Query 026740
Match_columns 234
No_of_seqs 380 out of 2559
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 20:58:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pcj_A ABC transporter, lipopr 99.9 3.9E-24 1.3E-28 178.3 6.9 148 76-226 4-184 (224)
2 3tif_A Uncharacterized ABC tra 99.9 4.2E-24 1.4E-28 179.4 6.8 148 76-226 1-189 (235)
3 3tui_C Methionine import ATP-b 99.9 4.1E-24 1.4E-28 189.5 6.1 150 74-226 22-207 (366)
4 3rlf_A Maltose/maltodextrin im 99.9 4E-24 1.4E-28 190.6 4.7 148 76-226 3-177 (381)
5 4g1u_C Hemin import ATP-bindin 99.9 5.9E-24 2E-28 181.6 5.1 146 75-226 10-191 (266)
6 3fvq_A Fe(3+) IONS import ATP- 99.9 7.4E-23 2.5E-27 181.3 10.8 147 76-225 4-181 (359)
7 3gfo_A Cobalt import ATP-bindi 99.9 2.3E-23 8E-28 178.7 6.6 149 75-226 6-187 (275)
8 1v43_A Sugar-binding transport 99.9 4.9E-23 1.7E-27 183.4 7.5 148 76-226 11-185 (372)
9 2yyz_A Sugar ABC transporter, 99.9 3.3E-23 1.1E-27 183.8 6.1 148 76-226 3-177 (359)
10 1ji0_A ABC transporter; ATP bi 99.9 4.2E-22 1.4E-26 167.6 12.3 149 75-226 5-183 (240)
11 2it1_A 362AA long hypothetical 99.9 4.2E-23 1.4E-27 183.2 6.5 148 76-226 3-177 (362)
12 1z47_A CYSA, putative ABC-tran 99.9 4E-23 1.4E-27 182.9 6.1 149 75-226 13-189 (355)
13 1sgw_A Putative ABC transporte 99.9 4.1E-22 1.4E-26 165.0 11.1 146 76-226 10-177 (214)
14 2olj_A Amino acid ABC transpor 99.9 7E-22 2.4E-26 168.5 12.1 148 76-226 24-203 (263)
15 1vpl_A ABC transporter, ATP-bi 99.9 1.2E-21 4.1E-26 166.4 12.9 150 74-226 13-190 (256)
16 1g6h_A High-affinity branched- 99.9 6.9E-22 2.3E-26 167.9 11.3 150 75-227 6-198 (257)
17 2ihy_A ABC transporter, ATP-bi 99.9 4E-22 1.4E-26 171.4 9.3 150 74-226 19-205 (279)
18 1b0u_A Histidine permease; ABC 99.9 1E-21 3.5E-26 167.3 11.6 148 76-226 6-197 (262)
19 2ff7_A Alpha-hemolysin translo 99.9 1.8E-22 6.1E-27 170.6 6.2 149 76-227 7-190 (247)
20 3nh6_A ATP-binding cassette SU 99.9 1.1E-22 3.6E-27 177.0 4.5 149 76-227 53-235 (306)
21 2ixe_A Antigen peptide transpo 99.9 3.1E-22 1E-26 171.4 6.7 150 75-227 15-201 (271)
22 1mv5_A LMRA, multidrug resista 99.9 1.4E-22 4.7E-27 170.9 4.4 148 77-227 2-184 (243)
23 1oxx_K GLCV, glucose, ABC tran 99.9 6.3E-22 2.2E-26 175.3 8.8 148 76-226 3-184 (353)
24 1g29_1 MALK, maltose transport 99.9 8.6E-22 3E-26 175.5 9.7 148 76-226 3-183 (372)
25 3d31_A Sulfate/molybdate ABC t 99.9 1.9E-21 6.5E-26 171.8 11.1 146 77-226 2-171 (348)
26 2d2e_A SUFC protein; ABC-ATPas 99.8 3.7E-21 1.3E-25 162.8 10.6 149 76-227 3-188 (250)
27 3gd7_A Fusion complex of cysti 99.8 1E-21 3.5E-26 175.9 6.7 149 75-227 18-200 (390)
28 2yz2_A Putative ABC transporte 99.8 1.2E-20 4.2E-25 161.0 11.4 148 76-226 2-182 (266)
29 2zu0_C Probable ATP-dependent 99.8 1.1E-20 3.6E-25 161.5 11.0 150 75-227 19-209 (267)
30 2onk_A Molybdate/tungstate ABC 99.8 9E-21 3.1E-25 159.6 10.2 144 77-226 2-170 (240)
31 2pjz_A Hypothetical protein ST 99.8 2.7E-20 9.3E-25 158.6 11.1 146 77-227 2-173 (263)
32 3uie_A Adenylyl-sulfate kinase 99.8 9E-20 3.1E-24 148.6 13.6 151 80-232 3-155 (200)
33 2ghi_A Transport protein; mult 99.8 3E-20 1E-24 158.1 10.5 149 75-227 16-200 (260)
34 2pze_A Cystic fibrosis transme 99.8 3E-20 1E-24 155.2 9.2 145 76-225 6-173 (229)
35 2qi9_C Vitamin B12 import ATP- 99.8 4.9E-21 1.7E-25 162.0 3.7 144 76-227 4-178 (249)
36 2cbz_A Multidrug resistance-as 99.8 2.8E-20 9.7E-25 156.2 8.0 146 76-226 3-171 (237)
37 2nq2_C Hypothetical ABC transp 99.8 1E-19 3.6E-24 154.2 10.1 148 76-227 4-173 (253)
38 3qf4_A ABC transporter, ATP-bi 99.8 4.4E-20 1.5E-24 173.5 6.0 149 76-227 341-524 (587)
39 3qf4_B Uncharacterized ABC tra 99.8 4.6E-20 1.6E-24 173.7 5.7 149 76-227 354-536 (598)
40 3b5x_A Lipid A export ATP-bind 99.8 3.7E-20 1.2E-24 173.8 4.9 150 75-227 340-525 (582)
41 4a82_A Cystic fibrosis transme 99.8 5.1E-20 1.7E-24 172.7 3.6 148 76-226 339-521 (578)
42 3b60_A Lipid A export ATP-bind 99.8 5.8E-19 2E-23 165.7 9.1 150 75-227 340-525 (582)
43 2yl4_A ATP-binding cassette SU 99.8 8.6E-19 2.9E-23 164.9 8.3 148 77-227 342-528 (595)
44 2bbs_A Cystic fibrosis transme 99.7 2.7E-18 9.2E-23 148.2 7.3 144 75-225 39-202 (290)
45 4f4c_A Multidrug resistance pr 99.7 1.8E-18 6.3E-23 175.2 4.4 148 76-227 1076-1262(1321)
46 4f4c_A Multidrug resistance pr 99.7 1E-17 3.5E-22 169.8 8.1 147 76-226 415-598 (1321)
47 3g5u_A MCG1178, multidrug resi 99.7 4.7E-18 1.6E-22 171.8 4.7 147 76-225 387-569 (1284)
48 3g5u_A MCG1178, multidrug resi 99.7 8.4E-18 2.9E-22 170.0 3.3 149 76-227 1030-1216(1284)
49 3ozx_A RNAse L inhibitor; ATP 99.7 1.1E-16 3.7E-21 148.9 9.2 146 74-226 267-429 (538)
50 1yqt_A RNAse L inhibitor; ATP- 99.6 5.1E-17 1.7E-21 151.2 3.2 143 80-226 25-202 (538)
51 3bk7_A ABC transporter ATP-bin 99.6 4.8E-16 1.6E-20 146.4 9.8 149 74-227 355-516 (607)
52 1yqt_A RNAse L inhibitor; ATP- 99.6 5.1E-16 1.8E-20 144.4 9.3 147 75-226 286-445 (538)
53 2iw3_A Elongation factor 3A; a 99.6 2.6E-16 8.8E-21 154.1 7.4 63 75-138 670-734 (986)
54 3bk7_A ABC transporter ATP-bin 99.6 5.5E-17 1.9E-21 152.8 2.5 143 80-226 95-272 (607)
55 3cr8_A Sulfate adenylyltranfer 99.6 3.3E-15 1.1E-19 139.1 10.0 136 97-233 364-502 (552)
56 1htw_A HI0065; nucleotide-bind 99.5 3.8E-16 1.3E-20 123.2 -0.9 64 77-142 8-71 (158)
57 3ux8_A Excinuclease ABC, A sub 99.5 6.5E-15 2.2E-19 140.2 6.7 137 88-227 30-249 (670)
58 3j16_B RLI1P; ribosome recycli 99.5 2.4E-15 8E-20 141.6 3.5 144 80-227 81-266 (608)
59 4gp7_A Metallophosphoesterase; 99.5 3.5E-15 1.2E-19 118.7 2.8 102 94-217 1-118 (171)
60 2iw3_A Elongation factor 3A; a 99.5 8.2E-14 2.8E-18 136.5 11.5 147 76-227 435-593 (986)
61 3j16_B RLI1P; ribosome recycli 99.5 1.1E-13 3.8E-18 130.2 10.7 140 80-226 350-511 (608)
62 3ozx_A RNAse L inhibitor; ATP 99.4 8.6E-14 2.9E-18 129.4 5.4 143 81-227 4-183 (538)
63 3ux8_A Excinuclease ABC, A sub 99.4 3.9E-13 1.3E-17 127.9 9.2 36 88-123 334-369 (670)
64 3b85_A Phosphate starvation-in 99.4 1.2E-14 3.9E-19 119.6 -3.5 130 84-227 8-145 (208)
65 2pez_A Bifunctional 3'-phospho 99.4 1E-11 3.5E-16 98.7 12.6 129 100-230 3-135 (179)
66 2obl_A ESCN; ATPase, hydrolase 99.3 4.5E-13 1.5E-17 118.2 3.9 64 75-140 44-108 (347)
67 1tq4_A IIGP1, interferon-induc 99.3 8E-14 2.7E-18 125.5 -1.3 132 88-227 35-211 (413)
68 2dpy_A FLII, flagellum-specifi 99.3 5.4E-13 1.8E-17 121.1 3.5 63 75-139 130-193 (438)
69 1m7g_A Adenylylsulfate kinase; 99.3 7.7E-12 2.6E-16 102.2 9.9 138 91-229 14-161 (211)
70 2pt7_A CAG-ALFA; ATPase, prote 99.3 7.7E-13 2.6E-17 115.9 3.8 51 89-140 158-208 (330)
71 2v9p_A Replication protein E1; 99.3 2.3E-13 7.7E-18 118.0 -0.1 58 76-138 101-158 (305)
72 2yvu_A Probable adenylyl-sulfa 99.3 4.6E-11 1.6E-15 95.4 12.5 134 96-230 7-143 (186)
73 3euj_A Chromosome partition pr 99.3 1.7E-12 5.9E-17 118.8 3.4 53 89-143 17-69 (483)
74 1z6g_A Guanylate kinase; struc 99.2 2.3E-12 7.9E-17 106.2 3.6 49 89-142 10-58 (218)
75 2qm8_A GTPase/ATPase; G protei 99.2 4.9E-13 1.7E-17 117.5 -0.7 67 75-142 28-94 (337)
76 2eyu_A Twitching motility prot 99.2 1.6E-12 5.6E-17 110.3 2.6 60 76-142 5-65 (261)
77 4aby_A DNA repair protein RECN 99.2 9.1E-12 3.1E-16 111.5 7.2 39 88-127 47-85 (415)
78 1x6v_B Bifunctional 3'-phospho 99.2 4.6E-11 1.6E-15 112.5 12.1 153 80-232 26-184 (630)
79 1tf7_A KAIC; homohexamer, hexa 99.2 2.5E-12 8.6E-17 119.1 3.4 65 76-141 12-79 (525)
80 2npi_A Protein CLP1; CLP1-PCF1 99.2 4.2E-13 1.4E-17 122.5 -1.9 59 74-139 116-176 (460)
81 2vf7_A UVRA2, excinuclease ABC 99.2 5.3E-12 1.8E-16 122.4 5.5 47 75-126 501-548 (842)
82 1m8p_A Sulfate adenylyltransfe 99.2 5.4E-11 1.8E-15 111.3 11.9 135 99-233 393-529 (573)
83 2ehv_A Hypothetical protein PH 99.2 2E-11 6.9E-16 101.2 7.8 60 77-140 7-69 (251)
84 4eun_A Thermoresistant glucoki 99.2 6.8E-11 2.3E-15 95.7 10.7 119 92-217 19-142 (200)
85 3b9q_A Chloroplast SRP recepto 99.2 5.8E-12 2E-16 109.1 3.1 58 84-142 82-139 (302)
86 1znw_A Guanylate kinase, GMP k 99.2 8.1E-11 2.8E-15 95.8 8.9 36 90-127 10-45 (207)
87 1sq5_A Pantothenate kinase; P- 99.1 4.6E-12 1.6E-16 109.8 0.7 65 75-141 36-123 (308)
88 2gza_A Type IV secretion syste 99.1 5.4E-12 1.8E-16 111.8 0.8 61 78-139 137-211 (361)
89 2jeo_A Uridine-cytidine kinase 99.1 2.5E-11 8.5E-16 101.5 4.1 43 85-127 8-50 (245)
90 4a74_A DNA repair and recombin 99.1 1.3E-10 4.5E-15 95.1 8.0 43 98-140 21-69 (231)
91 2r6f_A Excinuclease ABC subuni 99.1 1.8E-10 6.3E-15 112.4 9.3 44 75-123 628-671 (972)
92 2og2_A Putative signal recogni 99.1 5.3E-11 1.8E-15 105.3 4.5 49 93-142 148-196 (359)
93 2ygr_A Uvrabc system protein A 99.1 2.4E-10 8E-15 112.0 9.2 44 75-123 646-689 (993)
94 1s96_A Guanylate kinase, GMP k 99.1 1.3E-10 4.4E-15 96.1 5.6 47 95-142 9-57 (219)
95 2yhs_A FTSY, cell division pro 99.1 7.6E-11 2.6E-15 108.0 4.4 50 92-142 283-332 (503)
96 1pui_A ENGB, probable GTP-bind 99.0 1.7E-10 6E-15 93.1 5.9 57 76-136 3-64 (210)
97 1knq_A Gluconate kinase; ALFA/ 99.0 2E-09 6.8E-14 84.8 11.4 111 100-217 6-121 (175)
98 3lnc_A Guanylate kinase, GMP k 99.0 8.3E-11 2.8E-15 97.2 2.6 38 89-126 14-52 (231)
99 1p9r_A General secretion pathw 99.0 5.6E-11 1.9E-15 107.2 1.5 64 76-142 143-206 (418)
100 3nwj_A ATSK2; P loop, shikimat 99.0 3.7E-11 1.3E-15 101.3 0.3 53 75-127 16-73 (250)
101 3aez_A Pantothenate kinase; tr 99.0 3.4E-11 1.2E-15 104.7 -0.2 54 76-132 43-119 (312)
102 1lw7_A Transcriptional regulat 99.0 2.7E-10 9.3E-15 100.7 5.3 46 91-137 157-208 (365)
103 1zp6_A Hypothetical protein AT 99.0 2.9E-10 1E-14 90.7 5.0 42 98-142 5-46 (191)
104 1qhl_A Protein (cell division 99.0 1E-11 3.5E-16 103.3 -4.2 59 75-142 8-66 (227)
105 1ye8_A Protein THEP1, hypothet 99.0 5.4E-11 1.8E-15 95.2 -0.1 113 104-227 2-128 (178)
106 2qag_B Septin-6, protein NEDD5 99.0 1.1E-10 3.8E-15 105.3 1.8 49 76-126 16-66 (427)
107 1rj9_A FTSY, signal recognitio 99.0 2.2E-10 7.4E-15 99.3 3.1 42 101-143 101-142 (304)
108 2w0m_A SSO2452; RECA, SSPF, un 98.9 3.8E-10 1.3E-14 92.2 4.0 50 88-138 8-58 (235)
109 2gks_A Bifunctional SAT/APS ki 98.9 7.1E-09 2.4E-13 96.5 13.0 133 100-232 370-502 (546)
110 3pih_A Uvrabc system protein A 98.9 2.8E-09 9.5E-14 104.3 10.0 46 181-226 806-852 (916)
111 3tr0_A Guanylate kinase, GMP k 98.9 7.3E-10 2.5E-14 89.2 4.5 42 96-142 1-42 (205)
112 2qnr_A Septin-2, protein NEDD5 98.9 4.7E-10 1.6E-14 96.9 2.7 54 80-141 2-56 (301)
113 3c8u_A Fructokinase; YP_612366 98.9 7.8E-10 2.7E-14 90.0 3.4 44 99-142 19-64 (208)
114 3e70_C DPA, signal recognition 98.9 1.9E-09 6.5E-14 94.3 5.6 45 98-143 125-169 (328)
115 1e69_A Chromosome segregation 98.9 2.4E-09 8.1E-14 93.1 6.0 32 94-126 17-48 (322)
116 2bdt_A BH3686; alpha-beta prot 98.8 2.9E-08 9.8E-13 79.1 11.5 38 102-143 2-39 (189)
117 1cr0_A DNA primase/helicase; R 98.8 8.3E-10 2.8E-14 94.5 2.4 47 89-136 22-69 (296)
118 3sop_A Neuronal-specific septi 98.8 1.3E-09 4.3E-14 92.9 3.4 38 104-142 4-41 (270)
119 3thx_A DNA mismatch repair pro 98.8 4.7E-09 1.6E-13 103.0 7.6 35 88-122 648-682 (934)
120 2oap_1 GSPE-2, type II secreti 98.8 7E-10 2.4E-14 102.4 1.5 51 89-140 247-297 (511)
121 2x8a_A Nuclear valosin-contain 98.8 2.3E-09 8E-14 91.3 4.5 54 84-142 28-81 (274)
122 3thx_B DNA mismatch repair pro 98.8 4.2E-09 1.4E-13 103.1 6.6 39 88-126 659-697 (918)
123 3jvv_A Twitching mobility prot 98.8 1.4E-08 4.8E-13 89.7 9.1 61 80-141 92-162 (356)
124 1tf7_A KAIC; homohexamer, hexa 98.8 7.8E-09 2.7E-13 95.6 7.6 130 76-225 257-400 (525)
125 1u0l_A Probable GTPase ENGC; p 98.8 1.4E-09 4.9E-14 93.7 2.2 46 97-143 164-212 (301)
126 1lvg_A Guanylate kinase, GMP k 98.8 3.5E-09 1.2E-13 85.7 4.3 28 100-127 2-29 (198)
127 1ewq_A DNA mismatch repair pro 98.8 3.7E-09 1.3E-13 101.8 4.6 45 87-134 564-608 (765)
128 2qag_C Septin-7; cell cycle, c 98.8 3.6E-09 1.2E-13 95.4 3.9 46 76-127 11-56 (418)
129 1pzn_A RAD51, DNA repair and r 98.7 8.8E-09 3E-13 90.7 6.0 52 90-141 118-176 (349)
130 3kta_A Chromosome segregation 98.7 1.5E-08 5.2E-13 80.2 6.6 38 93-132 18-55 (182)
131 2ewv_A Twitching motility prot 98.7 3E-09 1E-13 94.5 2.6 48 91-141 127-175 (372)
132 1n0w_A DNA repair protein RAD5 98.7 1.6E-08 5.3E-13 83.3 6.7 42 98-140 20-68 (243)
133 2o8b_B DNA mismatch repair pro 98.7 6E-09 2.1E-13 103.2 4.6 52 75-127 749-813 (1022)
134 3a00_A Guanylate kinase, GMP k 98.7 8.5E-09 2.9E-13 82.4 4.6 26 102-127 1-26 (186)
135 1ixz_A ATP-dependent metallopr 98.7 2.6E-09 8.8E-14 89.3 1.5 61 77-142 26-86 (254)
136 1iy2_A ATP-dependent metallopr 98.7 3E-09 1E-13 90.3 1.7 61 77-142 50-110 (278)
137 2kjq_A DNAA-related protein; s 98.7 1.6E-08 5.5E-13 78.4 5.7 40 101-142 35-76 (149)
138 3szr_A Interferon-induced GTP- 98.7 1.1E-09 3.8E-14 103.1 -1.2 62 76-141 10-84 (608)
139 2i3b_A HCR-ntpase, human cance 98.7 3.2E-09 1.1E-13 85.7 1.0 37 102-141 1-37 (189)
140 1in4_A RUVB, holliday junction 98.7 5E-10 1.7E-14 97.8 -4.1 65 76-141 18-93 (334)
141 1vma_A Cell division protein F 98.7 7.8E-08 2.7E-12 83.2 9.7 48 94-142 96-143 (306)
142 2cvh_A DNA repair and recombin 98.7 2.8E-08 9.6E-13 80.5 6.5 49 89-140 6-55 (220)
143 3vaa_A Shikimate kinase, SK; s 98.7 1E-08 3.5E-13 82.7 3.6 40 88-127 11-50 (199)
144 2j41_A Guanylate kinase; GMP, 98.7 1.3E-08 4.4E-13 81.9 4.0 35 97-132 1-35 (207)
145 2yv5_A YJEQ protein; hydrolase 98.6 9.2E-09 3.2E-13 88.8 2.8 44 97-142 160-206 (302)
146 2f1r_A Molybdopterin-guanine d 98.6 5.8E-09 2E-13 82.9 1.2 39 103-142 3-44 (171)
147 1t9h_A YLOQ, probable GTPase E 98.6 3.5E-09 1.2E-13 91.7 -0.3 45 97-142 168-215 (307)
148 3tqc_A Pantothenate kinase; bi 98.6 2.8E-09 9.5E-14 92.9 -1.2 57 80-136 64-127 (321)
149 3asz_A Uridine kinase; cytidin 98.6 2E-08 6.9E-13 81.3 3.9 29 99-127 3-31 (211)
150 4e22_A Cytidylate kinase; P-lo 98.6 4.9E-09 1.7E-13 88.1 0.1 42 100-142 25-77 (252)
151 2p5t_B PEZT; postsegregational 98.6 3.6E-07 1.2E-11 76.4 11.5 119 98-220 28-157 (253)
152 1ls1_A Signal recognition part 98.6 1.1E-08 3.8E-13 88.0 2.2 61 77-142 77-137 (295)
153 1rz3_A Hypothetical protein rb 98.6 2.6E-08 8.9E-13 80.5 3.4 44 98-142 18-61 (201)
154 3t61_A Gluconokinase; PSI-biol 98.5 3.3E-07 1.1E-11 73.7 9.3 107 102-218 18-129 (202)
155 1kgd_A CASK, peripheral plasma 98.5 3.5E-08 1.2E-12 78.4 3.2 36 100-135 3-38 (180)
156 3lda_A DNA repair protein RAD5 98.5 1.2E-07 4E-12 85.0 6.9 42 98-140 174-222 (400)
157 1qhx_A CPT, protein (chloramph 98.5 6.9E-07 2.4E-11 70.0 10.5 114 102-218 3-131 (178)
158 1wb9_A DNA mismatch repair pro 98.5 5.7E-08 2E-12 94.0 4.4 40 87-127 593-632 (800)
159 1zu4_A FTSY; GTPase, signal re 98.5 5.9E-08 2E-12 84.5 4.0 49 93-142 96-144 (320)
160 2bbw_A Adenylate kinase 4, AK4 98.5 9.2E-09 3.1E-13 85.7 -1.4 39 101-140 26-67 (246)
161 2vp4_A Deoxynucleoside kinase; 98.5 4.7E-08 1.6E-12 80.7 2.7 43 95-142 13-55 (230)
162 1nij_A Hypothetical protein YJ 98.5 4E-08 1.4E-12 85.3 2.2 41 102-143 4-52 (318)
163 3ec2_A DNA replication protein 98.5 3.9E-08 1.3E-12 77.8 1.9 36 96-132 32-67 (180)
164 2p67_A LAO/AO transport system 98.5 1.5E-08 5.2E-13 88.8 -0.8 67 74-141 28-94 (341)
165 2o5v_A DNA replication and rep 98.4 2.3E-07 7.8E-12 82.0 6.5 35 89-124 14-48 (359)
166 1nlf_A Regulatory protein REPA 98.4 8.8E-07 3E-11 75.0 9.9 30 98-127 26-55 (279)
167 3ney_A 55 kDa erythrocyte memb 98.4 2E-07 6.7E-12 75.7 5.4 32 96-127 13-44 (197)
168 1w1w_A Structural maintenance 98.4 1.7E-07 5.9E-12 84.4 5.1 49 76-131 6-54 (430)
169 2rcn_A Probable GTPase ENGC; Y 98.4 1.1E-07 3.9E-12 83.8 3.7 49 91-140 205-254 (358)
170 1svm_A Large T antigen; AAA+ f 98.4 1E-07 3.5E-12 84.8 2.7 44 89-136 156-199 (377)
171 3tau_A Guanylate kinase, GMP k 98.4 2.3E-07 7.9E-12 75.4 3.9 28 100-127 6-33 (208)
172 2dr3_A UPF0273 protein PH0284; 98.3 1.1E-06 3.8E-11 72.1 6.8 50 90-139 10-60 (247)
173 3qf7_A RAD50; ABC-ATPase, ATPa 98.3 3.9E-07 1.3E-11 80.5 4.0 36 90-126 12-47 (365)
174 3k1j_A LON protease, ATP-depen 98.3 1.5E-07 5.1E-12 88.5 1.3 62 80-142 38-100 (604)
175 1oix_A RAS-related protein RAB 98.3 5.3E-07 1.8E-11 71.8 4.4 38 103-141 30-78 (191)
176 1udx_A The GTP-binding protein 98.3 2E-07 6.7E-12 83.9 1.8 47 92-138 147-203 (416)
177 3m6a_A ATP-dependent protease 98.2 9.7E-08 3.3E-12 88.7 -0.7 59 79-139 86-144 (543)
178 1kag_A SKI, shikimate kinase I 98.2 4.4E-07 1.5E-11 70.8 3.2 36 101-141 3-38 (173)
179 1sxj_E Activator 1 40 kDa subu 98.2 6.6E-07 2.3E-11 77.8 3.8 38 104-142 38-76 (354)
180 2ffh_A Protein (FFH); SRP54, s 98.2 6.2E-07 2.1E-11 80.9 3.5 58 80-142 80-137 (425)
181 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1E-06 3.4E-11 78.7 4.8 41 98-139 16-68 (392)
182 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 1.6E-05 5.6E-10 66.6 11.5 113 100-218 2-118 (260)
183 2dhr_A FTSH; AAA+ protein, hex 98.2 5.9E-07 2E-11 82.6 2.3 61 77-142 41-101 (499)
184 4eaq_A DTMP kinase, thymidylat 98.1 1.8E-06 6.1E-11 71.4 5.0 44 92-137 13-59 (229)
185 2qt1_A Nicotinamide riboside k 98.1 1.3E-06 4.3E-11 70.5 3.8 33 94-126 13-45 (207)
186 1gvn_B Zeta; postsegregational 98.1 2.4E-05 8.3E-10 66.7 12.0 42 98-142 29-70 (287)
187 1ly1_A Polynucleotide kinase; 98.1 1.1E-05 3.8E-10 62.8 9.1 36 103-142 3-38 (181)
188 1j8m_F SRP54, signal recogniti 98.1 6.5E-07 2.2E-11 77.1 1.8 59 80-142 78-137 (297)
189 1cke_A CK, MSSA, protein (cyti 98.1 6E-07 2.1E-11 73.1 1.4 35 102-136 5-41 (227)
190 2f9l_A RAB11B, member RAS onco 98.1 1.9E-06 6.4E-11 68.8 4.0 38 104-141 7-54 (199)
191 2px0_A Flagellar biosynthesis 98.1 1.3E-06 4.4E-11 75.1 3.1 41 100-141 103-144 (296)
192 4ad8_A DNA repair protein RECN 98.1 1.3E-06 4.6E-11 80.5 3.2 36 89-125 48-83 (517)
193 3ice_A Transcription terminati 98.1 2E-06 6.8E-11 76.5 3.6 52 76-127 133-199 (422)
194 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 4.4E-06 1.5E-10 64.5 5.0 32 94-126 16-47 (149)
195 3zvl_A Bifunctional polynucleo 98.0 2.5E-05 8.7E-10 70.0 10.2 104 96-220 252-357 (416)
196 2rhm_A Putative kinase; P-loop 98.0 1.2E-05 4.2E-10 63.4 7.2 38 100-142 3-40 (193)
197 1y63_A LMAJ004144AAA protein; 98.0 3.5E-06 1.2E-10 66.8 3.7 32 94-125 2-33 (184)
198 2www_A Methylmalonic aciduria 98.0 3.5E-06 1.2E-10 74.0 3.7 41 100-141 72-112 (349)
199 2qor_A Guanylate kinase; phosp 97.9 4.1E-06 1.4E-10 67.5 3.2 30 98-127 8-37 (204)
200 1sxj_C Activator 1 40 kDa subu 97.9 1.4E-06 4.8E-11 75.8 0.2 47 81-127 23-71 (340)
201 1odf_A YGR205W, hypothetical 3 97.9 6.9E-06 2.4E-10 70.3 3.9 29 99-127 28-56 (290)
202 2vli_A Antibiotic resistance p 97.9 3.9E-05 1.3E-09 60.0 8.0 28 100-127 3-30 (183)
203 3t34_A Dynamin-related protein 97.9 4.7E-06 1.6E-10 73.1 2.3 42 89-134 24-67 (360)
204 1jjv_A Dephospho-COA kinase; P 97.8 8.8E-06 3E-10 65.3 3.4 32 104-141 4-35 (206)
205 1ltq_A Polynucleotide kinase; 97.8 7.5E-05 2.6E-09 63.4 9.4 36 103-142 3-38 (301)
206 1f6b_A SAR1; gtpases, N-termin 97.8 5.2E-06 1.8E-10 66.3 1.8 57 83-140 6-70 (198)
207 2ga8_A Hypothetical 39.9 kDa p 97.8 4.8E-06 1.6E-10 73.2 0.9 38 90-127 10-49 (359)
208 2if2_A Dephospho-COA kinase; a 97.8 1.3E-05 4.4E-10 64.2 3.3 21 104-124 3-23 (204)
209 3cm0_A Adenylate kinase; ATP-b 97.8 1.5E-05 5.2E-10 62.7 3.6 27 100-126 2-28 (186)
210 3qks_A DNA double-strand break 97.7 2.5E-05 8.6E-10 63.2 4.9 33 94-127 16-48 (203)
211 2r6a_A DNAB helicase, replicat 97.7 8.4E-05 2.9E-09 67.3 8.0 39 89-127 190-228 (454)
212 3hr8_A Protein RECA; alpha and 97.7 3E-05 1E-09 68.3 4.8 42 98-140 57-99 (356)
213 1m2o_B GTP-binding protein SAR 97.7 3.1E-05 1.1E-09 61.3 4.5 49 90-139 12-67 (190)
214 1lv7_A FTSH; alpha/beta domain 97.7 3.7E-05 1.3E-09 63.8 5.0 46 92-142 37-82 (257)
215 3kb2_A SPBC2 prophage-derived 97.7 2.3E-05 7.9E-10 60.5 3.5 24 104-127 3-26 (173)
216 3qkt_A DNA double-strand break 97.7 2.6E-05 8.9E-10 68.0 3.9 36 190-227 264-299 (339)
217 1np6_A Molybdopterin-guanine d 97.7 3.5E-05 1.2E-09 61.1 4.2 38 103-140 7-46 (174)
218 2qag_A Septin-2, protein NEDD5 97.6 6.4E-06 2.2E-10 72.6 -0.2 45 76-126 17-61 (361)
219 2vf7_A UVRA2, excinuclease ABC 97.6 3E-05 1E-09 75.3 3.6 28 92-119 26-53 (842)
220 1q3t_A Cytidylate kinase; nucl 97.6 3.9E-05 1.3E-09 63.1 3.7 28 99-126 13-40 (236)
221 1ypw_A Transitional endoplasmi 97.5 8.8E-05 3E-09 71.9 6.2 44 96-142 232-275 (806)
222 1kht_A Adenylate kinase; phosp 97.5 4.4E-05 1.5E-09 59.9 3.5 26 102-127 3-28 (192)
223 2gj8_A MNME, tRNA modification 97.5 4.9E-05 1.7E-09 59.2 3.5 27 100-126 2-28 (172)
224 2ze6_A Isopentenyl transferase 97.5 4.9E-05 1.7E-09 63.5 3.8 25 103-127 2-26 (253)
225 3iij_A Coilin-interacting nucl 97.5 3.7E-05 1.3E-09 60.3 2.8 28 99-126 8-35 (180)
226 2dy1_A Elongation factor G; tr 97.5 4.7E-05 1.6E-09 72.3 3.9 39 96-134 3-42 (665)
227 3trf_A Shikimate kinase, SK; a 97.5 5.3E-05 1.8E-09 59.5 3.5 27 101-127 4-30 (185)
228 1via_A Shikimate kinase; struc 97.5 4.6E-05 1.6E-09 59.5 2.9 33 104-141 6-38 (175)
229 3lw7_A Adenylate kinase relate 97.5 5.3E-05 1.8E-09 58.2 3.2 19 104-122 3-21 (179)
230 1vht_A Dephospho-COA kinase; s 97.5 7.4E-05 2.5E-09 60.4 4.0 24 101-124 3-26 (218)
231 2ygr_A Uvrabc system protein A 97.5 4.8E-05 1.6E-09 74.8 3.4 29 91-119 35-63 (993)
232 1ega_A Protein (GTP-binding pr 97.5 5.1E-05 1.7E-09 65.1 3.2 28 99-126 5-32 (301)
233 2r6f_A Excinuclease ABC subuni 97.5 5E-05 1.7E-09 74.5 3.3 29 91-119 33-61 (972)
234 3r20_A Cytidylate kinase; stru 97.5 6.3E-05 2.2E-09 62.4 3.5 26 101-126 8-33 (233)
235 2plr_A DTMP kinase, probable t 97.5 7.9E-05 2.7E-09 59.4 4.0 27 101-127 3-29 (213)
236 1mky_A Probable GTP-binding pr 97.5 8.8E-05 3E-09 66.8 4.7 39 103-141 181-230 (439)
237 2v54_A DTMP kinase, thymidylat 97.5 7.7E-05 2.6E-09 59.3 3.8 26 101-126 3-28 (204)
238 1v5w_A DMC1, meiotic recombina 97.4 0.00043 1.5E-08 60.4 8.8 43 98-140 118-166 (343)
239 3pih_A Uvrabc system protein A 97.4 4.5E-05 1.5E-09 74.7 2.7 29 91-119 13-41 (916)
240 2jaq_A Deoxyguanosine kinase; 97.4 7.3E-05 2.5E-09 59.3 3.5 24 104-127 2-25 (205)
241 1uf9_A TT1252 protein; P-loop, 97.4 9.1E-05 3.1E-09 58.8 3.9 35 101-141 7-41 (203)
242 1gtv_A TMK, thymidylate kinase 97.4 3.4E-05 1.2E-09 61.9 1.4 24 104-127 2-25 (214)
243 2wwf_A Thymidilate kinase, put 97.4 8E-05 2.7E-09 59.6 3.6 29 99-127 7-35 (212)
244 2c95_A Adenylate kinase 1; tra 97.4 8E-05 2.7E-09 58.8 3.5 29 99-127 6-34 (196)
245 2zr9_A Protein RECA, recombina 97.4 0.0001 3.4E-09 64.7 4.4 42 98-139 57-98 (349)
246 1nn5_A Similar to deoxythymidy 97.4 8.3E-05 2.8E-09 59.6 3.5 29 99-127 6-34 (215)
247 1tev_A UMP-CMP kinase; ploop, 97.4 9.7E-05 3.3E-09 58.0 3.8 26 101-126 2-27 (196)
248 2ohf_A Protein OLA1, GTP-bindi 97.4 8.1E-05 2.8E-09 66.4 3.6 41 98-139 18-69 (396)
249 4fcw_A Chaperone protein CLPB; 97.4 3.3E-05 1.1E-09 65.6 1.1 36 103-139 48-84 (311)
250 2bwj_A Adenylate kinase 5; pho 97.4 4.1E-05 1.4E-09 60.6 1.5 30 98-127 8-37 (199)
251 2wjg_A FEOB, ferrous iron tran 97.4 0.0001 3.5E-09 57.5 3.8 23 103-125 8-30 (188)
