Query 026743
Match_columns 234
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 21:03:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xz9_A Phosphoenolpyruvate-pro 70.5 5.8 0.0002 34.6 5.2 65 85-151 145-213 (324)
2 2lqo_A Putative glutaredoxin R 62.6 14 0.00047 26.4 5.0 55 92-153 16-83 (92)
3 3fjv_A Uncharacterized novel p 57.9 5.7 0.0002 33.7 2.6 27 111-137 84-114 (194)
4 2hwg_A Phosphoenolpyruvate-pro 55.7 17 0.00057 34.5 5.6 64 85-150 394-461 (575)
5 3kz3_A Repressor protein CI; f 55.3 9.3 0.00032 25.1 2.9 64 84-171 1-64 (80)
6 3d8h_A Glycolytic phosphoglyce 55.0 4 0.00014 33.0 1.2 45 19-63 2-47 (267)
7 2wqd_A Phosphoenolpyruvate-pro 54.6 17 0.00057 34.5 5.4 64 85-150 396-463 (572)
8 3eul_A Possible nitrate/nitrit 45.6 70 0.0024 21.9 6.3 60 112-171 88-151 (152)
9 1rwy_A Parvalbumin alpha; EF-h 44.6 6.6 0.00022 26.1 0.8 67 105-171 20-89 (109)
10 1lmb_3 Protein (lambda repress 41.9 20 0.00068 23.7 2.9 64 84-171 6-69 (92)
11 3quf_A Extracellular solute-bi 40.2 6 0.0002 32.3 0.0 20 132-153 151-171 (414)
12 1pva_A Parvalbumin; calcium bi 40.0 6.5 0.00022 26.2 0.2 67 105-171 21-90 (110)
13 2fgx_A Putative thioredoxin; N 39.5 21 0.00071 26.4 2.9 40 90-135 40-79 (107)
14 2cob_A LCOR protein; MLR2, KIA 36.2 25 0.00086 25.8 2.8 24 139-162 13-36 (70)
15 3cz5_A Two-component response 36.0 1E+02 0.0035 21.1 6.7 63 112-174 78-144 (153)
16 3rku_A Oxidoreductase YMR226C; 35.6 7.8 0.00027 31.6 0.0 14 19-32 2-15 (287)
17 2qu8_A Putative nucleolar GTP- 35.4 12 0.0004 28.5 1.0 10 20-29 3-12 (228)
18 2pvb_A Protein (parvalbumin); 34.4 7.9 0.00027 25.8 -0.1 40 132-171 50-89 (108)
19 1z6g_A Guanylate kinase; struc 34.0 8.8 0.0003 30.0 0.1 18 19-36 2-19 (218)
20 2b6h_A ADP-ribosylation factor 33.8 18 0.00062 26.7 1.7 10 20-29 3-12 (192)
21 2l1p_A DNA-binding protein SAT 31.7 7.8 0.00027 29.4 -0.5 25 84-109 58-82 (83)
22 2k8s_A Thioredoxin; dimer, str 30.3 20 0.00068 23.2 1.3 42 91-135 13-54 (80)
23 2vws_A YFAU, 2-keto-3-deoxy su 28.9 34 0.0012 28.4 2.8 37 113-149 145-184 (267)
24 1bu3_A Calcium-binding protein 28.7 17 0.00058 24.1 0.8 41 131-171 50-90 (109)
25 2bf9_A Pancreatic hormone; tur 28.0 53 0.0018 21.7 3.0 25 83-107 10-35 (36)
26 2qry_A Thiamine-binding peripl 26.6 14 0.00047 29.6 0.0 11 20-30 3-13 (330)
27 1p7t_A MSG, malate synthase G; 26.6 79 0.0027 31.6 5.3 40 86-128 395-434 (731)
28 3cux_A Malate synthase; TIM ba 26.5 78 0.0027 30.1 5.1 38 86-126 214-251 (528)
29 2q58_A Fragment, farnesyl pyro 26.4 14 0.00047 32.5 0.0 12 19-30 2-13 (368)
30 4f6o_A Metacaspase-1; rossmann 26.1 3E+02 0.01 24.5 8.6 88 33-155 36-124 (350)
31 2x0s_A Pyruvate phosphate diki 26.1 80 0.0027 31.4 5.3 84 85-169 734-838 (913)
32 3h4x_A Phosphatidylinositol-sp 25.4 1.5E+02 0.005 27.2 6.4 75 98-181 106-186 (339)
33 1h6z_A Pyruvate phosphate diki 25.0 86 0.003 31.6 5.3 44 84-128 733-777 (913)
34 1f8p_A Neuropeptide Y (PNPY); 24.4 65 0.0022 21.3 3.0 25 83-107 10-35 (37)
35 1dxe_A 2-dehydro-3-deoxy-galac 24.4 42 0.0014 27.5 2.5 37 113-149 145-184 (256)
36 1bba_A Bovine pancreatic polyp 24.3 48 0.0016 21.9 2.3 25 83-107 10-35 (36)
37 3fs7_A Parvalbumin, thymic; ca 23.6 17 0.00058 24.1 0.0 41 131-171 50-90 (109)
38 3d40_A FOMA protein; fosfomyci 23.6 23 0.00079 29.7 0.9 18 88-105 44-61 (286)
39 2v5j_A 2,4-dihydroxyhept-2-ENE 23.0 37 0.0013 28.8 2.0 37 113-149 166-205 (287)
40 2acm_A Mucin-1; auto-catalytic 22.9 18 0.00063 26.6 0.1 14 20-33 2-15 (66)
41 2auw_A Hypothetical protein NE 22.9 1.8E+02 0.0061 23.7 6.0 83 85-195 74-163 (170)
42 2w1s_A Hyaluronoglucosaminidas 22.4 18 0.00063 28.8 0.0 22 20-41 3-29 (192)
43 2pvu_A ARTJ; basic amino acid 22.3 18 0.00063 27.3 0.0 27 144-170 177-206 (272)
44 4dcu_A GTP-binding protein ENG 22.3 29 0.00099 30.2 1.2 11 20-30 3-13 (456)
45 2l60_A Peptide YY; GPCR ligand 22.1 81 0.0028 21.3 3.1 25 83-107 14-39 (41)
46 2p5s_A RAS and EF-hand domain 22.0 27 0.00094 25.6 0.9 9 22-30 5-13 (199)
47 4fe7_A Xylose operon regulator 21.7 23 0.00079 29.6 0.5 14 19-32 2-15 (412)
48 1rro_A RAT oncomodulin; calciu 21.6 16 0.00055 24.2 -0.4 32 139-171 57-89 (108)
49 3qz6_A HPCH/HPAI aldolase; str 21.3 93 0.0032 25.9 4.1 37 113-149 143-182 (261)
50 2jn4_A Hypothetical protein FI 20.9 33 0.0011 26.2 1.1 45 20-67 3-48 (87)
51 2wte_A CSA3; antiviral protein 20.9 66 0.0023 26.7 3.1 64 160-230 179-243 (244)
52 5pal_A Parvalbumin; calcium-bi 20.7 41 0.0014 22.2 1.5 40 131-171 49-89 (109)
