+|+||++.+||+++|+|+||||||||++||++.+. |+.|+|.+..++-. ..
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHH
Confidence 368999999999999999999999999999999999999999999999999998 99999988643211 00
Q ss_pred ----ccccCCCChhhHH----------------------HHHHHHHHHHH-HHHhcC----ce--EEEecCcccHHHHHH
Q 026740 145 ----LNRDLSFKAEDRV----------------------ENIRRIGEVAK-LFADAG----VI--CIACLISPYRKDRDA 191 (234)
Q Consensus 145 ----~~~~~~~~~~~~~----------------------~~~~~~~~~~~-~~~~~~----~~--~~~~~~~~~~~~~~~ 191 (234)
..-+|++..+..+ ++++.+...+. .++.-. .. ....|+.+.+++.++
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 0001222111100 11221111111 111100 00 013355667788899
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++.+...+.+ +++|+|+-.++-.....|.+..+
T Consensus 163 ARnLVt~PrL--vfMDEPTGGLDVSVQARLLDllr 195 (258)
T COG4107 163 ARNLVTRPRL--VFMDEPTGGLDVSVQARLLDLLR 195 (258)
T ss_pred HHHhccCCce--EEecCCCCCcchhhHHHHHHHHH
Confidence 9999999999 89999999997766666666554
No 250
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.5e-18 Score=143.25 Aligned_cols=150 Identities=19% Similarity=0.147 Sum_probs=103.2
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----cc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-----LN 146 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~-----~~ 146 (234)
+++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|++++ |.+|+|+++|.++... ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 57889999999988899999999999999999999999999999999998872 2589999999876310 00
Q ss_pred ccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHhCC
Q 026740 147 RDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 147 ~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ll~ 197 (234)
..+++.+++ ..+++... ..+.......++. ....++.+.++....+++++.
T Consensus 83 ~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 83 IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred hheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 111111111 11111110 0011111111111 112344556677788999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||+..++......+++.+++
T Consensus 163 ~p~l--lllDEP~~~LD~~~~~~l~~~l~~ 190 (249)
T PRK14253 163 EPDV--ILMDEPTSALDPIATHKIEELMEE 190 (249)
T ss_pred CCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 9988 899999999988888887777664
No 251
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.8e-18 Score=143.39 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=104.2
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cC---CccEEEEcCcccccc------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRHG------ 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p---~~G~i~~~g~~v~~~------ 144 (234)
++++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ .| .+|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 46889999999998889999999999999999999999999999999999864 13 489999999876420
Q ss_pred ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHh
Q 026740 145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSM 195 (234)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l 195 (234)
....+++.++ ...+++... ..+...+...+. .....++.+.++....++.+
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 0011111111 111111110 001111111111 11123345566777889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..+.+ +++|||+..|+....+.+++.+++
T Consensus 164 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14255 164 AVKPDV--ILLDEPTSALDPISSTQIENMLLE 193 (252)
T ss_pred hcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 999998 899999999998888888877764
No 252
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=3.2e-18 Score=141.34 Aligned_cols=143 Identities=19% Similarity=0.187 Sum_probs=95.0
Q ss_pred ceeeceeeecCCc-----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc----
Q 026740 77 AKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR---- 147 (234)
Q Consensus 77 ~~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~---- 147 (234)
++++|+++.|++. .+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|. +......
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g~-i~~~~q~~~l~ 78 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPGS-IAYVSQEPWIQ 78 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCCeEEEcCE-EEEEecCchhc
Confidence 3578999999764 69999999999999999999999999999999999988 99999999982 2100000
Q ss_pred ------cCCC----ChhhHHHHHHHHHHHHHHHHhc--Cce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 148 ------DLSF----KAEDRVENIRRIGEVAKLFADA--GVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 148 ------~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
.+.+ ......+....+ .....+... +.. ....++.+.++....++.++..+.+ +++|+|+
T Consensus 79 ~~t~~enl~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l--lllDEP~ 155 (204)
T cd03250 79 NGTIRENILFGKPFDEERYEKVIKAC-ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI--YLLDDPL 155 (204)
T ss_pred cCcHHHHhccCCCcCHHHHHHHHHHc-CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcc
Confidence 0001 000000000000 000111100 000 1122445566777889999999998 8999999
Q ss_pred hhhhhcchhhHHHH
Q 026740 211 QVCEARDPKGLYKL 224 (234)
Q Consensus 211 ~~l~~R~~~~l~~~ 224 (234)
..|+....+.+++.
T Consensus 156 ~~LD~~~~~~l~~~ 169 (204)
T cd03250 156 SAVDAHVGRHIFEN 169 (204)
T ss_pred ccCCHHHHHHHHHH
Confidence 99988777777763
No 253
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=9.1e-18 Score=141.35 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=100.6
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~ 154 (234)
++++|+++.|++.. .++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|+++.... ...+++.++
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCeecCcCChhhccEEEEec
Confidence 57899999997644 39999999999999999999999999999999988 89999999998764211 011111111
Q ss_pred --------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026740 155 --------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (234)
Q Consensus 155 --------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P 209 (234)
...+++... ..+...+...++. ....++.+.++....+++++..+.+ +++|||
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEP 156 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI--LLLDEP 156 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCC
Confidence 111111100 0111122222221 1123455666777888999999988 899999
Q ss_pred hhhhhhcchhhHHHHHHc
Q 026740 210 LQVCEARDPKGLYKLARE 227 (234)
Q Consensus 210 ~~~l~~R~~~~l~~~~~~ 227 (234)
+..++....+.+++.+++
T Consensus 157 ~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 157 FSALDPALRQEMLTLVSQ 174 (232)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999988888777776653
No 254
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.1e-18 Score=156.71 Aligned_cols=140 Identities=21% Similarity=0.246 Sum_probs=102.4
Q ss_pred cceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026740 76 VAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~ 153 (234)
.++++|++++|.+. ++++|+||++.+||.++|+|+||||||||+..|+|.+. |++|+|.++|.++.. +++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~-~~~G~i~~~g~~~~~-------l~~ 407 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD-PQQGSITLNGVEIAS-------LDE 407 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC-CCCCeeeECCcChhh-------CCh
Confidence 68999999999765 49999999999999999999999999999999999998 999999999998874 444
Q ss_pred hhHHHHHHHHHHHHHHHH------------------------hcCc-----------e-EE----EecCcccHHHHHHHH
Q 026740 154 EDRVENIRRIGEVAKLFA------------------------DAGV-----------I-CI----ACLISPYRKDRDACR 193 (234)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~------------------------~~~~-----------~-~~----~~~~~~~~~~~~~~~ 193 (234)
++.++.+..+.|-..+|. ..++ . .+ ..++.+.+++...+|
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 408 QALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR 487 (573)
T ss_pred hhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence 333332222222111111 1111 0 00 112345566678899
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
.+++...+ +++|||++.|+.-....+.+.+
T Consensus 488 ~LL~dapl--~lLDEPTegLD~~TE~~vL~ll 517 (573)
T COG4987 488 ALLHDAPL--WLLDEPTEGLDPITERQVLALL 517 (573)
T ss_pred HHHcCCCe--EEecCCcccCChhhHHHHHHHH
Confidence 99998877 8999999999877766655544
No 255
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.76 E-value=7.1e-19 Score=166.21 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=105.8
Q ss_pred ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026740 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~ 148 (234)
..++++|++++|++ ..+++|+||++++|++++|+||||||||||+++|+|+++ |++|+|+++|.++..... ..
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhh
Confidence 35889999999964 469999999999999999999999999999999999998 999999999998764110 01
Q ss_pred CCCChhh-------HHHHHHHH------HHHHHHHHhcCce-----------EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 149 LSFKAED-------RVENIRRI------GEVAKLFADAGVI-----------CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 149 ~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
+++.+++ .++++... .++.......+.. .+ ..++.+.+++-..+|+++..+.
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ 495 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495 (574)
T ss_pred eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1121111 11111100 0111111111110 00 1234556777789999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 496 i--lilDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 496 L--LLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 8 899999999999888888887764
No 256
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.2e-18 Score=144.31 Aligned_cols=151 Identities=18% Similarity=0.180 Sum_probs=103.2
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC------ccccccc--
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG------DNCRHGL-- 145 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g------~~v~~~~-- 145 (234)
.++++++|++++|++..+++|+||++.+||+++|+|+||||||||+++|+|++. |.+|+|.++| +++....
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCcCceeEcCEEEECCcccccCCHH
Confidence 468999999999999999999999999999999999999999999999999988 8886665554 4442100
Q ss_pred --cccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026740 146 --NRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACR 193 (234)
Q Consensus 146 --~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 193 (234)
...+++.++ ...+++... ..+...+..+++. ....++.+.++....++
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 166 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIAR 166 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHH
Confidence 001111111 111111100 0111222223321 11223445667778899
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++..+.+ +++|+|+..|+....+.+++.+++
T Consensus 167 al~~~P~l--lllDEPt~~LD~~~~~~l~~~l~~ 198 (257)
T PRK14246 167 ALALKPKV--LLMDEPTSMIDIVNSQAIEKLITE 198 (257)
T ss_pred HHHcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999998 899999999988888888877763
No 257
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.3e-18 Score=149.16 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=105.2
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCccccccc-----
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHGL----- 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~~----- 145 (234)
++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++++ |.+|+|+++|.++....
T Consensus 44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred ceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 468899999999988999999999999999999999999999999999998752 57999999998764210
Q ss_pred -cccCCCChhh-------HHHHHHHH-------------------------HHHHHHHHhcCc---------eEEEecCc
Q 026740 146 -NRDLSFKAED-------RVENIRRI-------------------------GEVAKLFADAGV---------ICIACLIS 183 (234)
Q Consensus 146 -~~~~~~~~~~-------~~~~~~~~-------------------------~~~~~~~~~~~~---------~~~~~~~~ 183 (234)
...+++.+++ ..+++... ..+...+...++ .....++.
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 203 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG 203 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence 0112222211 11111100 001111111111 01123445
Q ss_pred ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.++....+++++..+.+ +++|+|+..|+......+++.+++
T Consensus 204 Gq~qrv~LAraL~~~p~l--LLLDEPtsgLD~~~~~~l~~~L~~ 245 (305)
T PRK14264 204 GQQQRLCIARCLAVDPEV--ILMDEPASALDPIATSKIEDLIEE 245 (305)
T ss_pred HHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 566777888999999988 899999999988888888877764
No 258
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.76 E-value=4.4e-19 Score=167.94 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=103.1
Q ss_pred cceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026740 76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~ 150 (234)
-++++|+++.| ++.++++|+||++++|+.++|+|+||||||||+++|+|++ |.+|+|.++|.++..... ..++
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhheE
Confidence 48899999655 5678999999999999999999999999999999999988 578999999988753110 0011
Q ss_pred C-----------------------ChhhHHHHHHHHHHHHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCCC
Q 026740 151 F-----------------------KAEDRVENIRRIGEVAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 151 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
+ +.++..+..+.. ......... +. ..+ ..++.+.+++-..+|+++..+.
T Consensus 427 ~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a-~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~ 505 (588)
T PRK11174 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENA-WVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ 505 (588)
T ss_pred EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHh-CHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1 111111111110 111111111 11 111 2245567788899999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 506 I--liLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 506 L--LLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred E--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 9 899999999999888888877764
No 259
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.4e-18 Score=139.42 Aligned_cols=142 Identities=17% Similarity=0.196 Sum_probs=98.6
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc---c-----
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---R----- 147 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~---~----- 147 (234)
.++.+|++...++.+++.++||++.+||++.|.||||||||||+|+|+|+++ |++|+|+++|..+..... .
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-CCCCeEEecCCCCccchhhHHHHHHHh
Confidence 3566788999999999999999999999999999999999999999999999 999999999887754221 0
Q ss_pred --cCCCChh-hHHHHHHHHHHH---------HHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 148 --DLSFKAE-DRVENIRRIGEV---------AKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 148 --~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
..++..+ ...+++++...+ .......++. ++..++.+.+++...++-++....+ +++|||+
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL--WiLDEP~ 158 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL--WILDEPF 158 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc--eeecCcc
Confidence 0112111 112333322111 1111222221 2223345566667788888888888 8999999
Q ss_pred hhhhhcchhh
Q 026740 211 QVCEARDPKG 220 (234)
Q Consensus 211 ~~l~~R~~~~ 220 (234)
..+++.....
T Consensus 159 taLDk~g~a~ 168 (209)
T COG4133 159 TALDKEGVAL 168 (209)
T ss_pred cccCHHHHHH
Confidence 9997665443
No 260
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.76 E-value=7.2e-19 Score=165.88 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=106.9
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc--
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD-- 148 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~-- 148 (234)
-++++|+++.|+ +.++++|+||++++||.++|+||||||||||++.|+|++. |.+|+|++||.|++.... ..
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCEehhhcCHHHHHHhcc
Confidence 488999999998 6899999999999999999999999999999999999998 899999999998864210 00
Q ss_pred ------------------CC---CChhhHHHHHHHHHHHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 149 ------------------LS---FKAEDRVENIRRIGEVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 149 ------------------~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++ .+.++..+..+.. +........ +.. .+ ..++.+.+++-..+|+++..+.
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a-~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLA-NAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHh-ChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 11 1111221111111 111111111 111 11 2245567788899999999998
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+ +++|||++.++....+.+.+.+.
T Consensus 486 I--LILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 486 I--LILDEATSALDTETEALIQDALK 509 (567)
T ss_pred E--EEEeccccccCHHhHHHHHHHHH
Confidence 8 89999999999888888877775
No 261
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=1.3e-18 Score=164.90 Aligned_cols=148 Identities=16% Similarity=0.223 Sum_probs=105.8
Q ss_pred cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026740 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~ 150 (234)
.++++|+++.|++ ..+++|+||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|.++..... ..++
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-PQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEhhhCCHHHHHhheE
Confidence 5889999999965 569999999999999999999999999999999999998 999999999988753110 0011
Q ss_pred CCh-----------------------hhHHHHHHHHHHHHHHHHhc--CceE-E----EecCcccHHHHHHHHHhCCCCC
Q 026740 151 FKA-----------------------EDRVENIRRIGEVAKLFADA--GVIC-I----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 151 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
+.+ ++........ ......... +.-. + ..++.+.+++-..+|+++....
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~-~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERA-QAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHh-CHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 111 1111111110 111111111 1111 1 1245566778889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 492 i--liLDEpts~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 492 I--LILDEATSALDVETEAKVKAALDE 516 (588)
T ss_pred E--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 9 899999999999888988887764
No 262
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.1e-17 Score=141.29 Aligned_cols=147 Identities=19% Similarity=0.229 Sum_probs=103.4
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~ 154 (234)
++++|+++.|++. +++++||++.+||+++|+|+||||||||+++|+|+++ |++|+|+++|.++.... ...+++.++
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcCcCChhHcCEEEEee
Confidence 3578899999764 8999999999999999999999999999999999988 99999999998764311 001111111
Q ss_pred --------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026740 155 --------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (234)
Q Consensus 155 --------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P 209 (234)
...+++... ..+...+...++. ....++.+.++....+++++..+.+ +++|+|
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP 156 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI--LLLDEP 156 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE--EEECCC
Confidence 111111110 0111222222221 1123455667777889999999988 899999
Q ss_pred hhhhhhcchhhHHHHHHc
Q 026740 210 LQVCEARDPKGLYKLARE 227 (234)
Q Consensus 210 ~~~l~~R~~~~l~~~~~~ 227 (234)
+..++....+.+++.+++
T Consensus 157 t~gLD~~~~~~l~~~l~~ 174 (235)
T cd03299 157 FSALDVRTKEKLREELKK 174 (235)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999988888888887764
No 263
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.5e-18 Score=144.42 Aligned_cols=141 Identities=18% Similarity=0.162 Sum_probs=98.6
Q ss_pred ceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--------ccccCCCC
Q 026740 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFK 152 (234)
Q Consensus 81 ~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~--------~~~~~~~~ 152 (234)
+++++|++..+ |+||++++ ++++|+||||||||||+++|+|+++ |++|+|.++|.++... ....+++.
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 89999998765 99999999 9999999999999999999999998 8999999999875310 00011111
Q ss_pred hh--------hHHHHHHH----------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026740 153 AE--------DRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (234)
Q Consensus 153 ~~--------~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P 209 (234)
++ ...+++.. ...+...+...++. ....++.+.++....++.++..+.+ +++|||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP 158 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL--LLLDEP 158 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence 11 11111110 00122223333321 1233455667777889999999998 899999
Q ss_pred hhhhhhcchhhHHHHHHc
Q 026740 210 LQVCEARDPKGLYKLARE 227 (234)
Q Consensus 210 ~~~l~~R~~~~l~~~~~~ 227 (234)
+..++....+.+++.+++
T Consensus 159 t~~LD~~~~~~l~~~l~~ 176 (214)
T cd03297 159 FSALDRALRLQLLPELKQ 176 (214)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999998888888877754
No 264
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1e-17 Score=142.65 Aligned_cols=149 Identities=19% Similarity=0.124 Sum_probs=102.6
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------cc
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------LN 146 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------~~ 146 (234)
.+++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++.. |.+|+|.++|+++... ..
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 3578999999888899999999999999999999999999999999998741 3689999999876321 01
Q ss_pred ccCCCChh-------hHHHHHHHH--------------HHHHHHHHhcCceE---------EEecCcccHHHHHHHHHhC
Q 026740 147 RDLSFKAE-------DRVENIRRI--------------GEVAKLFADAGVIC---------IACLISPYRKDRDACRSML 196 (234)
Q Consensus 147 ~~~~~~~~-------~~~~~~~~~--------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ll 196 (234)
..+++.++ ...+++... ..+...+...++.. ...++.+.++....+++++
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 11111111 111111110 01112223333211 1223445566778889999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|+|+..|+....+.+++.+++
T Consensus 166 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 194 (251)
T PRK14244 166 VKPTM--LLMDEPCSALDPVATNVIENLIQE 194 (251)
T ss_pred cCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 99988 899999999988888888877764
No 265
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.75 E-value=1.6e-18 Score=167.53 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=101.9
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~ 148 (234)
.++++|+++.|++ ..+++|+||++++||.++|+||||||||||+++|+|+++ |++|+|.+||.++..... ..
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ-PTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHhh
Confidence 5889999999964 469999999999999999999999999999999999998 999999999988753110 01
Q ss_pred CCCChhh-------HHHHHH------------HHHHH---HHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCC
Q 026740 149 LSFKAED-------RVENIR------------RIGEV---AKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 149 ~~~~~~~-------~~~~~~------------~~~~~---~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~ 199 (234)
+++.+++ .++++. ...+. ....... +.. .+ ..++.+.+++-..+|+++...
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 1111111 011111 00000 0111111 110 11 123456677888999999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHH
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYK 223 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~ 223 (234)
.+ +++|||++.++....+.+++
T Consensus 637 ~I--LILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 637 RV--LILDEATSALDAECEQLLQE 658 (711)
T ss_pred CE--EEEEccccccCHHHHHHHHH
Confidence 99 89999999998887777776
No 266
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=4.6e-18 Score=162.43 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=103.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc----cccc-c---c
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC----RHGL-N---R 147 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v----~~~~-~---~ 147 (234)
+++++|++++|+++.+++|+||+|.+|++++|+||||||||||+|+|+|++. |++|+|.++|... .... . .
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-pd~G~I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-ADGGSYTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEEEecCCCCCCCC
Confidence 3678999999999999999999999999999999999999999999999888 9999999987531 1100 0 0
Q ss_pred cCCCChhhHHH------------------HHHH-------------HHHHHHHHHhcCce------EEEecCcccHHHHH
Q 026740 148 DLSFKAEDRVE------------------NIRR-------------IGEVAKLFADAGVI------CIACLISPYRKDRD 190 (234)
Q Consensus 148 ~~~~~~~~~~~------------------~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 190 (234)
.+++..+.... .+.. -..+..++...++. .+..++.+.+++..
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 00111100000 0000 00111223333321 12334566777888
Q ss_pred HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++.++..+.+ +++|||++.|+......+.+.+++
T Consensus 160 LA~aL~~~P~l--LLLDEPtn~LD~~~~~~L~~~L~~ 194 (638)
T PRK10636 160 LAQALICRSDL--LLLDEPTNHLDLDAVIWLEKWLKS 194 (638)
T ss_pred HHHHHccCCCE--EEEcCCCCcCCHHHHHHHHHHHHh
Confidence 99999999999 899999999988888888777764
No 267
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.3e-18 Score=150.19 Aligned_cols=68 Identities=28% Similarity=0.254 Sum_probs=59.4
Q ss_pred cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC----CccEEEEcCccccc
Q 026740 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRH 143 (234)
Q Consensus 76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p----~~G~i~~~g~~v~~ 143 (234)
+++++|++..|.. +.+++||||++.+||+++|+|+|||||||++++|+|+++.+ .+|+|.|+|+++..
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~ 76 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccccc
Confidence 3678999988843 57999999999999999999999999999999999999722 46899999998753
No 268
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.75 E-value=2.9e-18 Score=161.44 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=104.1
Q ss_pred cceeeceeeecCCc-----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----
Q 026740 76 VAKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---- 146 (234)
Q Consensus 76 ~~~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~---- 146 (234)
.++++|++++|++. .+++|+||++++|++++|+||||||||||+++|+|++. |++|+|.++|.++.....
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-PQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHH
Confidence 57899999999752 58999999999999999999999999999999999998 999999999998864210
Q ss_pred ccCCCChhhHH-------HHHH---HHHHHHHHHHhcCceE-----------EEecCcccHHHHHHHHHhCCCCCceEEE
Q 026740 147 RDLSFKAEDRV-------ENIR---RIGEVAKLFADAGVIC-----------IACLISPYRKDRDACRSMLPEGDFIEVF 205 (234)
Q Consensus 147 ~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ll~~~~l~~~~ 205 (234)
..+++.+++.. ++.. .-..+.......+... ...++.+.+++...+++++..+.+ ++
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i--li 493 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI--LL 493 (555)
T ss_pred hhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE--EE
Confidence 11112111110 0000 0001111122222111 123455667777899999999999 89
Q ss_pred EeCChhhhhhcchhhHHHHH
Q 026740 206 MDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 206 ld~P~~~l~~R~~~~l~~~~ 225 (234)
+|||++.++....+.+++.+
T Consensus 494 lDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 494 FDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred EeCCccCCCHHHHHHHHHHH
Confidence 99999999999888887654
No 269
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=5.6e-18 Score=144.12 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=103.7
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--c--CCccEEEEcCcccccc------c
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG------L 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~--p~~G~i~~~g~~v~~~------~ 145 (234)
+++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|++. + |++|+|+++|.++... .
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4678999999988889999999999999999999999999999999999864 1 3789999999886421 0
Q ss_pred cccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026740 146 NRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSML 196 (234)
Q Consensus 146 ~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll 196 (234)
...+++.+++ ..+++... ..+.......++ .....++.+.++....+++++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 1111111111 11111100 001111122221 111233455666778889999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|+|+..++......+++.+++
T Consensus 163 ~~p~l--lllDEP~~gLD~~~~~~l~~~l~~ 191 (250)
T PRK14266 163 VSPEV--ILMDEPCSALDPISTTKIEDLIHK 191 (250)
T ss_pred cCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence 99988 899999999998888888887764
No 270
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.75 E-value=2.4e-18 Score=148.60 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=101.7
Q ss_pred ceeeceeeec--CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 77 AKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 77 ~~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
++++|+++.| +...+++|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|+++|.++.... ...++
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 5789999999 45679999999999999999999999999999999999885 5799999998874311 01111
Q ss_pred CChhhH-------HHHHHHH-----HHHHHHHHhcCce------------EE----EecCcccHHHHHHHHHhCCCCCce
Q 026740 151 FKAEDR-------VENIRRI-----GEVAKLFADAGVI------------CI----ACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 151 ~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~------------~~----~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
+.+++. .+++... ..+.......++. .+ ..++.+.++....+++++..+.+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i- 159 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI- 159 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE-
Confidence 211111 1111100 0001111111110 00 11445567777889999999998
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|+|+..++....+.+++.+++
T Consensus 160 -lllDEpts~LD~~~~~~l~~~l~~ 183 (275)
T cd03289 160 -LLLDEPSAHLDPITYQVIRKTLKQ 183 (275)
T ss_pred -EEEECccccCCHHHHHHHHHHHHH
Confidence 899999999998888888888875
No 271
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.75 E-value=2.8e-18 Score=161.83 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=105.5
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
-++++|++++|++ ..+++|+||++++|+.++|+|+||||||||+++|+|++. |.+|+|+++|.++..... ..+
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-PDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEeHHhcCHHHHHhhc
Confidence 4889999999964 568999999999999999999999999999999999998 999999999988653110 001
Q ss_pred CCChh------------------------hHHHHHHHHHHHHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCC
Q 026740 150 SFKAE------------------------DRVENIRRIGEVAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 150 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~ 198 (234)
++.++ +..+..... .+....... ++ ..+ ..++.+.+++-..+|.++..
T Consensus 409 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~-~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAA-YAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred eEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHc-ChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 11111 111111110 011111111 11 011 12455677788899999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+ +++|||++.++....+.+++.+++
T Consensus 488 ~~i--llLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 488 API--LILDEATSALDNESERLVQAALER 514 (571)
T ss_pred CCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence 988 899999999999999999888775
No 272
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=9.4e-18 Score=158.06 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=103.8
Q ss_pred ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc-cccccccccC---
Q 026740 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRDL--- 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~-~v~~~~~~~~--- 149 (234)
++++++|+++.|+ ++.+++|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. .+. ....+.
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~~~~i~-~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFEGEARPAPGIKVG-YLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEE-EEecCCCCC
Confidence 4789999999998 7889999999999999999999999999999999999998 89999998743 121 000000
Q ss_pred -CCChhhHHHH-HHH-------H-------------------------------------HHHHHHHHhcCc----eEEE
Q 026740 150 -SFKAEDRVEN-IRR-------I-------------------------------------GEVAKLFADAGV----ICIA 179 (234)
Q Consensus 150 -~~~~~~~~~~-~~~-------~-------------------------------------~~~~~~~~~~~~----~~~~ 179 (234)
.++..+.... ... . ..+...+...++ ..+.
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 162 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT 162 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchh
Confidence 1111111000 000 0 001111111222 1123
Q ss_pred ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 180 ~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++.+.++....++.++..+.+ +++|||++.|+......+++.+++
T Consensus 163 ~LSgGqkqrv~la~al~~~p~v--lLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDM--LLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCE--EEEcCCCCcCChHHHHHHHHHHHh
Confidence 3456667778899999999998 899999999998888888888775
No 273
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.75 E-value=5.6e-18 Score=157.59 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=106.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC--CccEEEEcCccccccc-----ccc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRHGL-----NRD 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p--~~G~i~~~g~~v~~~~-----~~~ 148 (234)
+++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ | ++|+|.++|+++.... ...
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 3678999999998889999999999999999999999999999999999887 5 6999999998764210 011
Q ss_pred CCCChhhH--------HHHHHH----------------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCC
Q 026740 149 LSFKAEDR--------VENIRR----------------IGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 149 ~~~~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~ 198 (234)
+++.+++. .+++.. ...+..++..+++. ....++.+.++....+++++..
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 11211110 011100 00122223333321 1233556677778899999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+ +++|||+..|+....+.+++.+++
T Consensus 160 p~l--llLDEPt~~LD~~~~~~l~~~l~~ 186 (500)
T TIGR02633 160 ARL--LILDEPSSSLTEKETEILLDIIRD 186 (500)
T ss_pred CCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 988 899999999988888888877654
No 274
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.4e-18 Score=165.56 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=106.9
Q ss_pred ccceeeceeeecC-----------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026740 75 TVAKSTNILWHKN-----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (234)
Q Consensus 75 ~~~~~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~ 143 (234)
++++++|+++.|+ ...+++++||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCc
Confidence 5799999999996 1468999999999999999999999999999999999998 899999999987642
Q ss_pred cc-------cccCCCChhh----------HHHHHHH-------------HHHHHHHHHhcCce------EEEecCcccHH
Q 026740 144 GL-------NRDLSFKAED----------RVENIRR-------------IGEVAKLFADAGVI------CIACLISPYRK 187 (234)
Q Consensus 144 ~~-------~~~~~~~~~~----------~~~~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~ 187 (234)
.. ...+++..++ ..+++.. ...+..++...++. ....++.+.++
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 10 1112221111 1111100 00122233333331 11334566777
Q ss_pred HHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 188 ~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
...++++++..+.+ +++|||+..|+......+++.++
T Consensus 471 Rv~iAraL~~~p~l--lllDEPts~LD~~~~~~i~~ll~ 507 (623)
T PRK10261 471 RICIARALALNPKV--IIADEAVSALDVSIRGQIINLLL 507 (623)
T ss_pred HHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 88899999999998 89999999998888888887774
No 275
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.75 E-value=4.6e-18 Score=151.88 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=100.0
Q ss_pred ceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--------cccCCCC
Q 026740 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRDLSFK 152 (234)
Q Consensus 81 ~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~~~~~ 152 (234)
|+++.|++..+ ++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+++.