252 2qtf_A Protein HFLX, GTP-bindi 97.4 0.00012 4E-09 64.6 4.4 40 102-141 178-228 (364)
253 1ex7_A Guanylate kinase; subst 97.3 0.00011 3.7E-09 58.9 3.4 23 104-126 3-25 (186)
254 2wji_A Ferrous iron transport 97.3 0.00011 3.7E-09 56.6 3.2 24 103-126 4-27 (165)
255 1nks_A Adenylate kinase; therm 97.3 0.00011 3.9E-09 57.5 3.3 24 104-127 3-26 (194)
256 3kl4_A SRP54, signal recogniti 97.3 9.9E-05 3.4E-09 66.6 3.3 40 101-141 96-135 (433)
257 3ake_A Cytidylate kinase; CMP 97.3 0.00012 4.3E-09 58.2 3.5 24 104-127 4-27 (208)
258 2ce7_A Cell division protein F 97.3 3.4E-05 1.2E-09 70.5 -0.1 51 86-141 35-85 (476)
259 1uj2_A Uridine-cytidine kinase 97.3 0.00025 8.7E-09 58.8 5.0 43 100-142 20-67 (252)
260 3auy_A DNA double-strand break 97.3 0.00014 5E-09 64.0 3.6 31 93-124 17-47 (371)
261 1zuh_A Shikimate kinase; alpha 97.3 0.00017 5.9E-09 55.7 3.6 26 102-127 7-32 (168)
262 1aky_A Adenylate kinase; ATP:A 97.3 0.00016 5.5E-09 58.6 3.6 27 101-127 3-29 (220)
263 1qf9_A UMP/CMP kinase, protein 97.3 0.00019 6.6E-09 56.2 3.9 26 101-126 5-30 (194)
264 3cf0_A Transitional endoplasmi 97.2 0.00014 4.6E-09 62.2 3.1 42 97-141 44-85 (301)
265 2ius_A DNA translocase FTSK; n 97.2 0.00014 4.9E-09 66.8 3.5 47 94-140 159-206 (512)
266 2cdn_A Adenylate kinase; phosp 97.2 0.00019 6.4E-09 57.3 3.7 29 99-127 17-45 (201)
267 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00022 7.7E-09 63.0 4.5 35 101-136 34-68 (392)
268 2z0h_A DTMP kinase, thymidylat 97.2 0.00018 6.2E-09 56.7 3.5 24 104-127 2-25 (197)
269 2axn_A 6-phosphofructo-2-kinas 97.2 0.00066 2.3E-08 62.6 7.7 42 100-141 33-74 (520)
270 2iyv_A Shikimate kinase, SK; t 97.2 0.00014 4.6E-09 57.1 2.7 34 103-141 3-36 (184)
271 1ukz_A Uridylate kinase; trans 97.2 0.00022 7.4E-09 56.8 3.9 27 100-126 13-39 (203)
272 1xjc_A MOBB protein homolog; s 97.2 0.00019 6.5E-09 56.6 3.3 25 103-127 5-29 (169)
273 1e6c_A Shikimate kinase; phosp 97.2 0.00017 5.7E-09 55.8 2.9 24 104-127 4-27 (173)
274 1zd8_A GTP:AMP phosphotransfer 97.2 0.00019 6.6E-09 58.4 3.4 27 100-126 5-31 (227)
275 1g8f_A Sulfate adenylyltransfe 97.2 0.00028 9.6E-09 64.9 4.7 42 99-140 392-435 (511)
276 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.2E-09 57.5 3.5 24 104-127 2-25 (216)
277 1zak_A Adenylate kinase; ATP:A 97.2 0.00018 6.1E-09 58.4 3.0 27 101-127 4-30 (222)
278 2pbr_A DTMP kinase, thymidylat 97.2 0.00023 7.7E-09 55.9 3.5 24 104-127 2-25 (195)
279 2z43_A DNA repair and recombin 97.2 0.00034 1.2E-08 60.4 4.9 43 98-140 103-151 (324)
280 2pt5_A Shikimate kinase, SK; a 97.2 0.00025 8.6E-09 54.6 3.5 24 104-127 2-25 (168)
281 3dl0_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 57.0 3.6 24 104-127 2-25 (216)
282 2zej_A Dardarin, leucine-rich 97.1 0.00018 6.1E-09 56.4 2.4 22 104-125 4-25 (184)
283 3tlx_A Adenylate kinase 2; str 97.1 0.0003 1E-08 58.2 3.9 27 100-126 27-53 (243)
284 1bif_A 6-phosphofructo-2-kinas 97.1 0.0015 5.2E-08 59.2 8.5 38 100-137 37-74 (469)
285 3umf_A Adenylate kinase; rossm 97.1 0.00037 1.3E-08 57.1 3.9 32 96-127 23-54 (217)
286 3bos_A Putative DNA replicatio 97.1 0.00051 1.7E-08 55.4 4.6 27 101-127 51-77 (242)
287 2grj_A Dephospho-COA kinase; T 97.0 0.00035 1.2E-08 56.1 3.4 25 102-126 12-36 (192)
288 1ko7_A HPR kinase/phosphatase; 97.0 0.00046 1.6E-08 59.6 4.3 37 87-124 130-166 (314)
289 1a7j_A Phosphoribulokinase; tr 97.0 0.00017 5.9E-09 61.5 1.6 42 101-142 4-45 (290)
290 3be4_A Adenylate kinase; malar 97.0 0.0004 1.4E-08 56.2 3.3 27 101-127 4-30 (217)
291 2qmh_A HPR kinase/phosphorylas 97.0 0.00064 2.2E-08 55.0 4.4 36 89-125 22-57 (205)
292 2w58_A DNAI, primosome compone 97.0 0.00059 2E-08 54.2 4.2 25 103-127 55-79 (202)
293 2f6r_A COA synthase, bifunctio 97.0 0.00046 1.6E-08 58.5 3.7 25 100-124 73-97 (281)
294 1fnn_A CDC6P, cell division co 97.0 0.00072 2.5E-08 58.7 5.0 39 100-139 40-82 (389)
295 3lxx_A GTPase IMAP family memb 96.9 0.00054 1.8E-08 56.1 3.7 24 104-127 31-54 (239)
296 2qby_A CDC6 homolog 1, cell di 96.9 0.00043 1.5E-08 59.9 3.2 39 100-138 43-84 (386)
297 2xb4_A Adenylate kinase; ATP-b 96.9 0.00051 1.8E-08 55.9 3.5 23 104-126 2-24 (223)
298 4a1f_A DNAB helicase, replicat 96.9 0.0031 1.1E-07 55.0 8.5 38 90-127 34-71 (338)
299 3ihw_A Centg3; RAS, centaurin, 96.9 0.0011 3.6E-08 52.0 4.8 38 104-141 22-67 (184)
300 1ak2_A Adenylate kinase isoenz 96.9 0.00063 2.2E-08 55.6 3.7 28 100-127 14-41 (233)
301 1e4v_A Adenylate kinase; trans 96.9 0.00058 2E-08 55.0 3.3 23 104-126 2-24 (214)
302 3a8t_A Adenylate isopentenyltr 96.8 0.00077 2.6E-08 58.8 4.0 28 100-127 38-65 (339)
303 3d3q_A TRNA delta(2)-isopenten 96.8 0.00068 2.3E-08 59.2 3.7 25 103-127 8-32 (340)
304 3b9p_A CG5977-PA, isoform A; A 96.8 0.00069 2.4E-08 57.1 3.6 27 101-127 53-79 (297)
305 2h92_A Cytidylate kinase; ross 96.8 0.00058 2E-08 55.0 3.0 25 102-126 3-27 (219)
306 1jbk_A CLPB protein; beta barr 96.8 0.0008 2.7E-08 51.9 3.7 28 100-127 41-68 (195)
307 4edh_A DTMP kinase, thymidylat 96.8 0.00088 3E-08 54.5 4.0 28 100-127 4-31 (213)
308 1njg_A DNA polymerase III subu 96.8 0.00026 8.8E-09 56.7 0.7 24 104-127 47-70 (250)
309 3k53_A Ferrous iron transport 96.8 0.00063 2.2E-08 57.0 3.1 23 104-126 5-27 (271)
310 1jal_A YCHF protein; nucleotid 96.8 0.001 3.5E-08 58.6 4.6 37 102-138 2-48 (363)
311 3bh0_A DNAB-like replicative h 96.8 0.0072 2.4E-07 51.9 9.8 49 89-137 55-103 (315)
312 2ged_A SR-beta, signal recogni 96.8 0.00084 2.9E-08 52.5 3.5 24 103-126 49-72 (193)
313 3v9p_A DTMP kinase, thymidylat 96.7 0.00069 2.4E-08 55.8 2.8 29 99-127 22-50 (227)
314 1z2a_A RAS-related protein RAB 96.7 0.00089 3E-08 50.7 3.3 23 104-126 7-29 (168)
315 3crm_A TRNA delta(2)-isopenten 96.7 0.00099 3.4E-08 57.8 3.9 25 103-127 6-30 (323)
316 3ld9_A DTMP kinase, thymidylat 96.7 0.0011 3.9E-08 54.4 4.0 30 98-127 17-46 (223)
317 3lv8_A DTMP kinase, thymidylat 96.7 0.00089 3.1E-08 55.5 3.4 28 100-127 25-52 (236)
318 2ocp_A DGK, deoxyguanosine kin 96.7 0.001 3.6E-08 54.5 3.8 27 101-127 1-27 (241)
319 1sxj_D Activator 1 41 kDa subu 96.7 0.00048 1.6E-08 59.2 1.8 40 88-127 42-83 (353)
320 3h4m_A Proteasome-activating n 96.7 0.00081 2.8E-08 56.3 3.1 29 99-127 48-76 (285)
321 2ce2_X GTPase HRAS; signaling 96.7 0.00092 3.2E-08 50.2 3.1 23 104-126 5-27 (166)
322 3llm_A ATP-dependent RNA helic 96.7 0.00064 2.2E-08 55.7 2.4 27 98-124 72-98 (235)
323 2dyk_A GTP-binding protein; GT 96.7 0.001 3.5E-08 50.1 3.3 23 104-126 3-25 (161)
324 3exa_A TRNA delta(2)-isopenten 96.7 0.0012 4.2E-08 57.0 4.1 25 102-126 3-27 (322)
325 1kao_A RAP2A; GTP-binding prot 96.7 0.001 3.5E-08 50.1 3.3 23 104-126 5-27 (167)
326 1u8z_A RAS-related protein RAL 96.7 0.0011 3.6E-08 50.1 3.3 22 104-125 6-27 (168)
327 3sr0_A Adenylate kinase; phosp 96.7 0.0011 3.7E-08 53.7 3.5 24 104-127 2-25 (206)
328 1ek0_A Protein (GTP-binding pr 96.6 0.0011 3.9E-08 50.1 3.3 23 104-126 5-27 (170)
329 2erx_A GTP-binding protein DI- 96.6 0.0011 3.7E-08 50.3 3.1 22 104-125 5-26 (172)
330 1z0j_A RAB-22, RAS-related pro 96.6 0.0012 4E-08 50.1 3.3 23 104-126 8-30 (170)
331 2nzj_A GTP-binding protein REM 96.6 0.001 3.5E-08 50.8 2.9 23 104-126 6-28 (175)
332 1u94_A RECA protein, recombina 96.6 0.0016 5.4E-08 57.2 4.5 41 99-139 60-100 (356)
333 2lkc_A Translation initiation 96.6 0.0013 4.4E-08 50.4 3.6 25 101-125 7-31 (178)
334 1ky3_A GTP-binding protein YPT 96.6 0.0012 4E-08 50.7 3.3 23 104-126 10-32 (182)
335 1z08_A RAS-related protein RAB 96.6 0.0012 4.1E-08 50.2 3.3 22 104-125 8-29 (170)
336 1g16_A RAS-related protein SEC 96.6 0.0011 3.9E-08 50.2 3.1 23 104-126 5-27 (170)
337 1c1y_A RAS-related protein RAP 96.6 0.0012 4.2E-08 49.8 3.3 22 104-125 5-26 (167)
338 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.0012 4.3E-08 50.5 3.3 23 104-126 9-31 (177)
339 4tmk_A Protein (thymidylate ki 96.6 0.0013 4.3E-08 53.7 3.4 27 101-127 2-28 (213)
340 2p65_A Hypothetical protein PF 96.6 0.001 3.6E-08 51.2 2.8 27 101-127 42-68 (187)
341 1l8q_A Chromosomal replication 96.6 0.0013 4.3E-08 56.4 3.6 27 101-127 36-62 (324)
342 3q85_A GTP-binding protein REM 96.6 0.0011 3.9E-08 50.3 3.0 22 104-125 4-25 (169)
343 2fn4_A P23, RAS-related protei 96.6 0.0013 4.3E-08 50.5 3.1 22 104-125 11-32 (181)
344 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0015 5.1E-08 53.7 3.7 28 100-127 37-64 (262)
345 1ypw_A Transitional endoplasmi 96.5 0.00054 1.8E-08 66.4 1.1 45 95-142 504-548 (806)
346 3tmk_A Thymidylate kinase; pho 96.5 0.0014 4.9E-08 53.5 3.5 28 100-127 3-30 (216)
347 3q72_A GTP-binding protein RAD 96.5 0.00085 2.9E-08 50.9 2.0 23 104-126 4-26 (166)
348 3foz_A TRNA delta(2)-isopenten 96.5 0.0018 6E-08 55.9 4.1 27 101-127 9-35 (316)
349 1p5z_B DCK, deoxycytidine kina 96.5 0.00086 3E-08 55.8 2.2 29 99-127 21-49 (263)
350 1svi_A GTP-binding protein YSX 96.5 0.0013 4.5E-08 51.3 3.1 23 103-125 24-46 (195)
351 1r2q_A RAS-related protein RAB 96.5 0.0015 5.1E-08 49.4 3.3 22 104-125 8-29 (170)
352 3pqc_A Probable GTP-binding pr 96.5 0.0014 4.6E-08 51.0 3.1 23 104-126 25-47 (195)
353 3clv_A RAB5 protein, putative; 96.5 0.0015 5E-08 50.9 3.3 23 103-125 8-30 (208)
354 3bc1_A RAS-related protein RAB 96.5 0.0015 5.3E-08 50.5 3.3 22 104-125 13-34 (195)
355 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0016 5.3E-08 50.4 3.3 23 104-126 6-28 (189)
356 2oil_A CATX-8, RAS-related pro 96.5 0.0016 5.3E-08 51.0 3.3 23 104-126 27-49 (193)
357 3b1v_A Ferrous iron uptake tra 96.5 0.0014 4.8E-08 55.3 3.2 24 103-126 4-27 (272)
358 2r62_A Cell division protease 96.5 0.00058 2E-08 56.7 0.7 32 94-127 38-69 (268)
359 1upt_A ARL1, ADP-ribosylation 96.5 0.0024 8E-08 48.5 4.1 24 102-125 7-30 (171)
360 1r8s_A ADP-ribosylation factor 96.5 0.0017 5.9E-08 49.0 3.3 22 104-125 2-23 (164)
361 3t1o_A Gliding protein MGLA; G 96.5 0.0017 5.7E-08 50.5 3.3 24 104-127 16-39 (198)
362 2cxx_A Probable GTP-binding pr 96.5 0.0014 4.6E-08 50.9 2.7 23 104-126 3-25 (190)
363 2hxs_A RAB-26, RAS-related pro 96.5 0.0017 5.8E-08 49.7 3.3 23 104-126 8-30 (178)
364 1fzq_A ADP-ribosylation factor 96.4 0.0012 3.9E-08 51.5 2.3 24 102-125 16-39 (181)
365 3tw8_B RAS-related protein RAB 96.4 0.0011 3.9E-08 50.7 2.2 22 104-125 11-32 (181)
366 2y8e_A RAB-protein 6, GH09086P 96.4 0.0017 5.6E-08 49.7 3.1 22 104-125 16-37 (179)
367 2a9k_A RAS-related protein RAL 96.4 0.0018 6.1E-08 49.9 3.3 22 104-125 20-41 (187)
368 3con_A GTPase NRAS; structural 96.4 0.0018 6.1E-08 50.4 3.3 23 104-126 23-45 (190)
369 3dm5_A SRP54, signal recogniti 96.4 0.0034 1.1E-07 56.7 5.5 27 101-127 99-125 (443)
370 1z0f_A RAB14, member RAS oncog 96.4 0.0018 6.3E-08 49.4 3.3 23 104-126 17-39 (179)
371 2g6b_A RAS-related protein RAB 96.4 0.0018 6.3E-08 49.6 3.3 23 104-126 12-34 (180)
372 3lxw_A GTPase IMAP family memb 96.4 0.0018 6E-08 53.6 3.4 24 103-126 22-45 (247)
373 2i1q_A DNA repair and recombin 96.4 0.002 6.8E-08 55.3 3.8 28 98-125 94-121 (322)
374 1nrj_B SR-beta, signal recogni 96.4 0.0021 7.1E-08 51.3 3.5 23 104-126 14-36 (218)
375 2efe_B Small GTP-binding prote 96.4 0.002 6.8E-08 49.5 3.3 22 104-125 14-35 (181)
376 2bme_A RAB4A, RAS-related prot 96.4 0.0019 6.4E-08 49.9 3.1 23 104-126 12-34 (186)
377 3tqf_A HPR(Ser) kinase; transf 96.4 0.0023 8E-08 50.6 3.6 32 92-124 7-38 (181)
378 2wsm_A Hydrogenase expression/ 96.4 0.002 7E-08 51.6 3.3 26 101-126 29-54 (221)
379 2bov_A RAla, RAS-related prote 96.4 0.0021 7.2E-08 50.5 3.3 23 104-126 16-38 (206)
380 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0021 7.1E-08 50.0 3.1 22 104-125 9-30 (184)
381 2gf9_A RAS-related protein RAB 96.3 0.0022 7.7E-08 49.9 3.3 23 104-126 24-46 (189)
382 3tkl_A RAS-related protein RAB 96.3 0.0023 7.9E-08 49.9 3.3 23 104-126 18-40 (196)
383 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0023 8E-08 49.2 3.3 22 104-125 7-28 (186)
384 1vg8_A RAS-related protein RAB 96.3 0.0023 7.8E-08 50.4 3.3 23 104-126 10-32 (207)
385 3kkq_A RAS-related protein M-R 96.3 0.0024 8.3E-08 49.2 3.3 22 104-125 20-41 (183)
386 2gf0_A GTP-binding protein DI- 96.3 0.0022 7.6E-08 50.1 3.1 23 103-125 9-31 (199)
387 2fg5_A RAB-22B, RAS-related pr 96.3 0.0023 7.8E-08 50.2 3.1 23 104-126 25-47 (192)
388 2fv8_A H6, RHO-related GTP-bin 96.3 0.0021 7.3E-08 51.0 3.0 33 93-125 16-48 (207)
389 3n70_A Transport activator; si 96.3 0.0023 7.9E-08 48.3 3.0 28 100-127 22-49 (145)
390 3bwd_D RAC-like GTP-binding pr 96.3 0.003 1E-07 48.5 3.6 23 103-125 9-31 (182)
391 2dby_A GTP-binding protein; GD 96.3 0.0022 7.6E-08 56.5 3.2 21 105-125 4-24 (368)
392 3t15_A Ribulose bisphosphate c 96.3 0.0025 8.4E-08 54.2 3.4 29 99-127 33-61 (293)
393 2zts_A Putative uncharacterize 96.2 0.0027 9.4E-08 51.5 3.6 25 99-123 27-51 (251)
394 1z06_A RAS-related protein RAB 96.2 0.0026 8.8E-08 49.6 3.3 22 104-125 22-43 (189)
395 1wf3_A GTP-binding protein; GT 96.2 0.0025 8.5E-08 54.5 3.4 22 104-125 9-30 (301)
396 2e87_A Hypothetical protein PH 96.2 0.0019 6.5E-08 56.4 2.7 26 101-126 166-191 (357)
397 3syl_A Protein CBBX; photosynt 96.2 0.0026 8.9E-08 53.7 3.5 28 100-127 65-92 (309)
398 2z4s_A Chromosomal replication 96.2 0.0022 7.7E-08 57.7 3.2 26 102-127 130-155 (440)
399 1moz_A ARL1, ADP-ribosylation 96.2 0.0015 5.3E-08 50.3 1.9 25 100-124 16-40 (183)
400 3iby_A Ferrous iron transport 96.2 0.0025 8.4E-08 53.2 3.2 23 104-126 3-25 (256)
401 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0026 8.8E-08 57.9 3.5 37 90-127 140-176 (473)
402 3oes_A GTPase rhebl1; small GT 96.2 0.0025 8.7E-08 50.3 3.1 26 101-126 23-48 (201)
403 2a5j_A RAS-related protein RAB 96.2 0.0028 9.5E-08 49.6 3.3 23 104-126 23-45 (191)
404 3t5g_A GTP-binding protein RHE 96.2 0.0026 9E-08 48.9 3.1 21 104-124 8-28 (181)
405 3dz8_A RAS-related protein RAB 96.2 0.0026 8.9E-08 49.7 3.1 23 104-126 25-47 (191)
406 1zbd_A Rabphilin-3A; G protein 96.2 0.0026 9E-08 50.0 3.1 23 104-126 10-32 (203)
407 3eph_A TRNA isopentenyltransfe 96.2 0.003 1E-07 56.4 3.7 25 103-127 3-27 (409)
408 3iev_A GTP-binding protein ERA 96.2 0.0027 9.3E-08 54.3 3.4 23 103-125 11-33 (308)
409 2ew1_A RAS-related protein RAB 96.2 0.0027 9.3E-08 50.6 3.1 23 104-126 28-50 (201)
410 2xtp_A GTPase IMAP family memb 96.2 0.0027 9.1E-08 52.5 3.2 24 103-126 23-46 (260)
411 1zd9_A ADP-ribosylation factor 96.2 0.003 1E-07 49.3 3.3 23 103-125 23-45 (188)
412 1x3s_A RAS-related protein RAB 96.2 0.003 1E-07 49.0 3.3 24 103-126 16-39 (195)
413 2atv_A RERG, RAS-like estrogen 96.2 0.003 1E-07 49.6 3.3 24 102-125 28-51 (196)
414 2orw_A Thymidine kinase; TMTK, 96.2 0.0039 1.3E-07 49.4 3.9 25 101-125 2-27 (184)
415 2bcg_Y Protein YP2, GTP-bindin 96.2 0.0028 9.7E-08 50.1 3.1 23 104-126 10-32 (206)
416 3cbq_A GTP-binding protein REM 96.1 0.0017 5.7E-08 51.4 1.7 22 104-125 25-46 (195)
417 2cjw_A GTP-binding protein GEM 96.1 0.0031 1.1E-07 49.7 3.3 22 104-125 8-29 (192)
418 3reg_A RHO-like small GTPase; 96.1 0.0031 1.1E-07 49.3 3.3 23 104-126 25-47 (194)
419 3cph_A RAS-related protein SEC 96.1 0.0032 1.1E-07 49.8 3.3 25 101-125 19-43 (213)
420 1zj6_A ADP-ribosylation factor 96.1 0.0029 9.8E-08 49.2 3.0 24 101-124 15-38 (187)
421 2p5s_A RAS and EF-hand domain 96.1 0.0041 1.4E-07 48.9 3.9 27 100-126 26-52 (199)
422 3t5d_A Septin-7; GTP-binding p 96.1 0.002 6.8E-08 54.0 2.1 22 104-125 10-31 (274)
423 2o52_A RAS-related protein RAB 96.1 0.0028 9.6E-08 50.1 2.8 22 104-125 27-48 (200)
424 3uk6_A RUVB-like 2; hexameric 96.1 0.0054 1.8E-07 53.1 4.8 40 100-140 68-107 (368)
425 1d2n_A N-ethylmaleimide-sensit 96.1 0.004 1.4E-07 51.8 3.8 28 100-127 62-89 (272)
426 2h17_A ADP-ribosylation factor 96.1 0.0027 9.2E-08 49.2 2.6 23 103-125 22-44 (181)
427 1gwn_A RHO-related GTP-binding 96.1 0.0033 1.1E-07 50.2 3.1 24 103-126 29-52 (205)
428 3c5c_A RAS-like protein 12; GD 96.1 0.0036 1.2E-07 48.9 3.3 22 104-125 23-44 (187)
429 3a1s_A Iron(II) transport prot 96.1 0.0035 1.2E-07 52.3 3.4 23 104-126 7-29 (258)
430 1ksh_A ARF-like protein 2; sma 96.1 0.0037 1.3E-07 48.4 3.3 26 100-125 16-41 (186)
431 2iwr_A Centaurin gamma 1; ANK 96.1 0.0032 1.1E-07 48.3 2.9 22 104-125 9-30 (178)
432 2chg_A Replication factor C sm 96.1 0.0036 1.2E-07 49.3 3.3 23 104-126 40-62 (226)
433 2hf9_A Probable hydrogenase ni 96.1 0.0037 1.3E-07 50.2 3.4 26 102-127 38-63 (226)
434 2fh5_B SR-beta, signal recogni 96.0 0.004 1.4E-07 49.4 3.5 23 104-126 9-31 (214)
435 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0039 1.3E-07 53.7 3.6 39 100-140 43-81 (322)
436 3pvs_A Replication-associated 96.0 0.0011 3.9E-08 59.9 0.2 33 95-127 41-75 (447)
437 2il1_A RAB12; G-protein, GDP, 96.0 0.0025 8.5E-08 50.0 2.2 22 104-125 28-49 (192)
438 2v3c_C SRP54, signal recogniti 96.0 0.0018 6.3E-08 58.3 1.6 27 101-127 98-124 (432)
439 4dhe_A Probable GTP-binding pr 96.0 0.0016 5.4E-08 52.2 0.9 24 103-126 30-53 (223)
440 4hlc_A DTMP kinase, thymidylat 96.0 0.0081 2.8E-07 48.4 5.2 26 102-127 2-27 (205)
441 3i8s_A Ferrous iron transport 96.0 0.0036 1.2E-07 52.6 3.2 23 104-126 5-27 (274)
442 2f7s_A C25KG, RAS-related prot 96.0 0.0035 1.2E-07 49.9 3.0 22 104-125 27-48 (217)
443 2qu8_A Putative nucleolar GTP- 96.0 0.0034 1.2E-07 50.8 2.9 24 102-125 29-52 (228)
444 2v1u_A Cell division control p 96.0 0.003 1E-07 54.6 2.7 28 100-127 42-69 (387)
445 3gmt_A Adenylate kinase; ssgci 96.0 0.0043 1.5E-07 51.2 3.5 25 103-127 9-33 (230)
446 4b4t_K 26S protease regulatory 96.0 0.016 5.4E-07 52.1 7.4 41 99-142 203-243 (428)
447 2q3h_A RAS homolog gene family 96.0 0.0037 1.3E-07 49.1 3.0 25 101-125 19-43 (201)
448 3hws_A ATP-dependent CLP prote 96.0 0.0036 1.2E-07 54.5 3.1 27 101-127 50-76 (363)
449 4b4t_M 26S protease regulatory 96.0 0.015 5E-07 52.4 7.1 41 99-142 212-252 (434)
450 2gco_A H9, RHO-related GTP-bin 96.0 0.004 1.4E-07 49.2 3.1 22 104-125 27-48 (201)
451 1ofh_A ATP-dependent HSL prote 96.0 0.0037 1.3E-07 52.5 3.1 27 101-127 49-75 (310)
452 4bas_A ADP-ribosylation factor 96.0 0.0031 1.1E-07 49.2 2.5 24 102-125 17-40 (199)
453 2h57_A ADP-ribosylation factor 96.0 0.0022 7.6E-08 50.0 1.5 24 103-126 22-45 (190)
454 1jwy_B Dynamin A GTPase domain 95.9 0.0038 1.3E-07 52.9 3.1 23 104-126 26-48 (315)
455 2atx_A Small GTP binding prote 95.9 0.0042 1.4E-07 48.5 3.1 22 104-125 20-41 (194)
456 3llu_A RAS-related GTP-binding 95.9 0.0038 1.3E-07 49.1 2.8 23 104-126 22-44 (196)
457 2j1l_A RHO-related GTP-binding 95.9 0.0037 1.3E-07 50.0 2.8 22 104-125 36-57 (214)
458 2fu5_C RAS-related protein RAB 95.9 0.0025 8.4E-08 49.2 1.6 22 104-125 10-31 (183)
459 4b4t_J 26S protease regulatory 95.9 0.016 5.4E-07 51.7 7.0 41 99-142 179-219 (405)
460 4b4t_L 26S protease subunit RP 95.9 0.015 5.1E-07 52.4 6.9 41 99-142 212-252 (437)
461 2bjv_A PSP operon transcriptio 95.9 0.0077 2.6E-07 49.8 4.7 37 101-137 28-64 (265)
462 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0056 1.9E-07 53.1 3.6 28 98-125 119-146 (331)
463 3eie_A Vacuolar protein sortin 95.8 0.0057 2E-07 52.4 3.7 27 101-127 50-76 (322)
464 1h65_A Chloroplast outer envel 95.8 0.005 1.7E-07 51.4 3.2 23 104-126 41-63 (270)
465 2r44_A Uncharacterized protein 95.8 0.0012 4.1E-08 56.7 -0.8 37 91-127 35-71 (331)
466 2hup_A RAS-related protein RAB 95.8 0.0052 1.8E-07 48.6 3.1 22 104-125 31-52 (201)
467 3def_A T7I23.11 protein; chlor 95.8 0.0051 1.8E-07 51.1 3.2 24 103-126 37-60 (262)
468 3p32_A Probable GTPase RV1496/ 95.8 0.0088 3E-07 52.1 4.8 28 100-127 77-104 (355)
469 2aka_B Dynamin-1; fusion prote 95.8 0.005 1.7E-07 51.7 3.1 23 104-126 28-50 (299)
470 3d8b_A Fidgetin-like protein 1 95.8 0.0059 2E-07 53.2 3.7 28 100-127 115-142 (357)
471 3cpj_B GTP-binding protein YPT 95.7 0.0059 2E-07 49.0 3.3 23 104-126 15-37 (223)
472 2qgz_A Helicase loader, putati 95.7 0.0064 2.2E-07 52.1 3.6 26 102-127 152-177 (308)
473 3fdi_A Uncharacterized protein 95.7 0.0063 2.2E-07 48.8 3.4 32 103-139 7-38 (201)
474 4gzl_A RAS-related C3 botulinu 95.7 0.0057 1.9E-07 48.5 3.1 25 101-125 29-53 (204)
475 1xp8_A RECA protein, recombina 95.7 0.0082 2.8E-07 52.8 4.3 42 98-139 70-111 (366)
476 3q3j_B RHO-related GTP-binding 95.7 0.0064 2.2E-07 48.7 3.3 23 103-125 28-50 (214)
477 1tue_A Replication protein E1; 95.7 0.0051 1.7E-07 50.0 2.7 29 99-127 55-83 (212)
478 1g41_A Heat shock protein HSLU 95.7 0.0065 2.2E-07 54.9 3.6 35 104-141 52-86 (444)
479 2b6h_A ADP-ribosylation factor 95.7 0.0056 1.9E-07 48.1 2.8 25 100-124 27-51 (192)
480 4b4t_I 26S protease regulatory 95.7 0.028 9.6E-07 50.5 7.6 41 99-142 213-253 (437)
481 2q6t_A DNAB replication FORK h 95.7 0.0065 2.2E-07 54.6 3.5 49 90-138 188-237 (444)
482 3cnl_A YLQF, putative uncharac 95.7 0.0065 2.2E-07 50.9 3.3 25 103-127 100-124 (262)
483 2qby_B CDC6 homolog 3, cell di 95.6 0.0066 2.3E-07 52.6 3.5 26 101-126 44-69 (384)
484 1um8_A ATP-dependent CLP prote 95.6 0.006 2.1E-07 53.3 3.2 26 102-127 72-97 (376)
485 2j0v_A RAC-like GTP-binding pr 95.6 0.0064 2.2E-07 48.2 3.1 23 103-125 10-32 (212)
486 3pfi_A Holliday junction ATP-d 95.6 0.0074 2.5E-07 51.7 3.7 25 103-127 56-80 (338)
487 3io5_A Recombination and repai 95.6 0.0082 2.8E-07 52.0 3.8 41 99-140 26-68 (333)
488 4b4t_H 26S protease regulatory 95.6 0.023 7.7E-07 51.5 6.9 40 99-141 240-279 (467)
489 2c9o_A RUVB-like 1; hexameric 95.6 0.011 3.9E-07 53.1 5.0 41 101-142 62-102 (456)
490 2yc2_C IFT27, small RAB-relate 95.6 0.0025 8.5E-08 50.1 0.5 23 103-125 21-43 (208)
491 2g3y_A GTP-binding protein GEM 95.6 0.0064 2.2E-07 49.1 2.9 22 104-125 39-60 (211)
492 2b8t_A Thymidine kinase; deoxy 95.6 0.0098 3.3E-07 48.7 4.0 27 100-126 10-36 (223)
493 3co5_A Putative two-component 95.6 0.0035 1.2E-07 47.2 1.2 25 101-125 26-50 (143)
494 1knx_A Probable HPR(Ser) kinas 95.5 0.0067 2.3E-07 52.3 3.0 39 85-124 131-169 (312)
495 2qp9_X Vacuolar protein sortin 95.5 0.0068 2.3E-07 52.9 3.1 27 101-127 83-109 (355)
496 1c9k_A COBU, adenosylcobinamid 95.5 0.0067 2.3E-07 48.1 2.6 20 105-124 2-21 (180)
497 4djt_A GTP-binding nuclear pro 95.5 0.0026 8.9E-08 50.8 0.2 22 104-125 13-34 (218)
498 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.0046 1.6E-07 56.7 1.7 41 87-127 26-66 (500)
499 4i1u_A Dephospho-COA kinase; s 95.4 0.0096 3.3E-07 48.4 3.3 21 104-124 11-31 (210)
500 1jr3_A DNA polymerase III subu 95.4 0.0029 1E-07 54.7 0.1 24 104-127 40-63 (373)
No 1
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=3.9e-24 Score=178.31 Aligned_cols=148 Identities=22% Similarity=0.193 Sum_probs=107.2
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------c-c
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------N-R 147 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~-~ 147 (234)
+++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.... . .