53 4eo3_A Bacterioferritin comigr 20.6 1E+02 0.0036 26.0 4.3 50 92-153 126-175 (322)
54 2f33_A Calbindin; EF-hand, Ca2 20.6 2.2E+02 0.0074 21.1 5.6 67 95-161 59-143 (263)
55 2qlc_A DNA repair protein RADC 20.5 80 0.0027 24.3 3.3 24 81-104 80-103 (126)
56 1g2y_A Hepatocyte nuclear fact 20.3 40 0.0014 21.8 1.3 22 130-151 11-32 (32)
57 3hdv_A Response regulator; PSI 20.2 2E+02 0.0067 19.0 5.9 49 111-159 79-131 (136)
58 3r4i_A Citrate lyase; TIM beta 20.1 97 0.0033 27.0 4.1 39 86-128 121-159 (339)
59 2iai_A Putative transcriptiona 20.1 28 0.00096 25.9 0.6 13 20-32 3-15 (230)
No 1
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=70.46 E-value=5.8 Score=34.63 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=41.0
Q ss_pred CChHhHHHHHHHHHHHHHHHhhcccccc-ceEEEEeecCcHHHHHHHhh-CCCCCCCCC--hHHHHHHHHH
Q 026743 85 ATPEDLENIAQVKRVLELLRKNRDMLFS-EVKLTIMIEDPREVERRRLL-GIEDSNAPT--RDDLAEALEQ 151 (234)
Q Consensus 85 ~sPeDl~~v~eIkrvL~lLk~~RDMsF~-EVKLTImIEDPR~~Errr~l-GIED~~g~s--rddla~AL~e 151 (234)
-|+++++.++++.+-.+.--+.+...|| ++++-+|||.|+.+..=..+ .. -|++| -.||...+--
T Consensus 145 ~s~~E~~~a~~~v~~~~~~~r~~G~~~~~~~~vg~mIEtp~av~~~d~Ia~~--vD~~siGtnDLtq~~lg 213 (324)
T 2xz9_A 145 SSVEEVRKANSILEEVKAELDREGVKYDKEIKVGIMVEIPSAAVTADILAKE--VDFFSIGTNDLTQYTLA 213 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCCCTTCEEEEEECSHHHHHTHHHHTTT--CSEEEECHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHHHh--CcEEEECHHHHHHHHhC
Confidence 3677776666665444432224455676 59999999999999874433 22 44443 6788876533
No 2
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=62.62 E-value=14 Score=26.44 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHHH-Hhh-C--------CCCC---CCCChHHHHHHHHHhh
Q 026743 92 NIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERR-RLL-G--------IEDS---NAPTRDDLAEALEQVN 153 (234)
Q Consensus 92 ~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Err-r~l-G--------IED~---~g~srddla~AL~eV~ 153 (234)
||...|++|+- +...|.|+.+. +||..++.= ++. | |.|. .+++.+++.++|.++.
T Consensus 16 ~C~~aK~~L~~----~gi~y~~idi~---~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 16 YCLRLKTALTA----NRIAYDEVDIE---HNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVKIA 83 (92)
T ss_dssp SHHHHHHHHHH----TTCCCEEEETT---TCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh----cCCceEEEEcC---CCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHHhc
Confidence 78888887753 57889887654 577665532 222 4 3443 3678899999988864
No 3
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=57.91 E-value=5.7 Score=33.69 Aligned_cols=27 Identities=44% Similarity=0.544 Sum_probs=22.5
Q ss_pred ccceEEEEeecCcHHHHHHHh----hCCCCC
Q 026743 111 FSEVKLTIMIEDPREVERRRL----LGIEDS 137 (234)
Q Consensus 111 F~EVKLTImIEDPR~~Errr~----lGIED~ 137 (234)
=++.|.|+|||=|...|||+. .||||.
T Consensus 84 ~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~ 114 (194)
T 3fjv_A 84 GSNLKATLQIEYENETQRRAALARLVGIEDR 114 (194)
T ss_dssp SSEEEEEEEECCSSHHHHHHHHHHTTTGGGS
T ss_pred CCcEEEEEEEEcCCHHHHHHHHHHhcCccce
Confidence 368999999999999999764 588874
No 4
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=55.71 E-value=17 Score=34.51 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=40.7
Q ss_pred CChHhHHHHHHHHHHHHHHHhhcccccc-ceEEEEeecCcHHHHHHHhh-CCCCCCCCC--hHHHHHHHH
Q 026743 85 ATPEDLENIAQVKRVLELLRKNRDMLFS-EVKLTIMIEDPREVERRRLL-GIEDSNAPT--RDDLAEALE 150 (234)
Q Consensus 85 ~sPeDl~~v~eIkrvL~lLk~~RDMsF~-EVKLTImIEDPR~~Errr~l-GIED~~g~s--rddla~AL~ 150 (234)
-|+++++.++++.+-.+.--+.+...|| ++++-+|||-|+.+..=..+ .. -|++| -.||.+..-
T Consensus 394 ~t~~E~~~a~~~v~~~~~~l~~~G~~~~~~~~vg~MIE~P~a~~~ad~ia~~--vDf~siGtNDLtqy~l 461 (575)
T 2hwg_A 394 ISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKE--VDFFSIGTNDLTQYTL 461 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEECSHHHHHTHHHHHTT--CSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHHHh--CCEEEECHHHHHHHHh
Confidence 4677777776665433322245667787 69999999999998874332 22 44433 567777443
No 5
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=55.35 E-value=9.3 Score=25.10 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=42.7
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCCCchHHH
Q 026743 84 EATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVA 163 (234)
Q Consensus 84 e~sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGriP~dR~A 163 (234)
+.||+++.+...+...|+.+++.+.||-.|+- +.+|| |+ .++-.+..|+.+-+-..