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEE
Confidence 78899987664 9999999999999999999999999999999998 89999999998864210 1111111
Q ss_pred hh--------hHHHHHHHH----------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026740 153 AE--------DRVENIRRI----------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209 (234)
Q Consensus 153 ~~--------~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P 209 (234)
++ ...+++... ..+..++...++.. ...++.+.++....+++++..+.+ +++|||
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l--llLDEP 158 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL--LLMDEP 158 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCC
Confidence 11 111211110 01222233333321 123455667778899999999998 899999
Q ss_pred hhhhhhcchhhHHHHHHc
Q 026740 210 LQVCEARDPKGLYKLARE 227 (234)
Q Consensus 210 ~~~l~~R~~~~l~~~~~~ 227 (234)
+..|+......+++.+++
T Consensus 159 ts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 159 LAALDDPRKYEILPYLER 176 (354)
T ss_pred CcCCCHHHHHHHHHHHHH
Confidence 999988888888877764
No 276
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=156.80 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=103.6
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-cccccccc----CCC
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD----LSF 151 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-v~~~~~~~----~~~ 151 (234)
++++|+++.|++.++++++||++.+|++++|+||||||||||+|+|+|+++ |++|+|.++|.. +. ..... ..+
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~-~~~q~~~~~~~~ 79 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-PSAGNVSLDPNERLG-KLRQDQFAFEEF 79 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEE-EEeccCCcCCCC
Confidence 678999999998899999999999999999999999999999999999998 899999998742 21 00000 001
Q ss_pred ChhhHHHH----HH-------------------------------------HHHHHHHHHHhcCce------EEEecCcc
Q 026740 152 KAEDRVEN----IR-------------------------------------RIGEVAKLFADAGVI------CIACLISP 184 (234)
Q Consensus 152 ~~~~~~~~----~~-------------------------------------~~~~~~~~~~~~~~~------~~~~~~~~ 184 (234)
+..+.... .. .-..+...+...++. ....++.+
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 159 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG 159 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence 11110000 00 000111222223321 12334566
Q ss_pred cHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 185 YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 185 ~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++....++.++..+.+ +++|||++.|+......+.+.+.+
T Consensus 160 q~qrv~lA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 160 WKLRVLLAQALFSNPDI--LLLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred HHHHHHHHHHHhcCCCE--EEEcCCCcccCHHHHHHHHHHHHh
Confidence 67778889999999988 899999999998888888888864
No 277
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.75 E-value=6.5e-18 Score=158.24 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=105.9
Q ss_pred ccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----CccEEEEcCccccccc
Q 026740 75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRHGL 145 (234)
Q Consensus 75 ~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-----~~G~i~~~g~~v~~~~ 145 (234)
++++++|+++.|++ +.+++++||++++||+++|+||||||||||+|+|+|+++ | ++|+|.++|+++....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~-~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP-SPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCcCCccceEEEECCEecccCC
Confidence 46899999999963 579999999999999999999999999999999999987 4 6899999998864210
Q ss_pred --------cccCCCChhhH----------HHHHHH-------------HHHHHHHHHhcCce--------EEEecCcccH
Q 026740 146 --------NRDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI--------CIACLISPYR 186 (234)
Q Consensus 146 --------~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~--------~~~~~~~~~~ 186 (234)
...+++.+++. .+.+.. ...+...+...++. ....++.+.+
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 01122222211 000000 00111222222321 1233455667
Q ss_pred HHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 187 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 187 ~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++...+++++..+.+ +++|||++.|+......+++.+++
T Consensus 163 qrv~iAraL~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 163 QRVMIAMALLTRPEL--LIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred HHHHHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHH
Confidence 777899999999998 899999999988888888777654
No 278
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.75 E-value=2.9e-18 Score=161.20 Aligned_cols=148 Identities=18% Similarity=0.138 Sum_probs=104.5
Q ss_pred cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
.++++|++++|++ ..+++|+||++++|+.++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...++
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCCCCHHHHhhheE
Confidence 5889999999964 569999999999999999999999999999999999998 99999999999876311 11122
Q ss_pred CChhhHHHH---HH-----H-HHHHHHHHHhcCceE---E-------EecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026740 151 FKAEDRVEN---IR-----R-IGEVAKLFADAGVIC---I-------ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211 (234)
Q Consensus 151 ~~~~~~~~~---~~-----~-~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~ 211 (234)
+.+++..-. ++ . -..+.......+... . ..++.+.+++-..+++++..+.+ +++|||++
T Consensus 401 ~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i--lilDE~ts 478 (547)
T PRK10522 401 AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI--LLLDEWAA 478 (547)
T ss_pred EEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCCC
Confidence 222221100 00 0 001111111111110 0 13445667777899999999999 89999999
Q ss_pred hhhhcchhhHHHHHH
Q 026740 212 VCEARDPKGLYKLAR 226 (234)
Q Consensus 212 ~l~~R~~~~l~~~~~ 226 (234)
.++....+.+++.+.
T Consensus 479 ~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 479 DQDPHFRREFYQVLL 493 (547)
T ss_pred CCCHHHHHHHHHHHH
Confidence 998888887777664
No 279
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.75 E-value=3.2e-18 Score=161.63 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=104.2
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~ 148 (234)
.++++|+++.|++ ..+++|+||++++||.++|+|+||||||||+++|+|+++ |.+|+|+++|.++..... ..
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-PQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHHh
Confidence 5889999999964 469999999999999999999999999999999999998 999999999987653110 01
Q ss_pred CCCChhh-----------------------HHHHHHHHHHHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCC
Q 026740 149 LSFKAED-----------------------RVENIRRIGEVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 149 ~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~ 198 (234)
+++.+++ ........ ......... +.. .+ ..++.+.+++-..+|+++..
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~-~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAA-HAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHc-CcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 1111111 11111110 011111111 111 11 12345667778899999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++ +++|||++.++....+.+++.+++
T Consensus 495 ~~i--lilDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 495 API--LLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred CCe--EEEeCcccccCHHHHHHHHHHHHH
Confidence 998 899999999988888888777664
No 280
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.74 E-value=5.1e-18 Score=157.61 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=102.7
Q ss_pred eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCCChh
Q 026740 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAE 154 (234)
Q Consensus 80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~~~~ 154 (234)
+|+++.|++.++++|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...+++.++
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-KDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 688999988889999999999999999999999999999999999988 89999999998764210 011111111
Q ss_pred h--------HHHHHH---------------HHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 155 D--------RVENIR---------------RIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 155 ~--------~~~~~~---------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
+ ..+++. ....+...+...++. ....++.+.++....+++++..+.+ +++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l--llL 158 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI--VIM 158 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCE--EEE
Confidence 1 001100 000122223323321 1233455667778889999999988 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||+..|+......+++.+++
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRK 179 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHH
Confidence 999999988888888777654
No 281
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.74 E-value=2.6e-18 Score=165.67 Aligned_cols=149 Identities=20% Similarity=0.204 Sum_probs=105.1
Q ss_pred cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
.++++|++++|+ +..+++++||++++|+.++|+|+||||||||+++|+|++. |++|+|++||.++..... ..+
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~-p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-PQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEehhhCCHHHHHHhC
Confidence 588999999995 3569999999999999999999999999999999999998 999999999998763110 011
Q ss_pred CCChhh-------HHHHHH------------HHH---HHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAED-------RVENIR------------RIG---EVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~~-------~~~~~~------------~~~---~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+++ .++++. ... ......... +.- .+ ..++.+.+++...+|+++..+.
T Consensus 534 ~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ 613 (694)
T TIGR01846 534 GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR 613 (694)
T ss_pred eEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 111111 011110 000 001111111 111 11 1234566777889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 614 i--lilDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 614 I--LIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred E--EEEECCCcCCCHHHHHHHHHHHHH
Confidence 9 899999999999998888887765
No 282
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.74 E-value=3.5e-18 Score=161.85 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=104.3
Q ss_pred cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026740 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~ 150 (234)
.++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...++
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD-PTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC-CCCCEEEECCEEhhhCCHHHHHhheE
Confidence 5889999999975 578999999999999999999999999999999999998 99999999998765311 00011
Q ss_pred CChhh-------HHHHHH-------------HHHH--HHHHHHh-c-CceE-E----EecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAED-------RVENIR-------------RIGE--VAKLFAD-A-GVIC-I----ACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~~-------~~~~~~-------------~~~~--~~~~~~~-~-~~~~-~----~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.+++ .++++. .... ....... + +... + ..++.+.+++-..+++++..+.+
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 111111 0000 0011111 1 1100 1 12345667777899999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||++.++....+.+++.+++
T Consensus 493 --lilDEpts~LD~~~~~~i~~~l~~ 516 (585)
T TIGR01192 493 --LVLDEATSALDVETEARVKNAIDA 516 (585)
T ss_pred --EEEECCccCCCHHHHHHHHHHHHH
Confidence 899999999999888888877764
No 283
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.74 E-value=1.7e-18 Score=162.57 Aligned_cols=149 Identities=21% Similarity=0.197 Sum_probs=104.6
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++|++++|++ ..+++|+||++++|+.++|+||||||||||+++|+|+++ |.+|+|.++|.++.... ...+
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP-PTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEehhhCCHHHHhhhe
Confidence 5889999999953 579999999999999999999999999999999999998 99999999998865311 0001
Q ss_pred CCChhh-------HHHHHH-------------HHH--HHHHHHHhc--CceE-----EEecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAED-------RVENIR-------------RIG--EVAKLFADA--GVIC-----IACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~~-------~~~~~~-------------~~~--~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+++ .++++. ... ......... +... ...++.+.+++...+++++..+.
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 111111 111111 000 011111111 1111 12235566778889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 475 i--lilDEpts~LD~~~~~~i~~~l~~ 499 (544)
T TIGR01842 475 L--VVLDEPNSNLDEEGEQALANAIKA 499 (544)
T ss_pred E--EEEeCCccccCHHHHHHHHHHHHH
Confidence 8 899999999998888888877764
No 284
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.74 E-value=1.8e-18 Score=163.33 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=103.7
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
.++++|+++.|+. ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|+++..... ..+
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD-VSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEHhhCCHHHHHhhe
Confidence 4788999999964 569999999999999999999999999999999999998 999999999988743110 001
Q ss_pred CCChhh-------HHHHH------------HHHHHHH---HHHHh-c-Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAED-------RVENI------------RRIGEVA---KLFAD-A-GVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~~-------~~~~~------------~~~~~~~---~~~~~-~-~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+++ .++++ ....... ..... + +.. .+ ..++.+.+++...+++++..+.
T Consensus 392 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 392 AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 111110 01111 0000000 00110 0 111 11 1234566777789999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 472 i--lllDEpts~LD~~~~~~i~~~l~~ 496 (569)
T PRK10789 472 I--LILDDALSAVDGRTEHQILHNLRQ 496 (569)
T ss_pred E--EEEECccccCCHHHHHHHHHHHHH
Confidence 9 899999999999888888887764
No 285
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-17 Score=154.75 Aligned_cols=150 Identities=16% Similarity=0.094 Sum_probs=106.7
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc----C-
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----L- 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~----~- 149 (234)
++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|++. |++|+|.++|+.-....... +
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~~~~q~~~~~~~ 396 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-PDSGTVKWSENANIGYYAQDHAYDFE 396 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCceEEEEEcccccccCC
Confidence 37899999999998889999999999999999999999999999999999988 89999999874311111110 0
Q ss_pred -CCChhhHHHHHH----HHHHHHHHHHhcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 150 -SFKAEDRVENIR----RIGEVAKLFADAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 150 -~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
.++..+...... .-..+...+...++ .....++.+.++....++.++..+.+ +++|||+..|+....
T Consensus 397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l--llLDEPt~~LD~~~~ 474 (530)
T PRK15064 397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV--LVMDEPTNHMDMESI 474 (530)
T ss_pred CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHH
Confidence 011111100000 00011222222322 12344556677778889999999998 899999999998888
Q ss_pred hhHHHHHHc
Q 026740 219 KGLYKLARE 227 (234)
Q Consensus 219 ~~l~~~~~~ 227 (234)
..+++.+++
T Consensus 475 ~~l~~~l~~ 483 (530)
T PRK15064 475 ESLNMALEK 483 (530)
T ss_pred HHHHHHHHH
Confidence 888888775
No 286
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=3.5e-17 Score=136.46 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=97.1
Q ss_pred eeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--------ccc
Q 026740 78 KSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRD 148 (234)
Q Consensus 78 ~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~ 148 (234)
.+.|+.+.|+ ...+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ...
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcce
Confidence 4678899996 5679999999999999999999999999999999999988 89999999998653210 011
Q ss_pred CCCChhh-------HHHHHHHH-----HHHHHHHHhcCc----------------eEEEecCcccHHHHHHHHHhCCCCC
Q 026740 149 LSFKAED-------RVENIRRI-----GEVAKLFADAGV----------------ICIACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 149 ~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
+++.+++ ..+++... ..........++ .....++.+.++....++.++..+.
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 1111111 11111100 000111111110 0122345566677788999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHH
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYK 223 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~ 223 (234)
+ +++|||+..++......+++
T Consensus 161 i--lllDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 161 I--VFLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred E--EEEeCCccccCHHHHHHHHH
Confidence 8 89999999998877776665
No 287
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=146.82 Aligned_cols=150 Identities=19% Similarity=0.140 Sum_probs=104.4
Q ss_pred ccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc----
Q 026740 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG---- 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~---- 144 (234)
.+++++|+++.|. ...+++++||+|++||+++|+|+||||||||+++|+|++.. |.+|+|.++|+++...
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4789999999994 45799999999999999999999999999999999998852 4689999999987521
Q ss_pred --ccccCCCChhh-------HHHHHHHHH-------------HHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026740 145 --LNRDLSFKAED-------RVENIRRIG-------------EVAKLFADAGVI---------CIACLISPYRKDRDACR 193 (234)
Q Consensus 145 --~~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 193 (234)
....+++.+++ ..+++.+.. .+...+...++. ....++.+.++....++
T Consensus 159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence 11112222111 112221100 011112222211 11234556677778999
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++..+.+ +++|+|+..++....+.+.+.++
T Consensus 239 Al~~~p~I--lLLDEPts~LD~~~~~~i~~~i~ 269 (329)
T PRK14257 239 AIALEPEV--LLMDEPTSALDPIATAKIEELIL 269 (329)
T ss_pred HHHhCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999998 89999999998877777776665
No 288
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.5e-17 Score=155.15 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=104.9
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|+++.|+ .+++|+||++++|++++|+||||||||||+|+|+|+++ |++|+|+++|+++.... ...+
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCc
Confidence 4789999998764 48999999999999999999999999999999999988 89999999998763210 0112
Q ss_pred CCChhh-----------HHHHHHH---------------------HHHHHHHHHhcCce------EEEecCcccHHHHHH
Q 026740 150 SFKAED-----------RVENIRR---------------------IGEVAKLFADAGVI------CIACLISPYRKDRDA 191 (234)
Q Consensus 150 ~~~~~~-----------~~~~~~~---------------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 191 (234)
++.+++ ..+++.. ...+...+..+++. ....++.+.++....
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 222211 1111000 00112223333331 123345667778889
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++.++..+.+ +++|||+..|+......+++.+++
T Consensus 421 Aral~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~ 454 (510)
T PRK09700 421 SKWLCCCPEV--IIFDEPTRGIDVGAKAEIYKVMRQ 454 (510)
T ss_pred HHHHhcCCCE--EEECCCCCCcCHHHHHHHHHHHHH
Confidence 9999999988 899999999998888888887753
No 289
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.73 E-value=1.8e-17 Score=154.24 Aligned_cols=150 Identities=17% Similarity=0.240 Sum_probs=104.4
Q ss_pred ccceeeceeeec---CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----c
Q 026740 75 TVAKSTNILWHK---NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----N 146 (234)
Q Consensus 75 ~~~~~~~l~~~~---~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~ 146 (234)
++++++|+++.| ++..+++++||++.+||+++|+||||||||||+|+|+|++++|.+|+|.++|+++.... .
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 378999999998 34679999999999999999999999999999999999987237999999998764210 0
Q ss_pred ccCCCChhhH-----------HHHHH-----------------HHHHHHHHHHhcCce------EEEecCcccHHHHHHH
Q 026740 147 RDLSFKAEDR-----------VENIR-----------------RIGEVAKLFADAGVI------CIACLISPYRKDRDAC 192 (234)
Q Consensus 147 ~~~~~~~~~~-----------~~~~~-----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 192 (234)
..+++.+++. .+.+. .-..+...+..+++. ....++.+.++....+
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 1122211110 00000 000122233333331 1234456677778889
Q ss_pred HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+.++..+.+ +++|||+..|+......+++.++
T Consensus 416 ~al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~ 447 (500)
T TIGR02633 416 KMLLTNPRV--LILDEPTRGVDVGAKYEIYKLIN 447 (500)
T ss_pred HHHhhCCCE--EEEcCCCCCcCHhHHHHHHHHHH
Confidence 999999988 89999999998888887775554
No 290
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=1.3e-17 Score=129.72 Aligned_cols=139 Identities=18% Similarity=0.162 Sum_probs=98.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccccccccccCCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGLNRDLSFK 152 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~~~~~~~~~ 152 (234)
++.++|++.+.++...+.++||+|.+||++.|+||||||||||+..+.|.+. +. +|++.++++++.. .
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La-~~F~~~G~~~l~~~~l~~--------l 72 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA-GQFSCTGELWLNEQRLDM--------L 72 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcc-cCcceeeEEEECCeeccc--------c
Confidence 4567899999999999999999999999999999999999999999999986 43 6999999999863 2
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCceEEEe-----------------------------------------cCcccHHHHHH
Q 026740 153 AEDRVENIRRIGEVAKLFADAGVICIAC-----------------------------------------LISPYRKDRDA 191 (234)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~ 191 (234)
|..++ +++.+||+.-+++... .+.+.+.+...
T Consensus 73 Pa~qR-------q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 73 PAAQR-------QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred chhhh-------heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence 22211 4555555544332211 11223333455
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcc----hhhHHHHHHcCcCCC
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARD----PKGLYKLAREGKVKG 232 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~----~~~l~~~~~~~~~~~ 232 (234)
.+.++..+.+ +++|+|++-++.-- ++-.|.+.++-.|+.
T Consensus 146 ~R~Lla~Pk~--lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPt 188 (213)
T COG4136 146 LRALLAQPKA--LLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPT 188 (213)
T ss_pred HHHHHhCcce--eeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 5667777777 78999999886433 344666666655553
No 291
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=5e-18 Score=166.80 Aligned_cols=152 Identities=19% Similarity=0.216 Sum_probs=104.7
Q ss_pred ccceeeceeeecCCc---cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cc
Q 026740 75 TVAKSTNILWHKNSV---DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NR 147 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~ 147 (234)
..++++|++++|+.+ .+++++||+|++|+.++|+|+|||||||++++|.+++. |.+|+|++||.|++..- ..
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccchhcchHHHHh
Confidence 368999999999755 68999999999999999999999999999999999999 99999999999987421 00
Q ss_pred cCCCChhhH-------HHHHHH------------H-------HHHHHHHHhcCceEE---EecCcccHHHHHHHHHhCCC
Q 026740 148 DLSFKAEDR-------VENIRR------------I-------GEVAKLFADAGVICI---ACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 148 ~~~~~~~~~-------~~~~~~------------~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ll~~ 198 (234)
.+++..++. .+++++ . ..+..+.+.+...+- ..++.+.+++.+++|+++..
T Consensus 428 ~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~ 507 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRN 507 (1228)
T ss_pred hcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhC
Confidence 111111110 000000 0 011111111111100 12355678888999999999
Q ss_pred CCceEEEEeCChhhhhhcchh---hHHHHHHcCc
Q 026740 199 GDFIEVFMDVPLQVCEARDPK---GLYKLAREGK 229 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~---~l~~~~~~~~ 229 (234)
+.+ +++|||++.|+....+ ...+++++|.
T Consensus 508 P~I--LLLDEaTSaLD~~se~~Vq~ALd~~~~gr 539 (1228)
T KOG0055|consen 508 PKI--LLLDEATSALDAESERVVQEALDKASKGR 539 (1228)
T ss_pred CCE--EEecCcccccCHHHHHHHHHHHHHhhcCC
Confidence 999 8999999999876654 4445555554
No 292
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.73 E-value=2e-17 Score=153.49 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=104.8
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-CccEEEEcCccccccc-----ccc
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCRHGL-----NRD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-~~G~i~~~g~~v~~~~-----~~~ 148 (234)
++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ + .+|+|+++|+++.... ...
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-QGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-cccCCeEEEecccCCCCCCHHHHHhh
Confidence 57999999999988889999999999999999999999999999999999765 4 6899999997652110 111
Q ss_pred CCCChhhHH----------HHHHH----------------HHHHHHHHHhcCceE------EEecCcccHHHHHHHHHhC
Q 026740 149 LSFKAEDRV----------ENIRR----------------IGEVAKLFADAGVIC------IACLISPYRKDRDACRSML 196 (234)
Q Consensus 149 ~~~~~~~~~----------~~~~~----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll 196 (234)
+++.+++.. ..... -..+...+..+++.. ...++.+.++....++.++
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 222222210 00000 001112222223221 1223455666778889999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+.+ +++|||+..++......+++.+++
T Consensus 418 ~~p~l--llLDEPt~gLD~~~~~~l~~~L~~ 446 (490)
T PRK10938 418 KHPTL--LILDEPLQGLDPLNRQLVRRFVDV 446 (490)
T ss_pred cCCCE--EEEcCccccCCHHHHHHHHHHHHH
Confidence 99998 899999999988888888876654
No 293
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.73 E-value=3.8e-17 Score=137.04 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=101.9
Q ss_pred cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCcccccc-cccc
Q 026740 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHG-LNRD 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~-~~~~ 148 (234)
++.++|++++|.+ +++++++||++++||+++|+||||||||||+++|+|+++. |.+|+|.++|+++... ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 4568899999964 5799999999999999999999999999999999998752 5899999999876321 0001
Q ss_pred CCCChh--------hHHHHHHHHH---------------HHHH-HHHhcCce-----EEEecCcccHHHHHHHHHhCCCC
Q 026740 149 LSFKAE--------DRVENIRRIG---------------EVAK-LFADAGVI-----CIACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 149 ~~~~~~--------~~~~~~~~~~---------------~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
+++.++ ...+++.... .... .+...+.. ....++.+.++....++.++..+
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 111111 1111111100 0001 11111211 11233455566777889999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+ +++|||+..++....+.+++.+++
T Consensus 163 ~i--lllDEP~~gLD~~~~~~~~~~l~~ 188 (226)
T cd03234 163 KV--LILDEPTSGLDSFTALNLVSTLSQ 188 (226)
T ss_pred CE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 88 899999999998888888887764
No 294
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.2e-17 Score=153.89 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=105.4
Q ss_pred ccceeeceeeecC---CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----c
Q 026740 75 TVAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----N 146 (234)
Q Consensus 75 ~~~~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~ 146 (234)
++++++|+++.|+ +..+++++||++++|++++|+|+||||||||+|+|+|++++|++|+|.++|+++.... .
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 4689999999993 4679999999999999999999999999999999999986348999999998764210 0
Q ss_pred ccCCCChhh-----------HHHHHHH-----------------HHHHHHHHHhcCce------EEEecCcccHHHHHHH
Q 026740 147 RDLSFKAED-----------RVENIRR-----------------IGEVAKLFADAGVI------CIACLISPYRKDRDAC 192 (234)
Q Consensus 147 ~~~~~~~~~-----------~~~~~~~-----------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 192 (234)
..+++.+++ ..+++.. ...+...+..+++. ....++.+.++....+
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 111221111 0011100 00122223333331 1234456677778899
Q ss_pred HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+.++..+.+ +++|||+..|+....+.+++.++
T Consensus 418 ~al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~ 449 (506)
T PRK13549 418 KCLLLNPKI--LILDEPTRGIDVGAKYEIYKLIN 449 (506)
T ss_pred HHHhhCCCE--EEEcCCCCCcCHhHHHHHHHHHH
Confidence 999999988 89999999998888888777665
No 295
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.5e-17 Score=149.86 Aligned_cols=142 Identities=16% Similarity=0.223 Sum_probs=100.2
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----ccccCC
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~~~~~~ 150 (234)
-++++|+++.|. ++++++|+||++++|+.++++||||+||||++|.|.+++. ..+|.|.+||+|++.- +...+|
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-v~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-VNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-ccCceEEEcCchHHHHHHHHHHHhcC
Confidence 588999999995 6789999999999999999999999999999999999998 8899999999998641 111233
Q ss_pred CChhhHH-------------------HHHHHHHHHHHH----HHhcCc--eEE----EecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAEDRV-------------------ENIRRIGEVAKL----FADAGV--ICI----ACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~~~~-------------------~~~~~~~~~~~~----~~~~~~--~~~----~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
..|++.. +..-..++.+++ ++-+.- ..+ ..++.+.+++.++++.+++.+.+
T Consensus 616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 3333210 111111112211 111100 001 22345667888999999999999
Q ss_pred eEEEEeCChhhhhhcchhh
Q 026740 202 IEVFMDVPLQVCEARDPKG 220 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~ 220 (234)
+++||.++.|+-.....
T Consensus 696 --IlLDEATSALDT~tER~ 712 (790)
T KOG0056|consen 696 --ILLDEATSALDTNTERA 712 (790)
T ss_pred --EEEcchhhhcCCccHHH
Confidence 89999999997554433
No 296
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=3.7e-17 Score=153.91 Aligned_cols=148 Identities=17% Similarity=0.136 Sum_probs=102.9
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-ccccccccC----
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL---- 149 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-v~~~~~~~~---- 149 (234)
+++++|+++.|+ ++++++|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.+++.. +. ......
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~-~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFNGEARPAPGIKVG-YLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEE-EEeccCCCCC
Confidence 688999999997 7789999999999999999999999999999999999988 899999987531 21 000000
Q ss_pred CCChhhHHHH-HHH-------H-------------------------------------HHHHHHHHhcCc----eEEEe
Q 026740 150 SFKAEDRVEN-IRR-------I-------------------------------------GEVAKLFADAGV----ICIAC 180 (234)
Q Consensus 150 ~~~~~~~~~~-~~~-------~-------------------------------------~~~~~~~~~~~~----~~~~~ 180 (234)
.++..+.... ... . ..+...+...++ ..+..
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 161 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK 161 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhh
Confidence 0111111000 000 0 000111111111 11233
Q ss_pred cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 181 ~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++.+.++....++.++..+.+ +++|||+..|+....+.+++.+++
T Consensus 162 LSgGqkqrv~la~al~~~p~l--LLLDEPt~~LD~~~~~~l~~~L~~ 206 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDM--LLLDEPTNHLDAESVAWLEQHLQE 206 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCChHHHHHHHHHHHh
Confidence 456667778899999999988 899999999998888888888775
No 297
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.72 E-value=5.6e-18 Score=155.86 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=99.2
Q ss_pred ccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC---CccEEEEcCccccccccc
Q 026740 75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGDNCRHGLNR 147 (234)
Q Consensus 75 ~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p---~~G~i~~~g~~v~~~~~~ 147 (234)
++++++|+++.|.. +.+++|+||++.+||+++|+|.|||||||++++|.|+++.. .+|+|.++|+++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~---- 79 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG---- 79 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc----
Confidence 37899999998853 26999999999999999999999999999999999999833 27999999998753
Q ss_pred cCCCChhhHHHHHHHHHHHHHH----------------------------------------HHhcCceE-------EEe
Q 026740 148 DLSFKAEDRVENIRRIGEVAKL----------------------------------------FADAGVIC-------IAC 180 (234)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~-------~~~ 180 (234)
++..+++..++. .++++ +..-++-. --.