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-PTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-CSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHHHHhC
Confidence 6889999999998899999999999999999999999999999999999998 99999999998874310 0 0
Q ss_pred cCCCChh--------hHHHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCce
Q 026740 148 DLSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 148 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
.+++.++ ...+++.. ...+...+...++.. ...++.+.+++...+++++..+.+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l- 161 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL- 161 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE-
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE-
Confidence 1111111 11111111 011222333333321 123455667778899999999998
Q ss_pred EEEEeCChhhhhhcchhhHHHHHH
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|||+..|+....+.+++.++
T Consensus 162 -llLDEPt~~LD~~~~~~~~~~l~ 184 (224)
T 2pcj_A 162 -LFADEPTGNLDSANTKRVMDIFL 184 (224)
T ss_dssp -EEEESTTTTCCHHHHHHHHHHHH
T ss_pred -EEEeCCCCCCCHHHHHHHHHHHH
Confidence 89999999998888877777664
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.89 E-value=4.2e-24 Score=179.37 Aligned_cols=148 Identities=16% Similarity=0.137 Sum_probs=104.1
Q ss_pred cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----
Q 026740 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----- 146 (234)
Q Consensus 76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----- 146 (234)
+++++|+++.|++ ..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHH
Confidence 3678999999963 469999999999999999999999999999999999998 999999999988743110
Q ss_pred ---ccCCCChh--------hHHHHHHH---------------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHH
Q 026740 147 ---RDLSFKAE--------DRVENIRR---------------IGEVAKLFADAGVI------CIACLISPYRKDRDACRS 194 (234)
Q Consensus 147 ---~~~~~~~~--------~~~~~~~~---------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 194 (234)
..+++.++ ...+++.. ...+...+...++. ....++.+.+++...+++
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 00111110 01111110 01122222322321 112345566778889999
Q ss_pred hCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++..+.+ +++|||+..|+......+++.++
T Consensus 160 l~~~p~l--lllDEPts~LD~~~~~~i~~~l~ 189 (235)
T 3tif_A 160 LANNPPI--ILADQPTWALDSKTGEKIMQLLK 189 (235)
T ss_dssp HTTCCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 9999999 89999999998888877777664
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.89 E-value=4.1e-24 Score=189.53 Aligned_cols=150 Identities=16% Similarity=0.192 Sum_probs=106.4
Q ss_pred cccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----
Q 026740 74 STVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---- 145 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---- 145 (234)
.++++++|+++.|+. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECSSCCHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHH
Confidence 347999999999963 569999999999999999999999999999999999998 99999999999885311
Q ss_pred ---cccCCCChh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026740 146 ---NRDLSFKAE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 146 ---~~~~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~ 197 (234)
...+++..+ ...+++... ..+..++...++. ....++.+.+++..++++++.
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 011111111 011111110 0122222222221 112335566778889999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
.+.+ +++|||++.|+......+++.++
T Consensus 181 ~P~l--LLlDEPTs~LD~~~~~~i~~lL~ 207 (366)
T 3tui_C 181 NPKV--LLCDQATSALDPATTRSILELLK 207 (366)
T ss_dssp CCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred CCCE--EEEECCCccCCHHHHHHHHHHHH
Confidence 9999 89999999998888877777665
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.89 E-value=4e-24 Score=190.64 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=107.8
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~ 153 (234)
.++++|+++.|++..+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..... ..+++..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-CCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 4789999999999999999999999999999999999999999999999998 999999999998854221 1111111
Q ss_pred hh--------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 154 ED--------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 154 ~~--------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
++ ..+++.+. ..+..++...++. ....++.+.+++..++++++..+.+ +++||
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l--LLLDE 159 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDE 159 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE--EEEES
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence 11 11111110 0122223322321 1233456677888999999999999 89999
Q ss_pred ChhhhhhcchhhHHHHHH
Q 026740 209 PLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~ 226 (234)
|++.|+...+..+++.++
T Consensus 160 Pts~LD~~~~~~l~~~l~ 177 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEIS 177 (381)
T ss_dssp TTTTSCHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHH
Confidence 999998887777776654
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.89 E-value=5.9e-24 Score=181.61 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=106.6
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--------
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-------- 146 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-------- 146 (234)
++++++|+++.|++..+|+++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCCHHHHhheEE
Confidence 47899999999999999999999999999999999999999999999999998 999999999998753210
Q ss_pred ---cc----CCCChhhHHHHHHH----------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC------C
Q 026740 147 ---RD----LSFKAEDRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP------E 198 (234)
Q Consensus 147 ---~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~------~ 198 (234)
.. ..++..+ ++.. ...+...+...++. ....++.+.+++...+++++. .
T Consensus 89 ~v~q~~~~~~~~tv~e---~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSE---VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EECSCCCCCSCCBHHH---HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEecCCccCCCCCHHH---HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 00 0111111 1100 00122223322321 123345667778889999987 8
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+.+ +++|||++.|+......+++.++
T Consensus 166 p~l--LllDEPts~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 166 PRW--LFLDEPTSALDLYHQQHTLRLLR 191 (266)
T ss_dssp CEE--EEECCCCSSCCHHHHHHHHHHHH
T ss_pred CCE--EEEeCccccCCHHHHHHHHHHHH
Confidence 888 89999999998888777776654
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.88 E-value=7.4e-23 Score=181.26 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=106.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc----ccc--cccC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HGL--NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~----~~~--~~~~ 149 (234)
+++++|+++.|++..+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. ... ...+
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-PDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEECcccccccchhhCCE
Confidence 5889999999999999999999999999999999999999999999999998 99999999999872 110 0111
Q ss_pred CCChhh--------HHHHHHH------------HHHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 150 SFKAED--------RVENIRR------------IGEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
++..++ ..+++.+ ...+..++...++ .....++.+.+++...+++++..+.+ +
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l--L 160 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL--I 160 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--E
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence 111111 0111100 0012222222222 12233456677888999999999999 8
Q ss_pred EEeCChhhhhhcchhhHHHHH
Q 026740 205 FMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~ 225 (234)
++|||++.|+...+..+++.+
T Consensus 161 LLDEPts~LD~~~r~~l~~~l 181 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDM 181 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHH
Confidence 999999999888877776543
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.88 E-value=2.3e-23 Score=178.68 Aligned_cols=149 Identities=16% Similarity=0.177 Sum_probs=106.7
Q ss_pred ccceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------ccc
Q 026740 75 TVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNR 147 (234)
Q Consensus 75 ~~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~ 147 (234)
++++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++... ...
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-PSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCCSHHHHHHHHH
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeEEEECCEECCcccccHHHHhC
Confidence 47899999999975 459999999999999999999999999999999999998 9999999999987310 000
Q ss_pred cCCCChh---------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026740 148 DLSFKAE---------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 148 ~~~~~~~---------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
.+++.++ ...+++... ..+...+...++. ....++.+.+++...+++++..+.+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l 164 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 1111111 111111110 0122223333321 1233456677888999999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHH
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|||++.|+......+++.++
T Consensus 165 --LlLDEPts~LD~~~~~~i~~~l~ 187 (275)
T 3gfo_A 165 --LILDEPTAGLDPMGVSEIMKLLV 187 (275)
T ss_dssp --EEEECTTTTCCHHHHHHHHHHHH
T ss_pred --EEEECccccCCHHHHHHHHHHHH
Confidence 89999999998888777776664
No 8
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.87 E-value=4.9e-23 Score=183.42 Aligned_cols=148 Identities=18% Similarity=0.127 Sum_probs=108.2
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~ 153 (234)
+++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..... +.+++..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCCCChhhCcEEEEe
Confidence 5889999999998899999999999999999999999999999999999998 999999999998753211 1111111
Q ss_pred hhH--------HHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 154 EDR--------VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 154 ~~~--------~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
++. .+++.+ -..+..++...++. ....++.+.+++...+++++..+.+ +++||
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDE 167 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV--LLMDE 167 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE--EEEES
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 110 011100 00122233333321 1233466778888999999999999 89999
Q ss_pred ChhhhhhcchhhHHHHHH
Q 026740 209 PLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~ 226 (234)
|++.|+...+..+++.++
T Consensus 168 P~s~LD~~~r~~l~~~l~ 185 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIK 185 (372)
T ss_dssp TTTTSCHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHH
Confidence 999998888887776664
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.87 E-value=3.3e-23 Score=183.76 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=107.5
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~ 153 (234)
+++++|++++|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..... ..+++..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-PTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-CCccEEEECCEECCCCChhhCcEEEEe
Confidence 4788999999998899999999999999999999999999999999999998 999999999998753211 1111111
Q ss_pred h--------hHHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 154 E--------DRVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 154 ~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
+ ...+++.+ -..+..++...++. ....++.+.+++...+++++..+.+ +++||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l--LLLDE 159 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV--LLFDE 159 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEES
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence 1 01111110 00122233333321 1233456677888999999999999 89999
Q ss_pred ChhhhhhcchhhHHHHHH
Q 026740 209 PLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~ 226 (234)
|++.|+...+..+++.++
T Consensus 160 P~s~LD~~~r~~l~~~l~ 177 (359)
T 2yyz_A 160 PLSNLDANLRMIMRAEIK 177 (359)
T ss_dssp TTTTSCHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999998888877776654
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=4.2e-22 Score=167.61 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=106.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCCHHHHHhCCE
Confidence 46899999999998889999999999999999999999999999999999998 99999999998874210 0001
Q ss_pred CCChh--------hHHHHHHH-----------HHHHHHHHHhc------CceEEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 150 SFKAE--------DRVENIRR-----------IGEVAKLFADA------GVICIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 150 ~~~~~--------~~~~~~~~-----------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
++.++ ...+++.. ...+..++..+ .......++.+.+++...+++++..+.+ +
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--l 161 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL--L 161 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE--E
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence 11100 00111100 00111111111 1122234556677888899999999999 8
Q ss_pred EEeCChhhhhhcchhhHHHHHH
Q 026740 205 FMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++|||+..|+....+.+++.++
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~ 183 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHH
T ss_pred EEcCCcccCCHHHHHHHHHHHH
Confidence 9999999998888888777665
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.87 E-value=4.2e-23 Score=183.23 Aligned_cols=148 Identities=18% Similarity=0.127 Sum_probs=108.2
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~ 153 (234)
+++++|++++|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..... ..+++..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-PTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHhHCcEEEEe
Confidence 4788999999998889999999999999999999999999999999999998 999999999998753211 1111111
Q ss_pred h--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026740 154 E--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDV 208 (234)
Q Consensus 154 ~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~ 208 (234)
+ ...+++.+. ..+...+...++.. ...++.+.+++...+++++..+.+ +++||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDE 159 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV--LLLDE 159 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEES
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence 1 111211110 11222333333311 123456677888999999999999 89999
Q ss_pred ChhhhhhcchhhHHHHHH
Q 026740 209 PLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 209 P~~~l~~R~~~~l~~~~~ 226 (234)
|++.|+...+..+++.++
T Consensus 160 P~s~LD~~~r~~l~~~l~ 177 (362)
T 2it1_A 160 PLSNLDALLRLEVRAELK 177 (362)
T ss_dssp GGGGSCHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHH
Confidence 999998888887777664
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.87 E-value=4e-23 Score=182.89 Aligned_cols=149 Identities=14% Similarity=0.150 Sum_probs=108.9
Q ss_pred ccceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCC
Q 026740 75 TVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSF 151 (234)
Q Consensus 75 ~~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~ 151 (234)
.+++++|+++.| ++.++++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+++
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-PTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSSEEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECCcCChhhCcEEE
Confidence 368899999999 88889999999999999999999999999999999999998 99999999999875321 111222
Q ss_pred Chhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026740 152 KAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM 206 (234)
Q Consensus 152 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l 206 (234)
..++ ..+++.+. ..+..++...++.. ...++.+.+++...+++++..+.+ +++
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLL 169 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV--LLF 169 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 1111 11211110 11222333333311 123455667788999999999999 899
Q ss_pred eCChhhhhhcchhhHHHHHH
Q 026740 207 DVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 207 d~P~~~l~~R~~~~l~~~~~ 226 (234)
|||++.|+...+..+++.++
T Consensus 170 DEP~s~LD~~~r~~l~~~l~ 189 (355)
T 1z47_A 170 DEPFAAIDTQIRRELRTFVR 189 (355)
T ss_dssp ESTTCCSSHHHHHHHHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHH
Confidence 99999998888887777654
No 13
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.87 E-value=4.1e-22 Score=165.00 Aligned_cols=146 Identities=16% Similarity=0.204 Sum_probs=106.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh-
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE- 154 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~- 154 (234)
.++++|+++.|++ ++++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. .....+++.++
T Consensus 10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~-~~~~~i~~v~q~ 86 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPIT-KVKGKIFFLPEE 86 (214)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGG-GGGGGEEEECSS
T ss_pred eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEhh-hhcCcEEEEeCC
Confidence 6899999999988 99999999999999999999999999999999999998 99999999998763 11111111110
Q ss_pred -------hHHHHHHHH----------HHHHHHHHhcCceE----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026740 155 -------DRVENIRRI----------GEVAKLFADAGVIC----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (234)
Q Consensus 155 -------~~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l 213 (234)
...+++... ..+...+..+++.. ...++.+.+++...+++++..+.+ +++|||+..|
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~l--llLDEPts~L 164 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI--YVLDDPVVAI 164 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE--EEEESTTTTS
T ss_pred CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCcCC
Confidence 111222110 01222333333321 123455667778899999999999 8999999999
Q ss_pred hhcchhhHHHHHH
Q 026740 214 EARDPKGLYKLAR 226 (234)
Q Consensus 214 ~~R~~~~l~~~~~ 226 (234)
+......+++.++
T Consensus 165 D~~~~~~l~~~l~ 177 (214)
T 1sgw_A 165 DEDSKHKVLKSIL 177 (214)
T ss_dssp CTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9888888777665
No 14
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.87 E-value=7e-22 Score=168.48 Aligned_cols=148 Identities=17% Similarity=0.187 Sum_probs=107.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc--ccc----cccC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--HGL----NRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~--~~~----~~~~ 149 (234)
+++++|+++.|++..+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. ... ...+
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEECCEECCCccccHHHHhCcE
Confidence 6899999999998899999999999999999999999999999999999998 99999999998873 000 0001
Q ss_pred CCChh--------hHHHHHHH-------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026740 150 SFKAE--------DRVENIRR-------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 150 ~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
++.++ ...+++.. ...+...+...++.. ...++.+.+++...+++++..+.+
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l-- 180 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI-- 180 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE--
Confidence 11111 11111111 011222333333321 123455667778899999999998
Q ss_pred EEEeCChhhhhhcchhhHHHHHH
Q 026740 204 VFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|||+..|+......+++.++
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~ 203 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMK 203 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHH
Confidence 89999999998888877777664
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=1.2e-21 Score=166.37 Aligned_cols=150 Identities=13% Similarity=0.155 Sum_probs=108.4
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCC
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLS 150 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~ 150 (234)
.++++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...++
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCccHHHHhhcEE
Confidence 357899999999998899999999999999999999999999999999999998 99999999998864210 00111
Q ss_pred CChh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEE
Q 026740 151 FKAE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVF 205 (234)
Q Consensus 151 ~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ 205 (234)
+.++ ...+++... ..+...+...++. ....++.+.+++...+++++..+.+ ++
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l--ll 169 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL--AI 169 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EE
Confidence 1111 111111110 0122223333321 1223455677788899999999999 89
Q ss_pred EeCChhhhhhcchhhHHHHHH
Q 026740 206 MDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 206 ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+|||+..|+......+++.++
T Consensus 170 LDEPts~LD~~~~~~l~~~l~ 190 (256)
T 1vpl_A 170 LDEPTSGLDVLNAREVRKILK 190 (256)
T ss_dssp EESTTTTCCHHHHHHHHHHHH
T ss_pred EeCCccccCHHHHHHHHHHHH
Confidence 999999998888888777665
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.86 E-value=6.9e-22 Score=167.92 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=107.7
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL 149 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~ 149 (234)
++++++|+++.|++.++++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCE
Confidence 46899999999999899999999999999999999999999999999999998 99999999998874210 0011
Q ss_pred CCChhh--------HHHHHHH-------------------------HHHHHHHHHhcCce-----EEEecCcccHHHHHH
Q 026740 150 SFKAED--------RVENIRR-------------------------IGEVAKLFADAGVI-----CIACLISPYRKDRDA 191 (234)
Q Consensus 150 ~~~~~~--------~~~~~~~-------------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 191 (234)
++.+++ ..+++.. ...+...+...++. ....++.+.+++...
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i 164 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 164 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence 111110 0011100 00122223333321 122345566777889
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++++..+.+ +++|||++.|+......+++.+++
T Consensus 165 AraL~~~p~l--llLDEPts~LD~~~~~~l~~~l~~ 198 (257)
T 1g6h_A 165 GRALMTNPKM--IVMDEPIAGVAPGLAHDIFNHVLE 198 (257)
T ss_dssp HHHHHTCCSE--EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999998 899999999988888887776653
No 17
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.86 E-value=4e-22 Score=171.36 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=108.1
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc--ccc----cc
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--HGL----NR 147 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~--~~~----~~ 147 (234)
.++++++|+++.|++.++++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. ... ..
T Consensus 19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTBCCC---CCHHHHHT
T ss_pred CceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCeEEEECCEEcccccCCHHHHcC
Confidence 347899999999998899999999999999999999999999999999999998 99999999998774 110 01
Q ss_pred cCCCChhh----------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhC
Q 026740 148 DLSFKAED----------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSML 196 (234)
Q Consensus 148 ~~~~~~~~----------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll 196 (234)
.+++.+++ ..+++.. ...+...+...++. ....++.+.+++...+++++
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 11121111 0111100 01122223333321 12234556677788999999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
..+.+ +++|||+..|+....+.+++.++
T Consensus 178 ~~p~l--LlLDEPts~LD~~~~~~l~~~l~ 205 (279)
T 2ihy_A 178 GQPQV--LILDEPAAGLDFIARESLLSILD 205 (279)
T ss_dssp TCCSE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred CCCCE--EEEeCCccccCHHHHHHHHHHHH
Confidence 99999 89999999998888888777664
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.86 E-value=1e-21 Score=167.30 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=106.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc----------c-
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------G- 144 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~----------~- 144 (234)
+++++|+++.|++..+++|+||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEccccccccccccccC
Confidence 6899999999998899999999999999999999999999999999999998 999999999988741 0
Q ss_pred ------ccccCCCChh--------hHHHHHHH-------------HHHHHHHHHhcCceEE------EecCcccHHHHHH
Q 026740 145 ------LNRDLSFKAE--------DRVENIRR-------------IGEVAKLFADAGVICI------ACLISPYRKDRDA 191 (234)
Q Consensus 145 ------~~~~~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 191 (234)
....+++.++ ...+++.. ...+...+...++... ..++.+.+++...
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 0000111111 11111111 0112223333333211 2345566777889
Q ss_pred HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++++..+.+ +++|||+..|+......+++.++
T Consensus 165 AraL~~~p~l--llLDEPts~LD~~~~~~~~~~l~ 197 (262)
T 1b0u_A 165 ARALAMEPDV--LLFDEPTSALDPELVGEVLRIMQ 197 (262)
T ss_dssp HHHHHTCCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 9999999999 89999999998888877777664
No 19
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.86 E-value=1.8e-22 Score=170.63 Aligned_cols=149 Identities=21% Similarity=0.175 Sum_probs=103.8
Q ss_pred cceeeceeeec--CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 76 VAKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
-++++|+++.| ++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++..... ..+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhcE
Confidence 46789999999 46789999999999999999999999999999999999998 999999999988743100 001
Q ss_pred CCChh-------hHHHHHHHH------HHHHHHHHhcCce----------------EEEecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAE-------DRVENIRRI------GEVAKLFADAGVI----------------CIACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~-------~~~~~~~~~------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.++ ...+++... ..+...+...++. ....++.+.+++...+++++..+.
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 11000 011111000 0010111111110 012345667788889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||+..|+....+.+++.+++
T Consensus 166 l--llLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 166 I--LIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp E--EEECCCCSCCCHHHHHHHHHHHHH
T ss_pred E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 9 899999999988888888777654
No 20
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=1.1e-22 Score=176.98 Aligned_cols=149 Identities=13% Similarity=0.160 Sum_probs=104.8
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~ 150 (234)
.++++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|++. |++|+|.++|+++..... ..++
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD-ISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC-CSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCcEEEECCEEcccCCHHHHhcceE
Confidence 588999999995 5789999999999999999999999999999999999998 999999999998753210 0011
Q ss_pred CChh-------hHHHHHH------------HHHHH---HHHHHhc--CceEE-----EecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAE-------DRVENIR------------RIGEV---AKLFADA--GVICI-----ACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~-------~~~~~~~------------~~~~~---~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.++ ...+++. ..... ....... ++... ..++.+.+++..++++++..+.+
T Consensus 132 ~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 132 VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 1110 0111110 00000 1111111 11111 23456677888999999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||++.|+......+++.+++
T Consensus 212 --LlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 212 --ILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp --EEEECCSSCCCHHHHHHHHHHHHH
T ss_pred --EEEECCcccCCHHHHHHHHHHHHH
Confidence 899999999988887777776653
No 21
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.86 E-value=3.1e-22 Score=171.38 Aligned_cols=150 Identities=18% Similarity=0.172 Sum_probs=106.6
Q ss_pred ccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----c
Q 026740 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----R 147 (234)
Q Consensus 75 ~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~ 147 (234)
.+++++|+++.|++ ..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|+++|+++..... .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEcccCCHHHHhc
Confidence 36899999999986 789999999999999999999999999999999999998 999999999988742100 0
Q ss_pred cCCCChh-------hHHHHHHH--------------H--HHHHHHHHhc--Cce-----EEEecCcccHHHHHHHHHhCC
Q 026740 148 DLSFKAE-------DRVENIRR--------------I--GEVAKLFADA--GVI-----CIACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 148 ~~~~~~~-------~~~~~~~~--------------~--~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ll~ 197 (234)
.+++.++ ...+++.. . ..+...+... ++. ....++.+.+++...+++++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 0111000 11111100 0 0011112211 111 112345566778889999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||+..|+....+.+++.+++
T Consensus 174 ~p~l--llLDEPts~LD~~~~~~i~~~l~~ 201 (271)
T 2ixe_A 174 KPRL--LILDNATSALDAGNQLRVQRLLYE 201 (271)
T ss_dssp CCSE--EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CCCE--EEEECCccCCCHHHHHHHHHHHHH
Confidence 9999 899999999998888888887764
No 22
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=1.4e-22 Score=170.87 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=104.8
Q ss_pred ceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026740 77 AKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (234)
Q Consensus 77 ~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~ 151 (234)
++++|+++.| ++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+++
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 6789999999 67789999999999999999999999999999999999998 99999999998864211 111111
Q ss_pred Chh-------hHHHHHHH-------HHHHHHHHHhcCce----------------EEEecCcccHHHHHHHHHhCCCCCc
Q 026740 152 KAE-------DRVENIRR-------IGEVAKLFADAGVI----------------CIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 152 ~~~-------~~~~~~~~-------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
.++ ...+++.. -..+...+...++. ....++.+.+++...+++++..+.+
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 111 01111100 00111111111110 0123456677788899999999998
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..|+....+.+++.+++
T Consensus 161 --llLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 161 --LMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp --EEEECCSCSSCSSSCCHHHHHHHH
T ss_pred --EEEECCcccCCHHHHHHHHHHHHH
Confidence 899999999999998888877654
No 23
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.86 E-value=6.3e-22 Score=175.29 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=107.7
Q ss_pred cceeeceeeecCCcc--ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc-----cc--c
Q 026740 76 VAKSTNILWHKNSVD--KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GL--N 146 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~-----~~--~ 146 (234)
+++++|++++|++.. +++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .. .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECcccccccCChhh
Confidence 478899999999888 9999999999999999999999999999999999998 999999999988743 11 1
Q ss_pred ccCCCChhh--------HHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026740 147 RDLSFKAED--------RVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 147 ~~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
..+++..++ ..+++.+ -..+..++...++. ....++.+.+++...+++++..+.+
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l 161 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 111111110 1111100 01122233333321 1233456677888999999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHH
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|||++.|+...+..+++.++
T Consensus 162 --LLLDEP~s~LD~~~r~~l~~~l~ 184 (353)
T 1oxx_K 162 --LLLDEPFSNLDARMRDSARALVK 184 (353)
T ss_dssp --EEEESTTTTSCGGGHHHHHHHHH
T ss_pred --EEEECCcccCCHHHHHHHHHHHH
Confidence 89999999999988888877665
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.86 E-value=8.6e-22 Score=175.49 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=107.5
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc------cc--cc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GL--NR 147 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~------~~--~~ 147 (234)
+++++|++++|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.. .. ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-CCccEEEECCEECccccccccCCHhHC
Confidence 4788999999998899999999999999999999999999999999999998 999999999988743 11 11
Q ss_pred cCCCChh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026740 148 DLSFKAE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 148 ~~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
.+++..+ ...+++.+. ..+..++...++. ....++.+.+++...+++++..+.+
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l- 160 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV- 160 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE-
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence 1111111 111111110 0122223322321 1233456677888999999999999
Q ss_pred EEEEeCChhhhhhcchhhHHHHHH
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|||++.|+...+..+++.++
T Consensus 161 -LLLDEP~s~LD~~~r~~l~~~l~ 183 (372)
T 1g29_1 161 -FLMDEPLSNLDAKLRVRMRAELK 183 (372)
T ss_dssp -EEEECTTTTSCHHHHHHHHHHHH
T ss_pred -EEECCCCccCCHHHHHHHHHHHH
Confidence 89999999998888877776664
No 25
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.85 E-value=1.9e-21 Score=171.81 Aligned_cols=146 Identities=15% Similarity=0.172 Sum_probs=106.4
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~~ 154 (234)
++++|++++|++. +++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..... +.+++..+
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCEECCCCchhhCcEEEEec
Confidence 6789999999888 9999999999999999999999999999999999998 999999999998753110 11111111
Q ss_pred --------hHHHHHHHH---------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026740 155 --------DRVENIRRI---------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212 (234)
Q Consensus 155 --------~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~ 212 (234)
...+++.+. ..+..++...++. ....++.+.+++...+++++..+.+ +++|||++.
