Query 026743
Match_columns 234
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 21:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026743.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026743hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lmb3_ a.35.1.2 (3:) lambda C 83.3 1.7 0.00013 29.1 6.3 64 84-171 1-64 (87)
2 d1vbga1 c.1.12.2 (A:521-876) P 47.2 12 0.0009 31.1 5.3 69 85-155 194-265 (356)
3 d1rwya_ a.39.1.4 (A:) Parvalbu 30.8 6.8 0.00049 26.5 0.8 76 95-171 10-89 (109)
4 d1h75a_ c.47.1.1 (A:) Glutared 30.0 20 0.0014 22.5 3.0 36 91-133 12-47 (76)
5 d2f2ab1 a.182.1.2 (B:294-400) 28.5 34 0.0025 23.3 4.2 32 139-172 70-101 (107)
6 d2q0ta1 a.152.1.1 (A:1-257) Hy 26.4 20 0.0015 27.8 3.0 35 138-172 217-251 (257)
7 d1o17a1 a.46.2.1 (A:1-70) Anth 25.5 27 0.002 21.9 3.0 26 138-163 14-39 (70)
8 d1piwa2 c.2.1.1 (A:153-320) Ci 23.4 19 0.0014 25.0 2.1 19 139-157 149-167 (168)
9 d1z96a1 a.5.2.1 (A:295-332) UB 22.8 12 0.00088 23.3 0.8 19 190-208 5-23 (38)
10 d1r7ha_ c.47.1.1 (A:) Glutared 22.6 33 0.0024 21.0 3.0 37 91-134 12-48 (74)
11 d1pn3a_ c.87.1.5 (A:) TDP-epi- 21.7 29 0.0021 25.0 2.8 33 136-171 339-371 (391)
12 d2ppxa1 a.35.1.3 (A:30-91) Unc 20.3 90 0.0066 19.0 5.6 46 123-175 2-54 (62)
No 1
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=83.26 E-value=1.7 Score=29.13 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=50.5
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCCCchHHH
Q 026743 84 EATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVA 163 (234)
Q Consensus 84 e~sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGriP~dR~A 163 (234)
+.||+|++.-..++.+++.+|+.+.||-.++- ..+||. -.++-.+..|+..-+-..
T Consensus 1 ~~t~~~~~~~~~l~~~i~~~R~~~gltq~~lA--------------~~lgis----------~~~is~~E~g~~~~s~~~ 56 (87)
T d1lmb3_ 1 PLTQEQLEDARRLKAIYEKKKNELGLSQESVA--------------DKMGMG----------QSGVGALFNGINALNAYN 56 (87)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHH--------------HHHTSC----------HHHHHHHHTTSSCCCHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--------------HHhCcc----------HHHHHHHHhccCCCcHHH
Confidence 46899999999999999999999888866542 356653 346677889999888888
Q ss_pred HHHHHHHH
Q 026743 164 LRMLAEEM 171 (234)
Q Consensus 164 L~~L~eEm 171 (234)
|..||+=+
T Consensus 57 l~~ia~~l 64 (87)
T d1lmb3_ 57 AALLAKIL 64 (87)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 2
>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]}
Probab=47.25 E-value=12 Score=31.08 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=42.1
Q ss_pred CChHhHHHHHHH-HHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCCCCCCCC--hHHHHHHHHHhhcC
Q 026743 85 ATPEDLENIAQV-KRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPT--RDDLAEALEQVNEG 155 (234)
Q Consensus 85 ~sPeDl~~v~eI-krvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~s--rddla~AL~eV~eG 155 (234)
.++++++.+.++ .++.+.|+++.... ..+++=||||-|+.+=-=..+ .+--|.+| --||.+-+-.+.++
T Consensus 194 ~~~~E~~~~~~~~~~~~~~~~~~~~~~-~~~~iGiMiEvPsaal~~d~~-~~~~DF~SIGTNDLtQytla~DRd 265 (356)