T Consensus 80 ---l~~~~~r~~rg~--~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPhe 154 (539)
T COG1123 80 ---LSEREMRKLRGK--RIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQ 154 (539)
T ss_pred ---CCHHHHHHhccc--cEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcc
Confidence 222222111111 11111 11111100 011
Q ss_pred cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 181 ~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++.+.+++.-++.+++..+.+ ++.|||+..|+....+++.+.+++
T Consensus 155 LSGG~rQRv~iAmALa~~P~L--LIaDEPTTaLDvt~q~qIL~llk~ 199 (539)
T COG1123 155 LSGGMRQRVMIAMALALKPKL--LIADEPTTALDVTTQAQILDLLKD 199 (539)
T ss_pred cCchHHHHHHHHHHHhCCCCE--EEECCCccccCHHHHHHHHHHHHH
Confidence 234455666677888888888 899999999987777777766653
No 298
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.3e-18 Score=155.74 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=99.0
Q ss_pred cceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026740 76 VAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~ 150 (234)
.++.+|+++.|++- ++++|+||++++|+.++|+|+||||||||+++|+|+++ |++|+|.+||.+.+.... ..+.
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~-~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCccccccCHHHHHhHee
Confidence 34456999999754 89999999999999999999999999999999999998 899999999998764210 0011
Q ss_pred CChh-------hHHHHHHH------HHHHHHHHHhcCc-----------eEEEe----cCcccHHHHHHHHHhCCCCCce
Q 026740 151 FKAE-------DRVENIRR------IGEVAKLFADAGV-----------ICIAC----LISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 151 ~~~~-------~~~~~~~~------~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
+.++ ..++++.. -.++.......++ ..+.. .+.+.+++...+|+++....+
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l- 477 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL- 477 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE-
Confidence 1110 01111100 0011111111111 11111 244567778899999999888
Q ss_pred EEEEeCChhhhhhcchhhHHHHH
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
+++|||+..++.+..+.+-+.+
T Consensus 478 -~llDEpTA~LD~etE~~i~~~l 499 (559)
T COG4988 478 -LLLDEPTAHLDAETEQIILQAL 499 (559)
T ss_pred -EEecCCccCCCHhHHHHHHHHH
Confidence 8999999999888765544443
No 299
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=2e-17 Score=157.99 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=105.3
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc-cccccC-CC
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDL-SF 151 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~-~~~~~~-~~ 151 (234)
.++++++|+++.|++.++++++||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+ |.++.- ...... .+
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-p~~G~i~~-~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-ADSGRIHC-GTKLEVAYFDQHRAEL 394 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEE-CCCcEEEEEeCccccc
Confidence 347999999999998889999999999999999999999999999999999988 89999998 443211 000000 00
Q ss_pred Chh-hHHHHHHH----------HHHHHHHHHhcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026740 152 KAE-DRVENIRR----------IGEVAKLFADAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE 214 (234)
Q Consensus 152 ~~~-~~~~~~~~----------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~ 214 (234)
.+. ...+.+.. ...+...+..+++ ..+..++.+.+++...++.++..+.+ +++|||++.|+
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l--LlLDEPt~~LD 472 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL--LILDEPTNDLD 472 (635)
T ss_pred CCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCC
Confidence 000 01111110 0011222222222 12234556667777889999999998 89999999999
Q ss_pred hcchhhHHHHHHc
Q 026740 215 ARDPKGLYKLARE 227 (234)
Q Consensus 215 ~R~~~~l~~~~~~ 227 (234)
......+.+.+++
T Consensus 473 ~~~~~~l~~~l~~ 485 (635)
T PRK11147 473 VETLELLEELLDS 485 (635)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888775
No 300
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=2.7e-17 Score=157.14 Aligned_cols=149 Identities=14% Similarity=0.167 Sum_probs=103.4
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----c-cccCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L-NRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~-~~~~~ 150 (234)
+++++|+++.|++..+++|+||++++|++++|+||||||||||+|+|+|++. |++|+|.++|...... . ....+
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-p~~G~I~~~~~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-LDDGRIIYEQDLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence 5789999999999899999999999999999999999999999999999888 8999999987421100 0 00001
Q ss_pred CChhhHH--------------------------HHHHHH----------------HHHHHHHHhcCc---eEEEecCccc
Q 026740 151 FKAEDRV--------------------------ENIRRI----------------GEVAKLFADAGV---ICIACLISPY 185 (234)
Q Consensus 151 ~~~~~~~--------------------------~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~ 185 (234)
+..+... +.+... ..+..++...++ ..+..++.+.
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGe 161 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGW 161 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHH
Confidence 1111000 000000 011112222222 1223345666
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 186 RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 186 ~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++....++.++..+.+ +++|||++.|+......+.+.+++
T Consensus 162 kqRv~LAraL~~~P~l--LLLDEPt~~LD~~~~~~L~~~L~~ 201 (635)
T PRK11147 162 LRKAALGRALVSNPDV--LLLDEPTNHLDIETIEWLEGFLKT 201 (635)
T ss_pred HHHHHHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHh
Confidence 7778899999999999 899999999988888777777764
No 301
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.72 E-value=3.8e-17 Score=128.63 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=102.5
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh-
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED- 155 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~- 155 (234)
++++++++.||..+++.|++|+-++|+.++++||||+|||||+|.|+-+.. |.+|+..+-|..... +-.+.+
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~------s~~~~~k 75 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDF------SKTPSDK 75 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-CCCCeEEeccccccc------ccCccHH
Confidence 678999999999999999999999999999999999999999999998666 999999998765431 122222
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEec-------------------------------------------CcccHHHHHHH
Q 026740 156 RVENIRRIGEVAKLFADAGVICIACL-------------------------------------------ISPYRKDRDAC 192 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 192 (234)
....+++ .++++||.+.+.+.... +.+..++..++
T Consensus 76 ~i~~lr~--~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 76 AIRDLRR--NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHH--hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHH
Confidence 1122332 78888988776543211 12234455778
Q ss_pred HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++++-.+.+ +++|+|+..|+..-.....+-++
T Consensus 154 ralmmkpqv--llfdeptaaldpeitaqvv~iik 185 (242)
T COG4161 154 RALMMEPQV--LLFDEPTAALDPEITAQIVSIIK 185 (242)
T ss_pred HHHhcCCcE--EeecCcccccCHHHHHHHHHHHH
Confidence 888888887 89999999996555444444444
No 302
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.72 E-value=4.7e-17 Score=137.53 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=96.7
Q ss_pred eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh-h-----
Q 026740 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA-E----- 154 (234)
Q Consensus 84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~-~----- 154 (234)
+.|+.+++++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++.... ...+++.+ +
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 56778889999999999999999999999999999999999988 89999999998643110 00111110 0
Q ss_pred ---hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026740 155 ---DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE 214 (234)
Q Consensus 155 ---~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~ 214 (234)
...+++... ..+...+...++.. ...++.+.++....++.++..+.+ +++|||+..++
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD 185 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI--LFLDEPTIGLD 185 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCC
Confidence 011111100 01112222222211 122345556667888999999988 89999999998
Q ss_pred hcchhhHHHHHHc
Q 026740 215 ARDPKGLYKLARE 227 (234)
Q Consensus 215 ~R~~~~l~~~~~~ 227 (234)
....+.+++.+++
T Consensus 186 ~~~~~~l~~~l~~ 198 (236)
T cd03267 186 VVAQENIRNFLKE 198 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
No 303
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=99.72 E-value=1.5e-17 Score=144.68 Aligned_cols=135 Identities=57% Similarity=0.995 Sum_probs=121.0
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI 178 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (234)
--+|..+++.|.||+||||+.-+|...+..-+--.+.+||++++..++..++++++++.+++++++.++.+|.+.++..+
T Consensus 47 gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvci 126 (627)
T KOG4238|consen 47 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCI 126 (627)
T ss_pred CccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceee
Confidence 34789999999999999999988888776334455789999999999888999999999999999999999999999999
Q ss_pred EecCcccHHHHHHHHHhCCCCCc--eEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 179 ACLISPYRKDRDACRSMLPEGDF--IEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 179 ~~~~~~~~~~~~~~~~ll~~~~l--~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
..|..+..++|.-++.+-+..++ .+++.+.|.++|.+||+++||+++|+|+|.||
T Consensus 127 tsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gf 183 (627)
T KOG4238|consen 127 TSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGF 183 (627)
T ss_pred ehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccc
Confidence 99999999999888888665554 57899999999999999999999999999987
No 304
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.72 E-value=1.2e-17 Score=171.29 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=104.5
Q ss_pred cceeeceeeecC---CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----------------------
Q 026740 76 VAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----------------------- 129 (234)
Q Consensus 76 ~~~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p----------------------- 129 (234)
-++++||+|+|. +.++++|+||++++|+.++|+|+||||||||+++|+|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd-p~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD-LKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC-Cccccccccccccccccccccccc
Confidence 488999999995 3579999999999999999999999999999999999998 6
Q ss_pred -------------------------------CccEEEEcCccccccc----cccCCCChhhH-------HHHHHH-----
Q 026740 130 -------------------------------GKLTYILDGDNCRHGL----NRDLSFKAEDR-------VENIRR----- 162 (234)
Q Consensus 130 -------------------------------~~G~i~~~g~~v~~~~----~~~~~~~~~~~-------~~~~~~----- 162 (234)
.+|+|++||.|++... ...+++.+++. ++++.+
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA 1323 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCC
Confidence 6899999999986411 11122222210 111110
Q ss_pred -------HHHHH---HHHHh-c-Cc-eEE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 163 -------IGEVA---KLFAD-A-GV-ICI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 163 -------~~~~~---~~~~~-~-~~-~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
....+ ..... + +. ..+ ..++.+.+++-.+||+++..+.+ +++|||++.|+....+.+.+.+
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~I--LLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKI--LLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHHHHHHHHHH
Confidence 00000 00000 0 00 011 12345667888999999999999 8999999999888888887776
Q ss_pred Hc
Q 026740 226 RE 227 (234)
Q Consensus 226 ~~ 227 (234)
.+
T Consensus 1402 ~~ 1403 (1466)
T PTZ00265 1402 VD 1403 (1466)
T ss_pred HH
Confidence 54
No 305
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.72 E-value=3e-17 Score=151.57 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=103.4
Q ss_pred ccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc--C
Q 026740 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD--L 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~--~ 149 (234)
++++++|+++.|++ +.+++++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|.+........ .
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-P~sGeI~I~G~~~~i~~~~~l~~ 98 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-PNKGTVDIKGSAALIAISSGLNG 98 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCceEEEECCEeeeEEeccccCC
Confidence 46889999999976 468999999999999999999999999999999999988 89999999997521100000 0
Q ss_pred CCChhhHHHHHH--------HH-HHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026740 150 SFKAEDRVENIR--------RI-GEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA 215 (234)
Q Consensus 150 ~~~~~~~~~~~~--------~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~ 215 (234)
.++..+...... .. ..+...+...++ .....++.+.+++...+++++..+.+ +++|||+..|+.
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L--LLLDEPTsgLD~ 176 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI--LVIDEALSVGDQ 176 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE--EEEECCcccCCH
Confidence 011111100000 00 011112222222 12234556667777889999999988 899999999988
Q ss_pred cchhhHHHHHHc
Q 026740 216 RDPKGLYKLARE 227 (234)
Q Consensus 216 R~~~~l~~~~~~ 227 (234)
.....+++.+++
T Consensus 177 ~sr~~LlelL~e 188 (549)
T PRK13545 177 TFTKKCLDKMNE 188 (549)
T ss_pred HHHHHHHHHHHH
Confidence 877777777753
No 306
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.7e-17 Score=156.79 Aligned_cols=150 Identities=18% Similarity=0.137 Sum_probs=104.0
Q ss_pred cccceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc------
Q 026740 74 STVAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------ 143 (234)
Q Consensus 74 ~~~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~------ 143 (234)
.++++++|+++.|+ ..++++|+||++++||+++|+|+||||||||+|+|+|++. |.+|+|.++|.++..
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-QAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCeEEEECCEEecccccccc
Confidence 35799999999996 3579999999999999999999999999999999999998 899999998853310
Q ss_pred -----------cc-cccCCCChhh----------HHHHHHHH-------------HHHHHHHHhcCce--------EEEe
Q 026740 144 -----------GL-NRDLSFKAED----------RVENIRRI-------------GEVAKLFADAGVI--------CIAC 180 (234)
Q Consensus 144 -----------~~-~~~~~~~~~~----------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~ 180 (234)
.. ...+++..++ ..+++... ..+..++...++. ....
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 00 0011211111 11111100 1122233333331 1233
Q ss_pred cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 181 ~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++.+.+++..++++++..+.+ +++|||+..|+......+++.++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~l--LllDEPt~~LD~~~~~~l~~ll~ 212 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAV--LIADEPTTALDVTIQAQILQLIK 212 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCE--EEEeCCCCccCHHHHHHHHHHHH
Confidence 456677788899999999998 89999999998777666766655
No 307
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.2e-17 Score=157.80 Aligned_cols=149 Identities=14% Similarity=0.085 Sum_probs=105.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc-ccccccccc--CCC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRD--LSF 151 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~-~v~~~~~~~--~~~ 151 (234)
++++++|+++.|++..+++|+||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+++. .+.. .... ..+
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~igy-~~Q~~~~~l 388 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-PVSGEIGLAKGIKLGY-FAQHQLEFL 388 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCCEEEEE-ecCcchhhC
Confidence 47999999999998899999999999999999999999999999999999988 89999998642 2211 0000 001
Q ss_pred Chh-hHHHHHHH------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 152 KAE-DRVENIRR------IGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 152 ~~~-~~~~~~~~------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
.+. .....+.. -..+..++..+++. .+..++.+.+++...++.++..+++ +++|+|+..|+....
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l--LlLDEPt~~LD~~~~ 466 (638)
T PRK10636 389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL--LLLDEPTNHLDLDMR 466 (638)
T ss_pred CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHH
Confidence 111 01111100 00122223333321 2234556667778889999999998 899999999988888
Q ss_pred hhHHHHHHc
Q 026740 219 KGLYKLARE 227 (234)
Q Consensus 219 ~~l~~~~~~ 227 (234)
..+++.+++
T Consensus 467 ~~l~~~L~~ 475 (638)
T PRK10636 467 QALTEALID 475 (638)
T ss_pred HHHHHHHHH
Confidence 888888775
No 308
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.71 E-value=8e-17 Score=150.58 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=100.0
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEc------------------
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILD------------------ 137 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~------------------ 137 (234)
++++|+++.|+++.+++++||++.+|++++|+||||||||||+|+|+|++. .|++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 467899999988889999999999999999999999999999999999862 3899999987
Q ss_pred -----Ccccc-------c-------cccccCCCChh---------hHHHHHHH------------HHHHHHHHHhcCce-
Q 026740 138 -----GDNCR-------H-------GLNRDLSFKAE---------DRVENIRR------------IGEVAKLFADAGVI- 176 (234)
Q Consensus 138 -----g~~v~-------~-------~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~~- 176 (234)
|.++. . .....+++.++ ...+.+.. ...+..++...++.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 22210 0 00001111111 01111110 00122223333321
Q ss_pred ----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 177 ----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 177 ----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
....++.+.+++...+++++..+.+ +++|||++.|+......+++.++
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~ 212 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFL--FLADEPTGTLDPQTAKLVHNALE 212 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEeeCCcccCCHHHHHHHHHHHH
Confidence 1233455667778889999999998 89999999998888888766554
No 309
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=4.1e-17 Score=130.78 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=59.5
Q ss_pred ccceeeceeeecCC---------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 75 TVAKSTNILWHKNS---------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 75 ~~~~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
++++++|+++.|.. ..+++.|||++++|+.++|+|.||||||||+|+|+|+++ |++|+|+++|+.+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-PTsG~il~n~~~L~ 78 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGEILINDHPLH 78 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-CCCceEEECCcccc
Confidence 46778888877632 468999999999999999999999999999999999998 99999999998764
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=2.4e-17 Score=155.32 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=104.7
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-cccccccc-----
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD----- 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-v~~~~~~~----- 148 (234)
++++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+++.. +. ....+
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~-~v~q~~~~~~ 400 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-PDSGTIKIGETVKLA-YVDQSRDALD 400 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCceEEE-EEeCchhhcC
Confidence 47999999999998889999999999999999999999999999999999988 899999985421 11 00000
Q ss_pred CCCChhhHHHH-HH------HHHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026740 149 LSFKAEDRVEN-IR------RIGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA 215 (234)
Q Consensus 149 ~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~ 215 (234)
..++..+.... .. .-......+..+++. ....++.+.++....++.++..+.+ +++|||+..|+.
T Consensus 401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~~LD~ 478 (556)
T PRK11819 401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV--LLLDEPTNDLDV 478 (556)
T ss_pred CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCH
Confidence 00111111000 00 000011122223321 1233456667777889999999999 899999999998
Q ss_pred cchhhHHHHHHc
Q 026740 216 RDPKGLYKLARE 227 (234)
Q Consensus 216 R~~~~l~~~~~~ 227 (234)
.....+++.+++
T Consensus 479 ~~~~~l~~~l~~ 490 (556)
T PRK11819 479 ETLRALEEALLE 490 (556)
T ss_pred HHHHHHHHHHHh
Confidence 888999888875
No 311
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.71 E-value=8e-17 Score=150.57 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=103.6
Q ss_pred ccceeeceeeecC-----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc-Ccc---cccc-
Q 026740 75 TVAKSTNILWHKN-----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDN---CRHG- 144 (234)
Q Consensus 75 ~~~~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~-g~~---v~~~- 144 (234)
++++++|+++.|+ ...+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|+++ |.+ +...
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccc
Confidence 4799999999994 2579999999999999999999999999999999999988 899999995 532 1110
Q ss_pred ------ccccCCCChhh--------HHHHHHH-----------HHHHHHHHHhcCceE----------EEecCcccHHHH
Q 026740 145 ------LNRDLSFKAED--------RVENIRR-----------IGEVAKLFADAGVIC----------IACLISPYRKDR 189 (234)
Q Consensus 145 ------~~~~~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 189 (234)
....+++.+++ ..+++.. -..+...+..+++.. ...++.+.+++.
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv 436 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence 00011111111 1111110 001222233333321 123455667777
Q ss_pred HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..+++++..+.+ +++|||+..|+......+++.++
T Consensus 437 ~laral~~~p~l--LllDEPt~~LD~~~~~~l~~~l~ 471 (520)
T TIGR03269 437 ALAQVLIKEPRI--VILDEPTGTMDPITKVDVTHSIL 471 (520)
T ss_pred HHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 889999999988 89999999999888888888774
No 312
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.70 E-value=1.8e-17 Score=141.11 Aligned_cols=142 Identities=14% Similarity=0.208 Sum_probs=92.3
Q ss_pred eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCCCCh
Q 026740 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLSFKA 153 (234)
Q Consensus 78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~~~~ 153 (234)
+++|+++. .+++++||++++|++++|+|+||||||||+++|+|+++ + +|+|.++|+++..... ..+++.+
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 35666664 27999999999999999999999999999999999875 4 8999999987642110 0011111
Q ss_pred hh--------HHHHHHHH-----------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC-------CCCce
Q 026740 154 ED--------RVENIRRI-----------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP-------EGDFI 202 (234)
Q Consensus 154 ~~--------~~~~~~~~-----------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~-------~~~l~ 202 (234)
++ ..+++... ..+...+...++. ....++.+.++....+++++. .+.+
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l- 154 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL- 154 (248)
T ss_pred ccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE-
Confidence 11 11111100 0111222222221 112334555666778888875 4566
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++......+++.+++
T Consensus 155 -lllDEPt~~LD~~~~~~l~~~L~~ 178 (248)
T PRK03695 155 -LLLDEPMNSLDVAQQAALDRLLSE 178 (248)
T ss_pred -EEEcCCcccCCHHHHHHHHHHHHH
Confidence 899999999988888888777654
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.70 E-value=9.1e-17 Score=151.27 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=104.9
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc-ccccccccc-----
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRD----- 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~-~v~~~~~~~----- 148 (234)
++++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|++++. .+.. ...+
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~~~~~i~~-v~q~~~~~~ 398 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-PDSGTIKIGETVKLAY-VDQSRDALD 398 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCeEEEECCceEEEE-EeCCccccC
Confidence 57999999999998889999999999999999999999999999999999988 89999998542 1110 0000
Q ss_pred CCCChhhHHHH-HH------HHHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026740 149 LSFKAEDRVEN-IR------RIGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA 215 (234)
Q Consensus 149 ~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~ 215 (234)
..++..+.... .. .-......+..+++. ....++.+.++....++.++..+.+ +++|||+..|+.
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l--llLDEPt~~LD~ 476 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV--LLLDEPTNDLDV 476 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCH
Confidence 00111111000 00 000011122223321 1234456677778899999999998 899999999998
Q ss_pred cchhhHHHHHHc
Q 026740 216 RDPKGLYKLARE 227 (234)
Q Consensus 216 R~~~~l~~~~~~ 227 (234)
.....+++.+++
T Consensus 477 ~~~~~l~~~l~~ 488 (552)
T TIGR03719 477 ETLRALEEALLE 488 (552)
T ss_pred HHHHHHHHHHHH
Confidence 888888888875
No 314
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.70 E-value=2.8e-17 Score=153.98 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=105.5
Q ss_pred ccceeeceeeecC-----------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026740 75 TVAKSTNILWHKN-----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (234)
Q Consensus 75 ~~~~~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~ 143 (234)
++++++|+++.|+ ++.+++++||++++|++++|+||||||||||+|+|+|++ |.+|+|+++|+++..
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--NSQGEIWFDGQPLHN 351 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--CCCcEEEECCEEccc
Confidence 4789999999995 357999999999999999999999999999999999987 478999999987642
Q ss_pred cc-------cccCCCChhh----------HHHHHHHH--------------HHHHHHHHhcCce------EEEecCcccH
Q 026740 144 GL-------NRDLSFKAED----------RVENIRRI--------------GEVAKLFADAGVI------CIACLISPYR 186 (234)
Q Consensus 144 ~~-------~~~~~~~~~~----------~~~~~~~~--------------~~~~~~~~~~~~~------~~~~~~~~~~ 186 (234)
.. ...+++.+++ ..+++... ..+...+..+++. ....++.+.+
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 10 1112222211 11111100 0112223333331 1233455667
Q ss_pred HHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 187 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 187 ~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++...+++++..+.+ +++|||+..|+......+++.+++
T Consensus 432 qrv~la~al~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 470 (529)
T PRK15134 432 QRIAIARALILKPSL--IILDEPTSSLDKTVQAQILALLKS 470 (529)
T ss_pred HHHHHHHHHhCCCCE--EEeeCCccccCHHHHHHHHHHHHH
Confidence 778889999999988 899999999998888888888763
No 315
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.70 E-value=2.2e-17 Score=158.07 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=104.4
Q ss_pred cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026740 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------ 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------ 145 (234)
+++++|++++|++ ..+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-PTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEcCcCCHHHHHH
Confidence 6889999999953 469999999999999999999999999999999999998 89999999998865310
Q ss_pred --cccCCCChhh--------HHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCC
Q 026740 146 --NRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 146 --~~~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~ 198 (234)
...+++..++ ..+++.. .......+...++. ....++.+.++....+++++..
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 0111111110 0111110 00112222222221 1123445566677889999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+ +++|||+..++....+.+.+.+++
T Consensus 163 P~l--LllDEP~~gLD~~s~~~l~~ll~~ 189 (648)
T PRK10535 163 GQV--ILADEPTGALDSHSGEEVMAILHQ 189 (648)
T ss_pred CCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence 988 899999999998888887777653
No 316
>PLN03211 ABC transporter G-25; Provisional
Probab=99.70 E-value=4.4e-17 Score=155.95 Aligned_cols=147 Identities=19% Similarity=0.180 Sum_probs=103.1
Q ss_pred eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC--ccEEEEcCccccccccccCCCChhh
Q 026740 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~--~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
..+|+++.|+++.+++|+|+++++||+++|+||||||||||+++|+|+++ |+ +|+|.++|+++.......+++.+++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-GNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEEEECCEECchhhccceEEECcc
Confidence 35678889988999999999999999999999999999999999999887 64 8999999987632111111111111
Q ss_pred --------HHHHHHH---------------HHHHHHHHHhcCceE----------EEecCcccHHHHHHHHHhCCCCCce
Q 026740 156 --------RVENIRR---------------IGEVAKLFADAGVIC----------IACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 156 --------~~~~~~~---------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
..+.+.. ...+..++...++.. ...++.+.+++...+++++..+.+
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i- 227 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE-
Confidence 1111111 001222333333321 112455667778899999999988
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+......+.+.+++
T Consensus 228 -LlLDEPtsgLD~~~~~~l~~~L~~ 251 (659)
T PLN03211 228 -LILDEPTSGLDATAAYRLVLTLGS 251 (659)
T ss_pred -EEEeCCCCCcCHHHHHHHHHHHHH
Confidence 899999999988888877777663
No 317
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=7.9e-17 Score=131.98 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=89.2
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHH
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA 167 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (234)
.+++++++|++|.+|+++.|+|-||||||||++.|+|-+. |++|.|.++|.|+++ ++...++. .++
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-~t~G~I~Idg~dVtk-------~~~~~RA~------~la 83 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTK-------KSVAKRAN------LLA 83 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-cCCceEEECceeccc-------CCHHHHhh------HHH
Confidence 4579999999999999999999999999999999999998 999999999999985 45554443 233
Q ss_pred HHHHhcCc----------------------------------------------------eEEEecCcccHHHHHHHHHh
Q 026740 168 KLFADAGV----------------------------------------------------ICIACLISPYRKDRDACRSM 195 (234)
Q Consensus 168 ~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~~~l 195 (234)
.+||++.. ..+..++.+.++....+.+.
T Consensus 84 rVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAt 163 (263)
T COG1101 84 RVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMAT 163 (263)
T ss_pred HHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHh
Confidence 33443321 01111233444555566777
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHH
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~ 224 (234)
+..+.+ +++||-+..|+++...-+.++
T Consensus 164 l~~pki--LLLDEHTAALDPkta~~vm~l 190 (263)
T COG1101 164 LHPPKI--LLLDEHTAALDPKTAEFVMEL 190 (263)
T ss_pred cCCCcE--EEecchhhcCCcchHHHHHHH
Confidence 777777 899999999977766555443
No 318
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.70 E-value=6.6e-17 Score=138.30 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=95.7
Q ss_pred eceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE-----------EcCcccccccc-
Q 026740 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHGLN- 146 (234)
Q Consensus 80 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~-----------~~g~~v~~~~~- 146 (234)
.+++++|+.. .+++|+|+ +.+|++++|+||||||||||+++|+|+++ |++|+|. ++|.++.....
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4688999765 59999994 99999999999999999999999999998 9999996 77877642100
Q ss_pred -----ccCCCChhh-----------HHHHHH---HHHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCce
Q 026740 147 -----RDLSFKAED-----------RVENIR---RIGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 147 -----~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
..+++..+. ....+. .-..+..++...++.. ...++.+.++....++.++..+.+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i- 160 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF- 160 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE-
Confidence 000010000 000000 0011222233333221 122344556677888999998888
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|+|+..++....+.+++.+++
T Consensus 161 -lllDEPts~LD~~~~~~l~~~l~~ 184 (255)
T cd03236 161 -YFFDEPSSYLDIKQRLNAARLIRE 184 (255)
T ss_pred -EEEECCCCCCCHHHHHHHHHHHHH
Confidence 899999999988877777766653
No 319
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.7e-17 Score=150.11 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=103.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|+++.+ ..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-CCccEEEECCEECCCCCHHHHHHCCC
Confidence 478999999874 468999999999999999999999999999999999998 89999999998774211 0112
Q ss_pred CCChhhHH----------------HHHHHH-------------HHHHHHHHhcCc------eEEEecCcccHHHHHHHHH
Q 026740 150 SFKAEDRV----------------ENIRRI-------------GEVAKLFADAGV------ICIACLISPYRKDRDACRS 194 (234)
Q Consensus 150 ~~~~~~~~----------------~~~~~~-------------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 194 (234)
++.++++. ..+... ..+...+...++ .....++.+.++....++.