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l--LLLDEP~s~ 157 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI--LLLDEPLSA 157 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE--EEEESSSTT
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECcccc
Confidence 111222111 1122233333321 1123455667788899999999999 899999999
Q ss_pred hhhcchhhHHHHHH
Q 026740 213 CEARDPKGLYKLAR 226 (234)
Q Consensus 213 l~~R~~~~l~~~~~ 226 (234)
|+...+..+++.++
T Consensus 158 LD~~~~~~l~~~l~ 171 (348)
T 3d31_A 158 LDPRTQENAREMLS 171 (348)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 98888887777664
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.85 E-value=3.7e-21 Score=162.76 Aligned_cols=149 Identities=16% Similarity=0.102 Sum_probs=105.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh--cccCCccEEEEcCccccccc-----ccc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--LHWRGKLTYILDGDNCRHGL-----NRD 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl--l~~p~~G~i~~~g~~v~~~~-----~~~ 148 (234)
+++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++.... ...
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-VERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEECCCCCHHHHHhCc
Confidence 57899999999988999999999999999999999999999999999998 66 89999999998874311 001
Q ss_pred CCCChhh--------HHHHHHH---------------HHHHHHHHHhcCce------EEEe-cCcccHHHHHHHHHhCCC
Q 026740 149 LSFKAED--------RVENIRR---------------IGEVAKLFADAGVI------CIAC-LISPYRKDRDACRSMLPE 198 (234)
Q Consensus 149 ~~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~ll~~ 198 (234)
+++.+++ ..+++.. ...+...+...++. .... ++.+.+++...+++++..
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 1121110 0111110 01122223323321 1123 566677888899999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+ +++|||+..|+......+++.+++
T Consensus 162 p~l--llLDEPts~LD~~~~~~l~~~l~~ 188 (250)
T 2d2e_A 162 PTY--AVLDETDSGLDIDALKVVARGVNA 188 (250)
T ss_dssp CSE--EEEECGGGTTCHHHHHHHHHHHHH
T ss_pred CCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 998 899999999988888888877754
No 27
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=175.91 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=104.8
Q ss_pred ccceeeceeeec--CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026740 75 TVAKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~ 148 (234)
..++++|+++.| ++..+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++..... ..
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCC
Confidence 358899999999 67889999999999999999999999999999999999875 68999999998753210 01
Q ss_pred CCCChh-------hHHHHHHH-----HHHHHHHHHhcCceEE-----E-----------ecCcccHHHHHHHHHhCCCCC
Q 026740 149 LSFKAE-------DRVENIRR-----IGEVAKLFADAGVICI-----A-----------CLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 149 ~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~ll~~~~ 200 (234)
+++..+ ...+++.. -..+...+...++... . .++.+.+++...+++++..+.
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 111111 11111100 0011111111111000 0 145566778889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.|+...+..+++.+++
T Consensus 176 l--LLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 176 I--LLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp E--EEEESHHHHSCHHHHHHHHHHHHT
T ss_pred E--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 9 899999999998888888888775
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.84 E-value=1.2e-20 Score=160.96 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=105.4
Q ss_pred cceeeceeeecC--C---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-ccccC
Q 026740 76 VAKSTNILWHKN--S---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~--~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-~~~~~ 149 (234)
+++++|+++.|+ + +.+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++... ....+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-PTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEECchHHhhhhE
Confidence 478899999997 4 679999999999999999999999999999999999998 9999999999876310 00001
Q ss_pred CCChh---------hHHHHHHHH-----------HHHHHHHHhcCce--E-----EEecCcccHHHHHHHHHhCCCCCce
Q 026740 150 SFKAE---------DRVENIRRI-----------GEVAKLFADAGVI--C-----IACLISPYRKDRDACRSMLPEGDFI 202 (234)
Q Consensus 150 ~~~~~---------~~~~~~~~~-----------~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~ll~~~~l~ 202 (234)
++.++ ...+++... ..+...+...++. . ...++.+.+++...+++++..+.+
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l- 159 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI- 159 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE-
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE-
Confidence 11111 111111110 0122233333332 1 123455667788899999999999
Q ss_pred EEEEeCChhhhhhcchhhHHHHHH
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+++|||+..|+....+.+++.++
T Consensus 160 -llLDEPts~LD~~~~~~l~~~l~ 182 (266)
T 2yz2_A 160 -LILDEPLVGLDREGKTDLLRIVE 182 (266)
T ss_dssp -EEEESTTTTCCHHHHHHHHHHHH
T ss_pred -EEEcCccccCCHHHHHHHHHHHH
Confidence 89999999998888888777665
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.84 E-value=1.1e-20 Score=161.48 Aligned_cols=150 Identities=14% Similarity=0.028 Sum_probs=107.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCccccccc-----cc
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHGL-----NR 147 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~~-----~~ 147 (234)
++++++|+++.|++..+++|+||++++|++++|+||||||||||+|+|+|++ . |++|+|.++|+++.... ..
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-VTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEEGGGSCHHHHHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCcCCHHHHhhC
Confidence 4789999999999889999999999999999999999999999999999984 4 78999999998874211 00
Q ss_pred cCCCChhh--------HHHHHHH-------------------HHHHHHHHHhcCce------EEE-ecCcccHHHHHHHH
Q 026740 148 DLSFKAED--------RVENIRR-------------------IGEVAKLFADAGVI------CIA-CLISPYRKDRDACR 193 (234)
Q Consensus 148 ~~~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~ 193 (234)
.+++.+++ ..+++.. ...+...+...++. ... .++.+.+++...++
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 01111110 0011100 00122233333331 111 25566677888999
Q ss_pred HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++..+.+ +++|||+..|+......+++.+++
T Consensus 178 aL~~~p~l--LlLDEPts~LD~~~~~~l~~~l~~ 209 (267)
T 2zu0_C 178 MAVLEPEL--CILDESDSGLDIDALKVVADGVNS 209 (267)
T ss_dssp HHHHCCSE--EEEESTTTTCCHHHHHHHHHHHHT
T ss_pred HHHhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999 899999999999888888888764
No 30
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.83 E-value=9e-21 Score=159.56 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=103.5
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE 154 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~ 154 (234)
++++|+++.|++ +++++||++++ ++++|+||||||||||+|+|+|+++ |++|+|.++|+++.... ...+++.++
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCchhhCcEEEEcC
Confidence 678999999976 49999999999 9999999999999999999999998 99999999998874211 111222111
Q ss_pred h--------HHHHHHH----------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026740 155 D--------RVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211 (234)
Q Consensus 155 ~--------~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~ 211 (234)
+ ..+++.. ...+...+...++. ....++.+.+++...+++++..+.+ +++|||+.
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l--llLDEPts 155 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL--LLLDEPLS 155 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS--BEEESTTS
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcc
Confidence 1 1111110 01222333333331 1233456677788899999999999 89999999
Q ss_pred hhhhcchhhHHHHHH
Q 026740 212 VCEARDPKGLYKLAR 226 (234)
Q Consensus 212 ~l~~R~~~~l~~~~~ 226 (234)
.|+....+.+++.++
T Consensus 156 ~LD~~~~~~~~~~l~ 170 (240)
T 2onk_A 156 AVDLKTKGVLMEELR 170 (240)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 998888887777664
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.82 E-value=2.7e-20 Score=158.62 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=106.4
Q ss_pred ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-ccccCC-
Q 026740 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLS- 150 (234)
Q Consensus 77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-~~~~~~- 150 (234)
++++|+++.|++ ..+++++||+++ |++++|+||||||||||+|+|+|++ |++|+|.++|+++... ....++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheEE
Confidence 678999999987 789999999999 9999999999999999999999987 7899999999876421 011233
Q ss_pred CChhh------HHHHHHHH--------HHHHHHHHhcCce-E-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026740 151 FKAED------RVENIRRI--------GEVAKLFADAGVI-C-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210 (234)
Q Consensus 151 ~~~~~------~~~~~~~~--------~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~ 210 (234)
+.+++ ..+++... ..+...+...++. . ...++.+.+++...+++++..+.+ +++|||+
T Consensus 79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPt 156 (263)
T 2pjz_A 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI--VGLDEPF 156 (263)
T ss_dssp CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE--EEEECTT
T ss_pred EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCc
Confidence 33332 12222211 0122233333332 1 123455667778899999999999 8999999
Q ss_pred hhhhhcchhhHHHHHHc
Q 026740 211 QVCEARDPKGLYKLARE 227 (234)
Q Consensus 211 ~~l~~R~~~~l~~~~~~ 227 (234)
+.|+....+.+++.+++
T Consensus 157 s~LD~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 157 ENVDAARRHVISRYIKE 173 (263)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99988888888888764
No 32
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.82 E-value=9e-20 Score=148.59 Aligned_cols=151 Identities=83% Similarity=1.329 Sum_probs=123.9
Q ss_pred eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE--EEcCccccccccccCCCChhhHH
Q 026740 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY--ILDGDNCRHGLNRDLSFKAEDRV 157 (234)
Q Consensus 80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i--~~~g~~v~~~~~~~~~~~~~~~~ 157 (234)
+|++|+++...+.+++++..++|++++|+|||||||||++++|++.+. ..|.+ +++|+++.......+++.++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~ 80 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVRHGLNRDLSFKAEDRA 80 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHTTTTTTTCCSSHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchhhhHhhcccCcChHHHH
Confidence 578899999999999999999999999999999999999999999886 34666 99999987655555678888877
Q ss_pred HHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026740 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232 (234)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~ 232 (234)
.++..+..+...++..+...+..+..+.+..++.+++++....+..++++.|.+.+.+|.++++|+..+.|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~ 155 (200)
T 3uie_A 81 ENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKG 155 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCC
Confidence 777777777778888887777777777778888999988877787899999999999999999999999988655
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.82 E-value=3e-20 Score=158.07 Aligned_cols=149 Identities=17% Similarity=0.110 Sum_probs=103.8
Q ss_pred ccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cc
Q 026740 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NR 147 (234)
Q Consensus 75 ~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~ 147 (234)
..++++|+++.|++ ..+++++||++++|++++|+||||||||||+|+|+|+++ | +|+|.++|.++.... ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhc
Confidence 36899999999975 469999999999999999999999999999999999987 6 799999998874211 00
Q ss_pred cCCCChh-------hHHHHHHH------HHHHHHHHHhcCc----------------eEEEecCcccHHHHHHHHHhCCC
Q 026740 148 DLSFKAE-------DRVENIRR------IGEVAKLFADAGV----------------ICIACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 148 ~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ll~~ 198 (234)
.+++.++ ...+++.. ...+...+...++ .....++.+.+++...+++++..
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 94 IIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred cEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 1111111 11111110 0001111111110 01124556677888899999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+ +++|||+..|+......+++.+++
T Consensus 174 p~l--llLDEPts~LD~~~~~~i~~~l~~ 200 (260)
T 2ghi_A 174 PKI--VIFDEATSSLDSKTEYLFQKAVED 200 (260)
T ss_dssp CSE--EEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCE--EEEECccccCCHHHHHHHHHHHHH
Confidence 999 899999999988888877777654
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.82 E-value=3e-20 Score=155.22 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=99.8
Q ss_pred cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026740 76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (234)
Q Consensus 76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~ 153 (234)
+++++|+++.|+ +.++++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|. +.. ......+-+
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~-i~~-v~q~~~~~~ 82 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGR-ISF-CSQFSWIMP 82 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEECSC-EEE-ECSSCCCCS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCccEEEECCE-EEE-EecCCcccC
Confidence 688999999994 5789999999999999999999999999999999999998 99999999984 210 000000000
Q ss_pred hhHHHHHHH--------HHHH------HHHHHhcCce-------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026740 154 EDRVENIRR--------IGEV------AKLFADAGVI-------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212 (234)
Q Consensus 154 ~~~~~~~~~--------~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~ 212 (234)
....+++.. .... ...+...... ....++.+.+++...+++++..+.+ +++|||++.
T Consensus 83 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l--llLDEPts~ 160 (229)
T 2pze_A 83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGY 160 (229)
T ss_dssp BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE--EEEESTTTT
T ss_pred CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECcccC
Confidence 011111100 0000 0111111000 0123455667788899999999999 899999999
Q ss_pred hhhcchhhHHHHH
Q 026740 213 CEARDPKGLYKLA 225 (234)
Q Consensus 213 l~~R~~~~l~~~~ 225 (234)
++....+.+++.+
T Consensus 161 LD~~~~~~i~~~l 173 (229)
T 2pze_A 161 LDVLTEKEIFESC 173 (229)
T ss_dssp SCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH
Confidence 9888888888753
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.81 E-value=4.9e-21 Score=161.99 Aligned_cols=144 Identities=12% Similarity=0.083 Sum_probs=100.5
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----------
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---------- 145 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---------- 145 (234)
+++++|+++. .+++++||++++|++++|+||||||||||+|+|+|+++ |+ |+|.++|+++....
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEE
Confidence 5788999887 68999999999999999999999999999999999998 88 99999998864210
Q ss_pred -cccCC-CChhhHHHHHHH-------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCC-------ceEE
Q 026740 146 -NRDLS-FKAEDRVENIRR-------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGD-------FIEV 204 (234)
Q Consensus 146 -~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~ 204 (234)
..... +......+++.. ...+...+...++. ....++.+.+++...++.++..+. + +
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l--l 155 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL--L 155 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE--E
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE--E
Confidence 00000 000011111110 01122223333321 122345566777788999998888 8 8
Q ss_pred EEeCChhhhhhcchhhHHHHHHc
Q 026740 205 FMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
++|||+..|+....+.+++.+++
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHH
Confidence 99999999988888887776653
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.81 E-value=2.8e-20 Score=156.17 Aligned_cols=146 Identities=15% Similarity=0.196 Sum_probs=101.4
Q ss_pred cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc---CC
Q 026740 76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD---LS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~---~~ 150 (234)
+++++|+++.|+ +..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|. +.. .... ..
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~-i~~-v~Q~~~~~~ 79 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVAIKGS-VAY-VPQQAWIQN 79 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-EEEEEEEECSC-EEE-ECSSCCCCS
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCE-EEE-EcCCCcCCC
Confidence 478999999997 5789999999999999999999999999999999999998 89999999983 210 0000 00
Q ss_pred CChhhHH--------HHHHHHHHHHHHHHhcCc----------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026740 151 FKAEDRV--------ENIRRIGEVAKLFADAGV----------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212 (234)
Q Consensus 151 ~~~~~~~--------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~ 212 (234)
.+..+.. +....+.....+...... .....++.+.+++...+++++..+.+ +++|||+..
T Consensus 80 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPts~ 157 (237)
T 2cbz_A 80 DSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSA 157 (237)
T ss_dssp EEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EEEESTTTT
T ss_pred cCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCcccc
Confidence 0000000 000010011001111111 01134556677888899999999999 899999999
Q ss_pred hhhcchhhHHHHHH
Q 026740 213 CEARDPKGLYKLAR 226 (234)
Q Consensus 213 l~~R~~~~l~~~~~ 226 (234)
|+....+.+++.++
T Consensus 158 LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 158 VDAHVGKHIFENVI 171 (237)
T ss_dssp SCHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHH
Confidence 98888888888774
No 37
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.80 E-value=1e-19 Score=154.16 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=101.8
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccccccCCC
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~~~~~~~ 151 (234)
+++++|+++.|+ +..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.+.. .+. ........+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~~-~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-PIQGKIEVYQ-SIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-CSEEEEEECS-CEEEECSCCCCSSCC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEec-cEEEEcCCCccCCCC
Confidence 588999999998 8889999999999999999999999999999999999998 9999997431 111 000000001
Q ss_pred ChhhHHHH-------------HHHHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026740 152 KAEDRVEN-------------IRRIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213 (234)
Q Consensus 152 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l 213 (234)
+..+.... ......+...+...++. ....++.+.+++...+++++..+.+ +++|||++.|
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--llLDEPts~L 159 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL--ILLDEPTSAL 159 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE--EEESSSSTTS
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccC
Confidence 11110000 00000122223333321 1233456677888899999999999 8999999999
Q ss_pred hhcchhhHHHHHHc
Q 026740 214 EARDPKGLYKLARE 227 (234)
Q Consensus 214 ~~R~~~~l~~~~~~ 227 (234)
+......+++.+++
T Consensus 160 D~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 160 DLANQDIVLSLLID 173 (253)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888887776653
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=4.4e-20 Score=173.46 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=105.0
Q ss_pred cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
.++++|++++|+ +.++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..... ..+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID-PERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC-CSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCcEEEECCEEcccCCHHHHHhhe
Confidence 588999999994 4679999999999999999999999999999999999998 999999999998864210 001
Q ss_pred CCChh-------hHHHHH------------HHHHHH---HHHHHhc--CceEE-----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAE-------DRVENI------------RRIGEV---AKLFADA--GVICI-----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~-------~~~~~~------------~~~~~~---~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.++ ..++++ ...... ....... +.... ..++.+.+++...+++++..+.
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 11100 011111 000000 0111111 11111 2345567788889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+ +++|||++.++....+.+++.+++
T Consensus 500 i--lllDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 500 V--LILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp E--EEEESCCTTSCHHHHHHHHHHHHH
T ss_pred E--EEEECCcccCCHHHHHHHHHHHHH
Confidence 9 899999999988888888877654
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=4.6e-20 Score=173.69 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=103.1
Q ss_pred cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026740 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS 150 (234)
Q Consensus 76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~ 150 (234)
.++++|+++.|+ +.++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..... ..++
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD-VDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC-CCCeEEEECCEEhhhCCHHHHHhceE
Confidence 588999999996 4679999999999999999999999999999999999998 999999999998864110 0011
Q ss_pred CChh-------hHHHHHHHH------HHHHHHHHhcC-----------ceE-E----EecCcccHHHHHHHHHhCCCCCc
Q 026740 151 FKAE-------DRVENIRRI------GEVAKLFADAG-----------VIC-I----ACLISPYRKDRDACRSMLPEGDF 201 (234)
Q Consensus 151 ~~~~-------~~~~~~~~~------~~~~~~~~~~~-----------~~~-~----~~~~~~~~~~~~~~~~ll~~~~l 201 (234)
+.++ ..++++..- ..+.......+ ... + ..++.+.+++...+++++..+.+
T Consensus 433 ~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 433 IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 1111 111111100 00000000000 000 0 12345667778899999999999
Q ss_pred eEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 202 IEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 202 ~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||++.++....+.+++.+++
T Consensus 513 --lllDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 513 --LILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp --EEECCCCTTCCHHHHHHHHHHHHH
T ss_pred --EEEECCccCCCHHHHHHHHHHHHH
Confidence 899999999988887777766653
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.79 E-value=3.7e-20 Score=173.85 Aligned_cols=150 Identities=16% Similarity=0.219 Sum_probs=106.1
Q ss_pred ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026740 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~ 148 (234)
..++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD-VDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEhhhCCHHHHhcC
Confidence 36899999999974 679999999999999999999999999999999999998 99999999998875311 011
Q ss_pred CCCChhh-------HHHHHHHH-------HHHHHHHHhcCce----------------EEEecCcccHHHHHHHHHhCCC
Q 026740 149 LSFKAED-------RVENIRRI-------GEVAKLFADAGVI----------------CIACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 149 ~~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ll~~ 198 (234)
+++.+++ ..+++... ..+.......++. ....++.+.+++...+++++..
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~ 498 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence 1111111 11111100 0011111111110 0123455677788899999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+ +++|||++.++....+.+++.+++
T Consensus 499 p~i--lllDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 499 APV--LILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred CCE--EEEECccccCCHHHHHHHHHHHHH
Confidence 999 899999999998888888877764
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.78 E-value=5.1e-20 Score=172.75 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=102.6
Q ss_pred cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
.++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..... ..+
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-CSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5889999999964 579999999999999999999999999999999999998 999999999998753210 001
Q ss_pred CCChh-------hHHHHHHH---------HHHHH------HHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026740 150 SFKAE-------DRVENIRR---------IGEVA------KLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD 200 (234)
Q Consensus 150 ~~~~~-------~~~~~~~~---------~~~~~------~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~ 200 (234)
++.++ ..++++.. +.... ...... +.. .+ ..++.+.+++...+++++..+.
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 11110 11111100 00000 001100 110 00 1245566778889999999999
Q ss_pred ceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 201 l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+ +++|||++.++....+.+.+.++
T Consensus 498 i--lllDEpts~LD~~~~~~i~~~l~ 521 (578)
T 4a82_A 498 I--LILDEATSALDLESESIIQEALD 521 (578)
T ss_dssp E--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred E--EEEECccccCCHHHHHHHHHHHH
Confidence 9 89999999998877777766654
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.77 E-value=5.8e-19 Score=165.68 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=105.4
Q ss_pred ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026740 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD 148 (234)
Q Consensus 75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~ 148 (234)
..++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..... ..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-CSEEEEEETTEETTTBCHHHHHHT
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC-CCCCeEEECCEEccccCHHHHHhh
Confidence 36899999999973 689999999999999999999999999999999999998 999999999988753110 00
Q ss_pred CCCChh-------hHHHHHHHH-------HHHHHHHHhcCce----------------EEEecCcccHHHHHHHHHhCCC
Q 026740 149 LSFKAE-------DRVENIRRI-------GEVAKLFADAGVI----------------CIACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 149 ~~~~~~-------~~~~~~~~~-------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ll~~ 198 (234)
+++.++ ...+++... ..+.......++. ....++.+.+++...+++++..
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~ 498 (582)
T 3b60_A 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred CeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 111111 111111100 0011111111110 0123456677888899999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+.+ +++|||++.++....+.+++.+++
T Consensus 499 p~i--lllDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 499 SPI--LILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp CSE--EEEETTTSSCCHHHHHHHHHHHHH
T ss_pred CCE--EEEECccccCCHHHHHHHHHHHHH
Confidence 998 899999999988888877776653
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.76 E-value=8.6e-19 Score=164.93 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=103.8
Q ss_pred ceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026740 77 AKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (234)
Q Consensus 77 ~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~ 149 (234)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..... ..+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD-PASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC-CSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCcEEEECCEEhhhCCHHHHHhce
Confidence 889999999974 369999999999999999999999999999999999998 999999999988753110 000
Q ss_pred CCChh-------hHHHHHHH---------HHHHHHHHHhcC-----------c-eEE----EecCcccHHHHHHHHHhCC
Q 026740 150 SFKAE-------DRVENIRR---------IGEVAKLFADAG-----------V-ICI----ACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 150 ~~~~~-------~~~~~~~~---------~~~~~~~~~~~~-----------~-~~~----~~~~~~~~~~~~~~~~ll~ 197 (234)
++.++ ...+++.. -..+.......+ . ..+ ..++.+.+++...+++++.
T Consensus 421 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 11000 11111100 000111111111 0 011 2345667788889999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||++.++....+.+++.+++
T Consensus 501 ~p~i--lllDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 501 NPKI--LLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp CCSE--EEEECCCSSCCHHHHHHHHHHHHH
T ss_pred CCCE--EEEECcccCCCHHHHHHHHHHHHH
Confidence 9999 899999999988888777776654
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.73 E-value=2.7e-18 Score=148.21 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=89.3
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~ 154 (234)
+.++++|+++.+ ..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+ +.. ......+-+.
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~-i~~-v~Q~~~l~~~ 113 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGR-ISF-CSQNSWIMPG 113 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-EEEEEEECCSC-EEE-ECSSCCCCSS
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCE-EEE-EeCCCccCcc
Confidence 468889999863 679999999999999999999999999999999999998 89999999883 210 0000000000
Q ss_pred hHHHHHH-------HHHHH------HHHHHhcCc-------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026740 155 DRVENIR-------RIGEV------AKLFADAGV-------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE 214 (234)
Q Consensus 155 ~~~~~~~-------~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~ 214 (234)
...+++. ..... ...+..... .....++.+.+++...+++++..+.+ +++|||+..|+
T Consensus 114 tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l--llLDEPts~LD 191 (290)
T 2bbs_A 114 TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLD 191 (290)
T ss_dssp BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCC
T ss_pred cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE--EEEECCcccCC
Confidence 1111110 00000 011111110 01134566777888899999999999 89999999998
Q ss_pred hcchhhHHHHH
Q 026740 215 ARDPKGLYKLA 225 (234)
Q Consensus 215 ~R~~~~l~~~~ 225 (234)
......+++.+
T Consensus 192 ~~~~~~i~~~l 202 (290)
T 2bbs_A 192 VLTEKEIFESC 202 (290)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 88888888753
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.72 E-value=1.8e-18 Score=175.22 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=106.2
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc------
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN------ 146 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~------ 146 (234)
-++++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|++. |.+|+|.+||.|+.....
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD-TLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC-CSSSEEEETTEETTTBCHHHHHTT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc-CCCCEEEECCEEhhhCCHHHHHhh
Confidence 5889999999954 469999999999999999999999999999999999998 999999999999864210
Q ss_pred -----cc-------------CCCChh-----hHHHHHHHHHHHHHHHHh-c-Cc-eEE----EecCcccHHHHHHHHHhC
Q 026740 147 -----RD-------------LSFKAE-----DRVENIRRIGEVAKLFAD-A-GV-ICI----ACLISPYRKDRDACRSML 196 (234)
Q Consensus 147 -----~~-------------~~~~~~-----~~~~~~~~~~~~~~~~~~-~-~~-~~~----~~~~~~~~~~~~~~~~ll 196 (234)
++ ++..+. +..+..+.. .+...... + ++ ..+ ..++.+.+++-..||+++
T Consensus 1155 i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a-~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll 1233 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLA-NIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV 1233 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHT-TCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHh-CChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH
Confidence 00 122111 111111110 01111111 1 11 112 234566788889999999
Q ss_pred CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
....+ +++|||++.++....+.+.+.+++
T Consensus 1234 r~~~I--LiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1234 RNPKI--LLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp SCCSE--EEEESCCCSTTSHHHHHHHHHHTT
T ss_pred hCCCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence 99998 899999999988888888777764
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.70 E-value=1e-17 Score=169.78 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=103.7
Q ss_pred cceeeceeeecC---CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc------
Q 026740 76 VAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN------ 146 (234)
Q Consensus 76 ~~~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~------ 146 (234)
-++++|+++.|+ +.++|+|+||++++|+.++|+||||||||||+++|.|++. |.+|+|.+||.+++....
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~-~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD-VLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc-cccCcccCCCccchhccHHHHhhc
Confidence 588999999996 4579999999999999999999999999999999999998 999999999998764210
Q ss_pred -----cc-------------CCCChhhHHHHHHHHHHHH---HHHHhc--C-ceEE----EecCcccHHHHHHHHHhCCC
Q 026740 147 -----RD-------------LSFKAEDRVENIRRIGEVA---KLFADA--G-VICI----ACLISPYRKDRDACRSMLPE 198 (234)
Q Consensus 147 -----~~-------------~~~~~~~~~~~~~~~~~~~---~~~~~~--~-~~~~----~~~~~~~~~~~~~~~~ll~~ 198 (234)
++ ++.......+ +......+ ...... + ...+ ..++.+.+++-.+||+++..
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~-v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~ 572 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGKEGITREE-MVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN 572 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHH-HHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTC
T ss_pred ccccCCcceeeCCchhHHHhhhcccchHHH-HHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccC
Confidence 00 1111001111 11111111 111111 1 1222 23456678888999999999
Q ss_pred CCceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
+.+ +++|+|++.++....+.+.+.+.
T Consensus 573 ~~I--liLDE~tSaLD~~te~~i~~~l~ 598 (1321)
T 4f4c_A 573 PKI--LLLDEATSALDAESEGIVQQALD 598 (1321)
T ss_dssp CSE--EEEESTTTTSCTTTHHHHHHHHH
T ss_pred CCE--EEEecccccCCHHHHHHHHHHHH
Confidence 999 89999999998887665555543
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=4.7e-18 Score=171.84 Aligned_cols=147 Identities=17% Similarity=0.119 Sum_probs=101.4
Q ss_pred cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc----c
Q 026740 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR----D 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~----~ 148 (234)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...... .