T Consensus 1 ~lt~~~~~~~~~l~~~l~~~r~~~gltq~~lA--------------~~~gv------s~----~~is~~e~g~~~~~~~~ 56 (80)
T 3kz3_A 1 SLTQEQLEDARRLKAIWEKKKNELGLSYESVA--------------DKMGM------GQ----SAVAALFNGINALNAYN 56 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHH--------------HHTTS------CH----HHHHHHHTTSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--------------HHhCc------CH----HHHHHHHcCCCCCCHHH
Confidence 35889999999999999988887776654431 23443 32 34556667776655566
Q ss_pred HHHHHHHH
Q 026743 164 LRMLAEEM 171 (234)
Q Consensus 164 L~~L~eEm 171 (234)
+..|++-+
T Consensus 57 ~~~ia~~l 64 (80)
T 3kz3_A 57 AALLAKIL 64 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
No 6
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=55.03 E-value=4 Score=33.04 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=15.9
Q ss_pred CCCCccccCCcccccccccccchhhhccccc-CccceeccCCCCcc
Q 026743 19 GDNQINQHHPLFAATSWRASKLCLCCSRRSS-QRVVALVGKGDTDL 63 (234)
Q Consensus 19 s~~~~~~hh~~~~~~~~~~s~l~~~~~rr~s-~~~~~~vgked~~l 63 (234)
+|+.+||||++-+..+..-.+|-+.||-.+. |.....-|.-|..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~M~~l~LvRHGet~~n~~~~~~G~~D~pL 47 (267)
T 3d8h_A 2 GSSHHHHHHSSGLVPRGSTYKLTLIRHGESEWNKENRFTGWTDVSL 47 (267)
T ss_dssp ------------------CEEEEEEECCCBTTTTTTBCCTTCCCCB
T ss_pred CccccccccccCCCCcccceEEEEEeCCCCccccccccCCCCCCCc
Confidence 3556777887766654444578888887765 44344445545444
No 7
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=54.61 E-value=17 Score=34.47 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=38.9
Q ss_pred CChHhHHHHHHHHHHHHHHHhhcccccc-ceEEEEeecCcHHHHHHHhh-CCCCCCCC--ChHHHHHHHH
Q 026743 85 ATPEDLENIAQVKRVLELLRKNRDMLFS-EVKLTIMIEDPREVERRRLL-GIEDSNAP--TRDDLAEALE 150 (234)
Q Consensus 85 ~sPeDl~~v~eIkrvL~lLk~~RDMsF~-EVKLTImIEDPR~~Errr~l-GIED~~g~--srddla~AL~ 150 (234)
-|+++++.++++.+-.+.--+.+...|| ++++-+|||-|+.+..=..+ .. -|++ --.||.+.+-
T Consensus 396 ~s~~E~~~a~~~v~~~~~~l~~~G~~~~~~~~vg~MIE~P~a~~~ad~ia~~--vDf~siGtNDLtQ~~l 463 (572)
T 2wqd_A 396 ATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKE--VDFFSIGTNDLIQYTL 463 (572)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTCCCCSCCEEEEEECCHHHHHTHHHHHHH--CSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEEccHHHHHHHHHHHHh--CCEEEECHHHHHHHHh
Confidence 3677777666554332221145667787 69999999999998763322 11 3333 3567776553
No 8
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=45.64 E-value=70 Score=21.90 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=30.4
Q ss_pred cceEEEEeecCcH--HHHHHHhhCCCC--CCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026743 112 SEVKLTIMIEDPR--EVERRRLLGIED--SNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (234)
Q Consensus 112 ~EVKLTImIEDPR--~~Errr~lGIED--~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (234)
..+++.++-.... ...+-..+|..+ ....+.+++..++..+-.|+..-....++.|.+++
T Consensus 88 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~ 151 (152)
T 3eul_A 88 LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEI 151 (152)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---------------
T ss_pred CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeeeCHHHHHHHhhcc
Confidence 4566666655443 333334456654 34678999999999999998877777677666554
No 9
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=44.62 E-value=6.6 Score=26.12 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=33.8
Q ss_pred hhccccccceEEEEeecCcHHHHHHHhhCC---CCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026743 105 KNRDMLFSEVKLTIMIEDPREVERRRLLGI---EDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (234)
Q Consensus 105 ~~RDMsF~EVKLTImIEDPR~~Errr~lGI---ED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (234)
.+--++|.|..-.+........+=++.+.. ....-+|.+|+..+|..+..+..+-....++.+.+++
T Consensus 20 ~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 1rwy_A 20 AADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAG 89 (109)
T ss_dssp STTCCCHHHHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred CCCcEeHHHHHHHHhcCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 444466666543222211222232334433 3333489999999999986422333334455555443
No 10
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=41.93 E-value=20 Score=23.70 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=44.8
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCCCchHHH
Q 026743 84 EATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVA 163 (234)
Q Consensus 84 e~sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGriP~dR~A 163 (234)
..+++++.....|...|+.+++.+.||-.++- +.+|| |+ .++-.+..|+.+-+...
T Consensus 6 ~~~~~~~~~~~~l~~~l~~~R~~~glsq~~lA--------------~~~gi------s~----~~is~~e~g~~~~~~~~ 61 (92)
T 1lmb_3 6 PLTQEQLEDARRLKAIYEKKKNELGLSQESVA--------------DKMGM------GQ----SGVGALFNGINALNAYN 61 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHH--------------HHHTS------CH----HHHHHHHTTSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--------------HHHCc------CH----HHHHHHHcCCCCCCHHH
Confidence 46788888999999999999999888855431 23454 43 35666777876555666
Q ss_pred HHHHHHHH
Q 026743 164 LRMLAEEM 171 (234)
Q Consensus 164 L~~L~eEm 171 (234)
|..|++-+
T Consensus 62 l~~ia~~l 69 (92)
T 1lmb_3 62 AALLAKIL 69 (92)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777665
No 11
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=40.21 E-value=6 Score=32.30 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=11.5
Q ss_pred hCCC-CCCCCChHHHHHHHHHhh
Q 026743 132 LGIE-DSNAPTRDDLAEALEQVN 153 (234)
Q Consensus 132 lGIE-D~~g~srddla~AL~eV~ 153 (234)
+||+ .+. |-||+.+++..+.
T Consensus 151 ~G~~~~P~--Twdel~~~~~~l~ 171 (414)
T 3quf_A 151 AGYDKFPK--TWDEFIEMGKKIN 171 (414)
T ss_dssp TTCSSCCS--BHHHHHHHHHHHH
T ss_pred cCCCCCCC--CHHHHHHHHHHHH
Confidence 4665 332 6667666666654
No 12
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=39.99 E-value=6.5 Score=26.18 Aligned_cols=67 Identities=4% Similarity=0.052 Sum_probs=34.5
Q ss_pred hhccccccceEEEEeecCcHHHHHHHh---hCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026743 105 KNRDMLFSEVKLTIMIEDPREVERRRL---LGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (234)
Q Consensus 105 ~~RDMsF~EVKLTImIEDPR~~Errr~---lGIED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (234)
.+--++|.|..-.+.+......+=++. +......-+|.+|+..+|..+..+..+-...-++.+.+++
T Consensus 21 ~~g~i~~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 21 AEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp STTCCCHHHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 444566666543332222222333334 3433344489999999998875422333334455555544
No 13
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=39.49 E-value=21 Score=26.45 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCC
Q 026743 90 LENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIE 135 (234)
Q Consensus 90 l~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIE 135 (234)
=-+|..++.+|+-|.......|.+|.++ +||...++ +|+.