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 405 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW 405 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHH
Confidence 22222110 000000 001111122121 1223345666777788899
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++..+.+ +++|||+..++......+++.++
T Consensus 406 l~~~p~i--llLDEPt~gLD~~~~~~~~~~l~ 435 (491)
T PRK10982 406 LLTQPEI--LMLDEPTRGIDVGAKFEIYQLIA 435 (491)
T ss_pred HhcCCCE--EEEcCCCcccChhHHHHHHHHHH
Confidence 9999998 89999999999999988888774
No 320
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.70 E-value=1.3e-16 Score=134.30 Aligned_cols=133 Identities=22% Similarity=0.177 Sum_probs=91.0
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------cccCCCCh-hhHHHHHHHH-
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSFKA-EDRVENIRRI- 163 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------~~~~~~~~-~~~~~~~~~~- 163 (234)
++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++.... .....+.+ ....+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 478999999999999999999999999999999998 89999999998864311 00000000 0111111100
Q ss_pred -------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 164 -------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 164 -------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
..+...+..+++. ....++.+.++....++.++..+.+ +++|||+..++....+.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKV--LLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCCcCCCHHHHHHHHHHH
Confidence 0112222222321 1123455667777889999999988 8999999999988888888777
Q ss_pred Hc
Q 026740 226 RE 227 (234)
Q Consensus 226 ~~ 227 (234)
++
T Consensus 158 ~~ 159 (230)
T TIGR01184 158 MQ 159 (230)
T ss_pred HH
Confidence 54
No 321
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=1.4e-17 Score=134.50 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=64.2
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC-ccccc
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRH 143 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g-~~v~~ 143 (234)
+++++++++.+|++..+++++||++.+||.-+|+|||||||||++..|+|..+ |+.|+++++| .+++.
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~~ 72 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLTK 72 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-CCcceEEEcCchhhcc
Confidence 47889999999999999999999999999999999999999999999999888 8999999999 77764
No 322
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.69 E-value=1e-17 Score=173.93 Aligned_cols=150 Identities=11% Similarity=0.114 Sum_probs=109.2
Q ss_pred ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccC
Q 026740 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~ 149 (234)
.+++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|++. |++|+|+++|+++.... ...+
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-VTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECcchHHHHhhhE
Confidence 47899999999985 579999999999999999999999999999999999998 99999999998874211 1112
Q ss_pred CCChhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 150 SFKAED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
++.++. ..+++.... .+...+...++. ....++.+.++....+++++..+.+ +
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V--L 2092 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL--V 2092 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 222221 111111100 111223333331 1233455667777889999999998 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..++...++.+++.+++
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987764
No 323
>PLN03232 ABC transporter C family member; Provisional
Probab=99.69 E-value=1.6e-17 Score=171.15 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=105.2
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++|++++|.+ .++|+|+||+|++||.++|+|+||||||||+++|.|+++ |++|+|.+||.|+.... ...+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~-p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE-LEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCceEEECCEEhhhCCHHHHHhhc
Confidence 5889999999953 479999999999999999999999999999999999998 99999999999986411 0011
Q ss_pred CCChh----------------------hHHHHHHHHHHHHHHHHh-c-Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAE----------------------DRVENIRRIGEVAKLFAD-A-GVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~----------------------~~~~~~~~~~~~~~~~~~-~-~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+| +..+..+.. ........ + ++- .+ ..++.+.++.-..+|+++....
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a-~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA-HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHc-CCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 11111 111111110 00011111 1 111 11 1245567778889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+.+.+++
T Consensus 1392 I--LILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1392 I--LVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred E--EEEECCcccCCHHHHHHHHHHHHH
Confidence 8 899999999988888878777765
No 324
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=8.7e-17 Score=135.78 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=85.2
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc---c------------cCCCC
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---R------------DLSFK 152 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~---~------------~~~~~ 152 (234)
...++.|+||+|++|++++++|+|||||||++|+|+|++. |++|.|.++|.+...... . .|...
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 4568999999999999999999999999999999999999 999999999987542000 0 00011
Q ss_pred hhhHHHHHHHH------------HHHHHHHHh--cCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 153 AEDRVENIRRI------------GEVAKLFAD--AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 153 ~~~~~~~~~~~------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
..+.....+.+ .....++.- +-..++-.++.+.+...+.+.+++..+.+ +++|||+-.|+--..
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~V--LfLDEpTvgLDV~aq 192 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKV--LFLDEPTVGLDVNAQ 192 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcE--EEecCCccCcchhHH
Confidence 00000000000 000000000 00011122233444556788889999988 899999999965555
Q ss_pred hhHHHHHH
Q 026740 219 KGLYKLAR 226 (234)
Q Consensus 219 ~~l~~~~~ 226 (234)
..+..-++
T Consensus 193 ~~ir~Flk 200 (325)
T COG4586 193 ANIREFLK 200 (325)
T ss_pred HHHHHHHH
Confidence 55554443
No 325
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.69 E-value=1.6e-16 Score=136.50 Aligned_cols=133 Identities=20% Similarity=0.166 Sum_probs=88.5
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccC--CCChhhHHHHHHH---
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--SFKAEDRVENIRR--- 162 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~--~~~~~~~~~~~~~--- 162 (234)
.+.+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+.........+ .++.. +++..
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~tv~---enl~~~~~ 111 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-PTVGKVDRNGEVSVIAISAGLSGQLTGI---ENIEFKML 111 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEeEEecccCCCCCCcHH---HHHHHHHH
Confidence 4568999999999999999999999999999999999998 899999999853110000000 01111 11100
Q ss_pred --------H-HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 163 --------I-GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 163 --------~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
. ..+..+....++. ....++.+.++....+++++..+.+ +++|+|+..++....+.+++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~i--LlLDEPt~gLD~~~~~~l~~~L~ 187 (264)
T PRK13546 112 CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDI--LVIDEALSVGDQTFAQKCLDKIY 187 (264)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCE--EEEeCccccCCHHHHHHHHHHHH
Confidence 0 0011111111211 1233455566667788999999988 89999999998777777777664
No 326
>PLN03130 ABC transporter C family member; Provisional
Probab=99.69 E-value=1.8e-17 Score=171.31 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=105.9
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++|++++|.+ .++|+|+||+|++||.++|+|+||||||||+++|.|++. |++|+|.+||.|+.... ...+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~-p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE-LERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCEecccCCHHHHHhcc
Confidence 5889999999964 369999999999999999999999999999999999998 99999999999986421 0111
Q ss_pred CCChh----------------------hHHHHHHHHHHHHHHHHh-c-Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAE----------------------DRVENIRRIGEVAKLFAD-A-GVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~----------------------~~~~~~~~~~~~~~~~~~-~-~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.++ +..+..+.. ........ + ++- .+ ..++.+.++.-..+|+++....
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a-~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERA-HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHc-CcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 11111 111111110 00011111 0 111 11 1345567788899999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+.+.+++
T Consensus 1395 I--LILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1395 I--LVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred E--EEEECCCCCCCHHHHHHHHHHHHH
Confidence 8 899999999988888888777765
No 327
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.69 E-value=2.3e-16 Score=136.84 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=95.3
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~ 153 (234)
.+.++++|+++. ...+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|. +.. ......+.+
T Consensus 37 ~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g~-i~y-v~q~~~l~~ 111 (282)
T cd03291 37 DNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGR-ISF-SSQFSWIMP 111 (282)
T ss_pred CCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-EEE-EeCcccccc
Confidence 457889999985 4679999999999999999999999999999999999988 89999999873 210 000000000
Q ss_pred hhHHHHHH-----------HHHH---HHHHHHhcCce---E----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026740 154 EDRVENIR-----------RIGE---VAKLFADAGVI---C----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212 (234)
Q Consensus 154 ~~~~~~~~-----------~~~~---~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~ 212 (234)
....+++. .... +...+...... . ...++.+.++....++.++..+.+ +++|+|+..
T Consensus 112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i--LiLDEPt~g 189 (282)
T cd03291 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGY 189 (282)
T ss_pred cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECCCcc
Confidence 00011100 0000 00111110000 0 123445566777888999999988 899999999
Q ss_pred hhhcchhhHHHHH
Q 026740 213 CEARDPKGLYKLA 225 (234)
Q Consensus 213 l~~R~~~~l~~~~ 225 (234)
++......+++.+
T Consensus 190 LD~~~~~~l~~~l 202 (282)
T cd03291 190 LDVFTEKEIFESC 202 (282)
T ss_pred CCHHHHHHHHHHH
Confidence 9887777676543
No 328
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.68 E-value=1.4e-16 Score=133.93 Aligned_cols=134 Identities=21% Similarity=0.181 Sum_probs=90.8
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC----CccEEEEcCccccccc--cccCCCChhhH--------
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHGL--NRDLSFKAEDR-------- 156 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p----~~G~i~~~g~~v~~~~--~~~~~~~~~~~-------- 156 (234)
+++++||++++|++++|+||||||||||+++|+|+++ | ++|+|.++|+++.... ...+++.+++.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 4789999999999999999999999999999999988 7 8999999998764210 01111111110
Q ss_pred --HHHH----HH--------HHHHHHHHHhcCce--------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026740 157 --VENI----RR--------IGEVAKLFADAGVI--------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE 214 (234)
Q Consensus 157 --~~~~----~~--------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~ 214 (234)
.+++ .. ...+...+..+++. ....++.+.++....+++++..+.+ +++|||+..++
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~v--llLDEPt~~LD 157 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF--LIADEPTTDLD 157 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEcCCccccC
Confidence 0000 00 00111222222221 1123455566777889999999988 89999999998
Q ss_pred hcchhhHHHHHHc
Q 026740 215 ARDPKGLYKLARE 227 (234)
Q Consensus 215 ~R~~~~l~~~~~~ 227 (234)
......+++.+++
T Consensus 158 ~~~~~~l~~~l~~ 170 (230)
T TIGR02770 158 VVNQARVLKLLRE 170 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877777664
No 329
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.68 E-value=3.4e-17 Score=148.02 Aligned_cols=150 Identities=25% Similarity=0.235 Sum_probs=105.8
Q ss_pred ccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----cccc
Q 026740 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~~~~ 148 (234)
..+.++++++... .+++++++||++.+|+.++|+||||||||||+|+|.|... |.+|.|++||-++..- +...
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~-p~~G~VRLDga~l~qWd~e~lG~h 411 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-PTSGSVRLDGADLRQWDREQLGRH 411 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc-cCCCcEEecchhhhcCCHHHhccc
Confidence 3678888888764 4579999999999999999999999999999999999998 9999999999988641 1122
Q ss_pred CCCChhhH-------HHHHHHHHH------H---------HHHHHh-cCc--eEE----EecCcccHHHHHHHHHhCCCC
Q 026740 149 LSFKAEDR-------VENIRRIGE------V---------AKLFAD-AGV--ICI----ACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 149 ~~~~~~~~-------~~~~~~~~~------~---------~~~~~~-~~~--~~~----~~~~~~~~~~~~~~~~ll~~~ 199 (234)
+||-|++. .+++.++.. + -.+... +.- ..+ ..++.+.+++-..++++...+
T Consensus 412 iGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 412 IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491 (580)
T ss_pred cCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 45554432 233332210 0 000000 000 011 122455677778899999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+ +.+|||.+.|+..-...|...+.+
T Consensus 492 ~l--vVLDEPNsNLD~~GE~AL~~Ai~~ 517 (580)
T COG4618 492 FL--VVLDEPNSNLDSEGEAALAAAILA 517 (580)
T ss_pred cE--EEecCCCCCcchhHHHHHHHHHHH
Confidence 88 899999999987777777776653
No 330
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.68 E-value=2.2e-16 Score=151.46 Aligned_cols=150 Identities=14% Similarity=0.083 Sum_probs=102.3
Q ss_pred ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026740 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (234)
Q Consensus 75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~ 153 (234)
..++++|+++.|+ +..+++++||++++||+++|+||||||||||+++|+|+++ |.+|+|.+++...-.....+..+..
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~~~~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-VYGGRLTKPAKGKLFYVPQRPYMTL 528 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEeecCCCcEEEECCCCCCCC
Confidence 4688999999994 5579999999999999999999999999999999999987 8899998875321100000000000
Q ss_pred hhHHHHHHH-------------HHHHHHHHHhcCce--------------EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 154 EDRVENIRR-------------IGEVAKLFADAGVI--------------CIACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 154 ~~~~~~~~~-------------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
....+++.. -..+...+...++. ....++.+.+++...++.++..+.+ +++
T Consensus 529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i--llL 606 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF--AIL 606 (659)
T ss_pred cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 000111100 00111111111110 0123456677788899999999999 899
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
|||++.++....+.+++.+++
T Consensus 607 DEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 607 DECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred eCCccCCCHHHHHHHHHHHHH
Confidence 999999999888889888876
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.68 E-value=4.7e-17 Score=166.93 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=60.3
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE-cCcccc
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL-DGDNCR 142 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~-~g~~v~ 142 (234)
.++++|+++.|++ .++++|+||++++|++++|+||||||||||+++|+|++. |++|+|++ +|.++.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD-PTEGDIIINDSHNLK 451 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc-CCCCeEEEeCCcchh
Confidence 5889999999975 369999999999999999999999999999999999998 99999999 567664
No 332
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.67 E-value=1.7e-17 Score=172.18 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=110.2
Q ss_pred cccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---ccc
Q 026740 74 STVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRD 148 (234)
Q Consensus 74 ~~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~ 148 (234)
...++++|+++.|+ ++.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++.... ...
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-PTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-CCceEEEECCEECcchHHHHhhc
Confidence 34789999999995 5789999999999999999999999999999999999998 99999999998874211 011
Q ss_pred CCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026740 149 LSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 149 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
+++.+++ ..+++... ..+...+...++.. ...++.+.++....+++++..+.+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV-- 1082 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV-- 1082 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence 1111111 11111110 01222333333321 233456667778889999999988
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++...+..+++.+++
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHH
Confidence 899999999999999988888765
No 333
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.67 E-value=1.3e-16 Score=148.46 Aligned_cols=145 Identities=20% Similarity=0.271 Sum_probs=101.6
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|+++ .+++++||++.+|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCC
Confidence 4688888874 46999999999999999999999999999999999988 89999999998764211 0112
Q ss_pred CCChhh-----------HHHHHHH------------------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHH
Q 026740 150 SFKAED-----------RVENIRR------------------IGEVAKLFADAGVI------CIACLISPYRKDRDACRS 194 (234)
Q Consensus 150 ~~~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 194 (234)
++.+++ ..+++.. ...+...+..+++. ....++.+.++....++.
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~a 409 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARG 409 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 222221 1111100 00122233333331 123345566777888999
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++..+.+ +++|||+..|+....+.+++.+++
T Consensus 410 l~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~ 440 (501)
T PRK10762 410 LMTRPKV--LILDEPTRGVDVGAKKEIYQLINQ 440 (501)
T ss_pred HhhCCCE--EEEcCCCCCCCHhHHHHHHHHHHH
Confidence 9999988 899999999988888887777764
No 334
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.67 E-value=2.4e-16 Score=131.27 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=86.2
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE-EcCcccccccccc--CCCChhhHHHHHHHH---
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDNCRHGLNRD--LSFKAEDRVENIRRI--- 163 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~-~~g~~v~~~~~~~--~~~~~~~~~~~~~~~--- 163 (234)
++++|+||++++|++++|+||||||||||+|+|+|+++ |++|+|. ++|..+....... ..++..+........
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence 36899999999999999999999999999999999988 8999997 8876542110000 011211111100000
Q ss_pred --HHHH-HHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 164 --GEVA-KLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 164 --~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
.... ......++ ..+..++.+.++....++.++..+.+ +++|||+..++....+.+++.+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~l--lllDEP~~~lD~~~~~~~~~~l~ 148 (213)
T PRK15177 80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRL--YIADGKLYTGDNATQLRMQAALA 148 (213)
T ss_pred CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCE--EEECCCCccCCHHHHHHHHHHHH
Confidence 0000 00010111 11223445566667889999999988 89999999997777777776553
No 335
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.67 E-value=4.9e-17 Score=167.73 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=106.0
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++|++++|.+ ..+|+|+||+|++||.++|+|+||||||||+++|.|++. |++|+|.+||.|+.... ...+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~-~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE-SAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc-CCCCeEEECCEEccccCHHHHHhcC
Confidence 5889999999964 469999999999999999999999999999999999998 99999999999986421 0111
Q ss_pred CCCh----------------------hhHHHHHHHHHHHHHHHHh--cCce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKA----------------------EDRVENIRRIGEVAKLFAD--AGVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~----------------------~~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.+ ++..+..+.. ........ .++- .+ ..++.+.++.-..+|+++....
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a-~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1441 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELA-HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK 1441 (1522)
T ss_pred eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHc-CcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 1111 1111111110 00011111 1111 11 2245567788889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+.+.+++
T Consensus 1442 I--LiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1442 I--LVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred E--EEEECCcccCCHHHHHHHHHHHHH
Confidence 8 899999999988888888877765
No 336
>PTZ00243 ABC transporter; Provisional
Probab=99.67 E-value=4.3e-17 Score=168.15 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=103.6
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
-++++|++++|.+ ..+|+|+||+|++||.++|+|+||||||||+++|.|++. |.+|+|++||.|+.... ...+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-VCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccCCHHHHHhcc
Confidence 5889999999964 359999999999999999999999999999999999998 99999999999986421 1111
Q ss_pred CCChhh-------HHHHHHHH-----HHHHHHHHhc-----------Cce-EE----EecCcccHHHHHHHHHhCCC-CC
Q 026740 150 SFKAED-------RVENIRRI-----GEVAKLFADA-----------GVI-CI----ACLISPYRKDRDACRSMLPE-GD 200 (234)
Q Consensus 150 ~~~~~~-------~~~~~~~~-----~~~~~~~~~~-----------~~~-~~----~~~~~~~~~~~~~~~~ll~~-~~ 200 (234)
++.+++ .++++... ..+-...... ++- .+ ..++.+.++.-..+|+++.+ ..
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 111111 01111000 0000001100 110 11 22455667778899999985 78
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+.+.+++
T Consensus 1467 I--LlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1467 F--ILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 8 899999999988888877777664
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=99.66 E-value=6e-16 Score=146.47 Aligned_cols=148 Identities=15% Similarity=0.081 Sum_probs=102.9
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc----C
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----L 149 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~----~ 149 (234)
.++++++|+++.|++. .++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++ ..+.. .... .
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~-~~i~y-~~Q~~~~~~ 413 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-PDEGEVDPE-LKISY-KPQYIKPDY 413 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEe-eeEEE-ecccccCCC
Confidence 3578999999999875 4899999999999999999999999999999999998 899999875 22210 0000 0
Q ss_pred CCChhhHHHHH-HH---HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhh
Q 026740 150 SFKAEDRVENI-RR---IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (234)
Q Consensus 150 ~~~~~~~~~~~-~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~ 220 (234)
..+..+..... .. -.....++..+++. ....++.+.++....++.++..+.+ +++|||+..|+......
T Consensus 414 ~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l--lLLDEPt~~LD~~~~~~ 491 (590)
T PRK13409 414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL--YLLDEPSAHLDVEQRLA 491 (590)
T ss_pred CCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHH
Confidence 11111111000 00 00111222233321 2234566677788899999999998 89999999999888888
Q ss_pred HHHHHHc
Q 026740 221 LYKLARE 227 (234)
Q Consensus 221 l~~~~~~ 227 (234)
+++.+++
T Consensus 492 l~~~l~~ 498 (590)
T PRK13409 492 VAKAIRR 498 (590)
T ss_pred HHHHHHH
Confidence 8887764
No 338
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=6.5e-16 Score=131.47 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=88.4
Q ss_pred cccccceeeec-----CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc---cCCCChhhHHHHH-
Q 026740 90 DKRDRQQLLQQ-----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR---DLSFKAEDRVENI- 160 (234)
Q Consensus 90 ~~l~~vs~~i~-----~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~---~~~~~~~~~~~~~- 160 (234)
..+.++++++. +|++++|+||||||||||+++|+|+++ |.+|+|.++|..+...... ....+..+.....
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCceEEEecccccCCCCCCHHHHHHHHh
Confidence 45666777665 799999999999999999999999988 8999999998654311100 0111222211100
Q ss_pred HHH----HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 161 RRI----GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 161 ~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
... .....++...++. ....++.+.++....++.++..+.+ +++|||+..|+......+++.+++
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~ 160 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADI--YLLDEPSAYLDVEQRLMASKVIRR 160 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 000 0011122222221 1123455667777899999999988 899999999988888877776654
No 339
>PLN03073 ABC transporter F family; Provisional
Probab=99.66 E-value=7.5e-16 Score=148.57 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=102.7
Q ss_pred ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc--CCC
Q 026740 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD--LSF 151 (234)
Q Consensus 75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~--~~~ 151 (234)
++++++|+++.|+ ...+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.+++..-....... ..+
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-p~~G~I~~~~~~~igyv~Q~~~~~l 585 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-PSSGTVFRSAKVRMAVFSQHHVDGL 585 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCceEEECCceeEEEEeccccccC
Confidence 5789999999996 4569999999999999999999999999999999999998 99999998763200000000 001
Q ss_pred Chhh--HHHHHHH-----HHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 152 KAED--RVENIRR-----IGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 152 ~~~~--~~~~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
.... ....... -..+...+..+++. ....++.+.++....++.++..+.+ +++|||+..|+....
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~l--LLLDEPT~~LD~~s~ 663 (718)
T PLN03073 586 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI--LLLDEPSNHLDLDAV 663 (718)
T ss_pred CcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHH
Confidence 0000 0000000 00122223333321 2234456667777889999999998 899999999988887
Q ss_pred hhHHHHHHc
Q 026740 219 KGLYKLARE 227 (234)
Q Consensus 219 ~~l~~~~~~ 227 (234)
..+.+.+.+
T Consensus 664 ~~l~~~L~~ 672 (718)
T PLN03073 664 EALIQGLVL 672 (718)
T ss_pred HHHHHHHHH
Confidence 777777664
No 340
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.66 E-value=1.8e-15 Score=124.55 Aligned_cols=137 Identities=61% Similarity=1.005 Sum_probs=110.2
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV 175 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (234)
.-..++|.+++|+|+||||||||++.|++.+...+.|.+.++|++++......+++.++++.++++++..++..+...+.
T Consensus 18 ~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~ 97 (198)
T PRK03846 18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGL 97 (198)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCC
Confidence 34458999999999999999999999999876345678999999887544344567788887777777666766666777
Q ss_pred eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026740 176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232 (234)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~ 232 (234)
..+..+..+.++.++.+++++...++..++++.|.+.+..|+++.+|+..+.+++.+
T Consensus 98 ~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~ 154 (198)
T PRK03846 98 VVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRN 154 (198)
T ss_pred EEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccC
Confidence 777777777788889999999887776789999999999999888988776665544
No 341
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.66 E-value=4.6e-16 Score=145.22 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=102.1
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|++. .+++++||++++|++++|+||||||||||+|+|+|+++ |.+|+|.++|+++.... ...+
T Consensus 267 ~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 267 PVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-ARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred ceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEECCCCCHHHHHhCCc
Confidence 4788899884 26999999999999999999999999999999999988 89999999998764210 0112
Q ss_pred CCChhhH-----------HHHHHH--------------H-HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCC
Q 026740 150 SFKAEDR-----------VENIRR--------------I-GEVAKLFADAGVI------CIACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 150 ~~~~~~~-----------~~~~~~--------------~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~ 197 (234)
++.+++. .+++.. . ..+...+..+++. ....++.+.++....++.++.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~ 420 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA 420 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence 2222210 011100 0 0111222233321 123445667777888999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||+..|+....+.+++.+++
T Consensus 421 ~p~l--LlLDEPt~gLD~~~~~~l~~~l~~ 448 (510)
T PRK15439 421 SPQL--LIVDEPTRGVDVSARNDIYQLIRS 448 (510)
T ss_pred CCCE--EEECCCCcCcChhHHHHHHHHHHH
Confidence 9988 899999999999888888887764
No 342
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.8e-16 Score=145.41 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=100.2
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~ 150 (234)
+++++|++.. .+++++||++++|++++|+||||||||||+|+|+|+++ |.+|+|+++|+++.... ...++
T Consensus 257 ~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-RTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-CCCceEEECCEECCCCCHHHHHhCCCE
Confidence 5778888732 58999999999999999999999999999999999998 89999999998764210 00111
Q ss_pred CChhh-----------HHHHHH-----------------H-HHHHHHHHHhcCc------eEEEecCcccHHHHHHHHHh
Q 026740 151 FKAED-----------RVENIR-----------------R-IGEVAKLFADAGV------ICIACLISPYRKDRDACRSM 195 (234)
Q Consensus 151 ~~~~~-----------~~~~~~-----------------~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l 195 (234)
+.+++ ..+++. . -..+...+..+++ .....++.+.+++...++.+
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al 411 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL 411 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH
Confidence 11111 001100 0 0011222222332 12234566677788889999
Q ss_pred CCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+..+.+ +++|||+..++......+++.++
T Consensus 412 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~ 440 (501)
T PRK11288 412 SEDMKV--ILLDEPTRGIDVGAKHEIYNVIY 440 (501)
T ss_pred ccCCCE--EEEcCCCCCCCHhHHHHHHHHHH
Confidence 999998 89999999998888888887763
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=99.66 E-value=5.9e-16 Score=149.27 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=100.2
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCccccccccccCCC
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHGLNRDLSF 151 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~~~~~~~~ 151 (234)
...++++|+++.|++..+++|+||+|.+|++++|+|+||||||||+|+|+|.. ..|.+|+|.+.++++... . .
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~-~----~ 249 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD-D----T 249 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC-C----C
Confidence 34789999999999889999999999999999999999999999999999864 127789997655543210 0 0
Q ss_pred Ch--------hhHH----HHHHHHH--------------------------------HH----------------HHHHH
Q 026740 152 KA--------EDRV----ENIRRIG--------------------------------EV----------------AKLFA 171 (234)
Q Consensus 152 ~~--------~~~~----~~~~~~~--------------------------------~~----------------~~~~~ 171 (234)
+. .++. +..+.+. .+ ..++.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 00 0000 0000000 00 00111
Q ss_pred hcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 172 DAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 172 ~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..++ .....++.+.++...+++.++..+.+ +++|||+..|+......+++.+++
T Consensus 330 ~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~L~~ 389 (718)
T PLN03073 330 GLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDL--LLLDEPTNHLDLHAVLWLETYLLK 389 (718)
T ss_pred HCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence 1111 11223445566677888999999998 899999999988888888887765
No 344
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.65 E-value=2.9e-16 Score=121.22 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=78.1
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCCChhh--------HHHH
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFKAED--------RVEN 159 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~~~~~--------~~~~ 159 (234)
|+++||++++|++++|+|+||||||||+++|+|++. |.+|.|.++|.++.... ...+++.+++ ..+.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999998 89999999999886410 0011111111 0111
Q ss_pred HHHHHHHHHHHHhcCc-----eEE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026740 160 IRRIGEVAKLFADAGV-----ICI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211 (234)
Q Consensus 160 ~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~ 211 (234)
..-..+..++..... ..+ ..++.+.++....+++++..+.+ +++|+|++
T Consensus 80 -~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l--lllDEPt~ 137 (137)
T PF00005_consen 80 -ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL--LLLDEPTN 137 (137)
T ss_dssp -HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE--EEEESTTT
T ss_pred -cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE--EEEeCCCC
Confidence 000012222222221 111 33455667777889999999998 89999974
No 345
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=142.16 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=99.0
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc-cccccccccCCCCh-
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRDLSFKA- 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~-~v~~~~~~~~~~~~- 153 (234)
+++++|+++.|+++++++++||++.+|+.+||||+||||||||+|+|+|.+. |++|+|...+. .+. .+.++.....
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-~~~G~i~~~~~~~v~-~l~Q~~~~~~~ 80 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-PDSGEVTRPKGLRVG-YLSQEPPLDPE 80 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-CCCCeEeecCCceEE-EeCCCCCcCCC
Confidence 6788999999999999999999999999999999999999999999999998 99999988753 221 1111100110
Q ss_pred -----------hhHHHHHHHH-------------------------------HHHHHHHHhcCce----EEEecCcccHH
Q 026740 154 -----------EDRVENIRRI-------------------------------GEVAKLFADAGVI----CIACLISPYRK 187 (234)
Q Consensus 154 -----------~~~~~~~~~~-------------------------------~~~~~~~~~~~~~----~~~~~~~~~~~ 187 (234)
.+..+..+.. ..+..++...+.. .+..++.+.+.