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD-PLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC-CSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEHHhCCHHHHHhh
Confidence 5889999999964 469999999999999999999999999999999999998 9999999999987532100 0
Q ss_pred CCCChh-------hHHHHHHH------------HHHH---HHHHHhc--Cce-E----EEecCcccHHHHHHHHHhCCCC
Q 026740 149 LSFKAE-------DRVENIRR------------IGEV---AKLFADA--GVI-C----IACLISPYRKDRDACRSMLPEG 199 (234)
Q Consensus 149 ~~~~~~-------~~~~~~~~------------~~~~---~~~~~~~--~~~-~----~~~~~~~~~~~~~~~~~ll~~~ 199 (234)
+++.++ ..++++.. .... ....... +.. . ...++.+.+++..++++++..+
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 111111 11111111 0000 0001111 000 0 1234566778889999999999
Q ss_pred CceEEEEeCChhhhhhcchhhHHHHH
Q 026740 200 DFIEVFMDVPLQVCEARDPKGLYKLA 225 (234)
Q Consensus 200 ~l~~~~ld~P~~~l~~R~~~~l~~~~ 225 (234)
.+ +++|||++.++....+.+.+.+
T Consensus 546 ~i--liLDEpts~LD~~~~~~i~~~l 569 (1284)
T 3g5u_A 546 KI--LLLDEATSALDTESEAVVQAAL 569 (1284)
T ss_dssp SE--EEEESTTCSSCHHHHHHHHHHH
T ss_pred CE--EEEECCCCCCCHHHHHHHHHHH
Confidence 98 8999999999877666555544
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.68 E-value=8.4e-18 Score=170.00 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=104.7
Q ss_pred cceeeceeeecCCc---cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026740 76 VAKSTNILWHKNSV---DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD 148 (234)
Q Consensus 76 ~~~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~ 148 (234)
.++++|+++.|++. ++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD-PMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC-CSEEEEESSSSCTTSSCHHHHTTS
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEcccCCHHHHHhc
Confidence 58899999999753 69999999999999999999999999999999999998 99999999999876321 011
Q ss_pred CCCChhh-------HHHH--------------HHHHHHH---HHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCC
Q 026740 149 LSFKAED-------RVEN--------------IRRIGEV---AKLFADA--GV-ICI----ACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 149 ~~~~~~~-------~~~~--------------~~~~~~~---~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~ 197 (234)
+++.+++ .+++ +...... ....... +. ..+ ..++.+.+++...+++++.
T Consensus 1109 i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~ 1188 (1284)
T 3g5u_A 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188 (1284)
T ss_dssp CEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH
T ss_pred eEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc
Confidence 1111111 0111 1000000 0111111 00 011 2345667788889999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||+..++....+.+++.+++
T Consensus 1189 ~p~i--LiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1189 QPHI--LLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp CCSS--EEEESCSSSCCHHHHHHHHHHHHH
T ss_pred CCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999 899999999988888888777754
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.67 E-value=1.1e-16 Score=148.89 Aligned_cols=146 Identities=14% Similarity=0.082 Sum_probs=102.5
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc---cCC
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR---DLS 150 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~---~~~ 150 (234)
.++++++++++.|++. .++.+||++++||+++|+||||||||||+|+|+|+++ |++|+|.+++..+...... ...
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~i~~~~q~~~~~~~ 344 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEKQILSYKPQRIFPNYD 344 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSBCCEESSCCCEEEECSSCCCCCS
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCeeeEeechhcccccC
Confidence 3578899999999875 4777899999999999999999999999999999998 9999999888765321100 001
Q ss_pred CChhhHHHHHHHH---------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026740 151 FKAEDRVENIRRI---------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216 (234)
Q Consensus 151 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R 216 (234)
.+.. +++... ..+..++...++. ....++.+.+++..++++++..+.+ +++|||+..|+..
T Consensus 345 ~tv~---~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l--LlLDEPT~gLD~~ 419 (538)
T 3ozx_A 345 GTVQ---QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL--YVLDQPSSYLDVE 419 (538)
T ss_dssp SBHH---HHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHH
T ss_pred CCHH---HHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHH
Confidence 1111 111110 0011111112221 1233455667788899999999999 8999999999888
Q ss_pred chhhHHHHHH
Q 026740 217 DPKGLYKLAR 226 (234)
Q Consensus 217 ~~~~l~~~~~ 226 (234)
....+++.++
T Consensus 420 ~~~~i~~~l~ 429 (538)
T 3ozx_A 420 ERYIVAKAIK 429 (538)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777765
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.64 E-value=5.1e-17 Score=151.19 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=96.2
Q ss_pred eceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE---------EEcCcccccc-----
Q 026740 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG----- 144 (234)
Q Consensus 80 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i---------~~~g~~v~~~----- 144 (234)
+|++++|++. .+++++| ++++||+++|+||||||||||+|+|+|++. |++|++ .++|.++...
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 6899999876 4899999 999999999999999999999999999998 888985 3456543210
Q ss_pred -ccccCCC-------Chh----hHHHHHHHH---HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 145 -LNRDLSF-------KAE----DRVENIRRI---GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 145 -~~~~~~~-------~~~----~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
....+++ .+. ...+.+... ..+..++...++. ....++.+.++...++++++..+.+ +
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~l--L 180 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATF--Y 180 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 0000000 000 111111100 0122233333321 1233456677888999999999999 8
Q ss_pred EEeCChhhhhhcchhhHHHHHH
Q 026740 205 FMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++|||++.|+......+++.++
T Consensus 181 lLDEPTs~LD~~~~~~l~~~L~ 202 (538)
T 1yqt_A 181 FFDEPSSYLDIRQRLNAARAIR 202 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHH
Confidence 9999999998887777777664
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.63 E-value=4.8e-16 Score=146.42 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=101.7
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccccccCC
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLS 150 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~~~~~~ 150 (234)
.++++++|+++.|++. .++.+||++++||+++|+||||||||||+|+|+|+++ |++|+|.+. ..+. ........
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~-~~i~~v~Q~~~~~~~ 431 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWD-LTVAYKPQYIKAEYE 431 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCCC-CCEEEECSSCCCCCS
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEEe-eEEEEEecCccCCCC
Confidence 3578999999999875 5889999999999999999999999999999999998 899998763 1111 00000012
Q ss_pred CChhhHHHHH-H-HH---HHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhh
Q 026740 151 FKAEDRVENI-R-RI---GEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (234)
Q Consensus 151 ~~~~~~~~~~-~-~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~ 220 (234)
++..+..... . .. ..+..++...++ .....++.+.+++..+++.++..+.+ +++|||+..|+......
T Consensus 432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l--LlLDEPt~~LD~~~~~~ 509 (607)
T 3bk7_A 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLA 509 (607)
T ss_dssp SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHH
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCccCCCHHHHHH
Confidence 2222221111 0 00 011122222222 11233455667778899999999998 89999999998888888
Q ss_pred HHHHHHc
Q 026740 221 LYKLARE 227 (234)
Q Consensus 221 l~~~~~~ 227 (234)
+++.+++
T Consensus 510 l~~~l~~ 516 (607)
T 3bk7_A 510 VSRAIRH 516 (607)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.63 E-value=5.1e-16 Score=144.41 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=99.9
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccccccCCC
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSF 151 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~~~~~~~ 151 (234)
++++++|+++.|++. .++.+||++++||+++|+||||||||||+|+|+|+++ |++|+|.+. ..+. .........
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~-~~i~~v~Q~~~~~~~~ 362 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEWD-LTVAYKPQYIKADYEG 362 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCCC-CCEEEECSSCCCCCSS
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEC-ceEEEEecCCcCCCCC
Confidence 578999999999875 5889999999999999999999999999999999998 899998762 1111 000000112
Q ss_pred ChhhHHHHH-H-HH---HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhH
Q 026740 152 KAEDRVENI-R-RI---GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (234)
Q Consensus 152 ~~~~~~~~~-~-~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l 221 (234)
+..+..... . .. ..+...+..+++. ....++.+.++....++.++..+.+ +++|||+..|+......+
T Consensus 363 tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l--LlLDEPt~~LD~~~~~~i 440 (538)
T 1yqt_A 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAV 440 (538)
T ss_dssp BHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHHHHHHH
Confidence 222221111 0 00 0111122222221 1123455667777889999999998 899999999988888888
Q ss_pred HHHHH
Q 026740 222 YKLAR 226 (234)
Q Consensus 222 ~~~~~ 226 (234)
++.++
T Consensus 441 ~~~l~ 445 (538)
T 1yqt_A 441 SRAIR 445 (538)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.63 E-value=2.6e-16 Score=154.11 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=59.1
Q ss_pred ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026740 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (234)
Q Consensus 75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g 138 (234)
++++++|+++.|++ +++++|+||++++|++++|+||||||||||+|+|+|++. |++|+|++++
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-P~sG~I~~~~ 734 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-CSEEEEEECT
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEcC
Confidence 47999999999965 679999999999999999999999999999999999998 9999999975
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.63 E-value=5.5e-17 Score=152.78 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=96.4
Q ss_pred eceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE---------EEcCcccccc-----
Q 026740 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG----- 144 (234)
Q Consensus 80 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i---------~~~g~~v~~~----- 144 (234)
+|++++|++. .+++++| ++++||+++|+||||||||||+|+|+|++. |++|++ .++|.++...
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-PNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-CCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-CCCCccccccchhhheeCCEehhhhhhhhh
Confidence 8999999876 4899999 999999999999999999999999999998 899985 3456543210
Q ss_pred -ccccCC----CC---h----hhHHHHHHHH---HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026740 145 -LNRDLS----FK---A----EDRVENIRRI---GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV 204 (234)
Q Consensus 145 -~~~~~~----~~---~----~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 204 (234)
....++ .. + ....+.+... ..+..++...++. ....++.+.+++..++++++..+.+ +
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~l--L 250 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHF--Y 250 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 000000 00 0 0111111000 0112223333321 1223456677888999999999999 8
Q ss_pred EEeCChhhhhhcchhhHHHHHH
Q 026740 205 FMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 205 ~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++|||++.|+......+++.++
T Consensus 251 lLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 251 FFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHH
Confidence 9999999998887777777665
No 55
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.59 E-value=3.3e-15 Score=139.12 Aligned_cols=136 Identities=40% Similarity=0.621 Sum_probs=77.1
Q ss_pred eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EE-EEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcC
Q 026740 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG 174 (234)
Q Consensus 97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (234)
..+++|++++|+|+||||||||+++|++.+. +.+| .+ +++|+++.......++++..++..+++.+..+...+....
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~-~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~ 442 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLM-EMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNR 442 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHH-TTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhc-ccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3688999999999999999999999999998 7775 67 5999887543334455666666555554434333333333
Q ss_pred ceEEEecCcccHHHHHHHHHhCCCCC-ceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 175 VICIACLISPYRKDRDACRSMLPEGD-FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
...+.....+....++.++++++.++ +..++++.|.+.|.+|+++++|+..+.++++++
T Consensus 443 ~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l 502 (552)
T 3cr8_A 443 GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEF 502 (552)
T ss_dssp CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-------------------------
T ss_pred CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHH
Confidence 44444333344566777888888776 456899999999999999999998777776654
No 56
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.54 E-value=3.8e-16 Score=123.22 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=57.4
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
++..++++.|++..+++++||++++|++++|+||||||||||+|+|+|++ |.+|+|.++|.++.
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV 71 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence 34456788888888999999999999999999999999999999999988 67899999998874
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.53 E-value=6.5e-15 Score=140.21 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=77.9
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHH---------------------HHHHhhcccCC-------ccEEEEcCc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA---------------------CALSQALHWRG-------KLTYILDGD 139 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLl---------------------r~l~gll~~p~-------~G~i~~~g~ 139 (234)
...+|+|+||+|++||+++|+||||||||||+ +++.++.. |+ .+.|.+++.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccceEecCc
Confidence 45789999999999999999999999999998 88888776 77 455666665
Q ss_pred cccccccccCCCChh---------------------------hHHHHHHHH--------------------HHHHHHHHh
Q 026740 140 NCRHGLNRDLSFKAE---------------------------DRVENIRRI--------------------GEVAKLFAD 172 (234)
Q Consensus 140 ~v~~~~~~~~~~~~~---------------------------~~~~~~~~~--------------------~~~~~~~~~ 172 (234)
+........+++..+ ...+++... ......+..
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp C-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 443211000000000 000000000 000001111
Q ss_pred cCc------eEEEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 173 AGV------ICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 173 ~~~------~~~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.++ .....++.+.+++..++++++..+. + +++|||+..|+......+++.+++
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~l--LlLDEPtsgLD~~~~~~l~~~l~~ 249 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL--YVLDEPSIGLHQRDNDRLIATLKS 249 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCE--EEEECTTTTCCGGGHHHHHHHHHH
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCE--EEEECCccCCCHHHHHHHHHHHHH
Confidence 111 1122345566778889999998887 7 899999999999888888876653
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.4e-15 Score=141.63 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=91.8
Q ss_pred eceeeecCCcc-ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE-----------EEcCccccccc--
Q 026740 80 TNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRHGL-- 145 (234)
Q Consensus 80 ~~l~~~~~~~~-~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i-----------~~~g~~v~~~~-- 145 (234)
+|++++|+... .+++++ .+++||+++|+||||||||||+|+|+|++. |++|+| ++.|.++....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhH
Confidence 46788897554 456665 689999999999999999999999999998 999987 33343321100
Q ss_pred --cccC------CCChh----------hHHHHHHH-----HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026740 146 --NRDL------SFKAE----------DRVENIRR-----IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP 197 (234)
Q Consensus 146 --~~~~------~~~~~----------~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~ 197 (234)
...+ .+... ...+.+.. ...+..++...++. ....++.+.++..+++++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 0000 00000 00000000 00122222222221 123345567788899999999
Q ss_pred CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
.+.+ +++|||++.|+......+++.+++
T Consensus 239 ~p~l--lllDEPts~LD~~~~~~l~~~l~~ 266 (608)
T 3j16_B 239 EADV--YMFDEPSSYLDVKQRLNAAQIIRS 266 (608)
T ss_dssp CCSE--EEEECTTTTCCHHHHHHHHHHHHG
T ss_pred CCCE--EEEECcccCCCHHHHHHHHHHHHH
Confidence 9998 899999999988888788877764
No 59
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.51 E-value=3.5e-15 Score=118.69 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=61.9
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHH------------HHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHH
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLAC------------ALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR 161 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr------------~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~ 161 (234)
|+||++++||+++|+||||||||||+| .+.|++. +..|.+.+.+. ..+...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~-~~~~~~~~~~~----------------~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMS-DDENDQTVTGA----------------AFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHC-SSTTCGGGHHH----------------HHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhc-CcccchhhHHH----------------HHHHHH
Confidence 689999999999999999999999999 5555554 33332111110 001111
Q ss_pred HHHHHHHHHHhcCceEEEec----CcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026740 162 RIGEVAKLFADAGVICIACL----ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217 (234)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~ 217 (234)
.........+....... ....++....+++++..+.+ +++|+|++.|+.+.
T Consensus 64 ---~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~--lllDEPt~~Ld~~~ 118 (171)
T 4gp7_A 64 ---YIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVA--VVFNLPEKVCQERN 118 (171)
T ss_dssp ---HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEE--EEECCCHHHHHHHH
T ss_pred ---HHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEE--EEEeCCHHHHHHHH
Confidence 11111112222222221 22335556778888877777 89999999998883
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.49 E-value=8.2e-14 Score=136.53 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=95.0
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh-cc-cC--CccEEEEcCccccccccccCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-LH-WR--GKLTYILDGDNCRHGLNRDLSF 151 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl-l~-~p--~~G~i~~~g~~v~~~~~~~~~~ 151 (234)
.+...|+++.|+++.+++++||++++|++++|+||||||||||+|+|+|- +. .+ ....+.+-.++..... ..+
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~---~~l 511 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTH---SDT 511 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCC---TTS
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccc---cCC
Confidence 45556999999999999999999999999999999999999999999952 11 01 1111222222210000 001
Q ss_pred ChhhHHHH--HHHHHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHH
Q 026740 152 KAEDRVEN--IRRIGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (234)
Q Consensus 152 ~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~ 223 (234)
+..+.... ......+...+..+++. ....++.+.+++..+++.++..+.+ +++|||++.|+....+.+++
T Consensus 512 tv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l--LLLDEPTs~LD~~~~~~l~~ 589 (986)
T 2iw3_A 512 SVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI--LLLDEPTNHLDTVNVAWLVN 589 (986)
T ss_dssp BHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE--EEEESTTTTCCHHHHHHHHH
T ss_pred cHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHHHHHHHH
Confidence 11111000 00001222233333331 2234566778888999999999999 89999999999888888998
Q ss_pred HHHc
Q 026740 224 LARE 227 (234)
Q Consensus 224 ~~~~ 227 (234)
.+++
T Consensus 590 ~L~~ 593 (986)
T 2iw3_A 590 YLNT 593 (986)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8876
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.1e-13 Score=130.22 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=90.1
Q ss_pred eceeeecCC-ccccccceeeecCC-----EEEEEEcCCCCcHHHHHHHHHhhcccCCccEE------EEcCccccccccc
Q 026740 80 TNILWHKNS-VDKRDRQQLLQQKG-----CVIWITGLSGSGKSTLACALSQALHWRGKLTY------ILDGDNCRHGLNR 147 (234)
Q Consensus 80 ~~l~~~~~~-~~~l~~vs~~i~~G-----e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i------~~~g~~v~~~~~~ 147 (234)
.++++.|++ ..+++++||++.+| |+++|+||||||||||+|+|+|+++ |++|+. .+-.++....
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-p~~G~~~~~~~i~~~~q~~~~~--- 425 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQDIPKLNVSMKPQKIAPK--- 425 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-CSBCCCCCSCCEEEECSSCCCC---
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-CCCCcCccCCcEEEeccccccc---
Confidence 566777865 45799999999999 7899999999999999999999998 888862 2211221100
Q ss_pred cCCCChhhHHHH-HH----HHHHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026740 148 DLSFKAEDRVEN-IR----RIGEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217 (234)
Q Consensus 148 ~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~ 217 (234)
...+..+.... .. .......++...++ .....++.+.+++..++++++..+.+ +++|||+..|+...
T Consensus 426 -~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~l--LlLDEPT~gLD~~~ 502 (608)
T 3j16_B 426 -FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADI--YLIDEPSAYLDSEQ 502 (608)
T ss_dssp -CCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSE--EEECCTTTTCCHHH
T ss_pred -CCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCCCCCHHH
Confidence 00111111000 00 00001111122221 12234556677788899999999999 89999999998877
Q ss_pred hhhHHHHHH
Q 026740 218 PKGLYKLAR 226 (234)
Q Consensus 218 ~~~l~~~~~ 226 (234)
...+++.++
T Consensus 503 ~~~i~~ll~ 511 (608)
T 3j16_B 503 RIICSKVIR 511 (608)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776665
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.42 E-value=8.6e-14 Score=129.38 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=89.2
Q ss_pred ceeeecCCccccccceee-ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE-----------EEcCccccccc---
Q 026740 81 NILWHKNSVDKRDRQQLL-QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRHGL--- 145 (234)
Q Consensus 81 ~l~~~~~~~~~l~~vs~~-i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i-----------~~~g~~v~~~~--- 145 (234)
+.+.+||... ++-..+. +++||+++|+||||||||||+|+|+|++. |++|+| .++|.++....
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4566776332 2222333 56999999999999999999999999998 899988 56666542100
Q ss_pred ---c----ccCCCChh-------hHHHHHHHH---HHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceE
Q 026740 146 ---N----RDLSFKAE-------DRVENIRRI---GEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIE 203 (234)
Q Consensus 146 ---~----~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~ 203 (234)
. ..+.+... ...+.+... ..+..++...++ ..+..++.+.++...++++++..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i-- 159 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV-- 159 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE--
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence 0 00011000 000111000 011122222222 12233456677888999999999999
Q ss_pred EEEeCChhhhhhcchhhHHHHHHc
Q 026740 204 VFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 204 ~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||++.|+......+++.+++
T Consensus 160 lllDEPts~LD~~~~~~l~~~l~~ 183 (538)
T 3ozx_A 160 YIFDQPSSYLDVRERMNMAKAIRE 183 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHH
Confidence 899999999988888888877664
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.41 E-value=3.9e-13 Score=127.95 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=32.9
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHH
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~ 123 (234)
...+|+|+||+|++||+++|+||||||||||+++|.
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 346899999999999999999999999999998764
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.37 E-value=1.2e-14 Score=119.64 Aligned_cols=130 Identities=15% Similarity=0.017 Sum_probs=72.6
Q ss_pred eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc---cccccCCCChhhHHHHH
Q 026740 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENI 160 (234)
Q Consensus 84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~---~~~~~~~~~~~~~~~~~ 160 (234)
+.|++..+++++ ++|++++|+||||||||||+++|+|+ . |++|+|.. .++.. .....+++.+++..+++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl 79 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKI 79 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCHHHHH
Confidence 346667788885 89999999999999999999999998 7 89999843 22211 11123455555432222
Q ss_pred -HHHHH-HHHHHHhcCc---eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 161 -RRIGE-VAKLFADAGV---ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 161 -~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..... .......... ........+.++....++.++..+.+ +++|||+.. ....+++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~l--llLDEPts~----~~~~l~~~l~~ 145 (208)
T 3b85_A 80 DPYLRPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAF--VILDEAQNT----TPAQMKMFLTR 145 (208)
T ss_dssp CTTTHHHHHHHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEE--EEECSGGGC----CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCE--EEEeCCccc----cHHHHHHHHHH
Confidence 11000 0000000000 00000011333334556677777777 899999999 55556655543
No 65
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.35 E-value=1e-11 Score=98.66 Aligned_cols=129 Identities=57% Similarity=1.015 Sum_probs=85.3
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceE
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC 177 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (234)
++|++++|+|++||||||++++|++.+. + .| .+.++++.++.......++..+++..+++++.....++.+.+...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-~-~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-C-HGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVC 80 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-H-TTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-h-CCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEE
Confidence 4799999999999999999999999886 3 45 778888877654333345665666566655544444554555544
Q ss_pred EEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcchhhHHHHHHcCcC
Q 026740 178 IACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKLAREGKV 230 (234)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~ 230 (234)
...+..+....++.+++++...+ ...++++.|.+.+.+|..+.+|+..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~ 135 (179)
T 2pez_A 81 ITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEI 135 (179)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSS
T ss_pred EEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccc
Confidence 44444343323333333332222 245899999999999988888877766544
No 66
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.33 E-value=4.5e-13 Score=118.21 Aligned_cols=64 Identities=25% Similarity=0.091 Sum_probs=59.3
Q ss_pred ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
+.++.+++++.|+ +..+++++ |++.+|++++|+||||||||||+++|+|++. |+.|.|.+.|++
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-ADIIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCC
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEeccc
Confidence 4688899999998 78899999 9999999999999999999999999999998 899999998865
No 67
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.32 E-value=8e-14 Score=125.53 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=82.8
Q ss_pred CccccccceeeecCCE--------------------EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--
Q 026740 88 SVDKRDRQQLLQQKGC--------------------VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-- 145 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge--------------------~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-- 145 (234)
...+++++||++++|+ +++|+||||||||||+|+|+|++. |++|+|.++|.+++...
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t~~~~v 113 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVTMERHP 113 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC----CCCEE
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecceeEEe
Confidence 3568999999999999 999999999999999999999988 89999999887642100
Q ss_pred -----c-c----c-CCCCh--hhHHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCC----------CCCce
Q 026740 146 -----N-R----D-LSFKA--EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP----------EGDFI 202 (234)
Q Consensus 146 -----~-~----~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~----------~~~l~ 202 (234)
. . + .++.. ....+.+. .+. +.+...........+.+++...++.+.. .+++
T Consensus 114 ~q~~~~~~ltv~D~~g~~~~~~~~~~~L~---~~~--L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl- 187 (413)
T 1tq4_A 114 YKHPNIPNVVFWDLPGIGSTNFPPDTYLE---KMK--FYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS- 187 (413)
T ss_dssp EECSSCTTEEEEECCCGGGSSCCHHHHHH---HTT--GGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH-
T ss_pred ccccccCCeeehHhhcccchHHHHHHHHH---HcC--CCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc-
Confidence 0 0 0 11111 11111111 111 1222222222222236677777777766 4444
Q ss_pred EEEEeCChhhhhhcchhhHHHHHHc
Q 026740 203 EVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 203 ~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
+++|||+..++...+..+++.+++
T Consensus 188 -llLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 188 -DITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp -HHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred -cccCcccccCCHHHHHHHHHHHHH
Confidence 578999999988887776665543
No 68
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.31 E-value=5.4e-13 Score=121.13 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=59.6
Q ss_pred ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
+.++.+++++.|+ +..+++++ |++.+|++++|+||||||||||+++|+|+.. |+.|.|.++|+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~~~G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-ADVIVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESC
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEece
Confidence 4788999999997 78899999 9999999999999999999999999999988 89999999998
No 69
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.31 E-value=7.7e-12 Score=102.17 Aligned_cols=138 Identities=59% Similarity=0.934 Sum_probs=90.3
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEcCccccccccccCCCChhhHHHHHHHHHHHHH
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAK 168 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (234)
....-.+.+++|.+++|+|++||||||+++.|++.+. |..| .+.++++.++........+...++..+++.+.....
T Consensus 14 ~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~ 92 (211)
T 1m7g_A 14 RSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAK 92 (211)
T ss_dssp HHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-cccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHH
Confidence 3444457788999999999999999999999999887 5677 899998887654333334554555555544333222
Q ss_pred HHHhcCceEEEecCcccHHHHHHHHHhCCC--------CCceEEEEeCChhhhhhcchhhHHHHHHcCc
Q 026740 169 LFADAGVICIACLISPYRKDRDACRSMLPE--------GDFIEVFMDVPLQVCEARDPKGLYKLAREGK 229 (234)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--------~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~ 229 (234)
.....+..++..+...+...++.++++... .....++++.|.+.+.+|..+.++...+++.
T Consensus 93 ~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~ 161 (211)
T 1m7g_A 93 LFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGV 161 (211)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTS
T ss_pred HHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcc
Confidence 222334444444443334455555554431 1134579999999999998777777777654
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.30 E-value=7.7e-13 Score=115.94 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=47.7
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
..+++++||.+++|++++|+||||||||||+++|+|+++ |++|.|.++|.+
T Consensus 158 ~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~ 208 (330)
T 2pt7_A 158 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSC
T ss_pred HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCee
Confidence 347899999999999999999999999999999999998 899999999865
No 71
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.30 E-value=2.3e-13 Score=118.02 Aligned_cols=58 Identities=17% Similarity=0.016 Sum_probs=52.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g 138 (234)
.++++|+++.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+|...+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v 158 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFA 158 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGG
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEe
Confidence 478899999998 78999999999999999999999999999999999988 58887643
No 72
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.28 E-value=4.6e-11 Score=95.40 Aligned_cols=134 Identities=38% Similarity=0.713 Sum_probs=85.4
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE-EEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcC
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG 174 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (234)
.+...+|.+++|+|++||||||+++.|+..+. ...+.+ .++++.++.....+.++...++..++..+......+...+
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g 85 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-KEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNG 85 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCC
Confidence 34567899999999999999999999999887 444554 6777776543333345666666555544333333333445
Q ss_pred ceEEEecCcccHHHHHHHHHhCCCC--CceEEEEeCChhhhhhcchhhHHHHHHcCcC
Q 026740 175 VICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKV 230 (234)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~ll~~~--~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~ 230 (234)
...+..........++.+++++... ....++++.|.+.+.+|..+++++..+.+.+
T Consensus 86 ~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~ 143 (186)
T 2yvu_A 86 VIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGEL 143 (186)
T ss_dssp CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCC
T ss_pred CEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcch
Confidence 4444443333434445555544332 2345799999999999987777776555443
No 73
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.25 E-value=1.7e-12 Score=118.79 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=49.7
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~ 143 (234)
..+++++||++++ ++++|+||||||||||+++|+|++. |++|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEccc
Confidence 4679999999999 9999999999999999999999998 999999999998863
No 74
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.25 E-value=2.3e-12 Score=106.24 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=33.4
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
..-|+|+||++++|++++|+||||||||||+++|+|++ | |.|.+ |.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~~ 58 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSCT 58 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCEE
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEE-eeccc
Confidence 45689999999999999999999999999999999977 4 88998 76654
No 75
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.25 E-value=4.9e-13 Score=117.51 Aligned_cols=67 Identities=24% Similarity=0.131 Sum_probs=61.9
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+++++++++.|+...+++++||++.+|++++|+|+||||||||+++|+|++. |.+|.|.+.+.++.
T Consensus 28 ~~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 28 TLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECGG
T ss_pred HHHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEEcCc
Confidence 46788899999988889999999999999999999999999999999999998 88999999988774
No 76
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.25 E-value=1.6e-12 Score=110.28 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=50.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCcccc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCR 142 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~~v~ 142 (234)
+++++++++. .+++++| +++|++++|+||||||||||+++|+|++. |. +|.|.++|+++.
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIE 65 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-HHCCCEEEEEESSCC
T ss_pred CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-CCCCCEEEEcCCcce
Confidence 3455666543 5789999 99999999999999999999999999998 76 899999998764
No 77
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.24 E-value=9.1e-12 Score=111.51 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=35.7
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+...+++++|++.+| +++|+|+||||||||+++|++++.
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999 999999999999999999988774
No 78
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.24 E-value=4.6e-11 Score=112.47 Aligned_cols=153 Identities=53% Similarity=0.963 Sum_probs=99.3
Q ss_pred eceeeecCCccccccceeeec----CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026740 80 TNILWHKNSVDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (234)
Q Consensus 80 ~~l~~~~~~~~~l~~vs~~i~----~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~ 155 (234)
.|+.|+-..+..-+.-...-+ +|.+++|+|++||||||+++.|+..+...+...+.++++.++........++..+
T Consensus 26 ~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~d 105 (630)
T 1x6v_B 26 TNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED 105 (630)
T ss_dssp --------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHH
T ss_pred ccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhh
Confidence 355555443333333333233 7889999999999999999999987742233467888888776544444566666
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026740 156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~ 232 (234)
+.++++.+..+...+...+...+..+..+.+..++.+++++...+ +..++++.|.+.+.+|..+++|+..+++.+..
T Consensus 106 ree~~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~ 184 (630)
T 1x6v_B 106 REENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG 184 (630)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHH
Confidence 777777665555555566666666655555556667777665443 45689999999999999999999888776543
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.23 E-value=2.5e-12 Score=119.12 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=56.2
Q ss_pred cceeeceeeecCCcccccccee-eecCCEEEEEEcCCCCcHHHHHHH--HHhhcccCCccEEEEcCccc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACA--LSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~-~i~~Ge~~~liG~nGsGKSTLlr~--l~gll~~p~~G~i~~~g~~v 141 (234)
+++.+++.+.+++.++|++++| .+++|++++|+||||||||||+++ ++|+++ |++|.|+++|++.