T d1vbga1 194 GTPQELGHQVTLIRQVAEKVFANVGKT-IGYKVGTMIEIPRAALVADEI-AEQAEFFSFGTNDLTQMTFGYSRD 265 (356)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEEEEECSHHHHHTHHHH-TTTCSEEEECHHHHHHHHHTCCTT
T ss_pred hhHHHHHHHHHHHHHhHHHHHHhcccc-cCceeeeeccChHHHHHHHHH-hheEEEEEecchHHHHHHHHhhhh
Confidence 467778777764 34555665554433 368999999999987543222 12234433 56777776665544
No 3
>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}
Probab=30.77 E-value=6.8 Score=26.52 Aligned_cols=76 Identities=9% Similarity=0.157 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCCCCCCC---CChHHHHHHHHHhhcC-CCCchHHHHHHHHHH
Q 026743 95 QVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNA---PTRDDLAEALEQVNEG-KVPKNRVALRMLAEE 170 (234)
Q Consensus 95 eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g---~srddla~AL~eV~eG-riP~dR~AL~~L~eE 170 (234)
+|..++.....+--++|.|..-.+.+-.-...+-|++..+=|.+| ++++|+..+|..+..+ +...+.. +..+.++
T Consensus 10 ~i~~~~~~~~~~~~i~f~eF~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~~~~~e-~~~~~~~ 88 (109)
T d1rwya_ 10 DIKKAIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKE-TKTLMAA 88 (109)
T ss_dssp HHHHHHHTTCSTTCCCHHHHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHH-HHHHHHH
T ss_pred HHHHHHHhcccCCCcCHHHHHHHHccccCCHHHHHHHhhcccCCCCCcCcHHHHHHHHHHhccccccCCHHH-HHHHHHH
Confidence 344444444444444555542222222223344455666666666 9999999999987664 4344433 4444444
Q ss_pred H
Q 026743 171 M 171 (234)
Q Consensus 171 m 171 (234)
+
T Consensus 89 ~ 89 (109)
T d1rwya_ 89 G 89 (109)
T ss_dssp H
T ss_pred h
Confidence 3
No 4
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=30.00 E-value=20 Score=22.46 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhC
Q 026743 91 ENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLG 133 (234)
Q Consensus 91 ~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lG 133 (234)
-+|..+|++|+ ++.+.|.|+.++ +||...+.-+.+|
T Consensus 12 ~~C~~ak~~L~----~~~i~y~~~~i~---~~~~~~~~~~~~g 47 (76)
T d1h75a_ 12 VQCHATKRAME----NRGFDFEMINVD---RVPEAAEALRAQG 47 (76)
T ss_dssp HHHHHHHHHHH----HTTCCCEEEETT---TCHHHHHHHHHTT
T ss_pred ccHHHHHHHHH----hcCceeEEEeec---CCHHHHHHHHhcC
Confidence 47888888774 467899998765 6777666544455
No 5
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=28.55 E-value=34 Score=23.27 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Q 026743 139 APTRDDLAEALEQVNEGKVPKNRVALRMLAEEMV 172 (234)
Q Consensus 139 g~srddla~AL~eV~eGriP~dR~AL~~L~eEm~ 172 (234)
.+|.+.+++-+..|.+|+|-.. .| +.+.++|.
T Consensus 70 ~i~~~~la~Li~lv~~g~Is~~-~a-K~vl~~~~ 101 (107)
T d2f2ab1 70 KLTPENLAGMIKLIEDGTMSSK-IA-KKVFPELA 101 (107)
T ss_dssp SCCHHHHHHHHHHHTTSSSCHH-HH-HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCccHH-HH-HHHHHHHH
Confidence 4679999999999999999654 33 66777775
No 6
>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006 {Burkholderia xenovorans [TaxId: 36873]}
Probab=26.37 E-value=20 Score=27.85 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Q 026743 138 NAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMV 172 (234)
Q Consensus 138 ~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm~ 172 (234)
-|.|++|+.++|..+----+|.=..+++.|-++|.