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~ 160 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR 160 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence 0000000000 0112222222221 22444566677
Q ss_pred HHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 188 ~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
+...++.++..+++ +++|||++.|+.....=|-.-+
T Consensus 161 Rv~LA~aL~~~pDl--LLLDEPTNHLD~~~i~WLe~~L 196 (530)
T COG0488 161 RVALARALLEEPDL--LLLDEPTNHLDLESIEWLEDYL 196 (530)
T ss_pred HHHHHHHHhcCCCE--EEEcCCCcccCHHHHHHHHHHH
Confidence 77889999999999 8999999999665554444433
No 346
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.4e-15 Score=120.67 Aligned_cols=145 Identities=18% Similarity=0.166 Sum_probs=91.0
Q ss_pred cceeeceeeec-----CC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc
Q 026740 76 VAKSTNILWHK-----NS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148 (234)
Q Consensus 76 ~~~~~~l~~~~-----~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~ 148 (234)
.+.++|+++.| ++ .++++++||+++.||++++-||||||||||+|+|.+-+. |++|+|.+.-+.-+-.+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl--- 79 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDL--- 79 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhh---
Confidence 35566666655 22 368999999999999999999999999999999999998 99999988643321100
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCceEE-------------------------------------------EecCccc
Q 026740 149 LSFKAEDRVENIRRIGEVAKLFADAGVICI-------------------------------------------ACLISPY 185 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~ 185 (234)
....+.+..+.++. .++++.|-..+.+- ..|+.+.
T Consensus 80 ~~a~pr~vl~vRr~--TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 80 VTAEPREVLEVRRT--TIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred hccChHHHHHHHHh--hhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 01233332222221 22222222221111 1122233
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcC
Q 026740 186 RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG 228 (234)
Q Consensus 186 ~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~ 228 (234)
+++..+++..+....+ +++|+|+..|+..++.-..+.+++-
T Consensus 158 qQRVNIaRgfivd~pI--LLLDEPTasLDa~Nr~vVveli~e~ 198 (235)
T COG4778 158 QQRVNIARGFIVDYPI--LLLDEPTASLDATNRAVVVELIREA 198 (235)
T ss_pred heehhhhhhhhccCce--EEecCCcccccccchHHHHHHHHHH
Confidence 3333444554444444 7899999999999988777777653
No 347
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=4.9e-16 Score=152.95 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=103.8
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCC
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK 152 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~ 152 (234)
-++++|++|.|+. +++++|+||++++|+.++|+|||||||||.+.+|.+++. |..|.|.+||+|+++ ++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd-p~~G~V~IDg~dik~-------ln 1058 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD-PDAGKVKIDGVDIKD-------LN 1058 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCccccc-------CC
Confidence 4789999999974 569999999999999999999999999999999999999 999999999999975 33
Q ss_pred hhhHHHHHHHHHHHHHHHH----------------------------------hcC-c-eEE----EecCcccHHHHHHH
Q 026740 153 AEDRVENIRRIGEVAKLFA----------------------------------DAG-V-ICI----ACLISPYRKDRDAC 192 (234)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~-~-~~~----~~~~~~~~~~~~~~ 192 (234)
...+++++..+.|...+|. -+. . ..+ ..++.+.+++-++|
T Consensus 1059 l~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1059 LKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence 3322221111111111110 000 0 001 12345677888999
Q ss_pred HHhCCCCCceEEEEeCChhhhhhcch---hhHHHHHHcC
Q 026740 193 RSMLPEGDFIEVFMDVPLQVCEARDP---KGLYKLAREG 228 (234)
Q Consensus 193 ~~ll~~~~l~~~~ld~P~~~l~~R~~---~~l~~~~~~~ 228 (234)
|+++..+.+ +++||.++.|+.... +.-.+++++|
T Consensus 1139 RAilRnPkI--LLLDEATSALDseSErvVQeALd~a~~g 1175 (1228)
T KOG0055|consen 1139 RAILRNPKI--LLLDEATSALDSESERVVQEALDRAMEG 1175 (1228)
T ss_pred HHHHcCCCe--eeeeccchhhhhhhHHHHHHHHHHhhcC
Confidence 999999999 899999999976554 4455555655
No 348
>PRK13409 putative ATPase RIL; Provisional
Probab=99.63 E-value=6.7e-16 Score=146.17 Aligned_cols=144 Identities=21% Similarity=0.236 Sum_probs=100.6
Q ss_pred eceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE-----------EcCccccccc--
Q 026740 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHGL-- 145 (234)
Q Consensus 80 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~-----------~~g~~v~~~~-- 145 (234)
++++++||.. .+|++++ .+++|++++|+||||||||||+|+|+|++. |++|+|. ++|.++....
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 3588999864 5999999 899999999999999999999999999998 9999997 8888764210
Q ss_pred ----cccCCCChh-----------hHHHHHHH---HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026740 146 ----NRDLSFKAE-----------DRVENIRR---IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 146 ----~~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
...+++.++ ...+.+.. ...+..++...++. .+..++.+.++....++.++..+.+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~l- 233 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF- 233 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 000111111 00111110 01122233333332 1233456677778899999999998
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||++.|+......+++.+++
T Consensus 234 -llLDEPts~LD~~~~~~l~~~i~~ 257 (590)
T PRK13409 234 -YFFDEPTSYLDIRQRLNVARLIRE 257 (590)
T ss_pred -EEEECCCCCCCHHHHHHHHHHHHH
Confidence 899999999988888888887764
No 349
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.1e-15 Score=134.90 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=62.0
Q ss_pred cceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026740 76 VAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (234)
Q Consensus 76 ~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~ 143 (234)
.++.+|+.+.|..+ --+..||++|++||++.|+|.|||||||+++.|.|++. |++|+|++||..+..
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~ 389 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSA 389 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCC
Confidence 57889999999766 56889999999999999999999999999999999998 999999999999863
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.63 E-value=7.7e-16 Score=124.67 Aligned_cols=120 Identities=19% Similarity=0.210 Sum_probs=84.0
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHH
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA 167 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (234)
.+.+++++||++++|++++|+||||||||||+|++.+ .+|++.+++..... ....+.+..+ .
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~-~~~~~~~~~q--~---------- 68 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKF-SRNKLIFIDQ--L---------- 68 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccccc-ccccEEEEhH--H----------
Confidence 4578999999999999999999999999999999842 47899988763211 0111122222 0
Q ss_pred HHHHhcCce------EEEecCcccHHHHHHHHHhCCC--CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 168 KLFADAGVI------CIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 168 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~--~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..+..+++. ....++.+.++....+++++.. +.+ +++|||+..++....+.+++.+++
T Consensus 69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~l--lLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTL--FILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 112222221 1123345566777888999999 888 899999999998888888877664
No 351
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=2.8e-15 Score=125.04 Aligned_cols=54 Identities=20% Similarity=0.130 Sum_probs=50.3
Q ss_pred CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
....+|+|+||++++||.++|+|+||||||||+|+|+|.++ |++|+|.++|+-.
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-Pt~G~v~v~G~v~ 91 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVA 91 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-CCCceEEEcceEe
Confidence 45679999999999999999999999999999999999998 9999999999753
No 352
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.62 E-value=1.2e-15 Score=134.96 Aligned_cols=139 Identities=18% Similarity=0.236 Sum_probs=98.0
Q ss_pred CcccceeeceeeecC-----------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 73 NSTVAKSTNILWHKN-----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 73 ~~~~~~~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
..++++++++...|. ...+++++||++++||.++|+|.||||||||-++|.+++. +.|+|+|+|+++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~--s~G~I~F~G~~i 350 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP--SQGEIRFDGQDI 350 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC--cCceEEECCccc
Confidence 356788888887662 2468999999999999999999999999999999999986 459999999998
Q ss_pred cccccccCCCChhhHHHHHHHHHHHHHHHHhc-----------------------------------------CceEE--
Q 026740 142 RHGLNRDLSFKAEDRVENIRRIGEVAKLFADA-----------------------------------------GVICI-- 178 (234)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~-- 178 (234)
.. ++.++.+..++ ++..+||++ ++-+.
T Consensus 351 ~~-------~~~~~mrplR~---~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r 420 (534)
T COG4172 351 DG-------LSRKEMRPLRR---RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR 420 (534)
T ss_pred cc-------cChhhhhhhhh---hceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh
Confidence 73 33333332222 122223322 11111
Q ss_pred ----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 179 ----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 179 ----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
-.|+.+.+++-.++++++-.+.+ +++|||++.|+..-.....+.+
T Consensus 421 ~RYPhEFSGGQRQRIAIARAliLkP~~--i~LDEPTSALD~SVQaQvv~LL 469 (534)
T COG4172 421 NRYPHEFSGGQRQRIAIARALILKPEL--ILLDEPTSALDRSVQAQVLDLL 469 (534)
T ss_pred hcCCcccCcchhhHHHHHHHHhcCCcE--EEecCCchHhhHHHHHHHHHHH
Confidence 12345566677788888877877 8999999999766555544443
No 353
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.62 E-value=1.1e-14 Score=114.92 Aligned_cols=130 Identities=68% Similarity=1.125 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEEEecCc
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (234)
+++|+|++||||||+++.|++.+..+....+.++++.++..+....++.++++.+.++.+......+...+...+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~ 80 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS 80 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 47899999999999999999988633445688898888754433445666666666655444444454556666666655
Q ss_pred ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
..+..|..++++++...+..++++.|.+.|.+|+++++|++.+.|.++++
T Consensus 81 ~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~ 130 (149)
T cd02027 81 PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGF 130 (149)
T ss_pred CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCc
Confidence 56667777888877667777999999999999999999999999998876
No 354
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.62 E-value=7.8e-16 Score=136.16 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=99.4
Q ss_pred cccceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC----CccEEEEcCccccccc
Q 026740 74 STVAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHGL 145 (234)
Q Consensus 74 ~~~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p----~~G~i~~~g~~v~~~~ 145 (234)
.++++++|++..|. .+.+++++||++.+||.++|+|+||||||-.+..++++++.+ .+|+|.|+|+++-.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~-- 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA-- 81 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc--
Confidence 35889999999996 678999999999999999999999999999999999999742 36899999999863
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHHhcCceEE-----------------------------------------------
Q 026740 146 NRDLSFKAEDRVENIRRIGEVAKLFADAGVICI----------------------------------------------- 178 (234)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 178 (234)
.+.++++..++. .++++||.+....+
T Consensus 82 -----~se~~lr~iRG~--~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 82 -----ASERQLRGVRGN--KIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred -----CCHHHHhhhccc--ceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 444444333322 34444443321100
Q ss_pred -EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 179 -ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 179 -~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
-.++.+.+++.-++.+++.++++ ++-|||+..|+---...+.+.++
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~l--LIADEPTTALDVtvQaQIL~Ll~ 201 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDL--LIADEPTTALDVTVQAQILDLLK 201 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCe--EeecCCcchhhhhhHHHHHHHHH
Confidence 00123334444566777777787 78899999886655555555443
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.62 E-value=7.2e-16 Score=158.85 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=103.8
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~ 149 (234)
.++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|++. .+|+|++||.|+.... ...+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhce
Confidence 5889999999963 679999999999999999999999999999999999885 5899999999986421 0111
Q ss_pred CCChh----------------------hHHHHHHHHHHHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAE----------------------DRVENIRRIGEVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.++ +..+....+ ......... ++- .+ ..++.+.++....+|+++....
T Consensus 1295 s~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~-~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEV-GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred EEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHC-CCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC
Confidence 11111 111111110 000111111 111 11 1245567778889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+.+.+++
T Consensus 1374 I--LlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1374 I--LLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 8 899999999988888888887775
No 356
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.62 E-value=1.2e-14 Score=118.21 Aligned_cols=140 Identities=63% Similarity=1.077 Sum_probs=112.3
Q ss_pred ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHh
Q 026740 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFAD 172 (234)
Q Consensus 93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (234)
+..+...++|++++|+|++||||||+++.|.+.+..+..+.+.+++++++..+....++..+++..+++.+..+...+..
T Consensus 9 ~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (184)
T TIGR00455 9 ERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVR 88 (184)
T ss_pred HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 33445678999999999999999999999999886333457899999987655455567778887777777667777777
Q ss_pred cCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026740 173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232 (234)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~ 232 (234)
.+..++.....+.+..++.+++++....+..++++.|.+.+..|+.+.+|+..+.+.++.
T Consensus 89 ~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~ 148 (184)
T TIGR00455 89 NGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKG 148 (184)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccC
Confidence 787777777777788888999888877777789999999999999999998877666554
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.61 E-value=2.8e-15 Score=153.55 Aligned_cols=150 Identities=16% Similarity=0.204 Sum_probs=103.8
Q ss_pred cceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCccccccccccC
Q 026740 76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHGLNRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~~~~~~ 149 (234)
+++.+|+++.|+ .+.+|+|+|+++++|++++|+||||||||||+++|+|+++. +++|+|.++|+++.......+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 468899999884 46799999999999999999999999999999999998752 467999999988742211112
Q ss_pred CCChhh--------HHHHHHHH---------------HHHHHHHHhcCceE-----EE----ecCcccHHHHHHHHHhCC
Q 026740 150 SFKAED--------RVENIRRI---------------GEVAKLFADAGVIC-----IA----CLISPYRKDRDACRSMLP 197 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~~---------------~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~ll~ 197 (234)
++.+++ .++.+... ..+..++...++.. +. .++.+.+++..++++++.
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~ 918 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA 918 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc
Confidence 222211 11111110 01222233223211 11 245566777788999999
Q ss_pred CCC-ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGD-FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+. + +++|||++.|+......+.+.+++
T Consensus 919 ~P~~i--LlLDEPTsgLD~~~~~~i~~~L~~ 947 (1394)
T TIGR00956 919 KPKLL--LFLDEPTSGLDSQTAWSICKLMRK 947 (1394)
T ss_pred CCCeE--EEEcCCCCCCCHHHHHHHHHHHHH
Confidence 986 7 799999999988888777776654
No 358
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.59 E-value=6.9e-15 Score=123.24 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=85.7
Q ss_pred eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh----------hHHHHHH-----
Q 026740 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE----------DRVENIR----- 161 (234)
Q Consensus 97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~----------~~~~~~~----- 161 (234)
|++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ..+++.++ ...+++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~-~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPGKGW-RHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccchHhh-CcEEEecccccccCCCCccHHHHHHhcccc
Confidence 5789999999999999999999999999988 89999999998752110 00111111 0111100
Q ss_pred -----------HHHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 162 -----------RIGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 162 -----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
....+...+...++.. ...++.+.++....++.++..+.+ +++|+|+..++....+.+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lilDEP~~~LD~~~~~~l~~~l 156 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSV--LLLDEPFTGLDMPTQELLTELF 156 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 0001222233333221 123455566777889999999998 8999999999988888888877
Q ss_pred Hc
Q 026740 226 RE 227 (234)
Q Consensus 226 ~~ 227 (234)
++
T Consensus 157 ~~ 158 (223)
T TIGR03771 157 IE 158 (223)
T ss_pred HH
Confidence 64
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.58 E-value=9.7e-15 Score=135.96 Aligned_cols=149 Identities=16% Similarity=0.115 Sum_probs=100.0
Q ss_pred cccceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc-cccccC-C
Q 026740 74 STVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDL-S 150 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~-~~~~~~-~ 150 (234)
..+++++|+++.|++ +.+++++||.|.+|+.++|+||||+|||||+|+|+|.+. |.+|+|.+.-. +.- ...++. .
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~~-v~igyf~Q~~~~ 396 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGET-VKIGYFDQHRDE 396 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCCc-eEEEEEEehhhh
Confidence 458999999999965 689999999999999999999999999999999999888 88999887532 211 000000 0
Q ss_pred C-ChhhHHHHHHHH------HHHHHHHHhcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026740 151 F-KAEDRVENIRRI------GEVAKLFADAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217 (234)
Q Consensus 151 ~-~~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~ 217 (234)
+ ......++++.. ..+...+..++. ..+..++.+.+.+...+.-++..+++ +++|||++.|+--.
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv--LiLDEPTNhLDi~s 474 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL--LLLDEPTNHLDIES 474 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE--EEEcCCCccCCHHH
Confidence 0 000111111110 112222222222 23344555666666677778888999 89999999997666
Q ss_pred hhhHHHHHH
Q 026740 218 PKGLYKLAR 226 (234)
Q Consensus 218 ~~~l~~~~~ 226 (234)
...|-+.+.
T Consensus 475 ~~aLe~aL~ 483 (530)
T COG0488 475 LEALEEALL 483 (530)
T ss_pred HHHHHHHHH
Confidence 666666665
No 360
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.9e-15 Score=129.98 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=108.3
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----ccccCC
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~~~~~~ 150 (234)
.+...|+++.|+ .+++++++||+++.|+.++++|+||+||||+++.|.+++. +.+|.|.+||+|++.. +...++
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-VNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-CcCceEEEcchhHHHhHHHHHHHHhC
Confidence 466789999996 5689999999999999999999999999999999999999 9999999999998742 111234
Q ss_pred CChhhHH-------------------HHHH---HHHHHHHHHHhcC------ceE-EEecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAEDRV-------------------ENIR---RIGEVAKLFADAG------VIC-IACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~~~~-------------------~~~~---~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.|++-. +... ...++...++... +-+ -...+.+.+++..+++.+|+.+.+
T Consensus 341 ~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~i 420 (497)
T COG5265 341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI 420 (497)
T ss_pred cCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCE
Confidence 4443321 0000 0112222222211 111 122355677888999999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++||.++.|+-+..+.+...+++
T Consensus 421 --l~~deatsaldt~te~~iq~~l~~ 444 (497)
T COG5265 421 --LILDEATSALDTHTEQAIQAALRE 444 (497)
T ss_pred --EEEehhhhHhhhhHHHHHHHHHHH
Confidence 899999999998888887777664
No 361
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=8.1e-15 Score=124.38 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=87.8
Q ss_pred eeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHH
Q 026740 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR 161 (234)
Q Consensus 82 l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~ 161 (234)
+.+++|+.. -+++|+.+...+++|.|+||||||||+++|+|+++ |+.|.|.++|+-+..... .+..+++.|
T Consensus 6 ~~~~lG~~~--l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-PdeG~I~lngr~L~Ds~k-~i~lp~~~R----- 76 (352)
T COG4148 6 FRQRLGNFA--LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR-PDEGRIELNGRVLVDAEK-GIFLPPEKR----- 76 (352)
T ss_pred hhhhcCceE--EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC-ccccEEEECCEEeecccC-CcccChhhh-----
Confidence 334444432 36788888878999999999999999999999998 999999999987653111 111222222
Q ss_pred HHHHHHHHHHhcCceEEEe------------------------------------cCcccHHHHHHHHHhCCCCCceEEE
Q 026740 162 RIGEVAKLFADAGVICIAC------------------------------------LISPYRKDRDACRSMLPEGDFIEVF 205 (234)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~ll~~~~l~~~~ 205 (234)
.++++||+..+++... ++.+.+++..+.++++..+++ ++
T Consensus 77 ---riGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~L--LL 151 (352)
T COG4148 77 ---RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPEL--LL 151 (352)
T ss_pred ---eeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCe--ee
Confidence 4556666655543311 123455667888999999999 89
Q ss_pred EeCChhhhhhcchhh
Q 026740 206 MDVPLQVCEARDPKG 220 (234)
Q Consensus 206 ld~P~~~l~~R~~~~ 220 (234)
+|||...|+.-...+
T Consensus 152 mDEPLaSLD~~RK~E 166 (352)
T COG4148 152 MDEPLASLDLPRKRE 166 (352)
T ss_pred ecCchhhcccchhhH
Confidence 999999996544333
No 362
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.54 E-value=2e-14 Score=136.99 Aligned_cols=138 Identities=18% Similarity=0.216 Sum_probs=95.9
Q ss_pred CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCcccccc-ccccCCCChhh-------
Q 026740 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG-LNRDLSFKAED------- 155 (234)
Q Consensus 87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~-~~~~~~~~~~~------- 155 (234)
+++.+++|+|+++++||+++|+||||||||||+++|+|... ++ +|+|.++|.++... ....+++.+++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~-~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP-KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 35779999999999999999999999999999999999876 54 79999999876411 00011111111
Q ss_pred -HHHHHH---------------HHHHHHHHHHhcCce-----EEE------ecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 156 -RVENIR---------------RIGEVAKLFADAGVI-----CIA------CLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 156 -~~~~~~---------------~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
.++++. ....+..++...++. .+. .++.+.+++...+++++..+.+ +++|+
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v--lllDE 192 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL--LFCDE 192 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE--EEeeC
Confidence 011110 011233344443331 111 2455667778899999999998 89999
Q ss_pred ChhhhhhcchhhHHHHHHc
Q 026740 209 PLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~~ 227 (234)
|+..|+......+++.+++
T Consensus 193 PtsgLD~~~~~~l~~~L~~ 211 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKG 211 (617)
T ss_pred CCcchhHHHHHHHHHHHHH
Confidence 9999999998888877765
No 363
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.54 E-value=1.9e-14 Score=148.78 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=102.2
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc--ccccc---cc-
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN--CRHGL---NR- 147 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~--v~~~~---~~- 147 (234)
.++++|+++.|++ .++++|+||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.- +.... +.
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g~i~yv~Q~~~l~~~T 714 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKGSVAYVPQQAWIQNDS 714 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-cCCcEEEECCEEEEEcCCccccCCc
Confidence 5889999999974 579999999999999999999999999999999999998 899999998731 00000 00
Q ss_pred -----cCCCChhhHHHHHHHHHHHHHHHHhcCce------EE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026740 148 -----DLSFKAEDRVENIRRIGEVAKLFADAGVI------CI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212 (234)
Q Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~ 212 (234)
.++.... . +.+..+........+.... .+ ..++.+.+++...+|+++...++ +++|+|++.
T Consensus 715 i~eNI~~g~~~~-~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i--llLDEp~sa 790 (1522)
T TIGR00957 715 LRENILFGKALN-E-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSA 790 (1522)
T ss_pred HHHHhhcCCccC-H-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence 0111000 0 1111111111111111111 11 23456677888999999999998 899999999
Q ss_pred hhhcchhhHHHHHH
Q 026740 213 CEARDPKGLYKLAR 226 (234)
Q Consensus 213 l~~R~~~~l~~~~~ 226 (234)
++....+.+++.+.
T Consensus 791 LD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 791 VDAHVGKHIFEHVI 804 (1522)
T ss_pred cCHHHHHHHHHHHh
Confidence 99988888888775
No 364
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.53 E-value=2.1e-14 Score=141.59 Aligned_cols=150 Identities=12% Similarity=0.182 Sum_probs=111.1
Q ss_pred ccceeeceeeecCCcc-ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----cc
Q 026740 75 TVAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~-~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-----~~ 148 (234)
..+..+++++.|+... +++++|+.|++||+.++.|+|||||||++++|.|... |++|++++.|.++....+ ..
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-PTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc-CCcceEEEecCccccccchhhhhhh
Confidence 5677899999998877 9999999999999999999999999999999999988 999999999999875322 22
Q ss_pred CCCChhhHH--------HHHHHHHH------------HHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceE
Q 026740 149 LSFKAEDRV--------ENIRRIGE------------VAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 149 ~~~~~~~~~--------~~~~~~~~------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
+|+-|+.-. +++...+. +.......++ .....++.+.++....+.+++..+.+
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v-- 719 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV-- 719 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE--
Confidence 566666421 22211111 1111222222 22233455566666778888888888
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++...+..+|..+.+
T Consensus 720 i~LDEPstGmDP~arr~lW~ii~~ 743 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHLWDIIAR 743 (885)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999888888887653
No 365
>PLN03130 ABC transporter C family member; Provisional
Probab=99.52 E-value=4.2e-14 Score=146.57 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=100.2
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc-cEEEEcCccc--cccc---c
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNC--RHGL---N 146 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~-G~i~~~g~~v--~~~~---~ 146 (234)
.++++|+++.|+. .++++|+||++++|+.++|+||||||||||+++|+|.++ |.+ |+|.+.+.-- .+.. +
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP-PRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc-cCCCceEEEcCeEEEEcCccccCC
Confidence 5889999999964 568999999999999999999999999999999999998 888 8998765310 0000 0
Q ss_pred c------cCCCChhhHHHHHHHHHHHHHHHHhcC------ceEE----EecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 147 R------DLSFKAEDRVENIRRIGEVAKLFADAG------VICI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 147 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
. .++.. .+ .+.+..+.+...+..+.. ...+ ..++.+.+++...||+++...++ +++|+|+
T Consensus 693 gTIreNI~fg~~-~d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I--lLLDEpt 768 (1622)
T PLN03130 693 ATVRDNILFGSP-FD-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV--YIFDDPL 768 (1622)
T ss_pred CCHHHHHhCCCc-cc-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE--EEECCCc
Confidence 0 01111 11 111222222221111111 1112 23456778888999999999998 8999999
Q ss_pred hhhhhcchhhHHHHHHc
Q 026740 211 QVCEARDPKGLYKLARE 227 (234)
Q Consensus 211 ~~l~~R~~~~l~~~~~~ 227 (234)
+.++....+.+++....
T Consensus 769 SALD~~~~~~I~~~~l~ 785 (1622)
T PLN03130 769 SALDAHVGRQVFDKCIK 785 (1622)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 99988777777765443
No 366
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.52 E-value=3.1e-13 Score=108.95 Aligned_cols=131 Identities=50% Similarity=0.857 Sum_probs=94.2
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI 178 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (234)
++|++++|+|++||||||+++.|++.+. +..+ .++++++.++......+++..+++..+.+.+..+...+...+...+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~-~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi 80 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR-EAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVL 80 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEE
Confidence 6899999999999999999999999887 4444 4568887765433333456666676666666556655555555555
Q ss_pred EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 179 ~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
.....+....++.++++.. .+..++++.|.+.+.+|+.+.+|+..+.+++..+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~ 133 (175)
T PRK00889 81 VSAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHF 133 (175)
T ss_pred EecCCCCHHHHHHHHhhcC--CeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCC
Confidence 4444455666666766654 3456899999999999998889988877766654
No 367
>PLN03232 ABC transporter C family member; Provisional
Probab=99.51 E-value=3.1e-14 Score=146.96 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=98.4
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE-EEcC------cccc--c
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-ILDG------DNCR--H 143 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i-~~~g------~~v~--~ 143 (234)
.++++|+++.|+. .++++|+||++++|+.++|+|+||||||||+++|+|+++ |.+|.+ .+.+ |+.. .
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-ccCCCEEEecCcEEEEcCcccccc
Confidence 5889999999964 578999999999999999999999999999999999998 777644 3322 1110 0
Q ss_pred cc---cccCC--CChhhHHHHHHHHHHHHHHHHhc--C-ceEE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026740 144 GL---NRDLS--FKAEDRVENIRRIGEVAKLFADA--G-VICI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211 (234)
Q Consensus 144 ~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~ 211 (234)
.- +..++ ++.++..+.+... .....+... + ...+ ..++.+.+++...||+++...++ +++|+|++
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~-~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I--lLLDEptS 769 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVT-ALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI--YIFDDPLS 769 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHh-CCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence 00 00011 1222221211111 011111111 1 1122 23456778888999999999998 89999999
Q ss_pred hhhhcchhhHHHHHHcC
Q 026740 212 VCEARDPKGLYKLAREG 228 (234)
Q Consensus 212 ~l~~R~~~~l~~~~~~~ 228 (234)
.++....+.+++....+
T Consensus 770 aLD~~t~~~I~~~~l~~ 786 (1495)
T PLN03232 770 ALDAHVAHQVFDSCMKD 786 (1495)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 99888888787765443
No 368
>PLN03140 ABC transporter G family member; Provisional
Probab=99.48 E-value=1.1e-13 Score=142.14 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=100.3
Q ss_pred cceeeceeeec-------------CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-CCccEEEEcCccc
Q 026740 76 VAKSTNILWHK-------------NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNC 141 (234)
Q Consensus 76 ~~~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i~~~g~~v 141 (234)
.+..+|+++.. +.+.+|+|+|+++++|++++|+||||||||||+++|+|.... +.+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 46778888765 234799999999999999999999999999999999998651 2579999999775
Q ss_pred cccc-cccCCCChhh--------HHHHHHHH---------------HHHHHHHHhcCceE-----E-----EecCcccHH
Q 026740 142 RHGL-NRDLSFKAED--------RVENIRRI---------------GEVAKLFADAGVIC-----I-----ACLISPYRK 187 (234)
Q Consensus 142 ~~~~-~~~~~~~~~~--------~~~~~~~~---------------~~~~~~~~~~~~~~-----~-----~~~~~~~~~ 187 (234)
.... ...+++.+++ ..+.+... ..+..++...++.. + ..++.+.++
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 3210 0111111111 11111110 01222333333211 1 124455677
Q ss_pred HHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 188 ~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+..++++++..+.+ +++|||+..|+.+....+.+.+++
T Consensus 1027 RvsIa~aL~~~P~l--L~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140 1027 RLTIAVELVANPSI--IFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred HHHHHHHHhhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 77899999999999 899999999998888777776654
No 369
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.47 E-value=1.2e-13 Score=110.28 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=56.0
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHH
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGE 165 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (234)
-+-.+|.++..||++-++||||||||||+..++|++ |.+|+|.++|.++.. ++..+..+.+.++.+
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G~~l~~-------~~~~eLArhRAYLsQ 79 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPLEA-------WSATELARHRAYLSQ 79 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECCcchhH-------HhHhHHHHHHHHHhh
Confidence 366789999999999999999999999999999977 689999999999874 666667666665443
No 370
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.46 E-value=2.6e-13 Score=139.26 Aligned_cols=138 Identities=16% Similarity=0.108 Sum_probs=93.7
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc---cCCccEEEEcCcccccc---ccccCCCChhh------
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRHG---LNRDLSFKAED------ 155 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~---~p~~G~i~~~g~~v~~~---~~~~~~~~~~~------ 155 (234)
.+++|+|+|+.+++||+++|+||||||||||+|+|+|++. .|.+|+|.++|+++... ....+++..++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 4679999999999999999999999999999999999862 26789999999876321 01111111111
Q ss_pred --HHHHHHH-------------------HHHH-HHHHHhcCceEE----------EecCcccHHHHHHHHHhCCCCCceE
Q 026740 156 --RVENIRR-------------------IGEV-AKLFADAGVICI----------ACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 156 --~~~~~~~-------------------~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
..+.+.. ...+ ..++...++... ..++.+.+++..++++++..+.+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v-- 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI-- 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE--
Confidence 0011100 0011 122333333221 12456677888999999999988
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+......+.+.+++
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~ 254 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKT 254 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHH
Confidence 899999999988888777766654
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.46 E-value=2.3e-13 Score=140.47 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=89.4
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccc---cc------cCCCChhhH
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGL---NR------DLSFKAEDR 156 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~---~~------~~~~~~~~~ 156 (234)
.++++|+||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|. +. ... +. .++.....