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEET 79 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 4555666666778899999999 999999999999999999999999 789887 7899999999773
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.23 E-value=4.2e-13 Score=122.53 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=54.0
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-E-EEEcCc
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-T-YILDGD 139 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~-i~~~g~ 139 (234)
.++++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|++. |.+| + |+++|+
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-p~~G~~pI~vdg~ 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLD 176 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECC
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-ccCCceeEEEcCC
Confidence 35788999999985 7999999999999999999999999999999998 8999 8 999984
No 81
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.23 E-value=5.3e-12 Score=122.39 Aligned_cols=47 Identities=32% Similarity=0.379 Sum_probs=41.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHH-HHhhc
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA-LSQAL 126 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~-l~gll 126 (234)
+.++++++++ ..|+|+||+|++|++++|+|+||||||||+++ |+|++
T Consensus 501 ~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 501 GWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp CEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 4688888875 26999999999999999999999999999997 77765
No 82
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.22 E-value=5.4e-11 Score=111.30 Aligned_cols=135 Identities=39% Similarity=0.648 Sum_probs=103.6
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceE
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC 177 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (234)
-++|.+++|.|++||||||+++.|+..+...+ ...+.++++.++..+..+.++...++.++++++..+...+...+..+
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~V 472 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV 472 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEE
Confidence 46788999999999999999999998775211 22678888887655555556777777777777666766666677777
Q ss_pred EEecCcccHHHHHHHHHhCCCCC-ceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026740 178 IACLISPYRKDRDACRSMLPEGD-FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT 233 (234)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ll~~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~ 233 (234)
+..+..+.+..++.+++++...+ +..++++.|.+.|.+|+.+++|++.+++++.++
T Consensus 473 I~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~ 529 (573)
T 1m8p_A 473 IAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGF 529 (573)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSC
T ss_pred EEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHH
Confidence 77776666677777777766544 456899999999999999999998888877654
No 83
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.22 E-value=2e-11 Score=101.19 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=42.7
Q ss_pred ceeeceeeecCCccccccce-eeecCCEEEEEEcCCCCcHHHHHHHHH--hhcccCCccEEEEcCcc
Q 026740 77 AKSTNILWHKNSVDKRDRQQ-LLQQKGCVIWITGLSGSGKSTLACALS--QALHWRGKLTYILDGDN 140 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs-~~i~~Ge~~~liG~nGsGKSTLlr~l~--gll~~p~~G~i~~~g~~ 140 (234)
++++.++..+. .++++- =.+++|++++|+||||||||||+++|+ +++. +..|.+++++.+
T Consensus 7 ~~~~~i~tg~~---~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~ 69 (251)
T 2ehv_A 7 QPVRRVKSGIP---GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE 69 (251)
T ss_dssp -CCCEECCSCT---TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred cccceeecCCH---hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 34444544443 344431 168999999999999999999999999 6545 567777777654
No 84
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.22 E-value=6.8e-11 Score=95.73 Aligned_cols=119 Identities=24% Similarity=0.218 Sum_probs=64.6
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCChh--hHHHHHHHHHHH
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKAE--DRVENIRRIGEV 166 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~~--~~~~~~~~~~~~ 166 (234)
+.+..++.++|++++|+||||||||||+++|++.+ |.+.++++++.... ....++..+ .....+..+...
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 33344667899999999999999999999999976 77899998874210 001123222 222222222222
Q ss_pred HHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026740 167 AKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217 (234)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~ 217 (234)
.......+...+.......+..++.+.++.. .+..++++.|.+.+.+|.
T Consensus 94 ~~~~~~~g~~viid~~~~~~~~~~~l~~~~~--~~~vv~l~~~~e~l~~Rl 142 (200)
T 4eun_A 94 MDARADAGVSTIITCSALKRTYRDVLREGPP--SVDFLHLDGPAEVIKGRM 142 (200)
T ss_dssp HHHHHHTTCCEEEEECCCCHHHHHHHTTSSS--CCEEEEEECCHHHHHHHH
T ss_pred HHHHHhcCCCEEEEchhhhHHHHHHHHHhCC--ceEEEEEeCCHHHHHHHH
Confidence 2222222322233333334455555555443 334478999999988774
No 85
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.19 E-value=5.8e-12 Score=109.09 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=49.1
Q ss_pred eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
..++....+.++||++++|++++|+||||||||||++.|+|++. |.+|+|.+.|.|+.
T Consensus 82 ~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 82 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTF 139 (302)
T ss_dssp HHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCS
T ss_pred HHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeeccc
Confidence 33444444567899999999999999999999999999999998 88999999998864
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.17 E-value=8.1e-11 Score=95.84 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=26.1
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++.| .++++|++++|+||||||||||+|+|+|+++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45666 6899999999999999999999999999874
No 87
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.15 E-value=4.6e-12 Score=109.78 Aligned_cols=65 Identities=20% Similarity=0.053 Sum_probs=56.6
Q ss_pred ccceeeceeeecCCccccccceeee-------------------cCCEEEEEEcCCCCcHHHHHHHHHhhccc-CCccEE
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQ-------------------QKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTY 134 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i-------------------~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i 134 (234)
..++++++++.| .++++++++.+ .+|++++|+|+||||||||+++|+|++.. |++|.|
T Consensus 36 ~~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 36 EDLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TTCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred cccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 368889999999 37889999988 99999999999999999999999998752 678999
Q ss_pred EE---cCccc
Q 026740 135 IL---DGDNC 141 (234)
Q Consensus 135 ~~---~g~~v 141 (234)
.+ +|...
T Consensus 114 ~vi~~d~~~~ 123 (308)
T 1sq5_A 114 ELITTDGFLH 123 (308)
T ss_dssp EEEEGGGGBC
T ss_pred EEEecCCccC
Confidence 98 77654
No 88
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.14 E-value=5.4e-12 Score=111.79 Aligned_cols=61 Identities=21% Similarity=0.101 Sum_probs=52.9
Q ss_pred eeeceeee---cCC--cccc---------ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 78 KSTNILWH---KNS--VDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 78 ~~~~l~~~---~~~--~~~l---------~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
+++++++. |+. ..++ +++||.+++|++++|+||||||||||+++|+|+++ |.+|.|.++|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~ 211 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIEDV 211 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEESS
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEECCc
Confidence 56777777 642 2344 99999999999999999999999999999999998 89999999874
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.12 E-value=2.5e-11 Score=101.50 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=26.7
Q ss_pred ecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 85 ~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+.+++.+++++||++++|++++|+||||||||||+++|+|++.
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999999999763
No 90
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.12 E-value=1.3e-10 Score=95.06 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=35.8
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C-----CccEEEEcCcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-R-----GKLTYILDGDN 140 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p-----~~G~i~~~g~~ 140 (234)
-+++|++++|+||||||||||+++|+|++.. + ..+.+++++++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 5899999999999999999999999996652 2 34578887765
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.10 E-value=1.8e-10 Score=112.44 Aligned_cols=44 Identities=25% Similarity=0.233 Sum_probs=38.1
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHH
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~ 123 (234)
+.+++++++. ..|+|+||+|++|++++|+|+||||||||+++|+
T Consensus 628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3577777753 3699999999999999999999999999999864
No 92
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.08 E-value=5.3e-11 Score=105.30 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=45.7
Q ss_pred ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
..+||++++|++++|+||||||||||++.|+|++. |.+|+|.+.|.|+.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTF 196 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEeccccc
Confidence 57899999999999999999999999999999998 78999999998874
No 93
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.08 E-value=2.4e-10 Score=112.00 Aligned_cols=44 Identities=25% Similarity=0.210 Sum_probs=38.2
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHH
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~ 123 (234)
+.+++++++. ..|+++||+|++|++++|+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3677777753 3699999999999999999999999999999853
No 94
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.06 E-value=1.3e-10 Score=96.06 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=36.4
Q ss_pred ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC--CccEEEEcCcccc
Q 026740 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCR 142 (234)
Q Consensus 95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p--~~G~i~~~g~~v~ 142 (234)
-....++|++++|+||||||||||+++|+|+++ | ..|.|.+.+.+.+
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-p~~~~g~v~~ttr~~~ 57 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-LYDTQVSVSHTTRQPR 57 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC-TTTEEECCCEECSCCC
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-CCceEEEEEecCCCCC
Confidence 345689999999999999999999999999886 4 5788888877654
No 95
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.06 E-value=7.6e-11 Score=107.95 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=45.6
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+++||++.+|++++|+|+||||||||+++|+|++. +.+|+|.+.+.+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTF 332 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCccc
Confidence 468999999999999999999999999999999998 78999999876653
No 96
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.05 E-value=1.7e-10 Score=93.06 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=36.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc-----ccCCccEEEE
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-----HWRGKLTYIL 136 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll-----~~p~~G~i~~ 136 (234)
+++++|+++.|+ ..++++ |.+.+|..++|+|+||||||||++.|+|.. . |+.|++.+
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~-~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQL 64 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc-CCCcccee
Confidence 467899999997 467777 999999999999999999999999999976 4 66676543
No 97
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.03 E-value=2e-09 Score=84.76 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=63.3
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCChh--hHHHHHHHHHHHHHHHHhcC
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKAE--DRVENIRRIGEVAKLFADAG 174 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 174 (234)
.+|++++|+|+|||||||++++|++.+ |.+.++++++.... ....+...+ ....++..+..........+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN 80 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999965 67889988874210 001122222 22222222222221111223
Q ss_pred ceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026740 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217 (234)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~ 217 (234)
...+..........++.+++.. ..+..++++.|.+.+.+|.
T Consensus 81 ~~~vi~~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~ 121 (175)
T 1knq_A 81 KVSLIVCSALKKHYRDLLREGN--PNLSFIYLKGDFDVIESRL 121 (175)
T ss_dssp SEEEEECCCCSHHHHHHHHTTC--TTEEEEEEECCHHHHHHHH
T ss_pred CcEEEEeCchHHHHHHHHHhcC--CCEEEEEEECCHHHHHHHH
Confidence 2333333333444444444322 2334589999999998875
No 98
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.01 E-value=8.3e-11 Score=97.23 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=22.9
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHH-hhc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QAL 126 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~-gll 126 (234)
.+...++||++++|++++|+||||||||||+++|+ |++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45678999999999999999999999999999999 987
No 99
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.01 E-value=5.6e-11 Score=107.23 Aligned_cols=64 Identities=23% Similarity=0.198 Sum_probs=55.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.++++++.+.|+...+++++ +. .+|++++|+||||||||||+++|+|++. +.+|.|.+.++++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTVEDPIE 206 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEEESSCC
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEecccch
Confidence 56778888888777788888 54 8999999999999999999999999998 78899999888764
No 100
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.01 E-value=3.7e-11 Score=101.30 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=37.3
Q ss_pred ccceeece-eeec-CCccccccceeeecC---CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 75 TVAKSTNI-LWHK-NSVDKRDRQQLLQQK---GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 75 ~~~~~~~l-~~~~-~~~~~l~~vs~~i~~---Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++++++|+ ++.| ++..+++++||++.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999 9999 788899999999999 99999999999999999999999764
No 101
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.00 E-value=3.4e-11 Score=104.68 Aligned_cols=54 Identities=20% Similarity=0.041 Sum_probs=44.8
Q ss_pred cceeeceeeecCCccccccceee-----------------------ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLL-----------------------QQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~-----------------------i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G 132 (234)
.+++++|++.|+ ++++++++. +++|++++|+||||||||||+++|+|++. |..|
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~~G 119 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA-RWDH 119 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-TSTT
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-ccCC
Confidence 577788888884 455555553 89999999999999999999999999998 6544
No 102
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.99 E-value=2.7e-10 Score=100.70 Aligned_cols=46 Identities=17% Similarity=0.032 Sum_probs=41.5
Q ss_pred ccccceeeecC--CEEEEEEcCCCCcHHHHHHHHHhhcccCCc----cEEEEc
Q 026740 91 KRDRQQLLQQK--GCVIWITGLSGSGKSTLACALSQALHWRGK----LTYILD 137 (234)
Q Consensus 91 ~l~~vs~~i~~--Ge~~~liG~nGsGKSTLlr~l~gll~~p~~----G~i~~~ 137 (234)
+.+.|++++.+ |+.++|+|+||||||||+++|+|++. |.+ |.++++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-TTSAWEYGREFVF 208 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-CEEECCTTHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-CCcchhhHHHHHH
Confidence 35779999999 99999999999999999999999998 888 887763
No 103
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.99 E-value=2.9e-10 Score=90.67 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=37.4
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+++|++++|+||||||||||+++|++. ++.|.|.++|+++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLW 46 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchh
Confidence 4789999999999999999999999996 56799999998864
No 104
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.98 E-value=1e-11 Score=103.31 Aligned_cols=59 Identities=19% Similarity=0.055 Sum_probs=42.5
Q ss_pred ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
..++++|+...++. ++++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.++.
T Consensus 8 ~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-CCTTTC--------
T ss_pred eEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-cCCCeEEECCEEcc
Confidence 35777787766642 456666 8999999999999999999999998 89999999998874
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.97 E-value=5.4e-11 Score=95.23 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=60.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----ccccCCCChhhHHHHHHHHHHHHHH-HHh--cCce
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAEDRVENIRRIGEVAKL-FAD--AGVI 176 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~ 176 (234)
.++|+||||||||||+++|+|++. |.++|.+.... ....+++..++... ... ..... +.. ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 72 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTEG-KKK--IFSSKFFTSKKLVGS 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETTC-CEE--EEEETTCCCSSEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCcH-HHH--HHHhhcCCccccccc
Confidence 589999999999999999999885 22333322110 00011121111000 000 00000 000 0000
Q ss_pred EEEecCcccHHHHHHHHH-----hCCCCCceEEEEeC--ChhhhhhcchhhHHHHHHc
Q 026740 177 CIACLISPYRKDRDACRS-----MLPEGDFIEVFMDV--PLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~-----ll~~~~l~~~~ld~--P~~~l~~R~~~~l~~~~~~ 227 (234)
....++.+.++....++. ++..+.+ +++|| |++.++....+.+.+.+.+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~l--lilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKV--IIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCE--EEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCE--EEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 011122334455566775 6788888 89999 9999987777777777765
No 106
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=105.28 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=40.5
Q ss_pred cceeeceeeecCCccccccceeeecCCEE--EEEEcCCCCcHHHHHHHHHhhc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~--~~liG~nGsGKSTLlr~l~gll 126 (234)
.+++++ ++.|++.+ ++++||++++|++ ++|+|+||||||||+++|+|+.
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 456666 78898888 9999999999999 9999999999999999999974
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.96 E-value=2.2e-10 Score=99.27 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=39.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~ 143 (234)
+|++++|+||||||||||+++|+|++. |.+|+|.+.|.|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCCC
Confidence 799999999999999999999999998 899999999998753
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.94 E-value=3.8e-10 Score=92.17 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=41.9
Q ss_pred Ccccccccee-eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026740 88 SVDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (234)
Q Consensus 88 ~~~~l~~vs~-~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g 138 (234)
+...|+++.. .+++|++++|+||||||||||++.|++.+. +.+|.+.+.+
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~ 58 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVT 58 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEE
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEE
Confidence 3556888887 899999999999999999999999998876 5566666644
No 109
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.94 E-value=7.1e-09 Score=96.46 Aligned_cols=133 Identities=49% Similarity=0.840 Sum_probs=89.1
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEEE
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA 179 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (234)
+.|.+++++|++||||||+++.|+..+...+.....++++.++.....+.++...++..+++.+..+...+...+...+.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~ 449 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVIC 449 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 56889999999999999999999986642223346778877765444444566666666555544444444445555555
Q ss_pred ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026740 180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232 (234)
Q Consensus 180 ~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~ 232 (234)
......+..++.+++++...++..++++.|.+.+.+|..+++|+..+.+.+..
T Consensus 450 d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~ 502 (546)
T 2gks_A 450 ALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKG 502 (546)
T ss_dssp ECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------C
T ss_pred EcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHH
Confidence 55555566667777777665655689999999999999888887655555443
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.93 E-value=2.8e-09 Score=104.26 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=35.1
Q ss_pred cCcccHHHHHHHHHhCCCCC-ceEEEEeCChhhhhhcchhhHHHHHH
Q 026740 181 LISPYRKDRDACRSMLPEGD-FIEVFMDVPLQVCEARDPKGLYKLAR 226 (234)
Q Consensus 181 ~~~~~~~~~~~~~~ll~~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~ 226 (234)
++.+.+++..++++++..+. -.-+++|||+..|+..+.+.+++.++
T Consensus 806 LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~ 852 (916)
T 3pih_A 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLH 852 (916)
T ss_dssp CCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 45566777788899887652 12289999999999888888887765
No 111
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.91 E-value=7.3e-10 Score=89.22 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=32.5
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
|+++.+|++++|+||||||||||+++|+|++ | .+.+.+.++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~--~---~~~~~~~~~~ 42 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL--A---EIKISISHTT 42 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS--S---SEEECCCEEC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC--C---CeEEeceecc
Confidence 5778899999999999999999999999985 3 3667766554
No 112
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.89 E-value=4.7e-10 Score=96.87 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=22.5
Q ss_pred eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh-cccCCccEEEEcCccc
Q 026740 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-LHWRGKLTYILDGDNC 141 (234)
Q Consensus 80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl-l~~p~~G~i~~~g~~v 141 (234)
+|++++|+.+.++++++|+| +|+|+||||||||+++|.|. +. |.+| +.++|.++
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERV-ISGAAEKI 56 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC------------------
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-CCCC-cccCCccc
Confidence 47889999999999999998 99999999999999999997 55 7777 66655543
No 113
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.87 E-value=7.8e-10 Score=90.02 Aligned_cols=44 Identities=32% Similarity=0.320 Sum_probs=37.9
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCcccc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCR 142 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~ 142 (234)
.++|++++|+||||||||||+++|+|++.+ +..|.|.++|..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 579999999999999999999999999872 24788998887653
No 114
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.86 E-value=1.9e-09 Score=94.26 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=41.2
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~ 143 (234)
..++|++++|+||||||||||+++|+|++. |.+|+|.+.|.|+..
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFR 169 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccc
Confidence 457899999999999999999999999998 899999999988753
No 115
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.85 E-value=2.4e-09 Score=93.11 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=29.0
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
++++++.+| +++|+|+||||||||+++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 578889999 99999999999999999999654
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.84 E-value=2.9e-08 Score=79.09 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=33.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~ 143 (234)
|++++|+||||||||||+++|++ +.+|.++++|+++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~----~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA----QLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH----HSSSEEEEEHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc----ccCCeEEEcccchhh
Confidence 78999999999999999999987 356889999988753
No 117
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.83 E-value=8.3e-10 Score=94.49 Aligned_cols=47 Identities=26% Similarity=0.155 Sum_probs=41.6
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEE
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYIL 136 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~ 136 (234)
..+|+++++.+++|++++|+|+||||||||++.|++.+. +.+| .+.+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~ 69 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGL 69 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-HTSCCCEEE
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCeEEE
Confidence 457999999999999999999999999999999999987 6666 5644
No 118
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.83 E-value=1.3e-09 Score=92.87 Aligned_cols=38 Identities=29% Similarity=0.258 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.++|+||||||||||+++|+|+.. |++|+|.++|+++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~ 41 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIP 41 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccC
Confidence 589999999999999999999988 89999999998763
No 119
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.82 E-value=4.7e-09 Score=102.96 Aligned_cols=35 Identities=23% Similarity=0.070 Sum_probs=32.8
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHH
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l 122 (234)
+..+++|++|++.+|++++|+||||||||||+|++
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 34678899999999999999999999999999999
No 120
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.82 E-value=7e-10 Score=102.44 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=46.8
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
..+++++++.+++|+.++|+||||||||||+++|+|+++ |+.|.|.++|.+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCcc
Confidence 456788999999999999999999999999999999998 899999998765
No 121
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.82 E-value=2.3e-09 Score=91.27 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=47.3
Q ss_pred eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+.++...+++++++++++| ++|+||||||||||+|+|++.+. + +.|.++|.++.
T Consensus 28 ~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 28 APVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-L--NFISVKGPELL 81 (274)
T ss_dssp HHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-C--EEEEEETTTTC
T ss_pred HHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-C--CEEEEEcHHHH
Confidence 4455667899999999999 99999999999999999999876 4 78999998875
No 122
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.81 E-value=4.2e-09 Score=103.09 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=35.7
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
+..+++|+||++++|++++|+||||||||||+|+++++.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 467889999999999999999999999999999998653
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.80 E-value=1.4e-08 Score=89.71 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=45.4
Q ss_pred eceeeec--CCcccccccee-------eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCccc
Q 026740 80 TNILWHK--NSVDKRDRQQL-------LQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNC 141 (234)
Q Consensus 80 ~~l~~~~--~~~~~l~~vs~-------~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~~v 141 (234)
.++++++ .....++++.+ ...+|++++|+||||||||||+++|+|++. +. +|.|...++++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPI 162 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcH
Confidence 3444444 23445667665 678899999999999999999999999998 55 57776555444
No 124
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.79 E-value=7.8e-09 Score=95.64 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=73.2
Q ss_pred cceeeceeeecCCccccccc-eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE--EEEcCccccccccccCCCC
Q 026740 76 VAKSTNILWHKNSVDKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT--YILDGDNCRHGLNRDLSFK 152 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~--i~~~g~~v~~~~~~~~~~~ 152 (234)
.+++++++..+++ ++.+ +..+.+|++++|+|+||||||||+++++|+.. +. |. +++.+++..
T Consensus 257 ~~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-~~-G~~vi~~~~ee~~---------- 321 (525)
T 1tf7_A 257 RSSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC-AN-KERAILFAYEESR---------- 321 (525)
T ss_dssp CCCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-TT-TCCEEEEESSSCH----------
T ss_pred ccccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-hC-CCCEEEEEEeCCH----------
Confidence 3455666655533 2222 45899999999999999999999999999887 54 54 566554321
Q ss_pred hhhHHHHHHHHH-HHHHHHHhcCceEEEe-----cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc-----chhhH
Q 026740 153 AEDRVENIRRIG-EVAKLFADAGVICIAC-----LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR-----DPKGL 221 (234)
Q Consensus 153 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R-----~~~~l 221 (234)
.+.......+. .... +...+...+.. ++....+....++.+...+.+ +++| |++.++.. ..+.+
T Consensus 322 -~~l~~~~~~~g~~~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l--lilD-p~~~Ld~~~~~~~~~~~i 396 (525)
T 1tf7_A 322 -AQLLRNAYSWGMDFEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPAR--IAID-SLSALARGVSNNAFRQFV 396 (525)
T ss_dssp -HHHHHHHHTTSCCHHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEE-CHHHHTSSSCHHHHHHHH
T ss_pred -HHHHHHHHHcCCCHHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCE--EEEc-ChHHHHhhCChHHHHHHH
Confidence 11111100000 0000 11122222211 122333344445555666777 8999 99999876 45554
Q ss_pred HHHH
Q 026740 222 YKLA 225 (234)
Q Consensus 222 ~~~~ 225 (234)
++.+
T Consensus 397 ~~ll 400 (525)
T 1tf7_A 397 IGVT 400 (525)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 125
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.78 E-value=1.4e-09 Score=93.74 Aligned_cols=46 Identities=28% Similarity=0.270 Sum_probs=32.5
Q ss_pred eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE---cCccccc
Q 026740 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCRH 143 (234)
Q Consensus 97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~---~g~~v~~ 143 (234)
|++.+|++++|+||||||||||+++|+|+.. |.+|+|.+ +|++++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~ 212 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTT 212 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCcee
Confidence 5677899999999999999999999999988 89999999 8887753
No 126
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.78 E-value=3.5e-09 Score=85.72 Aligned_cols=28 Identities=36% Similarity=0.335 Sum_probs=23.8
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999874
No 127
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.77 E-value=3.7e-09 Score=101.79 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=37.2
Q ss_pred CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE
Q 026740 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY 134 (234)
Q Consensus 87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i 134 (234)
++..+++|+||+ |++++|+||||||||||+|+|+|+...+..|.+
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 345678899999 999999999999999999999998642455643
No 128
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.75 E-value=3.6e-09 Score=95.36 Aligned_cols=46 Identities=22% Similarity=0.110 Sum_probs=39.1
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+.++|++++|++..+++++||+| +|+|+||||||||+++|+|...
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 578899999999999999999998 9999999999999999999875
No 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.75 E-value=8.8e-09 Score=90.71 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=42.5
Q ss_pred cccccc-eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCc----cE-EEEcCccc
Q 026740 90 DKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGK----LT-YILDGDNC 141 (234)
Q Consensus 90 ~~l~~v-s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~----G~-i~~~g~~v 141 (234)
..|+++ ++.+++|+++.|+||||||||||++.|++... .|++ |. +++++++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 456665 68999999999999999999999999999872 1444 57 89988653
No 130
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.74 E-value=1.5e-08 Score=80.16 Aligned_cols=38 Identities=29% Similarity=0.286 Sum_probs=33.7
Q ss_pred ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026740 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (234)
Q Consensus 93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G 132 (234)
+++++++.+| +++|+||||||||||+++|.+++. +..|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~-~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG-GLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT-CCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc-CCcc
Confidence 6889999999 999999999999999999999886 4433
No 131
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.73 E-value=3e-09 Score=94.52 Aligned_cols=48 Identities=27% Similarity=0.261 Sum_probs=40.7
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCccc
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNC 141 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~~v 141 (234)
++++++ +++|++++|+||||||||||+++|+|++. |. +|.|.+.++++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSC
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccH
Confidence 455554 78999999999999999999999999998 66 79997766654
No 132
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.73 E-value=1.6e-08 Score=83.29 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=36.2
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhh--cccC-----CccEEEEcCcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQA--LHWR-----GKLTYILDGDN 140 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gl--l~~p-----~~G~i~~~g~~ 140 (234)
-+++|++++|+||||||||||++.|++. +. + ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP-IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC-GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc-hhcCCCCCeEEEEECCC
Confidence 4889999999999999999999999994 43 3 56889998865
No 133
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.72 E-value=6e-09 Score=103.21 Aligned_cols=52 Identities=17% Similarity=0.049 Sum_probs=42.5
Q ss_pred ccceeec-----eeeec-CCccccccceeeecC-------CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 75 TVAKSTN-----ILWHK-NSVDKRDRQQLLQQK-------GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 75 ~~~~~~~-----l~~~~-~~~~~l~~vs~~i~~-------Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++++++ +++.| ++..+++|++|++.+ |++++|+||||||||||+|++ |++.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4678888 88888 677899999999987 999999999999999999999 8875
No 134
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.72 E-value=8.5e-09 Score=82.36 Aligned_cols=26 Identities=42% Similarity=0.410 Sum_probs=24.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999886
No 135
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.71 E-value=2.6e-09 Score=89.26 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=51.5
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+++++.+.|+...+++++++++++| +.|+||||||||||+++|++.+. .|.+.+++.++.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~ 86 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 86 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHH
Confidence 44566666777778899999999999 89999999999999999999764 588999887764
No 136
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.70 E-value=3e-09 Score=90.26 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=52.0
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+++++.+.|+...+++++++++++| +.|+||||||||||+++|++.+. .|.+.+++.++.
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~ 110 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 110 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHH
Confidence 44566777777778899999999999 89999999999999999999764 588999887764
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.70 E-value=1.6e-08 Score=78.36 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEcCcccc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCR 142 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~g~~v~ 142 (234)
+|+.++|+||||||||||+++|++.+. + +| .+++++.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCCcEEEEcHHHhh
Confidence 899999999999999999999999887 4 47 8888887664
No 138
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.70 E-value=1.1e-09 Score=103.13 Aligned_cols=62 Identities=21% Similarity=0.026 Sum_probs=35.7
Q ss_pred cceeeceeeecCCc--cccccc----------eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-CccEEEEcCccc
Q 026740 76 VAKSTNILWHKNSV--DKRDRQ----------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNC 141 (234)
Q Consensus 76 ~~~~~~l~~~~~~~--~~l~~v----------s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-~~G~i~~~g~~v 141 (234)
.+.++|+++.|++. ++++.+ +++++. ++|+|+||||||||+++|+|++. | ++|.|.++|.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-P~~sG~vt~~g~~i 84 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-PRGSGIVTRCPLVL 84 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-CCCCCeEEEcCEEE
Confidence 35566777777542 233322 355554 99999999999999999999987 6 799999999885
No 139
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.68 E-value=3.2e-09 Score=85.72 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
|++++|+||||||||||+++|+|++. ++| |.++|.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEec
Confidence 78999999999999999999999886 568 88888665
No 140
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.68 E-value=5e-10 Score=97.82 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=52.5
Q ss_pred cceeeceeeecCCccccccceeeecCC-------EEEEEEcCCCCcHHHHHHHHHhhc----ccCCccEEEEcCccc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKG-------CVIWITGLSGSGKSTLACALSQAL----HWRGKLTYILDGDNC 141 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~G-------e~~~liG~nGsGKSTLlr~l~gll----~~p~~G~i~~~g~~v 141 (234)
.++.++++..|+...+++++++.+..| +.++|+||||+|||||+++|++.+ . +.+|.+..++.++
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~-~~sg~~~~~~~~l 93 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH-VTSGPVLVKQGDM 93 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE-EEETTTCCSHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE-EEechHhcCHHHH
Confidence 456677888888888999999999876 899999999999999999999988 4 4556555544443
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.67 E-value=7.8e-08 Score=83.22 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=41.6
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+++...+|++++|+|+|||||||+++.|++.+. +.+|.+.+.+.|..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccc
Confidence 4567778999999999999999999999999997 67788988776654
No 142
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.67 E-value=2.8e-08 Score=80.51 Aligned_cols=49 Identities=24% Similarity=0.180 Sum_probs=39.3
Q ss_pred cccccccee-eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 89 VDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 89 ~~~l~~vs~-~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
.+.|+++.. .+++|++++|+|+||||||||++.|++ . ++.+.++++.+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~ 55 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEG 55 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSC
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCC
Confidence 345666654 689999999999999999999999999 3 556777777554
No 143
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=1e-08 Score=82.71 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=25.7
Q ss_pred CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
...+++|+||++.+|++++|+|++||||||+++.|++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3467999999999999999999999999999999998764
No 144
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.66 E-value=1.3e-08 Score=81.87 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=28.9
Q ss_pred eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026740 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (234)
Q Consensus 97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G 132 (234)
+++.+|++++|+|||||||||++++|++++. |..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~-~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS-TSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT-CCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC-CCeE
Confidence 4678999999999999999999999999885 5444
No 145
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.64 E-value=9.2e-09 Score=88.77 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=34.3
Q ss_pred eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE---cCcccc
Q 026740 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR 142 (234)
Q Consensus 97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~---~g~~v~ 142 (234)
+++.+|++++|+||||||||||+++|+ ++. |.+|+|.+ +|++++
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTT 206 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCce
Confidence 456789999999999999999999999 887 89999999 887765
No 146
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.63 E-value=5.8e-09 Score=82.90 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCcccc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCR 142 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~ 142 (234)
++++|+|+||||||||+++|+|++. |. .|.|.++|.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccc
Confidence 5799999999999999999999998 66 799999998854
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=3.5e-09 Score=91.72 Aligned_cols=45 Identities=24% Similarity=0.218 Sum_probs=27.4
Q ss_pred eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE---cCcccc
Q 026740 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR 142 (234)
Q Consensus 97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~---~g~~v~ 142 (234)
+++.+|++++|+|+||||||||+++|+|+.. +.+|.|.+ +|+.++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccc
Confidence 6788999999999999999999999999887 88999998 776654
No 148
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.61 E-value=2.8e-09 Score=92.91 Aligned_cols=57 Identities=16% Similarity=0.064 Sum_probs=45.5
Q ss_pred eceeeecCCccccccceeeecCCE------EEEEEcCCCCcHHHHHHHHHhhccc-CCccEEEE
Q 026740 80 TNILWHKNSVDKRDRQQLLQQKGC------VIWITGLSGSGKSTLACALSQALHW-RGKLTYIL 136 (234)
Q Consensus 80 ~~l~~~~~~~~~l~~vs~~i~~Ge------~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i~~ 136 (234)
+.+++.|++...+.+++..+.+++ +++|+||||||||||+++|++++.. +++|.+.+
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 345667888888888888887776 9999999999999999999999862 34555443
No 149
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.61 E-value=2e-08 Score=81.29 Aligned_cols=29 Identities=48% Similarity=0.516 Sum_probs=26.1
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++|++++|+||||||||||+++|+|++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999999876
No 150
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.60 E-value=4.9e-09 Score=88.06 Aligned_cols=42 Identities=26% Similarity=0.157 Sum_probs=37.1
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHH---hhcccCCccEEE--------EcCcccc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALS---QALHWRGKLTYI--------LDGDNCR 142 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~---gll~~p~~G~i~--------~~g~~v~ 142 (234)
.+|++++|+|||||||||++++|+ |+.. +++|.++ .+|.++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-LDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-EEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-CCCCceehHhHHHHHHcCCCcc
Confidence 789999999999999999999999 8776 7889888 7776653
No 151
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.60 E-value=3.6e-07 Score=76.45 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=65.9
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc------ccCCCChhhHHHH-H-HHHHHHHHH
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN------RDLSFKAEDRVEN-I-RRIGEVAKL 169 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~------~~~~~~~~~~~~~-~-~~~~~~~~~ 169 (234)
..++|.+++|+|+|||||||+++.|+..+. .+.+.++++.++.... ...+....+..+. . ..+..+...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTK 104 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence 577899999999999999999999999764 2568889988764321 1223333332221 1 111122222
Q ss_pred HHhcC-ceEEEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcchhh
Q 026740 170 FADAG-VICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDPKG 220 (234)
Q Consensus 170 ~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~~~ 220 (234)
+...+ ...+......... +......+...+ +..++++.|.+.+.+|..+.