T Consensus 40 C~~C~~a~~~L~~l~~e~~i~~~~vDId---~d~~l~~~---ygv~ 79 (107)
T 2fgx_A 40 CHLCEEMIASLRVLQKKSWFELEVINID---GNEHLTRL---YNDR 79 (107)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCEEEETT---TCHHHHHH---STTS
T ss_pred ChhHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHH---hCCC
Confidence 3589999999999888777888776654 67876654 6763
No 14
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=36.19 E-value=25 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.2
Q ss_pred CCChHHHHHHHHHhhcCCCCchHH
Q 026743 139 APTRDDLAEALEQVNEGKVPKNRV 162 (234)
Q Consensus 139 g~srddla~AL~eV~eGriP~dR~ 162 (234)
.-|+|+|.+|++.|.+|+..--++
T Consensus 13 ~Yte~~L~~Ai~aVr~g~mS~~~A 36 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGKMSVSKA 36 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCccHHHH
Confidence 368999999999999998544443
No 15
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=36.04 E-value=1e+02 Score=21.05 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=44.1
Q ss_pred cceEEEEeecCc--HHHHHHHhhCCCC--CCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Q 026743 112 SEVKLTIMIEDP--REVERRRLLGIED--SNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQW 174 (234)
Q Consensus 112 ~EVKLTImIEDP--R~~Errr~lGIED--~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm~~W 174 (234)
..+.+.+..... ....+-..+|+.+ ...++.+++..+|..+-+|+.+-....++.|.+++..=
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (153)
T 3cz5_A 78 GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAMSPDIAQEIAEERVEG 144 (153)
T ss_dssp TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEECHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccCChHHHHHHHhhcCCC
Confidence 456666655443 3333333466654 34578899999999999999888888888888877653
No 16
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=35.58 E-value=7.8 Score=31.56 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=0.0
Q ss_pred CCCCccccCCcccc
Q 026743 19 GDNQINQHHPLFAA 32 (234)
Q Consensus 19 s~~~~~~hh~~~~~ 32 (234)
+++.+||||++|+-
T Consensus 2 ~~~~~~~~~~~~~~ 15 (287)
T 3rku_A 2 GSSHHHHHHSSFLV 15 (287)
T ss_dssp --------------
T ss_pred CCccccccccceee
Confidence 35667888888764
No 17
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=35.43 E-value=12 Score=28.48 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCccccCCc
Q 026743 20 DNQINQHHPL 29 (234)
Q Consensus 20 ~~~~~~hh~~ 29 (234)
++.+||||++
T Consensus 3 ~~~~~~~~~~ 12 (228)
T 2qu8_A 3 SSHHHHHHSS 12 (228)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3445555654
No 18
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=34.44 E-value=7.9 Score=25.75 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=23.3
Q ss_pred hCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026743 132 LGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (234)
Q Consensus 132 lGIED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (234)
+.......+|.+|+..+|..+..+..+-...-++.+.+++
T Consensus 50 ~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 50 IDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89 (108)
T ss_dssp HCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 3433334489999999998875422333344455555544
No 19
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=34.03 E-value=8.8 Score=30.00 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCccccCCcccccccc
Q 026743 19 GDNQINQHHPLFAATSWR 36 (234)
Q Consensus 19 s~~~~~~hh~~~~~~~~~ 36 (234)
+|+.+||||+++-..+|+
T Consensus 2 ~~~~~~~~~~~l~~isl~ 19 (218)
T 1z6g_A 2 GSSHHHHHHSSGLVPRGS 19 (218)
T ss_dssp ------------------
T ss_pred CCcccccccccccCCcee
Confidence 356678888888777775
No 20
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=33.78 E-value=18 Score=26.69 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCccccCCc
Q 026743 20 DNQINQHHPL 29 (234)
Q Consensus 20 ~~~~~~hh~~ 29 (234)
++.+||||+.
T Consensus 3 ~~~~~~~~~~ 12 (192)
T 2b6h_A 3 SSHHHHHHSS 12 (192)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4455666654
No 21
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=31.72 E-value=7.8 Score=29.40 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.0
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhccc
Q 026743 84 EATPEDLENIAQVKRVLELLRKNRDM 109 (234)
Q Consensus 84 e~sPeDl~~v~eIkrvL~lLk~~RDM 109 (234)
.||-. ++-|++...|.+-.|++.||
T Consensus 58 ~PsL~-~kIAk~fg~w~~~~~~~~~~ 82 (83)
T 2l1p_A 58 YANVS-AAKCQEFGRWYKHFKKTKDM 82 (83)
T ss_dssp CCCCC-SHHHHHHHHHHHHHHCCSCC
T ss_pred CCCch-HHHHHHHHHHHHHHHHhhhc
Confidence 35655 99999999999999999998
No 22
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=30.35 E-value=20 Score=23.20 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCC
Q 026743 91 ENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIE 135 (234)
Q Consensus 91 ~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIE 135 (234)
-+|..++.+|+-|-+.....|..+++.+.-+++... +.+|+.
T Consensus 13 ~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~gv~ 54 (80)
T 2k8s_A 13 PVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEA---EKAGVK 54 (80)
T ss_dssp HHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHH---HHHTCC
T ss_pred CchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHH---HHcCCC
Confidence 379999999987776666677777665421334333 235653
No 23
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=28.92 E-value=34 Score=28.41 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=26.0
Q ss_pred ceEEEEeecCcHHHHHHH-hhCCCCCCCC--ChHHHHHHH
Q 026743 113 EVKLTIMIEDPREVERRR-LLGIEDSNAP--TRDDLAEAL 149 (234)
Q Consensus 113 EVKLTImIEDPR~~Errr-~lGIED~~g~--srddla~AL 149 (234)
++++.+|||.|..+++=. ++..+--|++ -..||...|
T Consensus 145 ~~~v~~~IEt~~av~~~~eIa~~~gvd~l~iG~~DL~~~l 184 (267)
T 2vws_A 145 SLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASL 184 (267)
T ss_dssp HCEEEEECCSHHHHHTHHHHHTSTTCCEEEECHHHHHHHT
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCCCCEEEEChHHHHHHh
Confidence 589999999999998733 3333334443 478888876
No 24
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=28.71 E-value=17 Score=24.15 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=23.7
Q ss_pred hhCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026743 131 LLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (234)
Q Consensus 131 ~lGIED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (234)
.+.......+|.+|+..+|..+..+..+-...-++.+.+++
T Consensus 50 ~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (109)
T 1bu3_A 50 VIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90 (109)
T ss_dssp HHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHh
Confidence 34443344589999999999885322333334445554443
No 25
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=27.96 E-value=53 Score=21.67 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=21.2
Q ss_pred cCCChHhH-HHHHHHHHHHHHHHhhc
Q 026743 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (234)
Q Consensus 83 ~e~sPeDl-~~v~eIkrvL~lLk~~R 107 (234)
++++|||| +|...+..-+.++-+.|
T Consensus 10 ~dA~~Eela~Y~~~LrhYiNlvTRqR 35 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQQYLNVVTRHR 35 (36)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 57899998 68899999999988776
No 26
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=26.61 E-value=14 Score=29.57 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCccccCCcc
Q 026743 20 DNQINQHHPLF 30 (234)
Q Consensus 20 ~~~~~~hh~~~ 30 (234)
|+.+||||++-
T Consensus 3 ~~~~~~~~~~~ 13 (330)
T 2qry_A 3 SSHHHHHHSSG 13 (330)
T ss_dssp -----------
T ss_pred CcccccccccC
Confidence 45566666653
No 27
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA, cysteine-sulfenic lyase; HET: ACO PG4; 1.95A {Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A 1d8c_A* 2jqx_A
Probab=26.56 E-value=79 Score=31.63 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=30.3
Q ss_pred ChHhHHHHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHH
Q 026743 86 TPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVER 128 (234)
Q Consensus 86 sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Er 128 (234)
+|+|++.+.+++..++-. ..+--+-+|+++|||-+|..-+
T Consensus 395 speEV~~~~~lf~~~E~~---lGlp~gTIKi~vLIET~ra~~n 434 (731)
T 1p7t_A 395 GPQEVAFANKLFTRIETM---LGMAPNTLKMGIMDEERRTSLN 434 (731)
T ss_dssp SHHHHHHHHHHHHHHHHH---TTCCTTCEEEEEEECSHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHh---hCCCCCceEEEEEECCHHHHHh
Confidence 788888888777665543 4555678999999999987643
No 28
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Probab=26.47 E-value=78 Score=30.05 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=29.4
Q ss_pred ChHhHHHHHHHHHHHHHHHhhccccccceEEEEeecCcHHH
Q 026743 86 TPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREV 126 (234)
Q Consensus 86 sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~ 126 (234)
+|+|.+.+.+++..++- ...+.-+-+|+++|||-++.+
T Consensus 214 s~~Ev~~~~~lf~~~E~---~lGlp~gtIki~vlIET~~a~ 251 (528)
T 3cux_A 214 SYLEARLWNDVFVFAQK---YIGIPNGTIKATVLLETIHAS 251 (528)
T ss_dssp SHHHHHHHHHHHHHHHH---HHTCCTTCCEEEEEECSHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhCCCCCceEEEEEeCCHHHH
Confidence 78888888877766554 334556789999999999976
No 29
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=26.44 E-value=14 Score=32.52 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCCccccCCcc
Q 026743 19 GDNQINQHHPLF 30 (234)
Q Consensus 19 s~~~~~~hh~~~ 30 (234)
+|+.+|||||+.