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g~-iayv~Q~~~l~~~Ti~eNI~~g~~~~~- 515 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSGR-ISFSPQTSWIMPGTIKDNIIFGLSYDE- 515 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCE-EEEEeCCCccCCccHHHHHHhccccch-
Confidence 568999999999999999999999999999999999998 89999999883 11 000 00 01110000
Q ss_pred HHHHHHHHHHHHHHHhcCce------EE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026740 157 VENIRRIGEVAKLFADAGVI------CI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
++...+.....+..+.... .+ ..++.+.+++...+++++....+ +++|+|+..++....+.+++..
T Consensus 516 -~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i--llLDep~saLD~~~~~~i~~~~ 591 (1490)
T TIGR01271 516 -YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFTHLDVVTEKEIFESC 591 (1490)
T ss_pred -HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 0111111111111111111 11 23456677888999999999998 8999999999998888888753
No 372
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=1.4e-12 Score=124.09 Aligned_cols=132 Identities=21% Similarity=0.214 Sum_probs=88.0
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCccccccccc-cCCCChhhH--------
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHGLNR-DLSFKAEDR-------- 156 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~~~~-~~~~~~~~~-------- 156 (234)
.+++|++||..+++||++||+||||||||||+++|+|.... ..+|+|.+||+........ ..++..|+-
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 46899999999999999999999999999999999998862 3579999999543221100 001111100
Q ss_pred HHH---------------HHHHHHHHHHHHhcCceE-----EE-----ecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026740 157 VEN---------------IRRIGEVAKLFADAGVIC-----IA-----CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211 (234)
Q Consensus 157 ~~~---------------~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~ 211 (234)
++. ..+...+..+....++.. +. ..+.+.+++...+.+++..+.+ +++|||+.
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i--LflDEPTS 199 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI--LFLDEPTS 199 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCE--EEecCCCC
Confidence 000 001113444455544431 11 1234566777899999999999 89999999
Q ss_pred hhhhcchhhH
Q 026740 212 VCEARDPKGL 221 (234)
Q Consensus 212 ~l~~R~~~~l 221 (234)
.|+......+
T Consensus 200 GLDS~sA~~v 209 (613)
T KOG0061|consen 200 GLDSFSALQV 209 (613)
T ss_pred CcchhhHHHH
Confidence 9987776443
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=3.1e-13 Score=135.78 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=105.4
Q ss_pred cceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc-
Q 026740 76 VAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD- 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~- 148 (234)
.++++|++.+|... .+|+++||+|++||.+||+|..|||||||+.+|-++.. |.+|+|.+||.|+.+.. ...
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e-~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE-PAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC-ccCCeEEEcCeecccccHHHHHhcC
Confidence 68899999999644 79999999999999999999999999999999999998 89999999999986421 000
Q ss_pred ---------------------CCCChhhHHHHHHHHHHHHHHHHhcC-ce-EE----EecCcccHHHHHHHHHhCCCCCc
Q 026740 149 ---------------------LSFKAEDRVENIRRIGEVAKLFADAG-VI-CI----ACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 149 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~----~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
-.++.++.++.+....--..+-+.+. +- .+ ..++.+.++..-.+|++|.+..+
T Consensus 1217 sIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred eeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 01222333333332211111112111 11 11 23456677777889999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+||.+...+.....-+-+-+|+
T Consensus 1297 --LvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1297 --LVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred --EEEecccccCChHHHHHHHHHHHH
Confidence 899999999977666555555554
No 374
>PLN03140 ABC transporter G family member; Provisional
Probab=99.41 E-value=7.4e-13 Score=136.05 Aligned_cols=137 Identities=12% Similarity=0.094 Sum_probs=92.2
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccccccc-cccCCCChhh--------
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGL-NRDLSFKAED-------- 155 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~~-~~~~~~~~~~-------- 155 (234)
.+.+|+|+|+.+++|++++|+||||||||||+|+|+|++. |. +|+|.++|+++.... ...+++..++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 4679999999999999999999999999999999999987 77 899999998764211 1111111111
Q ss_pred HHHHHHHHH----------------------------------------------HHHHHHHhcCceE-----E-----E
Q 026740 156 RVENIRRIG----------------------------------------------EVAKLFADAGVIC-----I-----A 179 (234)
Q Consensus 156 ~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~-----~-----~ 179 (234)
..+.+.... .+..++...++.. + .
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 011111000 0112233333321 1 1
Q ss_pred ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 180 ~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++.+.+++...++.++..+.+ +++|||+..|+......+.+.+++
T Consensus 336 glSGGerkRVsia~aL~~~p~v--lllDEPTsGLDs~t~~~i~~~Lr~ 381 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKT--LFMDEISTGLDSSTTYQIVKCLQQ 381 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcE--EEEeCCCcCccHHHHHHHHHHHHH
Confidence 2345566677788888998888 899999999988887777766654
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.37 E-value=8.6e-13 Score=120.43 Aligned_cols=150 Identities=14% Similarity=0.121 Sum_probs=101.6
Q ss_pred cccceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc----
Q 026740 74 STVAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD---- 148 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~---- 148 (234)
.|++.+.|+++.|.+. .+..+++|-+..++.++++||||+|||||+|++.|.+. |..|.+.-.-...-...+..
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H~~~~~y~Qh~~e~ 465 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSHNKLPRYNQHLAEQ 465 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-cccccccccccccchhhhhhhHhh
Confidence 4688999999999755 68899999999999999999999999999999999999 89998866544432111100
Q ss_pred CCCChhhHH---H-H--HHHHHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026740 149 LSFKAEDRV---E-N--IRRIGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216 (234)
Q Consensus 149 ~~~~~~~~~---~-~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R 216 (234)
+.+...... + + ......+..++..+++. ++..++.+.+.+.-.++-+++.+.+ +++|+|++.++-.
T Consensus 466 ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l--LlLDEPtnhLDi~ 543 (614)
T KOG0927|consen 466 LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL--LLLDEPTNHLDIE 543 (614)
T ss_pred cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE--EEecCCCcCCCch
Confidence 111111000 0 0 01112333344444442 2333445556666677888999999 8999999999766
Q ss_pred chhhHHHHHH
Q 026740 217 DPKGLYKLAR 226 (234)
Q Consensus 217 ~~~~l~~~~~ 226 (234)
....+.+.+-
T Consensus 544 tid~laeaiN 553 (614)
T KOG0927|consen 544 TIDALAEAIN 553 (614)
T ss_pred hHHHHHHHHh
Confidence 6666666654
No 376
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.37 E-value=2.4e-13 Score=120.16 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=78.1
Q ss_pred EEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh--------hHHHHHHHH------------H
Q 026740 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE--------DRVENIRRI------------G 164 (234)
Q Consensus 107 liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~--------~~~~~~~~~------------~ 164 (234)
|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+++..+ ...+++... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 689999999999999999998 99999999998874311 011111111 111222110 0
Q ss_pred HHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 165 EVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 165 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+...+...++.. ...++.+.++....+++++..+.+ +++|||+..++......+++.+++
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--llLDEP~s~LD~~~~~~l~~~l~~ 145 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI--LLLDEPLSALDKKLRDQMQLELKT 145 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence 1222233333321 123455667778889999999998 899999999998888888877754
No 377
>PTZ00243 ABC transporter; Provisional
Probab=99.36 E-value=2.3e-12 Score=133.48 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=89.5
Q ss_pred eeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccc---ccc----CCC-
Q 026740 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGL---NRD----LSF- 151 (234)
Q Consensus 83 ~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~---~~~----~~~- 151 (234)
.+.+++..+++|+||++++|++++|+||||||||||+++|+|++. |.+|+|.+.+. +. ... +.. +.+
T Consensus 667 ~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-~~~G~i~~~~~-i~yv~Q~~~l~~~Tv~enI~~~ 744 (1560)
T PTZ00243 667 FFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERS-IAYVPQQAWIMNATVRGNILFF 744 (1560)
T ss_pred ccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCe-EEEEeCCCccCCCcHHHHHHcC
Confidence 345566789999999999999999999999999999999999998 89999987532 11 000 000 000
Q ss_pred ChhhHHHHHHHHHH---HHHHHHhc--Cc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhH
Q 026740 152 KAEDRVENIRRIGE---VAKLFADA--GV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (234)
Q Consensus 152 ~~~~~~~~~~~~~~---~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l 221 (234)
.+.+. +.+..... ....+... +. .....++.+.+++...+++++..+.+ +++|+|+..++....+.+
T Consensus 745 ~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~i--llLDEP~saLD~~~~~~i 821 (1560)
T PTZ00243 745 DEEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDV--YLLDDPLSALDAHVGERV 821 (1560)
T ss_pred ChhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCccccCCHHHHHHH
Confidence 01000 01111101 11111111 11 01123456677788899999999998 899999999987766766
Q ss_pred HHHH
Q 026740 222 YKLA 225 (234)
Q Consensus 222 ~~~~ 225 (234)
++..
T Consensus 822 ~~~~ 825 (1560)
T PTZ00243 822 VEEC 825 (1560)
T ss_pred HHHH
Confidence 6644
No 378
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.34 E-value=5.4e-12 Score=106.04 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=31.8
Q ss_pred ecCCccccccceeeecCCEEEEEEcCCCCcHHHHH
Q 026740 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (234)
Q Consensus 85 ~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLl 119 (234)
...+..+++++||++++||+++|+|+||||||||+
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 33467899999999999999999999999999996
No 379
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.31 E-value=1.9e-11 Score=116.94 Aligned_cols=138 Identities=58% Similarity=0.989 Sum_probs=112.7
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV 175 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (234)
+..-+++.++++.|.+||||||+++.|+..+.....+.+++++++++..+....+++.+++..+++.+..++..+...+.
T Consensus 454 ~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~ 533 (632)
T PRK05506 454 ARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGL 533 (632)
T ss_pred HHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33445799999999999999999999998876334567899999988766555678888888888887777777777787
Q ss_pred eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
..+..+..+.+..|+.+++++....+..++++.|.+.|.+|+.++||++.+.+++.++
T Consensus 534 ~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l 591 (632)
T PRK05506 534 IVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNF 591 (632)
T ss_pred EEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccc
Confidence 7777777777788889998887767777999999999999999999988877776654
No 380
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.31 E-value=5.4e-11 Score=95.92 Aligned_cols=132 Identities=36% Similarity=0.581 Sum_probs=88.0
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI 178 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (234)
.++|.++++.|++||||||+++.|+..+..+..+.++++++.++.... ..++......+...+...+.......+..++
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI 82 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVI 82 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999998865667889999988764221 1123333333322222233333444454555
Q ss_pred EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 179 ~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
.......+..+...+.++.. ...++++.|.+.+.+|..+++|....++++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~ 135 (176)
T PRK05541 83 VTTISMFDEIYAYNRKHLPN--YFEVYLKCDMEELIRRDQKGLYTKALKGEIKNV 135 (176)
T ss_pred EEeCCcHHHHHHHHHhhcCC--eEEEEEeCCHHHHHHhchhhHHHHHHcCccccc
Confidence 55444444556666666553 245899999999999999888887766665543
No 381
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.29 E-value=2.5e-11 Score=114.46 Aligned_cols=137 Identities=47% Similarity=0.684 Sum_probs=104.3
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADA 173 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (234)
.-..++|++++|+|++||||||+++.|+..+. ...| .++++++.++..+..+.+++..++..+.+++...+......
T Consensus 386 ~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~-~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~ 464 (568)
T PRK05537 386 PPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM-EMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKN 464 (568)
T ss_pred ccccCCCeEEEEECCCCChHHHHHHHHHHHhh-hccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 34578899999999999999999999999887 4234 47889988876555566788888877777665555544455
Q ss_pred CceEEEecCcccHHHHHHHHHhCCCCC-ceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 174 GVICIACLISPYRKDRDACRSMLPEGD-FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
+...+.....+.++.|+..++++...+ +..++++.|.+.|.+|+.+.||+..+.+.++.+
T Consensus 465 Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l 525 (568)
T PRK05537 465 GGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGF 525 (568)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhcc
Confidence 656666655677777788888887644 456899999999999999999977666666554
No 382
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.28 E-value=3.1e-12 Score=105.38 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=76.1
Q ss_pred ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---------ccEEEEcCccccccc-cccCCCChhhHHHHHH-
Q 026740 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---------KLTYILDGDNCRHGL-NRDLSFKAEDRVENIR- 161 (234)
Q Consensus 93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---------~G~i~~~g~~v~~~~-~~~~~~~~~~~~~~~~- 161 (234)
+++++++.+| +++|+||||||||||+++|++++. +. .|.+.+.|++..... ...+++..++....+.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG-EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc-cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence 6789999999 999999999999999999999875 43 235666666542211 0111222211100000
Q ss_pred -HHHHHHHHHHhcC--ceEEEecCcccHHHHHHHHHhC----CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 162 -RIGEVAKLFADAG--VICIACLISPYRKDRDACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 162 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll----~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
....+..++.... ......++.+.++....++.++ ....+ +++|||+..++......+++.+++
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~i--lllDEP~~~LD~~~~~~l~~~l~~ 162 (197)
T cd03278 92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPF--CVLDEVDAALDDANVERFARLLKE 162 (197)
T ss_pred EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 0001111111111 1112233445555556666553 44466 899999999988888887777664
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=114.71 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=100.0
Q ss_pred ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-cccccccc----
Q 026740 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD---- 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-v~~~~~~~---- 148 (234)
..++++|++..-+ +...+++.+|++++|+.+-|.|+||||||||+|+|+|+.+ -.+|+|.+-.+. +-. .++.
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P~~~~~lf-lpQ~PY~p 468 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-WGSGRISMPADSALLF-LPQRPYLP 468 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-cCCCceecCCCCceEE-ecCCCCCC
Confidence 4788999998885 4678999999999999999999999999999999999987 567888765222 210 0000
Q ss_pred -------C-------CCChhhHHHHHHHHHHHHHHHHhcCc-eEE-EecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026740 149 -------L-------SFKAEDRVENIRRIGEVAKLFADAGV-ICI-ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212 (234)
Q Consensus 149 -------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~ 212 (234)
+ .++.++..+.+..+ ....+...... ... ..++.+.+++...||-++.++++ +++||.++.
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~v-gL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~--v~LDEATsA 545 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKV-GLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW--VFLDEATSA 545 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHc-CcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE--EEEecchhc
Confidence 0 02222222221111 00111111000 001 11234556677889999999999 899999999
Q ss_pred hhhcchhhHHHHHHc
Q 026740 213 CEARDPKGLYKLARE 227 (234)
Q Consensus 213 l~~R~~~~l~~~~~~ 227 (234)
+++.....+|+.+++
T Consensus 546 LDe~~e~~l~q~l~~ 560 (604)
T COG4178 546 LDEETEDRLYQLLKE 560 (604)
T ss_pred cChHHHHHHHHHHHh
Confidence 999999999999887
No 384
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.27 E-value=5.2e-12 Score=93.72 Aligned_cols=48 Identities=29% Similarity=0.195 Sum_probs=43.7
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~ 143 (234)
..++++++|++++|++++|+||||||||||++++. +|.+.++|+++..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~ 49 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVE 49 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHH
Confidence 46899999999999999999999999999999985 5889999998853
No 385
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.26 E-value=7.2e-12 Score=114.21 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=45.3
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEEcCcccc
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDNCR 142 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~~g~~v~ 142 (234)
.+|+++|+++++||+++|+||||||||||++ +++.. |.+| +|.++|.++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECC
Confidence 5799999999999999999999999999999 67676 6666 8999999986
No 386
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.3e-11 Score=112.28 Aligned_cols=142 Identities=20% Similarity=0.206 Sum_probs=89.4
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCcccccc---ccccC-
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHG---LNRDL- 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~---~~~~~- 149 (234)
=+...+++..||++.+|.+.++++..|..++|+|+||+|||||+|+|+.-.-. |..- .+-|.++... +..+.
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veq--E~~g~~t~~~~~~l~~D~~ 157 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQ--EVRGDDTEALQSVLESDTE 157 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchh--heeccchHHHhhhhhccHH
Confidence 35667899999999999999999999999999999999999999999871110 1111 1222222110 00000
Q ss_pred --CCChhhHHHHHH-HHHHHHH-HHHhcC------ceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchh
Q 026740 150 --SFKAEDRVENIR-RIGEVAK-LFADAG------VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (234)
Q Consensus 150 --~~~~~~~~~~~~-~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~ 219 (234)
.+-.++..-..+ ....+.. .+...+ ..+...++.+++-..+.+++++..++| +++|||++.|+-+...
T Consensus 158 ~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDl--LLLDEPTNhLDv~av~ 235 (582)
T KOG0062|consen 158 RLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDL--LLLDEPTNHLDVVAVA 235 (582)
T ss_pred HHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCE--EeecCCcccchhHHHH
Confidence 000000000000 0011111 222222 245567788888888999999999999 8999999999766544
Q ss_pred hH
Q 026740 220 GL 221 (234)
Q Consensus 220 ~l 221 (234)
=|
T Consensus 236 WL 237 (582)
T KOG0062|consen 236 WL 237 (582)
T ss_pred HH
Confidence 33
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.23 E-value=4.6e-12 Score=104.03 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=70.5
Q ss_pred cceeeceeeec----CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC---CccEEEEcCcccccccccc
Q 026740 76 VAKSTNILWHK----NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGDNCRHGLNRD 148 (234)
Q Consensus 76 ~~~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p---~~G~i~~~g~~v~~~~~~~ 148 (234)
++.++|++..+ |-+.+++++|+++.+||+-+++|.||||||-.+|+|+|..+.. +....+|++.++.
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL------ 76 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLL------ 76 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhh------
Confidence 45666666655 4578999999999999999999999999999999999987621 2244566666655
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcC
Q 026740 149 LSFKAEDRVENIRRIGEVAKLFADAG 174 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (234)
.+++.++++.++. .++++||++.
T Consensus 77 -~L~Pr~RRk~ig~--~isMIFQeP~ 99 (330)
T COG4170 77 -RLSPRERRKLVGH--NVSMIFQEPQ 99 (330)
T ss_pred -cCChHHhhhhhcc--chhhhhcCch
Confidence 3788888877776 7889998764
No 388
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.23 E-value=4.7e-11 Score=120.36 Aligned_cols=144 Identities=18% Similarity=0.241 Sum_probs=106.0
Q ss_pred ccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026740 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF 151 (234)
Q Consensus 75 ~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~ 151 (234)
+.++++|.++..+. .+.|+|+||+|++|+.++|+|+-|||||+|+.+|.|.++ ..+|.+.++|. +. |
T Consensus 517 ~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG~v~v~gs-ia--------Y 586 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAVNGS-VA--------Y 586 (1381)
T ss_pred ceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-cccceEEEcCe-EE--------E
Confidence 35777777776643 348999999999999999999999999999999999998 88999999986 21 1
Q ss_pred ChhhH------------------HHHHHHHHHHHHHHHhcCc------eEE----EecCcccHHHHHHHHHhCCCCCceE
Q 026740 152 KAEDR------------------VENIRRIGEVAKLFADAGV------ICI----ACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 152 ~~~~~------------------~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
.+|+. .+++..+.+...+-.|... ..+ ..++.+.+++-..||+.-+..++
T Consensus 587 v~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI-- 664 (1381)
T KOG0054|consen 587 VPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI-- 664 (1381)
T ss_pred eccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE--
Confidence 11111 1223333333333333322 222 23456778888999999999998
Q ss_pred EEEeCChhhhhhcchhhHHHHHHcCcC
Q 026740 204 VFMDVPLQVCEARDPKGLYKLAREGKV 230 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~~~~ 230 (234)
.++|-|.+.++....+-+|+....|-.
T Consensus 665 YLLDDplSAVDahvg~~if~~ci~~~L 691 (1381)
T KOG0054|consen 665 YLLDDPLSAVDAHVGKHIFEECIRGLL 691 (1381)
T ss_pred EEEcCcchhhhHhhhHHHHHHHHHhhh
Confidence 899999999999999999988776544
No 389
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.21 E-value=9.4e-11 Score=99.12 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=33.4
Q ss_pred eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
+++|+ ++|++..++.+++ |++++|+||||||||||+++|+++
T Consensus 5 ~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 5 IIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred EEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHH
Confidence 33443 3566777888876 789999999999999999999844
No 390
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.16 E-value=3e-10 Score=92.00 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=68.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----ccCCCChhhHHHHHHHHHHHHHHHHh-cC
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLSFKAEDRVENIRRIGEVAKLFAD-AG 174 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 174 (234)
+|++++|+|+|||||||++++|++++. + +.++|+++..... ..+++...++..+...+....+.... ..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE 76 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999999886 4 5889988643211 11333333333344443343333311 11
Q ss_pred ceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchh
Q 026740 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (234)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~ 219 (234)
...++ .....+..++.+++... .+..++++.|.+.+.+|..+
T Consensus 77 ~g~iv-~s~~~~~~R~~~r~~~~--~~~~v~l~a~~~~l~~Rl~~ 118 (176)
T PRK09825 77 TGFIV-CSSLKKQYRDILRKSSP--NVHFLWLDGDYETILARMQR 118 (176)
T ss_pred CEEEE-EEecCHHHHHHHHhhCC--CEEEEEEeCCHHHHHHHHhc
Confidence 11122 22234556666765543 45568999999999887644
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.12 E-value=1.8e-10 Score=105.43 Aligned_cols=55 Identities=22% Similarity=0.134 Sum_probs=50.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~ 131 (234)
-+++.|+++.|.++..+.|+.|++.+|+.++|+|+|||||||++++|.|-.. |..
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-P~p 129 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-PIP 129 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-CCC
Confidence 4778999999999999999999999999999999999999999999999876 544
No 392
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=5.3e-10 Score=100.52 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=97.8
Q ss_pred cccceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--------
Q 026740 74 STVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------- 144 (234)
Q Consensus 74 ~~~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-------- 144 (234)
.|++-+.+++|.| +..+.+..++|-|.--..++|+||||.|||||+++|.|-+. |..|+.+-+- .++-.
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~~GE~RKnh-rL~iG~FdQh~~E 661 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PNDGELRKNH-RLRIGWFDQHANE 661 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-CCcchhhccc-eeeeechhhhhHH
Confidence 4688899999999 56678899999999999999999999999999999999998 8888765331 11100
Q ss_pred -ccc----------cCCCChhhHHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026740 145 -LNR----------DLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (234)
Q Consensus 145 -~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l 213 (234)
++. .+.+.-++.+..++. .+ +......+.+..++.+.+.+...+.-++..+++ +++|+|++.|
T Consensus 662 ~L~~Eetp~EyLqr~FNlpyq~ARK~LG~---fG-L~sHAHTikikdLSGGQKaRValaeLal~~PDv--lILDEPTNNL 735 (807)
T KOG0066|consen 662 ALNGEETPVEYLQRKFNLPYQEARKQLGT---FG-LASHAHTIKIKDLSGGQKARVALAELALGGPDV--LILDEPTNNL 735 (807)
T ss_pred hhccccCHHHHHHHhcCCChHHHHHHhhh---hh-hhhccceEeeeecCCcchHHHHHHHHhcCCCCE--EEecCCCCCc
Confidence 000 001111111111110 00 011111233344556666666677777888887 8999999999
Q ss_pred hhcchhhHHHHHHc
Q 026740 214 EARDPKGLYKLARE 227 (234)
Q Consensus 214 ~~R~~~~l~~~~~~ 227 (234)
+......|...+.+
T Consensus 736 DIESIDALaEAIne 749 (807)
T KOG0066|consen 736 DIESIDALAEAINE 749 (807)
T ss_pred chhhHHHHHHHHHh
Confidence 88888888888874
No 393
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.08 E-value=6.2e-10 Score=102.34 Aligned_cols=147 Identities=24% Similarity=0.318 Sum_probs=99.9
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----c
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----D 148 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~ 148 (234)
.+++++++++... .++|+||++++||+++|.|.-|||+|-|+++|.|..+ +.+|+|.++|+.+....+. .
T Consensus 261 ~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 261 EPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-ASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-CCCceEEECCEEccCCCHHHHHHcC
Confidence 4467777776543 5789999999999999999999999999999999666 7899999999987543211 2
Q ss_pred CCCChhhHH-----------HHH-----HHH------------HHHHHHHHhcCc------eEEEecCcccHHHHHHHHH
Q 026740 149 LSFKAEDRV-----------ENI-----RRI------------GEVAKLFADAGV------ICIACLISPYRKDRDACRS 194 (234)
Q Consensus 149 ~~~~~~~~~-----------~~~-----~~~------------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 194 (234)
++|.+++|. +++ ... ............ ..+..++.+.++..-.++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence 344444442 110 000 000011111111 1223345555666667788
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+...+.+ +++|+|+-.++--...++|+.+++
T Consensus 416 L~~~p~v--LilDEPTRGIDVGAK~eIy~li~~ 446 (500)
T COG1129 416 LATDPKV--LILDEPTRGIDVGAKAEIYRLIRE 446 (500)
T ss_pred HhcCCCE--EEECCCCcCcccchHHHHHHHHHH
Confidence 8888888 899999999977777888888764
No 394
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.06 E-value=1.8e-09 Score=99.69 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=100.7
Q ss_pred ccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE--cC--cccccccc--
Q 026740 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL--DG--DNCRHGLN-- 146 (234)
Q Consensus 75 ~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~--~g--~~v~~~~~-- 146 (234)
..+++++++..-. +..+++++||+|++|+-+-|+||||||||+|+|.++|+.+ ..+|.+.. +| +++--.+.
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-STGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-cCCCeEEecccCCCCceEEecCCC
Confidence 5789999998875 4567899999999999999999999999999999999886 57888754 33 22210000
Q ss_pred --------ccCCC------------ChhhHHHHHHHHHHHHHHHHhcCce------EEEe-cCcccHHHHHHHHHhCCCC
Q 026740 147 --------RDLSF------------KAEDRVENIRRIGEVAKLFADAGVI------CIAC-LISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 147 --------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~ll~~~ 199 (234)
..+-+ +.++..+.+..+ +...+....+-. .+.. ++.+..++...||-...++
T Consensus 511 Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v-~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kP 589 (659)
T KOG0060|consen 511 YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENV-QLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP 589 (659)
T ss_pred CccccchhheeeccCccccccccCCCHHHHHHHHHHh-hhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCC
Confidence 00001 111111111111 222222222211 1111 2344556667788888999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHHHcCcC
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKV 230 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~ 230 (234)
.+ .++||.++.+..-....+|++.++-.|
T Consensus 590 k~--AiLDE~TSAv~~dvE~~~Yr~~r~~gi 618 (659)
T KOG0060|consen 590 KF--AILDECTSAVTEDVEGALYRKCREMGI 618 (659)
T ss_pred ce--EEeechhhhccHHHHHHHHHHHHHcCC
Confidence 88 799999999999889999999998654
No 395
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.05 E-value=9.3e-11 Score=116.54 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=48.6
Q ss_pred CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC--ccEEEEcCcccc
Q 026740 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCR 142 (234)
Q Consensus 87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~--~G~i~~~g~~v~ 142 (234)
+.+++|+||+=-+.+|.+++|+|+||||||||+++|+|... .+ +|.|+++|....