T Consensus 105 ~~~~g~~vVid~~~~~~~~-~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 105 LSSLGYNLLIEGTLRTVDV-PKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp HHHTTCCEEEECCTTSSHH-HHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred HHhcCCCEEEeCCCCCHHH-HHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 22222 2222222222222 222223333233 33357789999998886543
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.60 E-value=1.1e-08 Score=88.04 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=51.3
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+..+++++.|+... ++++|+ +|++++++|+||+||||+++.|++++. +..|.+.+.+.|..
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcc
Confidence 44567777786543 788888 999999999999999999999999997 67889998877764
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.57 E-value=2.6e-08 Score=80.54 Aligned_cols=44 Identities=34% Similarity=0.301 Sum_probs=37.5
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
...+|++++|+|+|||||||++++|++++. +.+|.+.+.+.|..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVFHMDDH 61 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEEGGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEEeccCcc
Confidence 467899999999999999999999999987 66788877665543
No 154
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.54 E-value=3.3e-07 Score=73.71 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=60.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCCChhhHHHHHHHHHHHHHHHHhcCce
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFADAGVI 176 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (234)
+.+++|+|++||||||+++.|++.+ |...++++++.... .....+.......++.. +...+ ..+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~---l~~~~-~~~~~ 88 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAA---IGERL-ASREP 88 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHH---HHHHH-TSSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHH---HHHHH-hcCCC
Confidence 5689999999999999999999876 34567777664210 00111222222232322 22222 22222
Q ss_pred EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
.+..........++.+..+... ....++++.|.+.+.+|..
T Consensus 89 vivd~~~~~~~~~~~l~~~~~~-~~~vi~l~~~~e~~~~Rl~ 129 (202)
T 3t61_A 89 VVVSCSALKRSYRDKLRESAPG-GLAFVFLHGSESVLAERMH 129 (202)
T ss_dssp CEEECCCCSHHHHHHHHHTSTT-CCEEEEEECCHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHhcCC-CeEEEEEeCCHHHHHHHHH
Confidence 3333333345556666665532 2345889999999987753
No 155
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.53 E-value=3.5e-08 Score=78.42 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=28.7
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~ 135 (234)
.+|++++|+||||||||||+++|++.++....|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 368999999999999999999999987511334443
No 156
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.53 E-value=1.2e-07 Score=85.03 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=33.8
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHH--HhhcccCC-----ccEEEEcCcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACAL--SQALHWRG-----KLTYILDGDN 140 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l--~gll~~p~-----~G~i~~~g~~ 140 (234)
-+++|+++.|+||||||||||++.| +++++ +. .+.+++++++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-cccCCCCCcEEEEeCCC
Confidence 4899999999999999999999955 45444 32 3488998876
No 157
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.52 E-value=6.9e-07 Score=70.04 Aligned_cols=114 Identities=19% Similarity=0.104 Sum_probs=58.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc-------CCC-------ChhhHHHHHHHHHHHH
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-------LSF-------KAEDRVENIRRIGEVA 167 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~ 167 (234)
|.+++|+|++||||||+++.|+..+.. +.+.++.+++....... +.+ .....+.....+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence 568999999999999999999987641 34444443321110000 000 0111112122111112
Q ss_pred HHHHhcCceEEEecCcc-cHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026740 168 KLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~ 218 (234)
..+...+...+...... ....++..++.+...++..++++.|.+.+.+|..
T Consensus 80 ~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~ 131 (178)
T 1qhx_A 80 VAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRET 131 (178)
T ss_dssp HHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHH
Confidence 22223333333333221 1222344455555556656778999999988864
No 158
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.50 E-value=5.7e-08 Score=94.03 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=36.3
Q ss_pred CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++..+++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 456789999999 9999999999999999999999999753
No 159
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.50 E-value=5.9e-08 Score=84.47 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=44.1
Q ss_pred ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+++|++.+|++++|+|+||+||||++..|++.+. +.+|.+.+.+.|+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCc
Confidence 68999999999999999999999999999999998 67888988776654
No 160
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.48 E-value=9.2e-09 Score=85.69 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH---hhcccCCccEEEEcCcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALS---QALHWRGKLTYILDGDN 140 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~---gll~~p~~G~i~~~g~~ 140 (234)
++++++|+||||||||||+++|+ |+.. ++.|.+.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-LSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-EEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-ecHHHHHHHHHh
Confidence 47999999999999999999999 9876 788888776543
No 161
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.48 E-value=4.7e-08 Score=80.71 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=36.7
Q ss_pred ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
-+.+.++|++++|.|+|||||||++++|+++ +|.|.+.+++..
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPVE 55 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCHH
Confidence 3456789999999999999999999999996 478888887753
No 162
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.47 E-value=4e-08 Score=85.27 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=36.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhc--------ccCCccEEEEcCccccc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQAL--------HWRGKLTYILDGDNCRH 143 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll--------~~p~~G~i~~~g~~v~~ 143 (234)
=++++|+|+||||||||+++|+|+. . ++.|+|.+||.++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-NEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-SSCCSCCEEEEEECT
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-ecCcccCccHHHHhC
Confidence 3689999999999999999999986 4 789999999988753
No 163
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.47 E-value=3.9e-08 Score=77.78 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=31.6
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G 132 (234)
+|.+.+|+.++|+||||||||||+++|++.+. +..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcC
Confidence 56788899999999999999999999999886 4444
No 164
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.46 E-value=1.5e-08 Score=88.81 Aligned_cols=67 Identities=22% Similarity=0.123 Sum_probs=54.6
Q ss_pred cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
..+++.++..+.|+...+++++++.+.+|.+++|+|++|+|||||++.|++.+. +..+.+.+-+.+.
T Consensus 28 i~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-~~~~~v~v~~~d~ 94 (341)
T 2p67_A 28 MTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-REGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred hhHhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeecC
Confidence 345666777777777788999999999999999999999999999999999886 5566665544443
No 165
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.45 E-value=2.3e-07 Score=82.00 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=32.6
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
...++++++++.+| +++|+|||||||||++++|.+
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 45678999999999 999999999999999999998
No 166
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.44 E-value=8.8e-07 Score=74.97 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=27.7
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+++|++++|+||||||||||++.+++.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999999999765
No 167
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.44 E-value=2e-07 Score=75.70 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=26.8
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45566899999999999999999999999764
No 168
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.42 E-value=1.7e-07 Score=84.41 Aligned_cols=49 Identities=24% Similarity=0.165 Sum_probs=37.9
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~ 131 (234)
-++++|+ +.|++.. .+++.+|++++|+||||||||||+++|++++. +.+
T Consensus 6 ~l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~-~~~ 54 (430)
T 1w1w_A 6 GLELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG-VRS 54 (430)
T ss_dssp EEEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT-C--
T ss_pred EEEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc-ccc
Confidence 4567777 5776432 35677899999999999999999999999886 543
No 169
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.41 E-value=1.1e-07 Score=83.83 Aligned_cols=49 Identities=22% Similarity=0.041 Sum_probs=34.0
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc-Ccc
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDN 140 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~-g~~ 140 (234)
-++++++. .+|++++|+||||||||||+++|+|++..+.+|.|.++ |..
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 35666664 47999999999999999999999997642678999876 644
No 170
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.39 E-value=1e-07 Score=84.78 Aligned_cols=44 Identities=25% Similarity=0.057 Sum_probs=38.5
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~ 136 (234)
..+++++++.+++|++++|+||||||||||+++|++.+ +|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~----~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc----CCcEEE
Confidence 36789999999999999999999999999999999964 356554
No 171
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.35 E-value=2.3e-07 Score=75.36 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=26.4
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999999875
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.30 E-value=1.1e-06 Score=72.09 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=36.0
Q ss_pred cccccc-eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 90 DKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 90 ~~l~~v-s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
..|+++ .--+++|+++.|.|+||||||||+..++......+.+.++++.+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 345555 55689999999999999999999766544333255566677654
No 173
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.28 E-value=3.9e-07 Score=80.54 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=31.2
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
..++++++++.+| +++|+||||||||||+.+|+..+
T Consensus 12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCccceEEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 4466788999999 78899999999999999999654
No 174
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.28 E-value=1.5e-07 Score=88.46 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=53.3
Q ss_pred eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc-cEEEEcCcccc
Q 026740 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNCR 142 (234)
Q Consensus 80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~-G~i~~~g~~v~ 142 (234)
++++..||...+++++++.+..|+.+.|+||||||||||+++|++++. +.. |.+.+.+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPED 100 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTC
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCccc
Confidence 455566788889999999999999999999999999999999999998 454 88888776654
No 175
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.28 E-value=5.3e-07 Score=71.84 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccC-----------CccEEEEcCccc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWR-----------GKLTYILDGDNC 141 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p-----------~~G~i~~~g~~v 141 (234)
-.++|+|+||||||||++.++|... + .+|.|.++|+++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEE
Confidence 3689999999999999999999765 3 468899998764
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.27 E-value=2e-07 Score=83.94 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=39.6
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc----------cCCccEEEEcC
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----------WRGKLTYILDG 138 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~----------~p~~G~i~~~g 138 (234)
.++++|+++.|+.++|+|+||||||||+++|++..+ .|..|.+.+++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 478999999999999999999999999999999721 15567777664
No 177
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.25 E-value=9.7e-08 Score=88.72 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=49.2
Q ss_pred eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
.+++...|+...++.++++++ +|++++|+||||+|||||+++|++.+. +..|.+.+.+.
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~~ 144 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-RKFVRISLGGV 144 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-CEEEEECCCC-
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 455666676677888999988 899999999999999999999999987 67787777663
No 178
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.25 E-value=4.4e-07 Score=70.84 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
.|++++|+|+|||||||++++|++.+. + .+++++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-~----~~id~d~~ 38 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-M----EFYDSDQE 38 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT-C----EEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-C----CEEeccHH
Confidence 467899999999999999999999875 2 56776554
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=6.6e-07 Score=77.78 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-hcccCCccEEEEcCcccc
Q 026740 104 VIWITGLSGSGKSTLACALSQ-ALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~g-ll~~p~~G~i~~~g~~v~ 142 (234)
.+.|.||||+||||++++|++ ++. +..|.+.++|.+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFV 76 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC-TTCCC---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeec
Confidence 389999999999999999999 565 88899999887653
No 180
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.20 E-value=6.2e-07 Score=80.87 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=47.9
Q ss_pred eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
++++..|+... ++++|+ +|++++++|+|||||||++..|++.+. +..+.+.+.+.|..
T Consensus 80 ~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 80 EALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCSS
T ss_pred HHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeecccc
Confidence 45666776544 678888 899999999999999999999999998 77888888766654
No 181
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.20 E-value=1e-06 Score=78.73 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=35.8
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHh------------hcccCCccEEEEcCc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQ------------ALHWRGKLTYILDGD 139 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~g------------ll~~p~~G~i~~~g~ 139 (234)
++.+|..++|+|+||+|||||+++|+| .+. |..|.+.+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~-p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID-PEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC-TTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec-ceeeeeeeCCc
Confidence 467899999999999999999999999 344 78899998873
No 182
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.17 E-value=1.6e-05 Score=66.59 Aligned_cols=113 Identities=20% Similarity=0.239 Sum_probs=58.6
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHH--HHHHHHHHhcCceE
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI--GEVAKLFADAGVIC 177 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 177 (234)
.++.+++|+|++||||||+++.|+..+...+.-.+.++++.+..... ++.... ....+.. ..+...+.. ...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~---~~~~~~-e~~~~~~~~~~i~~~l~~--~~v 75 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP---VWKEKY-EEFIKKSTYRLIDSALKN--YWV 75 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS---SCCGGG-HHHHHHHHHHHHHHHHTT--SEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh---hhhHHH-HHHHHHHHHHHHHHHhhC--CEE
Confidence 35678999999999999999999986542222233457777653221 122211 1111111 112222222 222
Q ss_pred EEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcch
Q 026740 178 IACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDP 218 (234)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~ 218 (234)
+..........++.+..+....+ ...++++.|.+.+.+|..
T Consensus 76 IiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~ 118 (260)
T 3a4m_A 76 IVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNI 118 (260)
T ss_dssp EECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHH
T ss_pred EEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHH
Confidence 33322223333444443332222 234788999999988753
No 183
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.15 E-value=5.9e-07 Score=82.62 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=49.7
Q ss_pred ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+++++...+....++.++++++++| +.|+||||+|||||+++|++... .+.+.+++.++.
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~ 101 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 101 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGT
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHH
Confidence 34455555566667899999999999 89999999999999999999764 578888887764
No 184
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.15 E-value=1.8e-06 Score=71.39 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=31.6
Q ss_pred cccceeeec---CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026740 92 RDRQQLLQQ---KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (234)
Q Consensus 92 l~~vs~~i~---~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~ 137 (234)
+.++|+.+. +|.+++|.|++||||||+++.|+..+. + .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCceee
Confidence 566677665 999999999999999999999999887 5 5555443
No 185
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.14 E-value=1.3e-06 Score=70.49 Aligned_cols=33 Identities=36% Similarity=0.395 Sum_probs=28.9
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
++--++.+|++++|+|+|||||||+++.|++.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344568899999999999999999999999976
No 186
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.14 E-value=2.4e-05 Score=66.72 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=33.9
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
....|.++.|+|||||||||+++.|+..+. .+.+.++++.++
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R 70 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFK 70 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhH
Confidence 345688999999999999999999987553 366788887665
No 187
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.14 E-value=1.1e-05 Score=62.84 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+++|.|++||||||+++.|+.. . .|...++.+.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~-~---~~~~~i~~d~~r 38 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK-N---PGFYNINRDDYR 38 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-S---TTEEEECHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh-c---CCcEEecHHHHH
Confidence 57899999999999999999872 1 245566655443
No 188
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.12 E-value=6.5e-07 Score=77.05 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=47.1
Q ss_pred eceeeecCCcccccc-ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 80 TNILWHKNSVDKRDR-QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 80 ~~l~~~~~~~~~l~~-vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+++...|++.. ++ ++++.+ |++++++|++|+||||++..|++.+. +..+.+.+.+.|..
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECCCS
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCCC
Confidence 45566676543 56 888877 99999999999999999999999987 66778877666654
No 189
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.12 E-value=6e-07 Score=73.15 Aligned_cols=35 Identities=37% Similarity=0.377 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc--cCCccEEEE
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH--WRGKLTYIL 136 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~--~p~~G~i~~ 136 (234)
+.+++|+|+|||||||+++.|++.+. .++.|.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 56899999999999999999998762 145566554
No 190
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.10 E-value=1.9e-06 Score=68.81 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccc----C------CccEEEEcCccc
Q 026740 104 VIWITGLSGSGKSTLACALSQALHW----R------GKLTYILDGDNC 141 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~----p------~~G~i~~~g~~v 141 (234)
.++|+|+||||||||++.++|.... | ..|.+.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 5899999999999999999997421 2 257888888754
No 191
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.09 E-value=1.3e-06 Score=75.11 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=33.8
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEEcCccc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDNC 141 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~~g~~v 141 (234)
.+|++++|+|+|||||||+++.|++.+. +.+| .+.+-+.|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-LEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCEEEEEecCc
Confidence 5799999999999999999999999987 5566 666554444
No 192
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.08 E-value=1.3e-06 Score=80.47 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=32.6
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
...++++++++.+| +.+|+|+||||||||+.+|..+
T Consensus 48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34678899999999 9999999999999999999776
No 193
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.06 E-value=2e-06 Score=76.53 Aligned_cols=52 Identities=13% Similarity=0.023 Sum_probs=46.1
Q ss_pred cceeeceeeecCC-ccccc--------------cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 76 VAKSTNILWHKNS-VDKRD--------------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 76 ~~~~~~l~~~~~~-~~~l~--------------~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
-+.++|+++.|.. +..++ |+++.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4678899999964 56788 8999999999999999999999999999999764
No 194
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.05 E-value=4.4e-06 Score=64.46 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=25.7
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 345555554 89999999999999999998655
No 195
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.02 E-value=2.5e-05 Score=70.01 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=61.3
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV 175 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (234)
.+.-.++.+++|+|++||||||+++.|+..+ |-+.++.+++.. ...... .+...+. .+.
T Consensus 252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~------------~~~~~~---~~~~~l~-~g~ 310 (416)
T 3zvl_A 252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLGS------------WQRCVS---SCQAALR-QGK 310 (416)
T ss_dssp CSCCSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSCS------------HHHHHH---HHHHHHH-TTC
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHHH------------HHHHHH---HHHHHHh-cCC
Confidence 3445678999999999999999999997643 445677665531 111111 1222222 233
Q ss_pred eEEEecCcccHHHHHHHHHhCCC--CCceEEEEeCChhhhhhcchhh
Q 026740 176 ICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG 220 (234)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~ll~~--~~l~~~~ld~P~~~l~~R~~~~ 220 (234)
..++.........++...+++.. ..+..++++.|.+.|.+|..+.
T Consensus 311 ~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R 357 (416)
T 3zvl_A 311 RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR 357 (416)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence 33343333344444444444432 2344578899999998887544
No 196
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.01 E-value=1.2e-05 Score=63.43 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=29.3
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.+|.+++|+|++||||||+++.|+..+. ...++.+.+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-----~~~i~~D~~~ 40 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR-----LPLLSKDAFK 40 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT-----CCEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC-----CeEecHHHHH
Confidence 5688999999999999999999987553 2245555543
No 197
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.99 E-value=3.5e-06 Score=66.81 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=26.8
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
++|++..+|..++|+|++||||||+++.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999986
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.98 E-value=3.5e-06 Score=74.00 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=34.2
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+++.+++|+|++|||||||++.|.|.+. +.+|.|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEEEeecC
Confidence 4588999999999999999999999887 6677776665544
No 199
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.94 E-value=4.1e-06 Score=67.50 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=26.5
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
...+|.+++|+|||||||||+++.|+..+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999998663
No 200
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=1.4e-06 Score=75.77 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=41.1
Q ss_pred ceeeecCCccccccceeeecCCEE--EEEEcCCCCcHHHHHHHHHhhcc
Q 026740 81 NILWHKNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 81 ~l~~~~~~~~~l~~vs~~i~~Ge~--~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++..+|...+++.++..++.|++ +.+.||+|+||||+++++++.+.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 444556777888999999999998 99999999999999999999876
No 201
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.89 E-value=6.9e-06 Score=70.34 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=26.9
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
-.++.+++|.|+||||||||++.|.+++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45789999999999999999999999987
No 202
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.88 E-value=3.9e-05 Score=59.99 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=19.5
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3577899999999999999999987654
No 203
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.85 E-value=4.7e-06 Score=73.14 Aligned_cols=42 Identities=21% Similarity=0.092 Sum_probs=30.9
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh--hcccCCccEE
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ--ALHWRGKLTY 134 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g--ll~~p~~G~i 134 (234)
..++++++++++ .++|+|++|||||||++.|.| +++ +++|.+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-~~~~~v 67 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-RGSGIV 67 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-CCSSSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-CCCCcc
Confidence 468899999998 899999999999999999999 444 444443
No 204
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.83 E-value=8.8e-06 Score=65.33 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+++|+|+|||||||++++|++ + |...++++++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l-----g~~~id~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L-----GVPLVDADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T-----TCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-----CCcccchHHH
Confidence 689999999999999999998 3 3445665543
No 205
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.83 E-value=7.5e-05 Score=63.37 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.++.|+|++||||||+++.|+..+ .|...++.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r 38 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYR 38 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHH
Confidence 578999999999999999998732 145566655543
No 206
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.82 E-value=5.2e-06 Score=66.33 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=37.7
Q ss_pred eeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc----c---cCCccEEEEcCcc
Q 026740 83 LWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL----H---WRGKLTYILDGDN 140 (234)
Q Consensus 83 ~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll----~---~p~~G~i~~~g~~ 140 (234)
+|.|++. .+++++|+..+++. ++|+|++|+|||||++.+.+-- . .+..+.+.+++..
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 3455443 67889999988875 7899999999999999998621 1 1345667776643
No 207
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.77 E-value=4.8e-06 Score=73.25 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=34.2
Q ss_pred cccccceeeecCCEE--EEEEcCCCCcHHHHHHHHHhhcc
Q 026740 90 DKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~--~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+++.+++.+++|++ ++|+|++||||||++++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 467888899999988 99999999999999999999765
No 208
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.77 E-value=1.3e-05 Score=64.21 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026740 104 VIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~g 124 (234)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 209
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.76 E-value=1.5e-05 Score=62.67 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.7
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.+|.+++|+|++||||||+++.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 210
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.75 E-value=2.5e-05 Score=63.18 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=25.7
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+.++++.+ .+.+|+|||||||||++.+|.-.+.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34555555 4899999999999999999875443
No 211
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.70 E-value=8.4e-05 Score=67.29 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=34.7
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
...|+++..-+++|+++.|.|++|+|||||+..+++...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788887899999999999999999999999998765
No 212
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.69 E-value=3e-05 Score=68.26 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=34.7
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE-EEEcCcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT-YILDGDN 140 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~-i~~~g~~ 140 (234)
-+++|+++.|.||||||||||+..++.... +..|. +++++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-KMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccc
Confidence 378999999999999999999999999876 44554 5777654
No 213
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.69 E-value=3.1e-05 Score=61.26 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=27.1
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc----c---cCCccEEEEcCc
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL----H---WRGKLTYILDGD 139 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll----~---~p~~G~i~~~g~ 139 (234)
.+++++++..++. .++++|++|+|||||++.+.+-. . .+..+.+.+++.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4678899988887 57899999999999999999731 1 023456666664
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.68 E-value=3.7e-05 Score=63.83 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=32.1
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+.++++.+++| +.|.||+|+|||||+++|++.+.. -.+.+++.++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~---~~~~i~~~~~~ 82 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV---PFFTISGSDFV 82 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC---CEEEECSCSST
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC---CEEEEeHHHHH
Confidence 44555566666 889999999999999999997752 24677776654
No 215
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.68 E-value=2.3e-05 Score=60.52 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 216
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.66 E-value=2.6e-05 Score=67.96 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=28.0
Q ss_pred HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026740 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (234)
Q Consensus 190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~ 227 (234)
..++.++..+.+ +++|||+..|+......+++.+++
T Consensus 264 ~~a~~l~~~p~~--lllDEp~~~LD~~~~~~l~~~l~~ 299 (339)
T 3qkt_A 264 AMSLYLAGEISL--LILDEPTPYLDEERRRKLITIMER 299 (339)
T ss_dssp HHHHHTTTTTCE--EEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence 455666777777 899999999988887888776653
No 217
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.65 E-value=3.5e-05 Score=61.08 Aligned_cols=38 Identities=26% Similarity=0.181 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccC--CccEEEEcCcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDN 140 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p--~~G~i~~~g~~ 140 (234)
.+++|+|+||||||||++.|.+.+... .-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 578999999999999999999976521 23667766543
No 218
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.64 E-value=6.4e-06 Score=72.63 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=36.0
Q ss_pred cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
-+.+.+++..|+...+.++++|+| +|+|++|+|||||++.|.+..
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 355677888888888889999887 999999999999999997753
No 219
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.59 E-value=3e-05 Score=75.29 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=27.5
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHH
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLl 119 (234)
|+|||++|+.|++++|.|.||||||||+
T Consensus 26 Lkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 26 LKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp CCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 8999999999999999999999999998
No 220
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.58 E-value=3.9e-05 Score=63.09 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.6
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.+|.+++|+|++||||||+++.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999999844
No 221
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.55 E-value=8.8e-05 Score=71.91 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=36.1
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+|.+.+|+.+.|+||||||||||+++|++.+. . ..+.+++.++.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-~--~~i~v~~~~l~ 275 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG-A--FFFLINGPEIM 275 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT-C--EEEEEEHHHHS
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-C--cEEEEEchHhh
Confidence 34688999999999999999999999999875 2 34777776654
No 222
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.55 E-value=4.4e-05 Score=59.91 Aligned_cols=26 Identities=27% Similarity=0.389 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
|.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988654
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.54 E-value=4.9e-05 Score=59.20 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=23.2
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
++|..++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999853
No 224
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.53 E-value=4.9e-05 Score=63.49 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+++|+||||||||||++.|+..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998654
No 225
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.53 E-value=3.7e-05 Score=60.26 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=24.4
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
+.++.+++|+|++||||||+++.|+..+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3567789999999999999999998655
No 226
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.52 E-value=4.7e-05 Score=72.28 Aligned_cols=39 Identities=23% Similarity=0.071 Sum_probs=29.9
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-CCccEE
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTY 134 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i 134 (234)
|++++++..++|+|++|+|||||++.|++.... +..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 467889999999999999999999999976541 144655
No 227
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.52 E-value=5.3e-05 Score=59.52 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+..++|+|++||||||+++.|+..+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988664
No 228
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.50 E-value=4.6e-05 Score=59.53 Aligned_cols=33 Identities=48% Similarity=0.558 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
.++|+|++||||||+++.|+..+. ..+++.+++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccHH
Confidence 589999999999999999998664 235665554
No 229
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.49 E-value=5.3e-05 Score=58.21 Aligned_cols=19 Identities=63% Similarity=0.844 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 026740 104 VIWITGLSGSGKSTLACAL 122 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l 122 (234)
+++|.|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 230
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.48 E-value=7.4e-05 Score=60.44 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
++-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 231
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.48 E-value=4.8e-05 Score=74.78 Aligned_cols=29 Identities=45% Similarity=0.543 Sum_probs=27.7
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHH
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLl 119 (234)
=|+|||++|+++++++|.|+||||||||+
T Consensus 35 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 35 NLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred ccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 38999999999999999999999999996
No 232
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.48 E-value=5.1e-05 Score=65.07 Aligned_cols=28 Identities=32% Similarity=0.216 Sum_probs=24.2
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++.+++|+|++|+|||||++.|.|.-
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3455689999999999999999999963
No 233
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.47 E-value=5e-05 Score=74.47 Aligned_cols=29 Identities=41% Similarity=0.586 Sum_probs=27.7
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHH
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLl 119 (234)
=|+|||++|+++++++|.|+||||||||+
T Consensus 33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 48999999999999999999999999986
No 234
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.47 E-value=6.3e-05 Score=62.39 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.+-+++|.||+||||||+++.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45589999999999999999999654
No 235
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.46 E-value=7.9e-05 Score=59.44 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+|.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999998775
No 236
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.46 E-value=8.8e-05 Score=66.81 Aligned_cols=39 Identities=26% Similarity=0.186 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc-----------cCCccEEEEcCccc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH-----------WRGKLTYILDGDNC 141 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~-----------~p~~G~i~~~g~~v 141 (234)
-.++|+|+||+|||||++.|+|... .+..|.+.++|+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 4799999999999999999999742 14468888998764
No 237
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.46 E-value=7.7e-05 Score=59.34 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=24.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
+|.+++|.|++||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999865
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.45 E-value=0.00043 Score=60.35 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=33.5
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccC------CccEEEEcCcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGDN 140 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p------~~G~i~~~g~~ 140 (234)
-+++|+++.|.|++|||||||+..++.....| ..+.++++.+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 48899999999999999999999998853212 34566777654
No 239
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.45 E-value=4.5e-05 Score=74.71 Aligned_cols=29 Identities=41% Similarity=0.512 Sum_probs=27.8
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHH
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLl 119 (234)
=|+|||++|+++++++|.|+||||||||+
T Consensus 13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 13 NLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 38999999999999999999999999997
No 240
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.44 E-value=7.3e-05 Score=59.27 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999664
No 241
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.43 E-value=9.1e-05 Score=58.78 Aligned_cols=35 Identities=43% Similarity=0.357 Sum_probs=27.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+..+++|+|++||||||+++.|+.. |...++.+++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~ 41 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL 41 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence 3568999999999999999999874 4446665543
No 242
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.43 E-value=3.4e-05 Score=61.89 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998875
No 243
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.43 E-value=8e-05 Score=59.61 Aligned_cols=29 Identities=41% Similarity=0.481 Sum_probs=25.4
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+|.+++|.|++||||||+++.|+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999987654
No 244
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.42 E-value=8e-05 Score=58.77 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=25.1
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..++.+++|+|++||||||+++.|+..+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678999999999999999999987553
No 245
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.42 E-value=0.0001 Score=64.69 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=32.6
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
-+++|+++.|.|+||||||||+..++......+...++++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 478999999999999999999988886554244445566654
No 246
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.41 E-value=8.3e-05 Score=59.57 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=25.2
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+|.+++|.|++||||||+++.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999997654
No 247
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.41 E-value=9.7e-05 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
++.+++|.|++||||||+++.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 248
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.41 E-value=8.1e-05 Score=66.40 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=32.6
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhh-----------cccCCccEEEEcCc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQA-----------LHWRGKLTYILDGD 139 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gl-----------l~~p~~G~i~~~g~ 139 (234)
.+..|..++|+|+||+|||||+++|+|. +. |..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~-p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID-PNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------C-CSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccC-ceeEEEEECCc
Confidence 4567888999999999999999999987 33 66777777664
No 249
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.40 E-value=3.3e-05 Score=65.59 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEEcCc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGD 139 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~~g~ 139 (234)
..+.|.||+|+||||++++|++.+. ...+ .+.++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-~~~~~~~~~~~~ 84 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDMT 84 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-SCGGGEEEEEGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-CCCcceEEeecc
Confidence 6899999999999999999999886 4444 4455533
No 250
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.40 E-value=4.1e-05 Score=60.65 Aligned_cols=30 Identities=33% Similarity=0.345 Sum_probs=25.7
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+..+.+++|+|++||||||+++.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678999999999999999999988653
No 251
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=0.0001 Score=57.49 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 252
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.38 E-value=0.00012 Score=64.64 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=30.6
Q ss_pred CEE-EEEEcCCCCcHHHHHHHHHhhccc----------CCccEEEEcCccc
Q 026740 102 GCV-IWITGLSGSGKSTLACALSQALHW----------RGKLTYILDGDNC 141 (234)
Q Consensus 102 Ge~-~~liG~nGsGKSTLlr~l~gll~~----------p~~G~i~~~g~~v 141 (234)
|-. ++|+|++|||||||++.|+|.... +..|.+.++|..+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 444 899999999999999999996531 3568899988664
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.35 E-value=0.00011 Score=58.88 Aligned_cols=23 Identities=48% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999997644
No 254
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.34 E-value=0.00011 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|++|+|||||++.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 255
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.33 E-value=0.00011 Score=57.55 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|.|++||||||+++.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998765
No 256
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.33 E-value=9.9e-05 Score=66.59 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=33.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
++.+++++|++||||||++..|+..+. +..+.+.+-+-|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCc
Confidence 689999999999999999999999987 5667776654443
No 257
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.32 E-value=0.00012 Score=58.20 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|.|++||||||+++.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998653
No 258
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.30 E-value=3.4e-05 Score=70.51 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=37.7
Q ss_pred cCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 86 ~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+.....+.++++.+++| +.|+||+|+|||||+|+|++.... --+.+++.++
T Consensus 35 l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---~f~~is~~~~ 85 (476)
T 2ce7_A 35 LKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---PFFHISGSDF 85 (476)
T ss_dssp HHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGT
T ss_pred hhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---CeeeCCHHHH
Confidence 33445677788888888 789999999999999999997642 2344554443
No 259
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.27 E-value=0.00025 Score=58.79 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=30.2
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----CccEEEEcCcccc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCR 142 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-----~~G~i~~~g~~v~ 142 (234)
.+.-+++|.|++||||||+++.|+..+..+ ....+.++.+++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 345689999999999999999998865422 1234456655553
No 260
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.27 E-value=0.00014 Score=63.97 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=25.8
Q ss_pred ccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
++..+++.+| +.+|+|+|||||||++.+|.=
T Consensus 17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4566676664 899999999999999999974
No 261
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.27 E-value=0.00017 Score=55.73 Aligned_cols=26 Identities=42% Similarity=0.486 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
=++++|+|+.||||||+++.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988654
No 262
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.26 E-value=0.00016 Score=58.56 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+|.+++|+|++||||||+++.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999988654
No 263
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.25 E-value=0.00019 Score=56.20 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.+.+++|+|++||||||+++.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 264
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.25 E-value=0.00014 Score=62.19 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=33.3
Q ss_pred eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+.+.++..+.|.||+|+|||||+++|++.+. .+.+.+++.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~~l 85 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL 85 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhHHH
Confidence 4567888999999999999999999999764 35666665443
No 265
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.25 E-value=0.00014 Score=66.84 Aligned_cols=47 Identities=17% Similarity=-0.058 Sum_probs=35.7
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHHHHHh-hcccCCccEEEEcCcc
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQ-ALHWRGKLTYILDGDN 140 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g-ll~~p~~G~i~~~g~~ 140 (234)
.+++++.++..+.|.|.+||||||++++|.. ++...+.+.+.+.+.|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 4788899999999999999999999999875 3332445666554433
No 266
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.24 E-value=0.00019 Score=57.26 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=24.6
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
-..+.+++|+|++||||||+++.|+..+.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566899999999999999999987654
No 267
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.24 E-value=0.00022 Score=63.00 Aligned_cols=35 Identities=23% Similarity=0.041 Sum_probs=28.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~ 136 (234)
.+..++|+|+|||||||+++.|+..+. ...+.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEE
Confidence 566789999999999999999998776 45555544
No 268
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.23 E-value=0.00018 Score=56.75 Aligned_cols=24 Identities=46% Similarity=0.538 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 269
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.23 E-value=0.00066 Score=62.60 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=31.3
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
....+++++|++||||||+++.|+..+.++.-....++.+++
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 455789999999999999999998877544434445555444
No 270
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.22 E-value=0.00014 Score=57.12 Aligned_cols=34 Identities=41% Similarity=0.470 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
.+++|+|++||||||+++.|+..+.. ..++.+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~-----~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV-----GLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC-----CEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC-----CEEeCchH
Confidence 36899999999999999999886542 25555554
No 271
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.22 E-value=0.00022 Score=56.84 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=23.4
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++.+++|.|++||||||+++.|+..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 272
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.21 E-value=0.00019 Score=56.59 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+++|+|++|||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998775
No 273
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.20 E-value=0.00017 Score=55.78 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|+|++||||||+++.|+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988653
No 274
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.19 E-value=0.00019 Score=58.41 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.6
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++.+++|+|++||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
No 275
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.19 E-value=0.00028 Score=64.93 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=32.9
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC--ccEEEEcCcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDN 140 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~--~G~i~~~g~~ 140 (234)
.+.|.+++|+|++||||||+.+.|+..+.... ....++||++
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 47889999999999999999999999886211 2244667665
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.19 E-value=0.00021 Score=57.49 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++|+|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999977553
No 277
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.18 E-value=0.00018 Score=58.38 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++.+++|+|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987654
No 278
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.18 E-value=0.00023 Score=55.92 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998663
No 279
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.17 E-value=0.00034 Score=60.39 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=33.9
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccC------CccEEEEcCcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGDN 140 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p------~~G~i~~~g~~ 140 (234)
-+++|+++.|.|++|||||||+..++.....+ ..+.++++.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 57899999999999999999999998754323 34567776654
No 280
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.15 E-value=0.00025 Score=54.57 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
No 281
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00026 Score=57.01 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++|+|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976543
No 282
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.13 E-value=0.00018 Score=56.37 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.13 E-value=0.0003 Score=58.24 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.9
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++-+++|+|++||||||+++.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 284
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.08 E-value=0.0015 Score=59.23 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=28.5
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~ 137 (234)
....++.++|.+||||||+++.|+..+..+...+..++
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 34568999999999999999999987654443445544
No 285
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.07 E-value=0.00037 Score=57.06 Aligned_cols=32 Identities=38% Similarity=0.439 Sum_probs=27.2
Q ss_pred eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+-...+..++.|+||+||||+|.++.|+..+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45567889999999999999999999987653
No 286
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.05 E-value=0.00051 Score=55.41 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=24.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998765
No 287
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.04 E-value=0.00035 Score=56.05 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
--+++|+|++||||||+++.|+..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998753
No 288
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.03 E-value=0.00046 Score=59.61 Aligned_cols=37 Identities=30% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
.....+++..+.+ .|.-+.|+|+||+||||++..|.+
T Consensus 130 ~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 130 ARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp CEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3456678888888 789999999999999999999987
No 289
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.03 E-value=0.00017 Score=61.52 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=25.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
++-+++|.|++||||||+++.|...+.....-...++.+++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999988553111112355555543
No 290
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.98 E-value=0.0004 Score=56.19 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+|-.++|+|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987653
No 291
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.98 E-value=0.00064 Score=55.04 Aligned_cols=36 Identities=33% Similarity=0.223 Sum_probs=28.1
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
...++..-+.+ .|..+.|+||+|||||||+..|+..