T Consensus 2 ~~~~~~~~~~s~ 13 (368)
T 2q58_A 2 GSSHHHHHHSSG 13 (368)
T ss_dssp ------------
T ss_pred CCccccccccCC
Confidence 456677777763
No 30
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=26.12 E-value=3e+02 Score=24.50 Aligned_cols=88 Identities=15% Similarity=0.291 Sum_probs=52.1
Q ss_pred cccccccchhhhcccccCccceeccCCCCcceecccccccccchhhhhhccCCChHhHHH-HHHHHHHHHHHHhhccccc
Q 026743 33 TSWRASKLCLCCSRRSSQRVVALVGKGDTDLRVAQENDLQDQDQEDEEEEEEATPEDLEN-IAQVKRVLELLRKNRDMLF 111 (234)
Q Consensus 33 ~~~~~s~l~~~~~rr~s~~~~~~vgked~~l~V~~~~~~~~~d~ed~~e~~e~sPeDl~~-v~eIkrvL~lLk~~RDMsF 111 (234)
++|.++...+-...++.++...+||-.... .. ..|++ +.++..+-++|++. .-|
T Consensus 36 ~~~~~~~~~~~~s~~~grr~ALlIGIn~Y~----~~-------------------~~L~g~vnDA~~m~~~L~~~--~Gf 90 (350)
T 4f6o_A 36 QTIQGTDQPYQYSQCTGRRKALIIGINYIG----SK-------------------NQLRGCINDAHNIFNFLTNG--YGY 90 (350)
T ss_dssp BCCTTSCCCBCCCCCCSCEEEEEEECCCTT----ST-------------------TCCSSHHHHHHHHHHHHHHH--SCC
T ss_pred cccCCCCCccccCCCCCCEEEEEEEeCCCC----CC-------------------CCCCCHHHHHHHHHHHHHHh--cCC
Confidence 455444444444566667788999986532 00 12332 34566666666654 457
Q ss_pred cceEEEEeecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcC
Q 026743 112 SEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEG 155 (234)
Q Consensus 112 ~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eG 155 (234)
.+..+++.+.+... ...-+||+.|..||..+-++
T Consensus 91 ~~~~I~lLtd~~~~----------~~~~pTr~nI~~aL~~L~~~ 124 (350)
T 4f6o_A 91 SSDDIVILTDDQND----------LVRVPTRANMIRAMQWLVKD 124 (350)
T ss_dssp CGGGEEEEETTSSC----------GGGSCCHHHHHHHHHHHHTT
T ss_pred Cccceeeecccccc----------cccCCCHHHHHHHHHHHHHh
Confidence 76666666665310 12348999999999987655
No 31
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=26.09 E-value=80 Score=31.37 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=49.0
Q ss_pred CChHhHHHHHH-HHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhh---------CCCCC----CCCChHHHHHHHH
Q 026743 85 ATPEDLENIAQ-VKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLL---------GIEDS----NAPTRDDLAEALE 150 (234)
Q Consensus 85 ~sPeDl~~v~e-IkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~l---------GIED~----~g~srddla~AL~ 150 (234)
.++++++.|++ |.++.+.+...+...+ .+++-||||=|+.+=.=..+ |=.|. =|++|++-...|.
T Consensus 734 ~~~~E~~~~~~~v~~~~~~~~~~~g~~~-~~~vG~MiEvPsaal~ad~~a~~~DFfSiGTNDLTQ~tlg~DRd~~~~~~~ 812 (913)
T 2x0s_A 734 GKKEELSLIREEVVKTAEAVITKSGKRV-HYTVGTMIEVPRAAVTADSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLR 812 (913)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECSHHHHHTHHHHGGGCSEEEECTTHHHHHHHTCCGGGCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCC-CCeEEEEEeHHHHHHHHHHHHHHCCEEEECHhHHHHHHHHHhcCCchhhhh
Confidence 46788888875 4566666666665554 47899999999987432221 11111 1667776332332
Q ss_pred H-------hhcCCCCchHHHHHHHHH
Q 026743 151 Q-------VNEGKVPKNRVALRMLAE 169 (234)
Q Consensus 151 e-------V~eGriP~dR~AL~~L~e 169 (234)
. ..+---|-+..|+..|.+
T Consensus 813 ~y~~~~~~~~dp~~~~~~~~v~~li~ 838 (913)
T 2x0s_A 813 HYGNLGIYAQDPFQSIDQEGIGELVR 838 (913)
T ss_dssp HHHHHTSSSSCTTTSCCTTTHHHHHH
T ss_pred hhhhccccccCCCchhHHHHHHHHHH
Confidence 2 123345666666666654
No 32
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A
Probab=25.44 E-value=1.5e+02 Score=27.25 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=38.4
Q ss_pred HHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCC--CCchH----HHHHHHHHHH
Q 026743 98 RVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGK--VPKNR----VALRMLAEEM 171 (234)
Q Consensus 98 rvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGr--iP~dR----~AL~~L~eEm 171 (234)
.+|+-+|.-=+.--+++-++|+||+--. -....+...+.+.+.+.+|--.+ .|.+- ..|+.-. --
T Consensus 106 ~CL~~IK~WsdahPsh~PViI~LE~K~t--------~~~~~g~~p~~lDaeI~~vFGd~L~tPddvrG~~~TL~eAV-la 176 (339)
T 3h4x_A 106 GCLSDMRAWHDAHPGHRPILLKIEMKDG--------FNAKGGRGPAEFDALIRQKLGDAVYGPGDLTGGHATADEAV-RA 176 (339)
T ss_dssp HHHHHHHHHHHHSTTCCCEEEEEEETTC--------CBGGGTBSHHHHHHHHHHHHGGGBCCHHHHHTTSSSHHHHH-HH
T ss_pred HHHHHHHHHHHhCCCCCceEEEEecccC--------cccccCcCHHHHHHHHHHHhccceEcchhhcccccCHHHHH-hc
Confidence 3344444444456789999999998531 11112233456666666654332 24331 1122100 12
Q ss_pred hcCCCccccc
Q 026743 172 VQWPNLEVEA 181 (234)
Q Consensus 172 ~~WP~LE~e~ 181 (234)
.+||.++...