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t-~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT-GGYIEGDILISGFPKD 858 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc-cceEEeEEEECCeeCc
Confidence 45689999999999999999999999999999999999754 22 599999998876
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.00 E-value=2.3e-09 Score=87.93 Aligned_cols=66 Identities=20% Similarity=0.121 Sum_probs=58.1
Q ss_pred ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
..++++++.|.|. .-+++-|+|++++.|..+.++|.||||||||+|+|+|-.- ...|.|.+.|.+-
T Consensus 12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-v~~~~v~Vlgrsa 78 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-VGGGVVQVLGRSA 78 (291)
T ss_pred ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-ccCCeEEEcCcCc
Confidence 3688999999996 4589999999999999999999999999999999999765 4558888888764
No 397
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.99 E-value=1e-09 Score=91.31 Aligned_cols=47 Identities=23% Similarity=0.211 Sum_probs=35.9
Q ss_pred cceeeceeeecCCccccccceeeec-CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQ-KGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~-~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++++|+. .|.+. .+++|+.. +|++++|+||||||||||+++|++.+
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence 46677777 44333 45667654 58999999999999999999999644
No 398
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.96 E-value=4.5e-10 Score=92.67 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=30.8
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
..+.+|++++. |++++|+||||||||||+|+|++..
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 34677777665 6999999999999999999999865
No 399
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=2.4e-09 Score=83.76 Aligned_cols=115 Identities=28% Similarity=0.376 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----cCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DLSFKAEDRVENIRRIGEVAKLFADAGVICI 178 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (234)
++.++|++||||||..++|.--+..+ +++|+|.....+. .+.++.++|..|+..+......-...+-..+
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~-----F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vV 88 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLK-----FIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVV 88 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCc-----ccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEE
Confidence 78899999999999999999877633 7899998765443 3678888999998877655544434455667
Q ss_pred EecCcccHHHHHHHHHhCC--------CCCceEEEEeCChhhhhhcc--hhhHHH
Q 026740 179 ACLISPYRKDRDACRSMLP--------EGDFIEVFMDVPLQVCEARD--PKGLYK 223 (234)
Q Consensus 179 ~~~~~~~~~~~~~~~~ll~--------~~~l~~~~ld~P~~~l~~R~--~~~l~~ 223 (234)
.+++..+++.|++++..+. ...+..+++....+++..|- +++.|+
T Consensus 89 lACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM 143 (191)
T KOG3354|consen 89 LACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM 143 (191)
T ss_pred EEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccC
Confidence 7777778888999998665 23455678888888888876 444443
No 400
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.93 E-value=1e-08 Score=88.02 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=30.8
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHH
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l 122 (234)
.-|+|+|++|+.|.+++|+|+||||||||++.+
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 458999999999999999999999999999866
No 401
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.92 E-value=1.3e-09 Score=92.82 Aligned_cols=37 Identities=32% Similarity=0.180 Sum_probs=30.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGD 139 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~ 139 (234)
+.+++|+||||||||||+++|++++. +. .|++++.+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~ 62 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNL 62 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCH
Confidence 55899999999999999999999987 44 456666554
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.91 E-value=2.4e-09 Score=96.59 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=68.4
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE-----EEEcCccccccccccCCCChhhHHHHHHHHHHH---H--
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT-----YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV---A-- 167 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~-----i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 167 (234)
++..||+++++||||-||||++++|+|.++ |++|. |.+.-|-+.. +...+.++. ++..... .
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ik-Pdeg~~~~~~vSyKPQyI~~----~~~gtV~~~---l~~~~~~~~~~s~ 434 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGSEEDLKVSYKPQYISP----DYDGTVEDL---LRSAIRSAFGSSY 434 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhcccc-CCCCCCccceEeecceeecC----CCCCcHHHH---HHHhhhhhcccch
Confidence 467889999999999999999999999999 89885 1111111111 001111111 1110000 0
Q ss_pred ---HHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 168 ---KLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 168 ---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
.++..+.+ ..+..++.+.-++..++..+....++ .++|+|...|+-.-+-..-+++|
T Consensus 435 ~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl--YllDEPSA~LDvEqR~~vakvIR 499 (591)
T COG1245 435 FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL--YLLDEPSAYLDVEQRIIVAKVIR 499 (591)
T ss_pred hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE--EEecCchhhccHHHHHHHHHHHH
Confidence 01111111 11223345555667788888888888 78999999995444433444443
No 403
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=5.4e-09 Score=81.22 Aligned_cols=109 Identities=28% Similarity=0.364 Sum_probs=84.6
Q ss_pred EcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----cCCCChhhHHHHHHHHHHHHHHHHhcCceEEEecC
Q 026740 108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DLSFKAEDRVENIRRIGEVAKLFADAGVICIACLI 182 (234)
Q Consensus 108 iG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (234)
+|.+||||||...+|+-.+. --+++|+++....+. .+.++.++|..|+..+..........+...++.++
T Consensus 1 MGVsG~GKStvg~~lA~~lg-----~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG-----AKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC-----CceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence 69999999999999998765 348999998754332 36788899999999887777665555555677777
Q ss_pred cccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc--hhhHHH
Q 026740 183 SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD--PKGLYK 223 (234)
Q Consensus 183 ~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~--~~~l~~ 223 (234)
..++..|++++.....+ ..++++.+.+++.+|- +++.|+
T Consensus 76 ALKr~YRD~LR~~~~~~--~Fv~L~g~~~~i~~Rm~~R~gHFM 116 (161)
T COG3265 76 ALKRSYRDLLREANPGL--RFVYLDGDFDLILERMKARKGHFM 116 (161)
T ss_pred HHHHHHHHHHhccCCCe--EEEEecCCHHHHHHHHHhcccCCC
Confidence 78888999999877654 4489999999998875 444443
No 404
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.88 E-value=4.3e-09 Score=86.71 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=29.8
Q ss_pred ccccceeeecCCE-EEEEEcCCCCcHHHHHHHHH
Q 026740 91 KRDRQQLLQQKGC-VIWITGLSGSGKSTLACALS 123 (234)
Q Consensus 91 ~l~~vs~~i~~Ge-~~~liG~nGsGKSTLlr~l~ 123 (234)
.+.++||++.+|+ +++|+||||||||||+|+|+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3557899999994 89999999999999999998
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.88 E-value=5e-09 Score=93.74 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=74.9
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-------cCCccEEEEcCcccccccccc--CCCChhhHHH
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-------WRGKLTYILDGDNCRHGLNRD--LSFKAEDRVE 158 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-------~p~~G~i~~~g~~v~~~~~~~--~~~~~~~~~~ 158 (234)
...+++|+||++++|++++|+|+|||||||++++|+|... .|++|.+.+--..+....+.. ..+......+
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 4568999999999999999999999999999999999753 277888876543333222111 1122111222
Q ss_pred HHHH-HHH---HHHHHHhcCceEEE-------ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026740 159 NIRR-IGE---VAKLFADAGVICIA-------CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA 215 (234)
Q Consensus 159 ~~~~-~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~ 215 (234)
+++. ..+ .-.++...++..-. .++.+++++-.+|..+.+.+++ ++.|+=.+.|+.
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~--~~iDEF~AhLD~ 540 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNV--LLIDEFAAHLDE 540 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCc--EEhhhhhhhcCH
Confidence 2211 111 11223333332221 1234455556666777777788 566766666643
No 406
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.85 E-value=1.3e-09 Score=90.15 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=66.8
Q ss_pred ceeeecCCEEEEEEcCCCCcHHHHHHHHH----hhcccCCccEEEEcCccccccccc-cCC----------CChh---hH
Q 026740 95 QQLLQQKGCVIWITGLSGSGKSTLACALS----QALHWRGKLTYILDGDNCRHGLNR-DLS----------FKAE---DR 156 (234)
Q Consensus 95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~----gll~~p~~G~i~~~g~~v~~~~~~-~~~----------~~~~---~~ 156 (234)
.++++.+| +++|+||||||||||+++|. |... +++|.+..+.+.+...... .+. +... ..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 34566677 99999999999999999995 6655 6566444222212111000 000 0000 00
Q ss_pred HHHHHHH--HHHHHHHHhcCceEEEecCcccHHH------HHHHHHhCCCCCceEEEEeCChhhhhhcchh-hHHHHHHc
Q 026740 157 VENIRRI--GEVAKLFADAGVICIACLISPYRKD------RDACRSMLPEGDFIEVFMDVPLQVCEARDPK-GLYKLARE 227 (234)
Q Consensus 157 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~-~l~~~~~~ 227 (234)
.+.+... ..+...+ ......++.+.++. ...++.++..+.+ +++|+|+..++.+... .+++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~----~~~~~~LS~G~~~~~~la~rlala~al~~~p~i--lllDEP~~~LD~~~~~~~l~~~l~~ 167 (204)
T cd03240 94 LENVIFCHQGESNWPL----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGI--LALDEPTTNLDEENIEESLAEIIEE 167 (204)
T ss_pred hhceeeechHHHHHHH----hcCccccCccHHHHHHHHHHHHHHHHhccCCCE--EEEcCCccccCHHHHHHHHHHHHHH
Confidence 0000000 0000000 01112233333332 3466777788888 8999999999888888 77776653
No 407
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.85 E-value=3.2e-08 Score=79.06 Aligned_cols=103 Identities=23% Similarity=0.292 Sum_probs=61.0
Q ss_pred EcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCCChhhHHHHHHHHHHHHHHHH-hcCceEEEec
Q 026740 108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFA-DAGVICIACL 181 (234)
Q Consensus 108 iG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 181 (234)
+|+|||||||++++|++.+ |.++++|+.+.... ...+.+....+..+...+....+... ..+...++ .
T Consensus 1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~ 74 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C 74 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence 6999999999999999976 45788886642110 01122233334444444444443322 22222223 2
Q ss_pred CcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 182 ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 182 ~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
....+..++.+++ ....+..++++.|.+.|.+|-.
T Consensus 75 s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~ 109 (163)
T PRK11545 75 SALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLK 109 (163)
T ss_pred ecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHH
Confidence 3334556666666 3345677999999999988853
No 408
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.80 E-value=4.1e-08 Score=89.39 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=101.4
Q ss_pred cccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc-cccc-----c
Q 026740 74 STVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGL-----N 146 (234)
Q Consensus 74 ~~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v-~~~~-----~ 146 (234)
.+++++++++..-. +.+.+.++||+++.||+++|.|-.|-|-+.|+.+|+|+.+ +.+|+|.++|+++ .... .
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-PASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-cCCceEEECCEeccccCCHHHHHh
Confidence 56999999998875 4688999999999999999999999999999999999887 7779999999997 2111 1
Q ss_pred ccCCCChhhHH-----------HHH--H-----------------HHHHHHHHHHhcCce------EEEecCcccHHHHH
Q 026740 147 RDLSFKAEDRV-----------ENI--R-----------------RIGEVAKLFADAGVI------CIACLISPYRKDRD 190 (234)
Q Consensus 147 ~~~~~~~~~~~-----------~~~--~-----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 190 (234)
..+++.|++|. ++. + .-.....+...+.+. +...++.+..+..=
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I 413 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI 413 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence 12445555542 000 0 000111122222221 11222334444445
Q ss_pred HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++++...+.+ ++...|+..++-=...-+++.+.+
T Consensus 414 laREl~~~p~l--LI~~qPTrGLDvgA~~~I~~~l~e 448 (501)
T COG3845 414 LARELARRPDL--LIAAQPTRGLDVGAIEFIHERLLE 448 (501)
T ss_pred hhhhhccCCCE--EEEcCCCccccHHHHHHHHHHHHH
Confidence 67888888888 788999999966555556665554
No 409
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.78 E-value=6.3e-08 Score=76.85 Aligned_cols=107 Identities=22% Similarity=0.314 Sum_probs=61.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCCChhhHHHHHHHHHHHHHHHHhcCceEEE
Q 026740 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA 179 (234)
Q Consensus 105 ~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (234)
++|+||+||||||+++.|++.+ |.++++++++.... ....++..++...++..+......+...+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi 75 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII 75 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4689999999999999999865 35678888764210 0012233344444444433333322222222233
Q ss_pred ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 180 ~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
......+..++.++.. ...+..++++.|.+.+.+|..
T Consensus 76 ~~t~~~~~~r~~~~~~--~~~~~~i~l~~~~e~~~~R~~ 112 (163)
T TIGR01313 76 TCSALKRHYRDILREA--EPNLHFIYLSGDKDVILERMK 112 (163)
T ss_pred EecccHHHHHHHHHhc--CCCEEEEEEeCCHHHHHHHHH
Confidence 2223334455555532 234555889999999988764
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.75 E-value=1.6e-08 Score=83.47 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=28.3
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
..++++.+|++++|+||||||||||+|+|++..
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 346667789999999999999999999999543
No 411
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.74 E-value=4.8e-08 Score=84.24 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
..++|+||||||||||+++|+|++. +++|++.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-TGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-CCCceEEECCEEee
Confidence 6789999999999999999999998 89999999999985
No 412
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.72 E-value=9.7e-09 Score=85.55 Aligned_cols=44 Identities=18% Similarity=0.053 Sum_probs=37.3
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
-++++|+. .|++..+++++++ ++++|+|||||||||++++|...
T Consensus 5 ~l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 5 KLVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred EEEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH
Confidence 35566665 7888889999987 79999999999999999999843
No 413
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.72 E-value=1.4e-07 Score=86.77 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=89.0
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc---------cccc
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC---------RHGL 145 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v---------~~~~ 145 (234)
-+..+|+-.--. +..++..++|+|++|-.+-|+||||||||+|.|.|.|+.+ ...|...+-..+. ....
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-vy~g~L~~P~~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-VYNGLLSIPRPNNIFYIPQRPYMSGG 559 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-ccCCeeecCCCcceEeccCCCccCcC
Confidence 455666655443 4557899999999999999999999999999999999876 3444433221110 0000
Q ss_pred ---c-----------ccCCCChhhHHHHHHHHHHHHHHHHhcCceE-EEec----CcccHHHHHHHHHhCCCCCceEEEE
Q 026740 146 ---N-----------RDLSFKAEDRVENIRRIGEVAKLFADAGVIC-IACL----ISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 146 ---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
+ .+-++..++....+..+ ..-.+.|..+-+. +..| ..+.+++...++-...++.. .++
T Consensus 560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v-~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky--alL 636 (728)
T KOG0064|consen 560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIV-HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY--ALL 636 (728)
T ss_pred cccceeecCCcHHHHHhcCCCHHHHHHHHHHh-hHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch--hhh
Confidence 0 01234444443333222 3334455433222 2222 34455566677777777776 567
Q ss_pred eCChhhhhhcchhhHHHHHHc
Q 026740 207 DVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~~ 227 (234)
||-++.....-...+|+.++.
T Consensus 637 DEcTsAvsidvE~~i~~~ak~ 657 (728)
T KOG0064|consen 637 DECTSAVSIDVEGKIFQAAKD 657 (728)
T ss_pred hhhhcccccchHHHHHHHHHh
Confidence 887777766666777877664
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.71 E-value=1.1e-07 Score=94.43 Aligned_cols=43 Identities=28% Similarity=0.225 Sum_probs=36.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHH
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~ 123 (234)
.+++++++. ..++++||+|++|++++|+|+||||||||++.+.
T Consensus 614 ~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 566777652 3599999999999999999999999999998763
No 415
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.71 E-value=1.1e-08 Score=83.41 Aligned_cols=48 Identities=25% Similarity=0.216 Sum_probs=41.6
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
.+=+.+.+++|+.++|+||||||||||+++|+++++ +..|.+.+.+..
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~ 62 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTA 62 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCcc
Confidence 344567799999999999999999999999999998 888999887643
No 416
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.65 E-value=2.3e-07 Score=76.51 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=67.4
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc---cc-cccccc--------cCCCChhhHHHH
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NC-RHGLNR--------DLSFKAEDRVEN 159 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~---~v-~~~~~~--------~~~~~~~~~~~~ 159 (234)
++++++++.+| +.+|+||||||||||+.+|...+. .... ....|. ++ ...... .-+........
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~- 87 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-GKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCV- 87 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-CCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCH-
Confidence 45677888887 779999999999999999986443 1110 000011 00 000000 00000000000
Q ss_pred HHHHHHHHHHHHh--cCceEEEecCcccHHHHHHHHHh----CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 160 IRRIGEVAKLFAD--AGVICIACLISPYRKDRDACRSM----LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l----l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.. ..++..++.. ........++.+.++....++.+ +..+.+ +++|||+..++......+++.+++
T Consensus 88 ~~-~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~i--lllDEP~~glD~~~~~~~~~~l~~ 158 (198)
T cd03276 88 LS-QDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPF--RCLDEFDVFMDMVNRKISTDLLVK 158 (198)
T ss_pred HH-HHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCE--EEecCcccccCHHHHHHHHHHHHH
Confidence 00 0011122221 11112233444555555666665 467777 899999999988887777776654
No 417
>PRK06762 hypothetical protein; Provisional
Probab=98.64 E-value=2.1e-07 Score=74.06 Aligned_cols=112 Identities=20% Similarity=0.178 Sum_probs=62.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEEEec
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL 181 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (234)
+.+++|.|++||||||+++.|+..+. + +.+.++++.++...............+.+. .........+...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~-~--~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~---~~~~~~~~~g~~vild~ 75 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG-R--GTLLVSQDVVRRDMLRVKDGPGNLSIDLIE---QLVRYGLGHCEFVILEG 75 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-C--CeEEecHHHHHHHhccccCCCCCcCHHHHH---HHHHHHHhCCCEEEEch
Confidence 46899999999999999999998763 2 677788777654221110000000111111 11111122343444333
Q ss_pred CcccHHHHHHHHHhCCCC--CceEEEEeCChhhhhhcchh
Q 026740 182 ISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPK 219 (234)
Q Consensus 182 ~~~~~~~~~~~~~ll~~~--~l~~~~ld~P~~~l~~R~~~ 219 (234)
.......++.++.+.+.. .+..++++.|.+.|.+|..+
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~ 115 (166)
T PRK06762 76 ILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHST 115 (166)
T ss_pred hhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhc
Confidence 222233344455554443 34568999999999988753
No 418
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=4.5e-08 Score=89.47 Aligned_cols=67 Identities=25% Similarity=0.132 Sum_probs=56.4
Q ss_pred cccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc---Ccccc
Q 026740 74 STVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD---GDNCR 142 (234)
Q Consensus 74 ~~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~---g~~v~ 142 (234)
.+.++.++++..|. +..+++.++ .+.+|++++|+|+||||||||+++|+++.. |+.|.|.+. |+++.
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liGergrev~ 207 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-FDTVVIALVGERGREVR 207 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCeeeeeecccCCccHH
Confidence 34677788888884 678888885 999999999999999999999999999887 888988875 45543
No 419
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.62 E-value=5.2e-07 Score=70.54 Aligned_cols=112 Identities=27% Similarity=0.283 Sum_probs=64.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----ccCCCChhhHHHHHHHHHHHHHHHH-hcCceE
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLSFKAEDRVENIRRIGEVAKLFA-DAGVIC 177 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 177 (234)
++.|.|++||||||+++.|...+ |...++++++..... ....+...+...+...+........ ..+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 75 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV 75 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence 47899999999999999998854 345778777664210 1112222223333333322222111 123333
Q ss_pred EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhh
Q 026740 178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (234)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~ 220 (234)
+.......+..++.+.+++....+..++++.|.+.+.+|....
T Consensus 76 Vid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 76 VVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred EEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence 3333334455666677665444566789999999998887443
No 420
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.56 E-value=3.6e-07 Score=74.37 Aligned_cols=37 Identities=35% Similarity=0.566 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
|++++|+||||||||||+++|++.+. + .+.+.+..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-T---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-C---eEEEcCEECC
Confidence 78999999999999999999999765 3 4666665554
No 421
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.51 E-value=1.7e-06 Score=69.62 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=26.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~ 136 (234)
|++++|+||||||||||++.|++.+. .. |.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~-~~-~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA-GD-PRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-cC-CcEEE
Confidence 67899999999999999999999875 33 44444
No 422
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.51 E-value=1.1e-07 Score=88.59 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=56.0
Q ss_pred eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
..|+++.+|...+++++++.+..|+.+.|+|+||||||||++.|.|+++ |.+|.+.++...+
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-p~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-DLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-CCCCcEEEecchh
Confidence 3588899998899999999999999999999999999999999999998 8889888776554
No 423
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4.1e-07 Score=83.35 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=95.7
Q ss_pred cccceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-cc---
Q 026740 74 STVAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NR--- 147 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-~~--- 147 (234)
.|.+++.++++.|... +++.+++++++--..++++|+||+||||++|++.+-+. |.+|.+.+.+.---... ..
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-PTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC-cccceeeecccceecchhHhhhh
Confidence 5688999999999644 58999999999999999999999999999999999887 88888877654211000 00
Q ss_pred ---------------cCCCChhhHHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026740 148 ---------------DLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212 (234)
Q Consensus 148 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~ 212 (234)
.-|..+++.+++.+.++- -.+.....+..++.+.+.....|.-.+..+.+ +.+|||++.
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl----~g~la~~si~~LSGGQKsrvafA~~~~~~Phl--LVLDEPTNh 512 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL----SGELALQSIASLSGGQKSRVAFAACTWNNPHL--LVLDEPTNH 512 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC----CchhhhccccccCCcchhHHHHHHHhcCCCcE--EEecCCCcc
Confidence 011222222222111100 00111112334555666666777777888888 899999999
Q ss_pred hhhcchhhHHHHHH
Q 026740 213 CEARDPKGLYKLAR 226 (234)
Q Consensus 213 l~~R~~~~l~~~~~ 226 (234)
|+......|-+.++
T Consensus 513 LD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 513 LDRDSLGALAKALK 526 (582)
T ss_pred ccHHHHHHHHHHHH
Confidence 96555555655554
No 424
>PF12558 DUF3744: ATP-binding cassette cobalt transporter; InterPro: IPR022216 This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with PF00005 from PFAM. There is a conserved REP sequence motif. There is a single completely conserved residue P that may be functionally important. The proteins in this family are frequently annotated as ABC Cobalt transporters however there is little accompanying literature to confirm this. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Probab=98.50 E-value=1.6e-08 Score=70.27 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=49.7
Q ss_pred cCCCCcccccccceeec----Cccccccccccccccccccccccceeeccccccc--cccccCcccceeeceee
Q 026740 17 CSPSLAEVDFRTSVKMS----GFFNVSRLRSLQPIKALEESATASVVQESAAISG--NNLCQNSTVAKSTNILW 84 (234)
Q Consensus 17 ~~~~l~~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 84 (234)
+++.|.++|||||||++ +++++.+..++.+++.+...........|..... .......++++++|++|
T Consensus 1 ks~lL~~~GIREPLYitALk~ag~~l~~~~~l~~l~~l~~~~~~~~l~~w~~~~~~~~~~~~~~~LL~l~nlsf 74 (74)
T PF12558_consen 1 KSDLLEQNGIREPLYITALKYAGVDLTKEDHLSDLDNLDLSDVKEKLQQWQDKQPPPKEKQEKEPLLELENLSF 74 (74)
T ss_pred CcchHhhcCCCccHHHHHHHHcCCCcccCCCccCHHHCCcHHHHHHHHHHHhccCCcccCCCCCceeeecCCcC
Confidence 46889999999999999 8999999999999988877764445555543211 11224456888888764
No 425
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.49 E-value=1.6e-07 Score=74.89 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=62.3
Q ss_pred ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC-ChhhHHHHHHHHHHHHHHHHhc
Q 026740 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF-KAEDRVENIRRIGEVAKLFADA 173 (234)
Q Consensus 95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (234)
.++.+.++.+++|+|||||||||+++++...+- ...+.+.. +.++.. +. .+..... +
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~-~~~~~~~~-~~~~~~------g~~~~~~~~~-----------~--- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALG-GAQSATRR-RSGVKA------GCIVAAVSAE-----------L--- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH-hcchhhhc-cCcccC------CCcceeeEEE-----------E---
Confidence 345555667999999999999999999877665 34333332 111111 11 0000000 0
Q ss_pred CceEEEecCcccHHHHHHHHHhCC----CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 174 GVICIACLISPYRKDRDACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~ll~----~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++....++.+.++....++.+.. ...+ +++|||...++..+...+.+.+.+
T Consensus 72 -i~~~~~lS~G~~~~~~la~~L~~~~~~~~~l--lllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 72 -IFTRLQLSGGEKELSALALILALASLKPRPL--YILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred -ehheeeccccHHHHHHHHHHHHhcCCCCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 11111233444455555555543 4455 899999999988887777766654
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.49 E-value=1.8e-07 Score=76.94 Aligned_cols=28 Identities=43% Similarity=0.561 Sum_probs=26.1
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999863
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.49 E-value=1.3e-07 Score=86.62 Aligned_cols=51 Identities=29% Similarity=0.233 Sum_probs=46.0
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
+..+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.|.|.+.|+.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Ger 195 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGER 195 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecC
Confidence 46789999 9999999999999999999999999999887 889999885443
No 428
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.48 E-value=1.5e-07 Score=77.97 Aligned_cols=29 Identities=45% Similarity=0.571 Sum_probs=27.1
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
-++|++++|+|+||||||||++.|++++.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999999999886
No 429
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.47 E-value=1.5e-07 Score=77.95 Aligned_cols=39 Identities=23% Similarity=0.061 Sum_probs=35.6
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
...+.+|++|++..|++++|+|||||||||++|+++++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999999999999998754
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.45 E-value=3.1e-07 Score=61.35 Aligned_cols=35 Identities=43% Similarity=0.470 Sum_probs=29.4
Q ss_pred ccceeeecC-CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 93 DRQQLLQQK-GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 93 ~~vs~~i~~-Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++..+++.+ |.++.|.|+|||||||++.+|.-++.
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 445677764 56999999999999999999988776
No 431
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.45 E-value=2.9e-06 Score=68.28 Aligned_cols=115 Identities=25% Similarity=0.199 Sum_probs=62.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-------cCCCC------hhhHH-HHHHHHHHH
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-------DLSFK------AEDRV-ENIRRIGEV 166 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-------~~~~~------~~~~~-~~~~~~~~~ 166 (234)
+|.++.|.|++||||||+++.|...+..+ .+.++.+++...... .+.+. ++... ..++.....
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence 47899999999999999999998865411 233343333221110 00011 11111 111111122
Q ss_pred HHHHHhcCceEEEecCcc-cHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchh
Q 026740 167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (234)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~ 219 (234)
...+...+..+++..... ....++.++.+. ...+..++++.|.+.|.+|..+
T Consensus 78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~-~~~~~~v~l~~~~~~l~~R~~~ 130 (175)
T cd00227 78 VAAMARAGANVIADDVFLGRAALQDCWRSFV-GLDVLWVGVRCPGEVAEGRETA 130 (175)
T ss_pred HHHHHhCCCcEEEeeeccCCHHHHHHHHHhc-CCCEEEEEEECCHHHHHHHHHh
Confidence 222334455555443222 344455555543 3556778899999999988864
No 432
>PRK08149 ATP synthase SpaL; Validated
Probab=98.44 E-value=1.9e-07 Score=85.14 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=47.8
Q ss_pred CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCcccc
Q 026740 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCR 142 (234)
Q Consensus 87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v~ 142 (234)
.+..+++++ +++.+||+++|+|+||+|||||+++|++... ++. |.|...|+++.