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34455555554 5788999999999999999999764
No 292
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.98 E-value=0.00059 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+.|.||+|+|||||+++|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999998775
No 293
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.97 E-value=0.00046 Score=58.47 Aligned_cols=25 Identities=44% Similarity=0.555 Sum_probs=22.1
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
.+..+++|+|++||||||+++.|+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999984
No 294
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.96 E-value=0.00072 Score=58.75 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=30.4
Q ss_pred cCCE--EEEEEcCCCCcHHHHHHHHHhhcccCC--ccEEEEcCc
Q 026740 100 QKGC--VIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGD 139 (234)
Q Consensus 100 ~~Ge--~~~liG~nGsGKSTLlr~l~gll~~p~--~G~i~~~g~ 139 (234)
..+. .+.|.||+|+|||||++.+++.+. +. ...++++..
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYK-DKTTARFVYINGF 82 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHT-TSCCCEEEEEETT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHh-hhcCeeEEEEeCc
Confidence 3456 899999999999999999999886 43 345666643
No 295
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.93 E-value=0.00054 Score=56.11 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999654
No 296
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.92 E-value=0.00043 Score=59.88 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=30.3
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccC---CccEEEEcC
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDG 138 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p---~~G~i~~~g 138 (234)
..+..+.|.||+|+|||||++.+++.+... ....++++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 567789999999999999999999977521 334566654
No 297
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.92 E-value=0.00051 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 298
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.90 E-value=0.0031 Score=54.99 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=31.8
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44566655799999999999999999999999887654
No 299
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.87 E-value=0.0011 Score=52.03 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc----ccCCcc----EEEEcCccc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL----HWRGKL----TYILDGDNC 141 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll----~~p~~G----~i~~~g~~v 141 (234)
.++|+|++|+|||||++.+.+-. ..|+.+ .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 58999999999999997766543 124455 566777554
No 300
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.87 E-value=0.00063 Score=55.64 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=23.9
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+..++|+|+.||||||+++.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999987654
No 301
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.86 E-value=0.00058 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 302
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.83 E-value=0.00077 Score=58.79 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=24.5
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++.+++|+||+|||||||+..|+..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4567999999999999999999998653
No 303
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.83 E-value=0.00068 Score=59.19 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+++|+||+|||||||++.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998653
No 304
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.82 E-value=0.00069 Score=57.12 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++..+.|.||+|+||||+++++++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 466789999999999999999998654
No 305
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.82 E-value=0.00058 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
+.+++|+|++||||||+++.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998854
No 306
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.82 E-value=0.0008 Score=51.90 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.0
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+..+.|.||+|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998764
No 307
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.80 E-value=0.00088 Score=54.54 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=25.0
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
-+|.+++|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999988775
No 308
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.80 E-value=0.00026 Score=56.72 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999988764
No 309
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.79 E-value=0.00063 Score=56.98 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 310
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.79 E-value=0.001 Score=58.58 Aligned_cols=37 Identities=32% Similarity=0.204 Sum_probs=28.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhc----------ccCCccEEEEcC
Q 026740 102 GCVIWITGLSGSGKSTLACALSQAL----------HWRGKLTYILDG 138 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll----------~~p~~G~i~~~g 138 (234)
|..++|+|.+|+|||||++.|++.- ..|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3468999999999999999999832 015567777665
No 311
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.78 E-value=0.0072 Score=51.86 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=35.5
Q ss_pred ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026740 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (234)
Q Consensus 89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~ 137 (234)
...|+++.--+++|+++.|.|++|+|||||+..++...-......+++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456666656999999999999999999999888754431222344444
No 312
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.00084 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999854
No 313
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.73 E-value=0.00069 Score=55.82 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=22.6
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+|.+++|.|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999988765
No 314
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.73 E-value=0.00089 Score=50.69 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 315
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.73 E-value=0.00099 Score=57.77 Aligned_cols=25 Identities=40% Similarity=0.596 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+++|+||+|||||||++.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998653
No 316
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.72 E-value=0.0011 Score=54.38 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=25.6
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.-.+|.+++|.|++||||||+++.|...+.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999999988765
No 317
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.72 E-value=0.00089 Score=55.46 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=25.0
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+|.+++|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999988775
No 318
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.72 E-value=0.001 Score=54.53 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+|.+++|.|+.||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998763
No 319
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.00048 Score=59.25 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=29.5
Q ss_pred CccccccceeeecCC--EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 88 SVDKRDRQQLLQQKG--CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 88 ~~~~l~~vs~~i~~G--e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
...+++.+...+..| ..+.|.||+|+||||+++++++.+.
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334455555445554 3489999999999999999999764
No 320
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.70 E-value=0.00081 Score=56.27 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.8
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+..+.-+.|.||+|+|||||+++++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35566799999999999999999998764
No 321
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.69 E-value=0.00092 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 322
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.69 E-value=0.00064 Score=55.69 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.9
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
.+..|+.+++.||+||||||++..+..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 456899999999999999998876653
No 323
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.68 E-value=0.001 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998853
No 324
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.67 E-value=0.0012 Score=57.00 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
+.+++|+||+|||||||+..|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5689999999999999999998754
No 325
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.67 E-value=0.001 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988643
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.67 E-value=0.0011 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 327
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.66 E-value=0.0011 Score=53.71 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++.|+||+||||+|.++.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998654
No 328
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.64 E-value=0.0011 Score=50.08 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 329
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0011 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 330
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.62 E-value=0.0012 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998854
No 331
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.62 E-value=0.001 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998754
No 332
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.62 E-value=0.0016 Score=57.20 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=32.5
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
+++|+++.|.|++|||||||+..++..........++++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 78999999999999999999988876554234456677764
No 333
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.62 E-value=0.0013 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
+.-.++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999874
No 334
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.62 E-value=0.0012 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 335
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.61 E-value=0.0012 Score=50.15 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999875
No 336
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.61 E-value=0.0011 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 337
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.61 E-value=0.0012 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 338
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.59 E-value=0.0012 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 339
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.59 E-value=0.0013 Score=53.66 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=24.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+|.++++-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998775
No 340
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.58 E-value=0.001 Score=51.22 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999998764
No 341
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.58 E-value=0.0013 Score=56.37 Aligned_cols=27 Identities=30% Similarity=0.307 Sum_probs=23.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+..+.|.||+|+|||||++.|+..+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 456789999999999999999999775
No 342
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.58 E-value=0.0011 Score=50.28 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999764
No 343
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.56 E-value=0.0013 Score=50.47 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 344
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.55 E-value=0.0015 Score=53.74 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.7
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+.-+.|.||+|+||||++++++..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445688999999999999999998664
No 345
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.55 E-value=0.00054 Score=66.41 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=36.0
Q ss_pred ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
.++.+.++..+.|.||||+|||||+++|++.+. .+.+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT---CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC---CCEEEEechHhh
Confidence 366778999999999999999999999999875 245566665543
No 346
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.55 E-value=0.0014 Score=53.50 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=25.9
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+|.++++-|++||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999999999876
No 347
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.55 E-value=0.00085 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999997743
No 348
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.54 E-value=0.0018 Score=55.90 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+.+++|+||+|||||||+..|+..+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356899999999999999999997653
No 349
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.53 E-value=0.00086 Score=55.84 Aligned_cols=29 Identities=31% Similarity=0.222 Sum_probs=24.4
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..++.+++|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35778999999999999999999987663
No 350
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.53 E-value=0.0013 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 351
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.53 E-value=0.0015 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 352
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.52 E-value=0.0014 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998853
No 353
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.51 E-value=0.0015 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999986
No 354
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.50 E-value=0.0015 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.49 E-value=0.0016 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
No 356
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.49 E-value=0.0016 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998843
No 357
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.48 E-value=0.0014 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999853
No 358
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.48 E-value=0.00058 Score=56.71 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=25.2
Q ss_pred cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+..+....| +.|.||+|+|||||+++|+..+.
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 334445555 77999999999999999998654
No 359
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.47 E-value=0.0024 Score=48.51 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 102 GCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
.-.++++|++|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999763
No 360
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.47 E-value=0.0017 Score=49.02 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++++|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 361
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.46 E-value=0.0017 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.061 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.++|+|++|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 479999999999999999998654
No 362
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.46 E-value=0.0014 Score=50.88 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998853
No 363
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.45 E-value=0.0017 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999998643
No 364
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.45 E-value=0.0012 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 102 GCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 365
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.45 E-value=0.0011 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999764
No 366
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.44 E-value=0.0017 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 367
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.44 E-value=0.0018 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999874
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.43 E-value=0.0018 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++++|.+|+|||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 369
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.43 E-value=0.0034 Score=56.72 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=25.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998876
No 370
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.43 E-value=0.0018 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 371
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0018 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 372
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.43 E-value=0.0018 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|.+|+|||||++.|.|.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999999854
No 373
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.41 E-value=0.002 Score=55.27 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=25.4
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
-+++|+++.|.|++|||||||+..++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988863
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.39 E-value=0.0021 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 375
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.39 E-value=0.002 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 376
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.38 E-value=0.0019 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 377
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.38 E-value=0.0023 Score=50.59 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=24.4
Q ss_pred cccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
++..-+. -.|.-+.|.|+||+|||||+..|..
T Consensus 7 lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3333333 4577899999999999999988865
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.002 Score=51.56 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.--.++|+|.+|||||||++.|++.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33579999999999999999998764
No 379
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.35 E-value=0.0021 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 380
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.33 E-value=0.0021 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 381
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.32 E-value=0.0022 Score=49.93 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+.-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 382
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.31 E-value=0.0023 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 383
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.31 E-value=0.0023 Score=49.22 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 384
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.30 E-value=0.0023 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 385
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.29 E-value=0.0024 Score=49.23 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 386
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0022 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|++|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35899999999999999999874
No 387
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0023 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 388
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0021 Score=51.01 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=23.8
Q ss_pred ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++.|.-..--.++|+|++|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 344444334446899999999999999999874
No 389
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.27 E-value=0.0023 Score=48.33 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.5
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+.-+.|.||+|+|||++++.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3455689999999999999999998653
No 390
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.26 E-value=0.003 Score=48.52 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 391
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.26 E-value=0.0022 Score=56.53 Aligned_cols=21 Identities=52% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 026740 105 IWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 105 ~~liG~nGsGKSTLlr~l~gl 125 (234)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999986
No 392
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.25 E-value=0.0025 Score=54.16 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=24.0
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++.+..+.|.||+|+|||+|+++|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455678889999999999999998764
No 393
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.0027 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.8
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHH
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALS 123 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~ 123 (234)
+++|+++.|.|++|+|||||+-.++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999987654
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.25 E-value=0.0026 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 395
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.24 E-value=0.0025 Score=54.52 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 396
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.24 E-value=0.0019 Score=56.41 Aligned_cols=26 Identities=38% Similarity=0.333 Sum_probs=22.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
..-.++++|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999854
No 397
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.24 E-value=0.0026 Score=53.71 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=23.9
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+..+.|.||+|+||||+++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999988774
No 398
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.24 E-value=0.0022 Score=57.69 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999773
No 399
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.24 E-value=0.0015 Score=50.30 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=21.5
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
.+.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999874
No 400
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.22 E-value=0.0025 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999963
No 401
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.22 E-value=0.0026 Score=57.86 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=30.6
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+++.+ +.+-+|+.++|+|+||+|||||++.|+....
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 445555 5677899999999999999999999987654
No 402
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.22 E-value=0.0025 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
+.-.++|+|.+|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34468999999999999999998854
No 403
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.22 E-value=0.0028 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.21 E-value=0.0026 Score=48.94 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026740 104 VIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~g 124 (234)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 405
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0026 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57999999999999999998854
No 406
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.20 E-value=0.0026 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 407
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.20 E-value=0.003 Score=56.37 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+++|+||+|||||||+..|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987654
No 408
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.19 E-value=0.0027 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-+++|+|.+|+|||||++.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999985
No 409
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0027 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999988643
No 410
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.18 E-value=0.0027 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|.+|+|||||++.|.+.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 411
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.18 E-value=0.003 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 412
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.003 Score=49.04 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 413
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.003 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 102 GCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
.-.++|+|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999875
No 414
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.16 E-value=0.0039 Score=49.37 Aligned_cols=25 Identities=32% Similarity=0.210 Sum_probs=20.5
Q ss_pred CCEEEEEEcCCCCcHHHHH-HHHHhh
Q 026740 101 KGCVIWITGLSGSGKSTLA-CALSQA 125 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLl-r~l~gl 125 (234)
+|.++.+.|+.||||||++ +.+..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997 555443
No 415
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.16 E-value=0.0028 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 416
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.15 E-value=0.0017 Score=51.43 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|.+|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 417
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.15 E-value=0.0031 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|.+|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 418
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.15 E-value=0.0031 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|.+|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 419
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.13 E-value=0.0032 Score=49.81 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
..-.++|+|++|+|||||++.+.+-
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446899999999999999999864
No 420
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0029 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
+.-.++|+|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999985
No 421
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.12 E-value=0.0041 Score=48.93 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=21.7
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.+.-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 344578999999999999999998743
No 422
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.12 E-value=0.002 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998663
No 423
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.09 E-value=0.0028 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 424
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.09 E-value=0.0054 Score=53.05 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=30.2
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
.+|..+.|.||+|+||||+++.++..+. .....+.+.+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchh
Confidence 3467899999999999999999999876 333445555433
No 425
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.08 E-value=0.004 Score=51.81 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.1
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.....+.|.||+|+|||||+++++....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4556789999999999999999998654
No 426
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.08 E-value=0.0027 Score=49.17 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|.+|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 427
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.07 E-value=0.0033 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|++|+|||||++.+.+-.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998853
No 428
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.07 E-value=0.0036 Score=48.92 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|.+|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888764
No 429
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.07 E-value=0.0035 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 430
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.07 E-value=0.0037 Score=48.39 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=21.8
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
++.-.++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999999864
No 431
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.06 E-value=0.0032 Score=48.34 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++++|.+|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 432
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.06 E-value=0.0036 Score=49.32 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998765
No 433
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.05 E-value=0.0037 Score=50.18 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
--.++|+|.+|+|||||++.++.-..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999887643
No 434
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.05 E-value=0.004 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998743
No 435
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.05 E-value=0.0039 Score=53.69 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=28.1
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~ 140 (234)
.++.-+.|.||+|+|||+|+++++..+. ...-+.+++.+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~ 81 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSD 81 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHH
Confidence 4456788999999999999999998662 22334454443
No 436
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.04 E-value=0.0011 Score=59.87 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=25.9
Q ss_pred ceeeecCCE--EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 95 QQLLQQKGC--VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 95 vs~~i~~Ge--~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+...+..|. .+.|.||+|+|||||+++|+..+.
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 333344454 489999999999999999999765
No 437
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.04 E-value=0.0025 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 438
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.03 E-value=0.0018 Score=58.26 Aligned_cols=27 Identities=41% Similarity=0.639 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++.+++|+|++|+||||++..|++.+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999875
No 439
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.01 E-value=0.0016 Score=52.17 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|.+|+|||||++.|.+..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998853
No 440
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.01 E-value=0.0081 Score=48.41 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999998775
No 441
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.00 E-value=0.0036 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|.+|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 442
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.99 E-value=0.0035 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 443
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.99 E-value=0.0034 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 102 GCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
.-.++|+|++|+|||||++.+.+-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
No 444
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.99 E-value=0.003 Score=54.63 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.7
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5567899999999999999999998764
No 445
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.99 E-value=0.0043 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
-.++|+|++||||||+++.|+..+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999987554
No 446
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.016 Score=52.11 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=30.7
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+.+..=+.|.||+|+|||+|+++|++.+.. --+.+++-++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~---~~~~v~~~~l~ 243 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKA---AFIRVNGSEFV 243 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTC---EEEEEEGGGTC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecchhh
Confidence 445555889999999999999999997652 34566665543
No 447
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.98 E-value=0.0037 Score=49.11 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=20.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
+.-.++|+|++|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3346899999999999999999864
No 448
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.97 E-value=0.0036 Score=54.55 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++..+.|.||+|+||||++++|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345689999999999999999998653
No 449
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.015 Score=52.40 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=31.7
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+++..=+.|.||+|+|||+|++++++.... --+.+++-++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~---~f~~v~~s~l~ 252 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNA---TFLKLAAPQLV 252 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGGC
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCC---CEEEEehhhhh
Confidence 555666889999999999999999997652 34566666654
No 450
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.96 E-value=0.004 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|.+|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 451
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.96 E-value=0.0037 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+.-+.|.||+|+||||+++.++..+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999998764
No 452
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.96 E-value=0.0031 Score=49.20 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 102 GCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
.-.++|+|.+|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 453
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.95 E-value=0.0022 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|.+|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 454
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.95 E-value=0.0038 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|..|||||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
No 455
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0042 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 456
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.92 E-value=0.0038 Score=49.07 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|.+|+|||||++.+.+-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999988853
No 457
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.91 E-value=0.0037 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 458
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.91 E-value=0.0025 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 459
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.016 Score=51.67 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=29.8
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+.+..=+.|.||+|+|||+|++++++.... --+.+++-++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~---~f~~v~~s~l~ 219 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC---KFIRVSGAELV 219 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTC---EEEEEEGGGGS
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCC---CceEEEhHHhh
Confidence 444444789999999999999999997652 34556555543
No 460
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.015 Score=52.39 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=30.6
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+.+..=+.|.||+|+|||+|+++|++.+.. --+.+++-++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~---~~~~v~~s~l~ 252 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA---NFIFSPASGIV 252 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGTC
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEehhhhc
Confidence 555566889999999999999999997652 34555555543
No 461
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.88 E-value=0.0077 Score=49.82 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~ 137 (234)
.+..+.|.||+|+|||++++.|.........--+.++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 3456889999999999999999987642222345554
No 462
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.81 E-value=0.0056 Score=53.07 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.8
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
-+.+|.++.|.||+|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4778888999999999999999999763
No 463
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.81 E-value=0.0057 Score=52.40 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++.-+.|.||+|+|||+|+++++..+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 445689999999999999999998654
No 464
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.80 E-value=0.005 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++++|.+|+|||||++.|.+--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 465
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.79 E-value=0.0012 Score=56.67 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=28.3
Q ss_pred ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++..+...+..|.-+.|.||+|+|||+|++.++..+.
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444444567899999999999999999998664
No 466
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.78 E-value=0.0052 Score=48.60 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 467
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.78 E-value=0.0051 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 103 CVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll 126 (234)
-.++|+|.+|+|||||++.|.+--
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
No 468
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.78 E-value=0.0088 Score=52.14 Aligned_cols=28 Identities=39% Similarity=0.398 Sum_probs=24.4
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+.-+++|+|++|+|||||+..|++.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999988764
No 469
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.77 E-value=0.005 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|.+|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 470
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.77 E-value=0.0059 Score=53.20 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=24.0
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+.-+.|.||+|+|||||+++|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4456789999999999999999998654
No 471
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0059 Score=49.03 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 026740 104 VIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll 126 (234)
.++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.73 E-value=0.0064 Score=52.08 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+.-+.|.||+|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988654
No 473
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.73 E-value=0.0063 Score=48.81 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
-+++|.|+.||||||+.+.|+..+..+ ++|++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~-----~~D~~ 38 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIP-----LYSKE 38 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCC-----EECHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcC-----EECHH
Confidence 489999999999999999999877532 56643
No 474
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.73 E-value=0.0057 Score=48.49 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=20.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
+.-.++|+|.+|+|||||++.+.+-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3446899999999999999888753
No 475
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.71 E-value=0.0082 Score=52.81 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=30.9
Q ss_pred eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026740 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (234)
Q Consensus 98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~ 139 (234)
-+++|.++.|.|++|+|||||+..++..........++++.+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 378999999999999999999987765443133344566543
No 476
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.69 E-value=0.0064 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|.+|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 477
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.69 E-value=0.0051 Score=50.01 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=24.9
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+++...+.+.||+|+||||++.+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55555789999999999999999998764
No 478
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.68 E-value=0.0065 Score=54.85 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
-+.|+||+|+||||++++|+..+.. ..+.++.-.+
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~---~~~~v~~~~~ 86 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF 86 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEGGGG
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC---Cceeecchhh
Confidence 4789999999999999999998762 3455554443
No 479
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.67 E-value=0.0056 Score=48.06 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.3
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
.+.-.++|+|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445699999999999999999965
No 480
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.028 Score=50.47 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=31.1
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
+++..=+.|.||+|+|||+|+++|++.... --+.+++-++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~---~fi~v~~s~l~ 253 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA---TFLRIVGSELI 253 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTC---EEEEEESGGGC
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCC---CEEEEEHHHhh
Confidence 445555899999999999999999997652 34566666654
No 481
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.66 E-value=0.0065 Score=54.64 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=35.0
Q ss_pred cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-CccEEEEcC
Q 026740 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDG 138 (234)
Q Consensus 90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-~~G~i~~~g 138 (234)
..|+.+.--+++|+++.|.|++|+|||||+..++...... +...+++..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3455555458999999999999999999999888755311 223455543
No 482
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.66 E-value=0.0065 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..++++|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5789999999999999999998653
No 483
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.65 E-value=0.0066 Score=52.60 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.+..+.|.||+|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 484
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.64 E-value=0.006 Score=53.31 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 102 GCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 102 Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
+..+.|.||+|+||||+++.|+..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 44688999999999999999998764
No 485
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.64 E-value=0.0064 Score=48.16 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|++|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 486
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.62 E-value=0.0074 Score=51.66 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 103 CVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
..+.|.||+|+||||+++.++..+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999988654
No 487
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.61 E-value=0.0082 Score=51.99 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=28.1
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHH-Hhhccc-CCccEEEEcCcc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACAL-SQALHW-RGKLTYILDGDN 140 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l-~gll~~-p~~G~i~~~g~~ 140 (234)
+++| ++-|.||+|||||||+-.+ +..... +..-.++++++.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 6789 8999999999999995544 443331 133456777653
No 488
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.023 Score=51.55 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=30.0
Q ss_pred ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026740 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (234)
Q Consensus 99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v 141 (234)
+.+..=+.|.||+|+|||+|+++|++.+.. --+.+.+-++
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~---~fi~vs~s~L 279 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDA---TFIRVIGSEL 279 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTC---EEEEEEGGGG
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCC---CeEEEEhHHh
Confidence 555666889999999999999999997652 2345555444
No 489
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.60 E-value=0.011 Score=53.15 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~ 142 (234)
++.-+.|.||+|+|||||+++++..+. ...--+.+++-++.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~-~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG-SKVPFCPMVGSEVY 102 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC-TTSCEEEEEGGGGC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC-CCceEEEEeHHHHH
Confidence 455688999999999999999999875 33344556655543
No 490
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.60 E-value=0.0025 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=4.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 026740 103 CVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 103 e~~~liG~nGsGKSTLlr~l~gl 125 (234)
-.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998875
No 491
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.0064 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|.+|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 492
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.56 E-value=0.0098 Score=48.73 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=21.4
Q ss_pred cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026740 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (234)
Q Consensus 100 ~~Ge~~~liG~nGsGKSTLlr~l~gll 126 (234)
.+|.++.+.|+.|+||||++..++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999776555444
No 493
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.56 E-value=0.0035 Score=47.23 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gl 125 (234)
.+.-+.|.||+|+|||++++.|...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3455889999999999999998763
No 494
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.55 E-value=0.0067 Score=52.27 Aligned_cols=39 Identities=31% Similarity=0.261 Sum_probs=28.6
Q ss_pred ecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026740 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 85 ~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g 124 (234)
.+.....++..-+.+ .|.-+.|.|+||+||||++-.+..
T Consensus 131 ~la~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 131 QFATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp HTCCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred HhhhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 334445666655555 577899999999999999877643
No 495
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.54 E-value=0.0068 Score=52.87 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 101 ~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
++.-+.|.||+|+|||||+++++..+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 344578999999999999999998664
No 496
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.49 E-value=0.0067 Score=48.12 Aligned_cols=20 Identities=50% Similarity=0.439 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 026740 105 IWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 105 ~~liG~nGsGKSTLlr~l~g 124 (234)
+.|+|++||||||++..++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67999999999999998874
No 497
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.49 E-value=0.0026 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 026740 104 VIWITGLSGSGKSTLACALSQA 125 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gl 125 (234)
.++|+|.+|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998853
No 498
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.41 E-value=0.0046 Score=56.68 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=32.2
Q ss_pred CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
|...+++.+...+..|.-+.|.||+|+|||+|++.|+..+.
T Consensus 26 Gq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 26 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp SCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 34445555555666778899999999999999999998764
No 499
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.39 E-value=0.0096 Score=48.37 Aligned_cols=21 Identities=43% Similarity=0.494 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026740 104 VIWITGLSGSGKSTLACALSQ 124 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~g 124 (234)
-++|+|..||||||+++.+..
T Consensus 11 ~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 500
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.36 E-value=0.0029 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcc
Q 026740 104 VIWITGLSGSGKSTLACALSQALH 127 (234)
Q Consensus 104 ~~~liG~nGsGKSTLlr~l~gll~ 127 (234)
.+.|.||.|+||||+++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998765
Done!