T Consensus 177 ~GWPSl~slR 186 (339)
T 3h4x_A 177 GGWPSRADLA 186 (339)
T ss_dssp HCCCBTGGGT
T ss_pred CCCCChHHhC
Confidence 7899988653
No 33
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=25.02 E-value=86 Score=31.64 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=31.8
Q ss_pred CCChHhHHHHHHH-HHHHHHHHhhccccccceEEEEeecCcHHHHH
Q 026743 84 EATPEDLENIAQV-KRVLELLRKNRDMLFSEVKLTIMIEDPREVER 128 (234)
Q Consensus 84 e~sPeDl~~v~eI-krvL~lLk~~RDMsF~EVKLTImIEDPR~~Er 128 (234)
=.++++++.++++ .++.+-|.+.....| .+++-+|||=||.+=.
T Consensus 733 V~t~~E~~~~~~~i~~~~~el~~e~g~~~-~~~vG~MiEvPsaal~ 777 (913)
T 1h6z_A 733 VGKKEELSLIREEVVKTAEAVITKSGKRV-HYTVGTMIEVPRAAVT 777 (913)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHSCSCC-CCEEEEEECSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCC-CceEEEEecchHHHHH
Confidence 3467888888775 355555655555666 5999999999999654
No 34
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=24.44 E-value=65 Score=21.27 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=20.9
Q ss_pred cCCChHhH-HHHHHHHHHHHHHHhhc
Q 026743 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (234)
Q Consensus 83 ~e~sPeDl-~~v~eIkrvL~lLk~~R 107 (234)
+.++|||| +|...+.+-+.++-+.|
T Consensus 10 ~~a~pEela~Y~~~Lr~YinlvTRqR 35 (37)
T 1f8p_A 10 EDAPAEDLARYYSALRHYINLITRQR 35 (37)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 56889988 58899999999888776
No 35
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=24.37 E-value=42 Score=27.53 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=26.4
Q ss_pred ceEEEEeecCcHHHHHH-HhhCCCCCCCC--ChHHHHHHH
Q 026743 113 EVKLTIMIEDPREVERR-RLLGIEDSNAP--TRDDLAEAL 149 (234)
Q Consensus 113 EVKLTImIEDPR~~Err-r~lGIED~~g~--srddla~AL 149 (234)
++++.+|||.|..+++= .++..+--+++ -..||...|
T Consensus 145 ~~~v~~~IEt~~av~~~~eIa~~~~vd~l~iG~~DL~~~l 184 (256)
T 1dxe_A 145 NITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAAL 184 (256)
T ss_dssp SCEEEEEECSHHHHHTHHHHHTSTTCCEEEECHHHHHHHT
T ss_pred ccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHh
Confidence 68999999999999873 23333334443 478888887
No 36
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=24.30 E-value=48 Score=21.89 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=20.8
Q ss_pred cCCChHhH-HHHHHHHHHHHHHHhhc
Q 026743 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (234)
Q Consensus 83 ~e~sPeDl-~~v~eIkrvL~lLk~~R 107 (234)
++++|||| +|...+.+-+.++-+.|
T Consensus 10 ~dA~pEela~Y~~~Lr~YiNlvTRqR 35 (36)
T 1bba_A 10 DNATPEQMAQYAAELRRYINMLTRPR 35 (36)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 57899998 68889999998887766
No 37
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=23.65 E-value=17 Score=24.13 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=23.8
Q ss_pred hhCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026743 131 LLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (234)
Q Consensus 131 ~lGIED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (234)
.+......-+|.+|+..+|..+..+..+-....++.+.+++
T Consensus 50 ~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 50 ILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp HHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 44444445589999998888775422333334455554443
No 38
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=23.64 E-value=23 Score=29.66 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=11.1
Q ss_pred HhHHHHHHHHHHHHHHHh
Q 026743 88 EDLENIAQVKRVLELLRK 105 (234)
Q Consensus 88 eDl~~v~eIkrvL~lLk~ 105 (234)
.|.+.+..+.+.|..|++
T Consensus 44 ~~~~~l~~la~~Ia~l~~ 61 (286)
T 3d40_A 44 LDDDAVTRFARNFARLAE 61 (286)
T ss_dssp BCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 345666666666666654
No 39
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=22.99 E-value=37 Score=28.84 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=25.6
Q ss_pred ceEEEEeecCcHHHHHHH-hhCCCCCCCC--ChHHHHHHH
Q 026743 113 EVKLTIMIEDPREVERRR-LLGIEDSNAP--TRDDLAEAL 149 (234)
Q Consensus 113 EVKLTImIEDPR~~Errr-~lGIED~~g~--srddla~AL 149 (234)
++++.+|||.|..+++=. ++..+--|++ -+.||...|
T Consensus 166 ~~~vi~mIEt~~av~n~deIaa~~~vD~l~iG~~DLs~~l 205 (287)
T 2v5j_A 166 QMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADM 205 (287)
T ss_dssp HCEEEEEECSHHHHHTHHHHHTSTTEEEEEECHHHHHHHT
T ss_pred CcEEEEEECcHHHHHHHHHHhCcCCCCEEEECHHHHHHHh
Confidence 589999999999998733 2333333343 478888876
No 40
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=22.94 E-value=18 Score=26.57 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=3.6
Q ss_pred CCCccccCCccccc
Q 026743 20 DNQINQHHPLFAAT 33 (234)
Q Consensus 20 ~~~~~~hh~~~~~~ 33 (234)
++.+||||+.|+.+
T Consensus 2 ~~~~~~~~~~~~ls 15 (66)
T 2acm_A 2 SSHHHHHHSFFFLS 15 (66)
T ss_dssp --------CEEEEE
T ss_pred CCcccccchhHHHH
Confidence 44566777776553
No 41
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=22.87 E-value=1.8e+02 Score=23.69 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=51.5
Q ss_pred CChHhHHH-HHHH-----HHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCC-
Q 026743 85 ATPEDLEN-IAQV-----KRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKV- 157 (234)
Q Consensus 85 ~sPeDl~~-v~eI-----krvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGri- 157 (234)
.+|+-|-. +... -+.|+.|++++++|-.|+ + +.+|| || .++..++.|+.
T Consensus 74 iaPd~LY~~~~~~~~~~s~~~lk~lR~~~glTQ~el-----------A---~~LGv------sr----~tis~yE~G~r~ 129 (170)
T 2auw_A 74 FGRDNVYAWAKEQAGEVSHEMFGDWMHRNNLSLTTA-----------A---EALGI------SR----RMVSYYRTAHKI 129 (170)
T ss_dssp BCHHHHHHHHHHHTTCCCHHHHHHHHHHTTCCHHHH-----------H---HHHTS------CH----HHHHHHHTTSSC
T ss_pred CCHHHHHHhhhhhccCCCcHHHHHHHHHcCCCHHHH-----------H---HHhCC------CH----HHHHHHHcCCCC
Confidence 77777743 2222 135888999999988776 1 35665 33 46677888976
Q ss_pred CchHHHHHHHHHHHhcCCCccccccccCCCccchhhcc
Q 026743 158 PKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVT 195 (234)
Q Consensus 158 P~dR~AL~~L~eEm~~WP~LE~e~~k~~p~ks~Yakat 195 (234)
|.--..|+|++-|-.+=+. .-.|++.| --|||-.