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-ADVFVIGLIGERGREVT 193 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-CCeEEEEEEeeCCccHH
Confidence 356889999 9999999999999999999999999999776 665 78888888775
No 433
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.43 E-value=2.2e-07 Score=84.88 Aligned_cols=52 Identities=21% Similarity=0.129 Sum_probs=43.0
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCccc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNC 141 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v 141 (234)
+..+++++ |++.+|++++|+|+||+|||||+++|+|+.. ++. |.|-.+++++
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev 196 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREV 196 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHH
Confidence 56799999 9999999999999999999999999999876 654 3344444444
No 434
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.43 E-value=1.9e-07 Score=85.22 Aligned_cols=62 Identities=23% Similarity=0.177 Sum_probs=51.8
Q ss_pred cceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 76 ~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
.++..+++..+ .+..+++++ |++.+|+.++|+|+||+|||||+++|++... ++.|.+.+.|+
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-~d~~vi~~iGe 191 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-ADSNVLVLIGE 191 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-CCEEEEEEECC
Confidence 34445555555 468899999 9999999999999999999999999999887 78888877665
No 435
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.42 E-value=2.7e-07 Score=81.44 Aligned_cols=49 Identities=31% Similarity=0.219 Sum_probs=44.1
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g 138 (234)
+..+++.+ +.+.+|++++|+|+||+|||||+++|++... ++.|.+.+-|
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~~vi~~iG 104 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-ADVNVIALIG 104 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-CCEEEEEEEe
Confidence 56789999 9999999999999999999999999999887 7777776655
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.38 E-value=4.3e-06 Score=70.54 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=32.8
Q ss_pred ecCCEEEEEEcCCCCcHHHH-HHHHHhhcccCCccEEEEcC
Q 026740 99 QQKGCVIWITGLSGSGKSTL-ACALSQALHWRGKLTYILDG 138 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTL-lr~l~gll~~p~~G~i~~~g 138 (234)
+++|+++.|.|+|||||||| ++.+++++. ++...+++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~ 60 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVST 60 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeC
Confidence 89999999999999999999 588888776 5666667654
No 437
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.38 E-value=2.1e-06 Score=89.46 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=34.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHH
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr 120 (234)
.+++++++ ...++++||+|++||+++|+|+||||||||++
T Consensus 600 ~L~l~~~~-----~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKAT-----KHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEeccc-----cCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 45666664 23699999999999999999999999999999
No 438
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.37 E-value=3.7e-07 Score=76.76 Aligned_cols=35 Identities=34% Similarity=0.383 Sum_probs=31.2
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~ 133 (234)
+-.+..+++|.|+||||||||+++|+++++ +.+|.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~-~~~g~ 63 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ-QDGEL 63 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhh-hccCC
Confidence 345688999999999999999999999998 77787
No 439
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.35 E-value=5.7e-07 Score=76.51 Aligned_cols=37 Identities=30% Similarity=0.233 Sum_probs=28.9
Q ss_pred eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE
Q 026740 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135 (234)
Q Consensus 97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~ 135 (234)
+...++ +++|+||||||||||+.+|++++. +..|.++
T Consensus 18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~-~~~~~~r 54 (247)
T cd03275 18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLG-EKSSHLR 54 (247)
T ss_pred ecCCCC-eEEEECCCCCCHHHHHHHHHHHhC-CCccccc
Confidence 333444 999999999999999999999886 5445443
No 440
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.34 E-value=5.9e-07 Score=82.28 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=45.8
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
+..+++++ +.+.+|++++|+|+||+|||||+++|++... ++.|.|.+.|+
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-~d~~vi~~iGe 199 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-CDVNVIALIGE 199 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCeEEEEEEcc
Confidence 56789999 9999999999999999999999999999887 78888888774
No 441
>PLN02796 D-glycerate 3-kinase
Probab=98.34 E-value=2.6e-07 Score=81.81 Aligned_cols=52 Identities=23% Similarity=0.197 Sum_probs=42.2
Q ss_pred cccccceeee---cCCEE-----EEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCcccc
Q 026740 90 DKRDRQQLLQ---QKGCV-----IWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCR 142 (234)
Q Consensus 90 ~~l~~vs~~i---~~Ge~-----~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~ 142 (234)
.+++++++.+ ++|+. ++|.|+||||||||++.|.+++. +. .|.|.+|+..+.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~-~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN-ATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc-ccCCceeEEEECCcccc
Confidence 4677888876 45554 99999999999999999999987 43 588889887654
No 442
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.33 E-value=2.8e-06 Score=65.46 Aligned_cols=109 Identities=23% Similarity=0.283 Sum_probs=59.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc----CCCChhhHHHHHHHHHHHHHHHHhcCceEEE
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----LSFKAEDRVENIRRIGEVAKLFADAGVICIA 179 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (234)
++.++|++||||||+++.+...+. ...++.+++....... .....+........+..........+...++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv 75 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV 75 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 578999999999999999987542 4567666654322110 0011111111122221222222233444444
Q ss_pred ecCcccHHHHHHHHHhCCCCCc--eEEEEeCChhhhhhcc
Q 026740 180 CLISPYRKDRDACRSMLPEGDF--IEVFMDVPLQVCEARD 217 (234)
Q Consensus 180 ~~~~~~~~~~~~~~~ll~~~~l--~~~~ld~P~~~l~~R~ 217 (234)
.........++...+++...+. .-++++.|.+.+.+|.
T Consensus 76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~ 115 (143)
T PF13671_consen 76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERL 115 (143)
T ss_dssp ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHH
Confidence 4334444566677777765553 3467788888887774
No 443
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1.1e-06 Score=79.43 Aligned_cols=66 Identities=17% Similarity=0.040 Sum_probs=52.4
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcCccc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNC 141 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g~~v 141 (234)
-++++|++.+-.+...+.+.|+.|-.|..++++||||-|||||++.|+..-- -|..-.+++..+.+
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv 330 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV 330 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence 3678889888888899999999999999999999999999999999976421 13333455555544
No 444
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.30 E-value=7.5e-07 Score=74.74 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=39.0
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~ 135 (234)
..+.+|+++++.+|++++|+||||+||||+++++++..--+..|.+.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v 64 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV 64 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 45789999999999999999999999999999999933225556544
No 445
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.29 E-value=9.1e-07 Score=79.79 Aligned_cols=52 Identities=17% Similarity=0.011 Sum_probs=46.8
Q ss_pred cceeeceeeecCC-ccccc-----------cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 76 VAKSTNILWHKNS-VDKRD-----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 76 ~~~~~~l~~~~~~-~~~l~-----------~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+.++|+++.|.+ ..+|+ |+++.+.+|+.++|+||+|||||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 5789999999964 45786 9999999999999999999999999999999765
No 446
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.29 E-value=3.5e-06 Score=70.26 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=26.5
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
+-.|+++.-..+.+++|+||||+|||||+|.++.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 4455555433348999999999999999999984
No 447
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.28 E-value=7.5e-07 Score=81.47 Aligned_cols=49 Identities=29% Similarity=0.201 Sum_probs=44.4
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g 138 (234)
+..+++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+.+.|
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-~~~~vi~~iG 180 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-ADVNVIALIG 180 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-CCEEEEEEEc
Confidence 56789999 9999999999999999999999999999887 8888887743
No 448
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.25 E-value=8.8e-07 Score=81.31 Aligned_cols=50 Identities=32% Similarity=0.243 Sum_probs=43.6
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
+..+++.+ |.+.+|+.++|+|+||+|||||+++|++... ++.+.+...|.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-~~~~vi~~iG~ 199 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-ADVNVIALIGE 199 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCEEEEEEEee
Confidence 46788999 9999999999999999999999999999887 77777665443
No 449
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.25 E-value=1.1e-06 Score=79.97 Aligned_cols=52 Identities=27% Similarity=0.214 Sum_probs=46.5
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+..+++++ +.+.+|++++|+|+||+|||||+++|++... ++.|.|.+.|+.-
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-~~~gvi~~~Ger~ 175 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-ADINVIALIGERG 175 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCeEEEEEEccch
Confidence 56789999 9999999999999999999999999999887 7888888777543
No 450
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.25 E-value=1.1e-06 Score=76.45 Aligned_cols=40 Identities=30% Similarity=0.285 Sum_probs=31.7
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcC
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDG 138 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g 138 (234)
.+...+++|.|+||||||||+++|.+++. .+.+|.+.+-+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~ 99 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELIT 99 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEe
Confidence 35568999999999999999999999885 24567765533
No 451
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.22 E-value=1.4e-06 Score=81.30 Aligned_cols=44 Identities=32% Similarity=0.375 Sum_probs=39.3
Q ss_pred eeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 82 l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
+...+|++..++|+.+.+ +|.+++|.|||||||||+++.|+..+
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred EEEEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 455778999999999988 88999999999999999999999654
No 452
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.21 E-value=1e-06 Score=77.53 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.5
Q ss_pred ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026740 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (234)
Q Consensus 95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~ 137 (234)
+++.+..|+.++|+|++|||||||+++|+++++ +..+.+.++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEc
Confidence 457788999999999999999999999999987 777877775
No 453
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.20 E-value=1.2e-06 Score=80.27 Aligned_cols=54 Identities=19% Similarity=0.114 Sum_probs=45.4
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCccccc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCRH 143 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v~~ 143 (234)
+..+++.+ |++.+|++++|+|+||+|||||+++|+++.. ++. |.|.+.|+++..
T Consensus 162 GiraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-~d~iv~g~Igerg~ev~e 218 (455)
T PRK07960 162 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-ADVIVVGLIGERGREVKD 218 (455)
T ss_pred cceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC-CCEEEEEEEEECCeEHHH
Confidence 34555555 9999999999999999999999999999887 664 888888888753
No 454
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.20 E-value=1.9e-06 Score=78.77 Aligned_cols=62 Identities=24% Similarity=0.139 Sum_probs=50.4
Q ss_pred ceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 77 ~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
.+...++..+. +..+++.+ |.+.+|+.++|+|+||+|||||+++|++... ++.|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGer 193 (432)
T PRK06793 131 FEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGER 193 (432)
T ss_pred hheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCC
Confidence 34445555554 45677774 9999999999999999999999999999887 888988877655
No 455
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.20 E-value=1.5e-06 Score=79.20 Aligned_cols=51 Identities=29% Similarity=0.260 Sum_probs=44.4
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
+..+++ .+|++.+|+.++|+|+||+|||||+++|++... ++.|.|.+.|+.
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-~~~gvi~~iGer 177 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-ADVVVIALVGER 177 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC-CCEEEEEEEeee
Confidence 455665 699999999999999999999999999999887 888988877653
No 456
>PRK05922 type III secretion system ATPase; Validated
Probab=98.20 E-value=2e-06 Score=78.63 Aligned_cols=50 Identities=26% Similarity=0.261 Sum_probs=42.6
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
+..+++.+ +.+.+|+.++|+|+||+|||||+++|++... +..|.+..-|.
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-~d~gvi~liGe 193 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-STINVIALIGE 193 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-CCceEEEEeCC
Confidence 45667775 9999999999999999999999999999877 78888765544
No 457
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.20 E-value=1.4e-06 Score=72.71 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=32.7
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
..+.+|++++..+ ++++|+|||||||||++|++++..
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 3478899999887 999999999999999999998754
No 458
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.18 E-value=1.8e-06 Score=90.02 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=43.4
Q ss_pred eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026740 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (234)
Q Consensus 79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~ 137 (234)
..++++.+.....++++||++++|++++|+|+||||||||+..+ ++ + .|++.+.
T Consensus 938 ~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~--~-~G~~~~~ 991 (1809)
T PRK00635 938 PADITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LY--A-AGNIAYA 991 (1809)
T ss_pred cceEEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HH--h-hccEeee
Confidence 45667776656679999999999999999999999999988877 33 2 5777643
No 459
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.18 E-value=1.9e-06 Score=78.43 Aligned_cols=57 Identities=25% Similarity=0.141 Sum_probs=46.9
Q ss_pred ceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 81 ~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
.++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|++... ++.+.+...|+
T Consensus 116 ~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-~~~~vi~~iGe 173 (411)
T TIGR03496 116 PIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-ADVVVVGLIGE 173 (411)
T ss_pred CcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEEec
Confidence 3444453 57788888 9999999999999999999999999999887 77777665554
No 460
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.18 E-value=1.4e-06 Score=79.92 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=43.1
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCcccc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCR 142 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v~ 142 (234)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+++.. ++. |.|-..+.+++
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~-~dv~V~g~Ig~rg~ev~ 210 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE-ADIIVVGLIGERGREVK 210 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCEEEEEEeCcCcHhHH
Confidence 56889999 9999999999999999999999999999776 542 44445554443
No 461
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.18 E-value=1.4e-06 Score=79.71 Aligned_cols=50 Identities=26% Similarity=0.170 Sum_probs=42.1
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g 138 (234)
+..+++++ |++.+|+.++|+|+||+|||||+++|+++.+..+.+.|.+.|
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 46788887 999999999999999999999999999987424557777744
No 462
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.17 E-value=1.9e-06 Score=72.27 Aligned_cols=37 Identities=24% Similarity=0.176 Sum_probs=33.5
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
...+.+|+++++.++++++|.|||||||||++++++-
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH
Confidence 3467899999999999999999999999999999863
No 463
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.17 E-value=1.5e-06 Score=72.82 Aligned_cols=24 Identities=42% Similarity=0.429 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|.|+||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999986
No 464
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.16 E-value=2.2e-06 Score=75.66 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=36.7
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
-.+|++++++|||||||||++..|++.+. +..+.|.+.+.|.
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~ 152 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDT 152 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCc
Confidence 36799999999999999999999999987 7778888776665
No 465
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.16 E-value=2.1e-06 Score=78.54 Aligned_cols=52 Identities=29% Similarity=0.185 Sum_probs=45.3
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+..+++++ +++.+|++++|+|+||+|||||+++|++... +..+.|...|+.-
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-~~v~vi~~iGerg 195 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-APIKVVALIGERG 195 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-CCEEEEEeeCccc
Confidence 46789999 9999999999999999999999999999776 6778887766553
No 466
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=2.2e-06 Score=85.04 Aligned_cols=42 Identities=29% Similarity=0.233 Sum_probs=36.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHH
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l 122 (234)
.+++++++. ..|+++||+|++|++++|+|+||||||||++-.
T Consensus 612 ~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~ 653 (924)
T TIGR00630 612 FLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLINDT 653 (924)
T ss_pred eEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 567777752 359999999999999999999999999999843
No 467
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.12 E-value=2.5e-05 Score=67.98 Aligned_cols=114 Identities=23% Similarity=0.234 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc-----CCCChhhHHHHHHHHHHHHHHHHhcCceE
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGVIC 177 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (234)
.++.++|++||||||+++.|+..+. +.+.++.++++...... ..+......................+...
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 78 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSV 78 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 5788999999999999999988652 45677776665322110 11111111000111111111111223333
Q ss_pred EEecCcccHHHHHHHHHhCCCC--CceEEEEeCChhhhhhcchhh
Q 026740 178 IACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKG 220 (234)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ll~~~--~l~~~~ld~P~~~l~~R~~~~ 220 (234)
+..........++...+++... .+..++++.|.+.+.+|..+.
T Consensus 79 Iid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R 123 (300)
T PHA02530 79 IISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR 123 (300)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence 4433333344444455444333 334477889999998887543
No 468
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.11 E-value=2.1e-05 Score=65.52 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=27.6
Q ss_pred ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++.+++.+| +.+|+|+||||||||+.+|.-.+.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~ 48 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLG 48 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556666665 678999999999999999987663
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.11 E-value=1.9e-06 Score=79.80 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=35.0
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G 132 (234)
.++++.++.+.+|.+++++||||+||||++..|++.+. ...|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G 285 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-MRHG 285 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-HhcC
Confidence 34566777788999999999999999999999999875 4433
No 470
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.11 E-value=2.7e-06 Score=83.27 Aligned_cols=31 Identities=26% Similarity=0.150 Sum_probs=28.9
Q ss_pred ceeeecCC-EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 95 QQLLQQKG-CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 95 vs~~i~~G-e~~~liG~nGsGKSTLlr~l~gl 125 (234)
+|+++..+ ++++|+||||+|||||+|+|++.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 68888877 89999999999999999999998
No 471
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.10 E-value=2.2e-06 Score=68.93 Aligned_cols=26 Identities=50% Similarity=0.547 Sum_probs=23.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
|++++|+||||||||||++.|++.+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999654
No 472
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.10 E-value=5.2e-06 Score=85.81 Aligned_cols=48 Identities=21% Similarity=0.101 Sum_probs=41.3
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+.+..|++..| +++|+|+|||||||++++|++++. +..|.+.+++.+.
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-~~~~~~~f~~~~~ 65 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTE 65 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-CCCCeEEECCccc
Confidence 45567888876 999999999999999999999998 7888899887653
No 473
>COG0645 Predicted kinase [General function prediction only]
Probab=98.09 E-value=4.8e-05 Score=60.67 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=73.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc--------cCCCChhhHHHHHHHHHHHHHHHHhc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR--------DLSFKAEDRVENIRRIGEVAKLFADA 173 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (234)
++.+.+.|.+|+||||+++.|..++ |.+.+..+.+++.++. .--|++..-...+..+...+......
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~l-----gA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELL-----GAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhc-----CceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 3567889999999999999999865 3455555555543332 01134433333344444556666666
Q ss_pred CceEEEecCcccHHHHHHHHHhCCCCCce--EEEEeCChhhhhhcc
Q 026740 174 GVICIACLISPYRKDRDACRSMLPEGDFI--EVFMDVPLQVCEARD 217 (234)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~ld~P~~~l~~R~ 217 (234)
+..++.......+..|+.++.+....++. .+.++.|.+.+..|.
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl 121 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRL 121 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHH
Confidence 77677666666677888888888887664 456788888886654
No 474
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.09 E-value=4.6e-06 Score=68.94 Aligned_cols=28 Identities=43% Similarity=0.558 Sum_probs=25.9
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++.+++|.|+||||||||++.|++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999999874
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.08 E-value=2.7e-06 Score=69.70 Aligned_cols=24 Identities=46% Similarity=0.570 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|.|+||||||||+++|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999873
No 476
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.08 E-value=2.6e-06 Score=79.50 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=49.8
Q ss_pred eeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 83 ~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+--+|...+.+.+++.+..|+.+.|+||||||||||++.|.++++ |.+|.+.+++..+
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp-~~~~~~~le~~~i 249 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILP-PLTNEEAIETARI 249 (499)
T ss_pred HHhcCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccC-CCCCcEEEecccc
Confidence 334567788999999999999999999999999999999999998 7888877765554
No 477
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.06 E-value=3.9e-06 Score=67.84 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=38.5
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh--------cccCCccEEEEcCccc
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--------LHWRGKLTYILDGDNC 141 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl--------l~~p~~G~i~~~g~~v 141 (234)
+++++++..+++++ +|+|++|||||||++.+.+- .. +..+.+.+++..+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~-~~~~~i~~~~~~~ 65 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLH-PTSEELTIGNIKF 65 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccC-cceEEEEECCEEE
Confidence 47788988888876 99999999999999999872 22 4556777776543
No 478
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.06 E-value=4.4e-06 Score=72.27 Aligned_cols=36 Identities=33% Similarity=0.384 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+++|+|+||||||||+++|++++. +..+.+.. .+++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-~~~~~vi~-~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-SDLVTVIC-LDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-CCceEEEE-Cccc
Confidence 579999999999999999999987 55554433 3344
No 479
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.05 E-value=9e-06 Score=65.90 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=24.3
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+....+.+.+|+||||||||+++.+|+-.+.
T Consensus 16 ~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 16 TVVGGSNSFNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred EEecCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 33333333899999999999999999976553
No 480
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.03 E-value=4e-06 Score=67.86 Aligned_cols=35 Identities=34% Similarity=0.320 Sum_probs=28.4
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++++.+++.+| +++|+|+||+||||++.+|.-.+.
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 46677788776 999999999999999999987774
No 481
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.03 E-value=1.1e-05 Score=73.39 Aligned_cols=51 Identities=25% Similarity=0.156 Sum_probs=37.3
Q ss_pred ceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE
Q 026740 81 NILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133 (234)
Q Consensus 81 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~ 133 (234)
++..+||.. -.|.++ -...+|++++|+|+||-||||.+|+|+|.+. |.-|.
T Consensus 79 e~vHRYg~NgFkL~~L-P~pr~G~V~GilG~NGiGKsTalkILaGel~-PNLG~ 130 (591)
T COG1245 79 EVVHRYGVNGFKLYRL-PTPRPGKVVGILGPNGIGKSTALKILAGELK-PNLGR 130 (591)
T ss_pred cceeeccCCceEEecC-CCCCCCcEEEEEcCCCccHHHHHHHHhCccc-cCCCC
Confidence 345666522 122222 1367999999999999999999999999998 76553
No 482
>PRK01889 GTPase RsgA; Reviewed
Probab=98.02 E-value=3.5e-06 Score=75.56 Aligned_cols=47 Identities=28% Similarity=0.161 Sum_probs=41.0
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
++.+...+.+|++++|+|+||+|||||+++|+|... +..|.|.+++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~ 231 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDS 231 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCC
Confidence 455555688999999999999999999999999888 88999998764
No 483
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.02 E-value=5.9e-06 Score=75.51 Aligned_cols=39 Identities=26% Similarity=0.230 Sum_probs=35.0
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+..+++.+ +.+.+|++++|+|+||+|||||+++|++...
T Consensus 149 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 149 GVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred cceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 45677777 9999999999999999999999999999765
No 484
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.02 E-value=8.7e-06 Score=66.25 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026740 104 VIWITGLSGSGKSTLACALS 123 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~ 123 (234)
++.|+||||+||||++|.++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999998
No 485
>PRK07261 topology modulation protein; Provisional
Probab=98.01 E-value=3e-05 Score=62.37 Aligned_cols=24 Identities=63% Similarity=0.657 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++|+|+||||||||++.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 486
>PRK06820 type III secretion system ATPase; Validated
Probab=98.00 E-value=7.6e-06 Score=75.00 Aligned_cols=45 Identities=27% Similarity=0.208 Sum_probs=39.9
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY 134 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i 134 (234)
+..+++.+ +++.+||.++|+|+||+|||||+++|++... ++.+.+
T Consensus 150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~-~dv~V~ 194 (440)
T PRK06820 150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA-ADVMVL 194 (440)
T ss_pred CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCC-CCEEEE
Confidence 57889999 9999999999999999999999999999776 666444
No 487
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=6.6e-06 Score=79.72 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=37.4
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEc
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILD 137 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~ 137 (234)
++++.++.+.+|++++++||||+||||++..|++.+. ...| .|.+-
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~li 221 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALL 221 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEe
Confidence 5677888888999999999999999999999999875 3334 45443
No 488
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.96 E-value=9.7e-06 Score=74.18 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=37.8
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~ 131 (234)
+..+++++ +++.+|++++|+|+||+|||||+++|++... ++-
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~-~dv 190 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE-VDV 190 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC-CCE
Confidence 46789999 9999999999999999999999999999776 543
No 489
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.95 E-value=1.4e-05 Score=59.85 Aligned_cols=41 Identities=44% Similarity=0.558 Sum_probs=31.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
.+..+.|+||+||||||+++.|+..+.....+.++++....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 36789999999999999999999988732225677766544
No 490
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.94 E-value=5.8e-05 Score=64.16 Aligned_cols=110 Identities=25% Similarity=0.280 Sum_probs=56.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHH-H-HHHHHHHhcCceEEEec
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI-G-EVAKLFADAGVICIACL 181 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 181 (234)
++.++|++||||||+++.|+..+.......+.++++.++.... .+.. ......+.. . .+...+ ..+...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~---~~~~-~~e~~~~~~~~~~i~~~l-~~~~~VI~D~ 75 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP---VWKE-KYEEFIRDSTLYLIKTAL-KNKYSVIVDD 75 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH---HhhH-HhHHHHHHHHHHHHHHHH-hCCCeEEEec
Confidence 3789999999999999999987752233456666655542110 0110 111111110 0 111111 1223333333
Q ss_pred CcccHHHHHHHHHhCCCC--CceEEEEeCChhhhhhcch
Q 026740 182 ISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 182 ~~~~~~~~~~~~~ll~~~--~l~~~~ld~P~~~l~~R~~ 218 (234)
.......+.....++... ....++++.|.+.|.+|..
T Consensus 76 ~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~ 114 (249)
T TIGR03574 76 TNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNI 114 (249)
T ss_pred cchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHH
Confidence 332333333333333322 3344788999999988863
No 491
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.94 E-value=1.3e-05 Score=64.69 Aligned_cols=39 Identities=26% Similarity=0.137 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDN 140 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~ 140 (234)
...+++|+|+||||||||++.|.+.+. +. -|.|...++.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~-~~g~~vg~Ik~~~~~ 46 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC-ARGIRPGLIKHTHHD 46 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh-hcCCeEEEEEEcCCC
Confidence 344899999999999999999999887 43 3888886653
No 492
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.94 E-value=4e-05 Score=59.56 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g 138 (234)
++.|.|+||+||||+++.+++... +..+.+.+-+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-TKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-hcCCEEEEEE
Confidence 478999999999999999999876 5556665543
No 493
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.92 E-value=1.3e-05 Score=65.93 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
++.|.||+||||||+++.|.+.+..+..|.|....+++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 68999999999999999999887634456665554443
No 494
>PRK06761 hypothetical protein; Provisional
Probab=97.92 E-value=0.00015 Score=62.92 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=63.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCCccE--EEEcCcccc-ccccccCCCChhhHHHHHHHHHHHHHHHHh----cC
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLT--YILDGDNCR-HGLNRDLSFKAEDRVENIRRIGEVAKLFAD----AG 174 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~--i~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 174 (234)
+.+++|.|++||||||+++.|+..+. ...-. +..++.... ........++..++.++++....+...+.. .+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~-~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g 81 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILS-QNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKG 81 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC-cCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 45899999999999999999998775 22111 233343211 111122346777777777666555443332 22
Q ss_pred ceEEEecCcccHHHHHHHHH-hCCCCCceEEEEeCChhhhhhcc
Q 026740 175 VICIACLISPYRKDRDACRS-MLPEGDFIEVFMDVPLQVCEARD 217 (234)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~-ll~~~~l~~~~ld~P~~~l~~R~ 217 (234)
...++.+.......++...+ .+....+.+++ +-|.+.+.+|-
T Consensus 82 ~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~ 124 (282)
T PRK06761 82 DYYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELI 124 (282)
T ss_pred CeEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHH
Confidence 23344444444444444443 33333344344 78888777665
No 495
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.91 E-value=1.5e-05 Score=72.42 Aligned_cols=40 Identities=28% Similarity=0.232 Sum_probs=34.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNC 141 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v 141 (234)
+.-+++|.|++|||||||++.|.+++. +. .|.|.+|+..+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~-~~g~~vgvISiDDfYL 253 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR-VTGRKSATLSIDDFYL 253 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc-ccCCceEEEEECCccC
Confidence 458999999999999999999999886 44 68888888665
No 496
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.91 E-value=4.8e-05 Score=59.40 Aligned_cols=38 Identities=32% Similarity=0.245 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccC-CccEEEEcCccc
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNC 141 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p-~~G~i~~~g~~v 141 (234)
.+.|+|++|||||||+++|.|..... ..-.+.+.+.-+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~I 41 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTI 41 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEE
Confidence 57899999999999999999965312 123455554434
No 497
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.90 E-value=1.4e-05 Score=69.34 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=36.5
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
-|.-+.+.+++|+|++|||||||++.+.+.+. ...+.+.+.|+.
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~-~~~~~~VI~gD~ 141 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLK-DSVPCAVIEGDQ 141 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc-cCCCEEEECCCc
Confidence 35567899999999999999999999999876 556777777653
No 498
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.88 E-value=1.4e-05 Score=75.41 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=33.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
.--+++|.||||||||||++.|++++ +..|.|.+||..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL--p~vgvIsmDdy~ 101 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVISMDNYN 101 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC--CCcEEEEEccee
Confidence 34689999999999999999999986 567899998864
No 499
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.88 E-value=1.7e-05 Score=62.91 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhh----cccCCcc----EEEEcCccc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQA----LHWRGKL----TYILDGDNC 141 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gl----l~~p~~G----~i~~~g~~v 141 (234)
.-.++|+|++|||||||++.|.+. .. |+.| .+.++|..+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~-~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHIT-PTQGFNIKTVQSDGFKL 60 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccC-CCCCcceEEEEECCEEE
Confidence 345899999999999999999996 33 5667 677766554
No 500
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.87 E-value=1.4e-05 Score=70.08 Aligned_cols=39 Identities=36% Similarity=0.342 Sum_probs=35.9
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..++++++++..++++++|+|++|||||||+..+.+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999775
Done!