T Consensus 217 ~G~t~eEi~eal~~~~~~G~~~~~~~~~~l~~~l~ 251 (257)
T d2q0ta1 217 YGATAEELMELLEIVSVTGIHGAELGAPLLEAALK 251 (257)
T ss_dssp TTCCHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 58999999999988666678888899999988875
No 7
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=25.46 E-value=27 Score=21.89 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCCChHHHHHHHHHhhcCCCCchHHH
Q 026743 138 NAPTRDDLAEALEQVNEGKVPKNRVA 163 (234)
Q Consensus 138 ~g~srddla~AL~eV~eGriP~dR~A 163 (234)
...|++|+..+...|-.|+++..-+|
T Consensus 14 ~~Ls~~e~~~~~~~i~~g~~s~~qia 39 (70)
T d1o17a1 14 SDLEINEAEELAKAIIRGEVPEILVS 39 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHH
Confidence 56899999999999999999988765
No 8
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.39 E-value=19 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=17.0
Q ss_pred CCChHHHHHHHHHhhcCCC
Q 026743 139 APTRDDLAEALEQVNEGKV 157 (234)
Q Consensus 139 g~srddla~AL~eV~eGri 157 (234)
.-|++|+.++|+.|.+|+|
T Consensus 149 ~g~~~~~~e~l~li~~gkI 167 (168)
T d1piwa2 149 LGSIKELNQLLKLVSEKDI 167 (168)
T ss_dssp CCCHHHHHHHHHHHHHTTC
T ss_pred eCCHHHHHHHHHHHHhCCC
Confidence 3489999999999999997
No 9
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=22.82 E-value=12 Score=23.28 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=15.5
Q ss_pred chhhcccCCCCHHHHHhhh
Q 026743 190 LYAKVTDTGIDPEMAAKRL 208 (234)
Q Consensus 190 ~YakatdTGidp~~AAkRl 208 (234)
-.|.....|.||.+||+.|
T Consensus 5 kiaqlvsmgfdpleaaqal 23 (38)
T d1z96a1 5 KIAQLVSMGFDPLEAAQAL 23 (38)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 3466677899999999987
No 10
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=22.61 E-value=33 Score=20.98 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhccccccceEEEEeecCcHHHHHHHhhCC
Q 026743 91 ENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGI 134 (234)
Q Consensus 91 ~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGI 134 (234)
-||..+|++|+ ++.+.|.++.+. +||...+--+.+|.
T Consensus 12 ~~C~~ak~~L~----~~~i~~~~~~i~---~~~~~~~~~~~~g~ 48 (74)
T d1r7ha_ 12 VQCTATKKALD----RAGLAYNTVDIS---LDDEARDYVMALGY 48 (74)
T ss_dssp HHHHHHHHHHH----HTTCCCEEEETT---TCHHHHHHHHHTTC
T ss_pred hhHHHHHHHHH----HcCCceEEEEcc---CCHHHHHHHHHhCC
Confidence 37888888775 467899888764 56666555455554
No 11
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}
Probab=21.69 E-value=29 Score=25.04 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=23.7
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026743 136 DSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (234)
Q Consensus 136 D~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (234)
+...+|.++|++++.+|-+ |.-|...+.+++.+
T Consensus 339 ~~~~~~~~~l~~~i~~~l~---~~~r~~a~~~a~~~ 371 (391)
T d1pn3a_ 339 DGPVPTIDSLSAALDTALA---PEIRARATTVADTI 371 (391)
T ss_dssp CCSSCCHHHHHHHHHHHTS---TTHHHHHHHHGGGS
T ss_pred CcCCCCHHHHHHHHHHHhC---HHHHHHHHHHHHHH
Confidence 4466899999999999874 45565555555544
No 12
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.34 E-value=90 Score=18.96 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=30.6
Q ss_pred cHHHHHHHhhCCCCCCCCChHHHHHH-------HHHhhcCCCCchHHHHHHHHHHHhcCC
Q 026743 123 PREVERRRLLGIEDSNAPTRDDLAEA-------LEQVNEGKVPKNRVALRMLAEEMVQWP 175 (234)
Q Consensus 123 PR~~Errr~lGIED~~g~srddla~A-------L~eV~eGriP~dR~AL~~L~eEm~~WP 175 (234)
||..+-|..+| .|..++|+. +...+.|+..-+..++..| .-+...|
T Consensus 2 p~ik~~R~~~g------ltQ~elA~~lGvs~~tvs~~E~G~~~P~~~~~~ll-~~l~~~P 54 (62)
T d2ppxa1 2 PRIKIIRRALK------LTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYL-KIIAVDP 54 (62)
T ss_dssp CHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHH-HHHHHCH
T ss_pred hHHHHHHHHcC------CCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHH-HHHhcCH
Confidence 66777777765 488888875 4567888776666665444 4455544
Done!