T Consensus 130 iP~~~~lac~~~~~~~~~~--~~~~~~~~--~~~~~~~ 163 (170)
T 2auw_A 130 IPRTIWLACLGWEATRPET--KTLPRTLP--AAYAKGV 163 (170)
T ss_dssp CCHHHHHHHHHHHHTCSCC--SSCCSSCC---------
T ss_pred CCHHHHHHHHHHHhhcccc--cCCcccCh--HHHhccc
Confidence 5666799999977776644 34688888 6688743
No 42
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Probab=22.38 E-value=18 Score=28.77 Aligned_cols=22 Identities=14% Similarity=0.082 Sum_probs=3.9
Q ss_pred CCCccccCCcccc-----cccccccch
Q 026743 20 DNQINQHHPLFAA-----TSWRASKLC 41 (234)
Q Consensus 20 ~~~~~~hh~~~~~-----~~~~~s~l~ 41 (234)
++.+||||+.-+- ++|+++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~assi~ 29 (192)
T 2w1s_A 3 SSHHHHHHSSGLVPRGSHMASNPSLIR 29 (192)
T ss_dssp ---------------------CCEEEE
T ss_pred cccccccccccccccCccccccceEEe
Confidence 4456667765332 677766664
No 43
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=22.32 E-value=18 Score=27.35 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=14.3
Q ss_pred HHHHHHHHhhcCCC---CchHHHHHHHHHH
Q 026743 144 DLAEALEQVNEGKV---PKNRVALRMLAEE 170 (234)
Q Consensus 144 dla~AL~eV~eGri---P~dR~AL~~L~eE 170 (234)
...+++.+|..|++ -.+...+..+.++
T Consensus 177 ~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~ 206 (272)
T 2pvu_A 177 TTVVAIMELLNGGVDAVITDNAVANEYVKN 206 (272)
T ss_dssp SHHHHHHHHHTTSCSEEEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCccEEEeCHHHHHHHHHh
Confidence 34556666667766 3344444444443
No 44
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=22.27 E-value=29 Score=30.19 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCccccCCcc
Q 026743 20 DNQINQHHPLF 30 (234)
Q Consensus 20 ~~~~~~hh~~~ 30 (234)
|+.+||||++-
T Consensus 3 ~~~~~~~~~~~ 13 (456)
T 4dcu_A 3 SSHHHHHHSSG 13 (456)
T ss_dssp -----------
T ss_pred CccccccccCC
Confidence 45566666653
No 45
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=22.08 E-value=81 Score=21.26 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=20.9
Q ss_pred cCCChHhH-HHHHHHHHHHHHHHhhc
Q 026743 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (234)
Q Consensus 83 ~e~sPeDl-~~v~eIkrvL~lLk~~R 107 (234)
+.+||||| +|.+.+.+-+.++-+.|
T Consensus 14 ~~aspEela~Y~~~Lr~YinlvTR~R 39 (41)
T 2l60_A 14 KKLSPEELNRYYASLRHYLNLVTRQR 39 (41)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 67899998 58888988888887766
No 46
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=21.98 E-value=27 Score=25.55 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=0.0
Q ss_pred CccccCCcc
Q 026743 22 QINQHHPLF 30 (234)
Q Consensus 22 ~~~~hh~~~ 30 (234)
.+||||++.
T Consensus 5 ~~~~~~~~~ 13 (199)
T 2p5s_A 5 HHHHHHSSG 13 (199)
T ss_dssp ---------
T ss_pred cccccccCC
Confidence 344444433
No 47
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=21.68 E-value=23 Score=29.56 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCCccccCCcccc
Q 026743 19 GDNQINQHHPLFAA 32 (234)
Q Consensus 19 s~~~~~~hh~~~~~ 32 (234)
+|+.+||||++-+|
T Consensus 2 ~~~~~~~~~~~~~~ 15 (412)
T 4fe7_A 2 GSSHHHHHHSSGLV 15 (412)
T ss_dssp --------------
T ss_pred CCcccccccccCcC
Confidence 34567777777654
No 48
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=21.60 E-value=16 Score=24.20 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=19.5
Q ss_pred CCChHHHHHHHHHhhc-CCCCchHHHHHHHHHHH
Q 026743 139 APTRDDLAEALEQVNE-GKVPKNRVALRMLAEEM 171 (234)
Q Consensus 139 g~srddla~AL~eV~e-GriP~dR~AL~~L~eEm 171 (234)
-+|.+|+..+|..+.. |.-+. ..-++.+.+++
T Consensus 57 ~I~~~el~~~l~~~~~~g~~~~-~~~~~~~~~~~ 89 (108)
T 1rro_A 57 YLDGDELKYFLQKFQSDARELT-ESETKSLMDAA 89 (108)
T ss_dssp EECTHHHHTGGGGTCTTSCCCC-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhccCCCC-HHHHHHHHHHh
Confidence 3899999999888754 33333 33344444443
No 49
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=21.34 E-value=93 Score=25.89 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=26.5
Q ss_pred ceEEEEeecCcHHHHHHH-hhCCCCCCCCC--hHHHHHHH
Q 026743 113 EVKLTIMIEDPREVERRR-LLGIEDSNAPT--RDDLAEAL 149 (234)
Q Consensus 113 EVKLTImIEDPR~~Errr-~lGIED~~g~s--rddla~AL 149 (234)
++++.+|||.|..+++=. ++..+--++++ ..||...|
T Consensus 143 ~~~v~~mIEt~~av~~~~eIaa~~~vd~l~iG~~DL~~~l 182 (261)
T 3qz6_A 143 EIFIMAQIEHVKAVEDIDSILAVQGVDAVIFGPRDLSNDL 182 (261)
T ss_dssp TCEEEEEECCHHHHHTHHHHHTSTTCCEEEECHHHHHHHT
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCCCCEEEECHHHHHHHh
Confidence 689999999999998733 34333344443 68888876
No 50
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=20.92 E-value=33 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=17.4
Q ss_pred CCCccccCCcccc-cccccccchhhhcccccCccceeccCCCCcceecc
Q 026743 20 DNQINQHHPLFAA-TSWRASKLCLCCSRRSSQRVVALVGKGDTDLRVAQ 67 (234)
Q Consensus 20 ~~~~~~hh~~~~~-~~~~~s~l~~~~~rr~s~~~~~~vgked~~l~V~~ 67 (234)
|+.+||||++--- .-|..-+.-+ |+++.+...-|-|-|.+-.|-+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~MKVMI---R~~~~GLs~YVpKKDLEE~VVs 48 (87)
T 2jn4_A 3 SSHHHHHHSSGRENLYFQGMKVMI---RKTATGHSAYVAKKDLEELIVE 48 (87)
T ss_dssp -------------------CCEEE---EECSSCEEEEETTTTEEEEEEE
T ss_pred cccccccccccccceeecCCeEEE---EeCCCceEEEEeCCcchhheee
Confidence 4455666665322 2333233333 4445568888999987776555
No 51
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=20.88 E-value=66 Score=26.67 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhcCCCccccccccCCCccchhhcccCCCCHHHHHhhhccCccccc-ccccCCCCCCCCCC
Q 026743 160 NRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAA-EIEDAGGGDDPEVP 230 (234)
Q Consensus 160 dR~AL~~L~eEm~~WP~LE~e~~k~~p~ks~YakatdTGidp~~AAkRl~idWDsAA-eIe~~~~~de~~vp 230 (234)
++.++.-+.+.|..-=-++.. +....| ..|+.|..-....+ --.-|..|. ++...+..||-.||
T Consensus 179 sksTv~r~L~~Le~~GlV~r~-----~r~~~~-~LT~~G~~l~~~~~-~~~~w~~aq~~~~~~~~~~~~~~~ 243 (244)
T 2wte_A 179 SEKTLINKIAELKKFGILTQK-----GKDRKV-ELNELGLNVIKLNK-SVIESSKSSEELVKENKGKEVNIP 243 (244)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE-----TTTTEE-EECHHHHHHHHHTC-------------------------
T ss_pred CHHHHHHHHHHHHHCCCEEEe-----CCccEE-EECHHHHHHHHHHh-cccccHHHHHHHHhhcCCcccCCC
Confidence 344455555555554444432 111222 35666654333322 234465553 34445566776666
No 52
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=20.75 E-value=41 Score=22.22 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=22.9
Q ss_pred hhCCCCCCCCChHHHHHHHHHhhc-CCCCchHHHHHHHHHHH
Q 026743 131 LLGIEDSNAPTRDDLAEALEQVNE-GKVPKNRVALRMLAEEM 171 (234)
Q Consensus 131 ~lGIED~~g~srddla~AL~eV~e-GriP~dR~AL~~L~eEm 171 (234)
.+.-....-+|.+|+..+|..+.. |.-+.+. -++.+.+++
T Consensus 49 ~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~-~~~~~~~~~ 89 (109)
T 5pal_A 49 ILDKDQSGFIEEEELKGVLKGFSAHGRDLNDT-ETKALLAAG 89 (109)
T ss_dssp HHCTTCSSEECHHHHHTHHHHHCTTCCCCCHH-HHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHh
Confidence 344444445899999999988743 4333333 344444443
No 53
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=20.62 E-value=1e+02 Score=26.02 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhh
Q 026743 92 NIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVN 153 (234)
Q Consensus 92 ~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~ 153 (234)
.+.||.++|+-|. ..||+|+|. ...||-.=... .+.+++|++-+.|+...
T Consensus 126 h~~~~l~~~~~~~-~~~~~~~~~----------I~~RRSiR~F~-~~~V~~e~l~~ileaA~ 175 (322)
T 4eo3_A 126 HVQEVKEALDRLI-EEDLSLNKH----------IEWRRARRALK-KDRVPREELELLIKAAH 175 (322)
T ss_dssp HHHHHHHHHHHHH-HHHTSCCHH----------HHHCCCCCCBC-CCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhc-hhhhHHHHH----------HHhhhccCCcC-ccccCHHHHHHHHHHHH
Confidence 6889999999997 479999984 34454333444 46799999988887653
No 54
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=20.55 E-value=2.2e+02 Score=21.09 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcc--ccccceEEEEee-----------cCcHHHHHHHhhCCCCCC---CCChHHHHHHHHHhhc--CC
Q 026743 95 QVKRVLELLRKNRD--MLFSEVKLTIMI-----------EDPREVERRRLLGIEDSN---APTRDDLAEALEQVNE--GK 156 (234)
Q Consensus 95 eIkrvL~lLk~~RD--MsF~EVKLTImI-----------EDPR~~Errr~lGIED~~---g~srddla~AL~eV~e--Gr 156 (234)
++.+++..+-.+.| ++|.|..-.+.. ......+-++.+..=|.+ .+|.+|+..+|..+.. |.
T Consensus 59 ~~~~l~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~ 138 (263)
T 2f33_A 59 EMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANK 138 (263)
T ss_dssp HHHHHHHHHTTGGGCCBCHHHHHHHTTSCTTHHHHHGGGTSSCHHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHhhhhhHHHHHHHhhccHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCC
Confidence 34455555555554 777775433211 122233344555555544 4899999999988743 54
Q ss_pred CCchH
Q 026743 157 VPKNR 161 (234)
Q Consensus 157 iP~dR 161 (234)
-+.+.
T Consensus 139 ~~~~~ 143 (263)
T 2f33_A 139 TVDDT 143 (263)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 44443
No 55
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=20.52 E-value=80 Score=24.27 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.4
Q ss_pred hccCCChHhHHHHHHHHHHHHHHH
Q 026743 81 EEEEATPEDLENIAQVKRVLELLR 104 (234)
Q Consensus 81 e~~e~sPeDl~~v~eIkrvL~lLk 104 (234)
...+||.+|++.-+.+++.+++|-
T Consensus 80 G~~~PS~~D~~~T~~l~~a~~ll~ 103 (126)
T 2qlc_A 80 GDVQPSNADKQVTSILKKAGDLLQ 103 (126)
T ss_dssp SCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCC
Confidence 447899999999999999999985
No 56
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=20.29 E-value=40 Score=21.84 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=15.8
Q ss_pred HhhCCCCCCCCChHHHHHHHHH
Q 026743 130 RLLGIEDSNAPTRDDLAEALEQ 151 (234)
Q Consensus 130 r~lGIED~~g~srddla~AL~e 151 (234)
++++-==++|+|+|.++.||.+
T Consensus 11 eLL~aLL~SGlsKe~LiqaL~e 32 (32)
T 1g2y_A 11 EMLAALLESGLSKEALIQALGE 32 (32)
T ss_dssp HHHHHHHHTTCCHHHHHHHHC-
T ss_pred HHHHHHHHcCCcHHHHHHHhcC
Confidence 4444444689999999999853
No 57
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.19 E-value=2e+02 Score=19.01 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=30.4
Q ss_pred ccceEEEEeecCcHH--HHHHHhhCCCC--CCCCChHHHHHHHHHhhcCCCCc
Q 026743 111 FSEVKLTIMIEDPRE--VERRRLLGIED--SNAPTRDDLAEALEQVNEGKVPK 159 (234)
Q Consensus 111 F~EVKLTImIEDPR~--~Errr~lGIED--~~g~srddla~AL~eV~eGriP~ 159 (234)
+..+++.++...... ..+-...|+.+ ...++.++|..++..+..|..+.
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEGH 131 (136)
T ss_dssp TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-----
T ss_pred CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchhh
Confidence 566777776655443 44434457654 44679999999999998887654
No 58
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=20.07 E-value=97 Score=26.95 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=24.6
Q ss_pred ChHhHHHHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHH
Q 026743 86 TPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVER 128 (234)
Q Consensus 86 sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Er 128 (234)
|++|++.+.+ +|..+.+..... ..++|.+|||.|+.+++
T Consensus 121 s~~dv~~~~~---~l~~~e~~~G~~-~~~~l~~~IET~~gv~~ 159 (339)
T 3r4i_A 121 HVHDAAEMVA---FIEATRRELGIA-QPVPVQLLVETHGALTR 159 (339)
T ss_dssp CHHHHHHHHH---HHHHHHHHTTCS-SCCCEEEEECSHHHHHT
T ss_pred CHHHHHHHHH---HHHHHHHHcCCC-CCcEEEEEeccHHHHHh
Confidence 5666555444 444343322222 46899999999999986
No 59
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=20.06 E-value=28 Score=25.93 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=1.6
Q ss_pred CCCccccCCcccc
Q 026743 20 DNQINQHHPLFAA 32 (234)
Q Consensus 20 ~~~~~~hh~~~~~ 32 (234)
|+.+||||+++.+
T Consensus 3 ~~~~~~~~~~~~~ 15 (230)
T 2iai_A 3 SSHHHHHHSSGRE 15 (230)
T ss_dssp ----------CCC
T ss_pred Cccccccccchhh
Confidence 4556777777654
Done!