BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026745
(234 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255550912|ref|XP_002516504.1| conserved hypothetical protein [Ricinus communis]
gi|223544324|gb|EEF45845.1| conserved hypothetical protein [Ricinus communis]
Length = 311
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/220 (83%), Positives = 203/220 (92%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VKKGGP+P SNTVLAA+LEKAKELDVPKDI+ERNIKRAS+KGQEA+IEK+YEVY
Sbjct: 91 KEVVSAVKKGGPSPISNTVLAALLEKAKELDVPKDILERNIKRASDKGQEAYIEKIYEVY 150
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGVSIVVEVLTDKI RSVAAVREVVKD GGKMADPGSVMFKF+R RVVNIK T+ADKD
Sbjct: 151 GFGGVSIVVEVLTDKINRSVAAVREVVKDYGGKMADPGSVMFKFKRVRVVNIKVTEADKD 210
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
QLL IALDAGAEDVIEPP+ EDD DED++E YYKVVS+S+NY +I +KLRE GI FETDN
Sbjct: 211 QLLAIALDAGAEDVIEPPIYEDDADEDKSESYYKVVSSSENYMEILSKLREEGIDFETDN 270
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
GSELLPITTIEVDDEAM+LNKELI+KLLELDDVDAVYTDQ
Sbjct: 271 GSELLPITTIEVDDEAMDLNKELISKLLELDDVDAVYTDQ 310
>gi|225429934|ref|XP_002283851.1| PREDICTED: UPF0082 protein At2g25830 [Vitis vinifera]
gi|296081846|emb|CBI20851.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 174/220 (79%), Positives = 199/220 (90%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK+ GPNP SNT+LAAVLEKAKELDVPK+IVERNIKRASEKGQEA+IEK YEVY
Sbjct: 99 KEVVSAVKRDGPNPKSNTILAAVLEKAKELDVPKEIVERNIKRASEKGQEAYIEKFYEVY 158
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGVS+++EVLTDKI RSVAAVREV+KDCGGKMADPGSVMFKFRRARVVN+K ++ADKD
Sbjct: 159 GFGGVSMIIEVLTDKINRSVAAVREVMKDCGGKMADPGSVMFKFRRARVVNVKASEADKD 218
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
QLL IALD GAEDVIEPPV EDD +EDR+E YYK+V++++NY+ I KLRE GI FETDN
Sbjct: 219 QLLTIALDTGAEDVIEPPVYEDDAEEDRSESYYKIVTSAENYSAILEKLREEGINFETDN 278
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
G E+LPITTIEVDDEAM+LNKEL++KLLELDDVDAVY DQ
Sbjct: 279 GFEMLPITTIEVDDEAMDLNKELMSKLLELDDVDAVYMDQ 318
>gi|224089014|ref|XP_002308602.1| predicted protein [Populus trichocarpa]
gi|222854578|gb|EEE92125.1| predicted protein [Populus trichocarpa]
Length = 292
Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/220 (80%), Positives = 194/220 (88%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VKKGGPNP SNT LAA+++K KELDVPK+I+ERNIKRASEKGQEAFIEK+YEVY
Sbjct: 72 KEVVSAVKKGGPNPESNTALAALIDKFKELDVPKEILERNIKRASEKGQEAFIEKIYEVY 131
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G GGVSIVVEV TDKI RSVA +REVVKD GGKMADPGSV+FKFRRARVVNIK TDAD+D
Sbjct: 132 GLGGVSIVVEVSTDKIKRSVAVIREVVKDYGGKMADPGSVLFKFRRARVVNIKVTDADRD 191
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
QLL IALDAGAEDVIEPP EDD+DEDR+E YYKVVS ++NY I +KLR GI FETDN
Sbjct: 192 QLLGIALDAGAEDVIEPPTYEDDSDEDRSESYYKVVSPAENYAAILSKLRNEGISFETDN 251
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
GSELLPIT IEVDDEA+ELNK L++KLLELDDVDAVYTDQ
Sbjct: 252 GSELLPITPIEVDDEAVELNKVLMSKLLELDDVDAVYTDQ 291
>gi|297825653|ref|XP_002880709.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp.
lyrata]
gi|297326548|gb|EFH56968.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp.
lyrata]
Length = 327
Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 177/214 (82%), Positives = 195/214 (91%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGGVS
Sbjct: 113 VKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGGVS 172
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKFRR RVVNIK T+ADKDQLL+IA
Sbjct: 173 MVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFRRVRVVNIKVTEADKDQLLNIA 232
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAEDVIEPP EDDTDEDR ERYYK+V++S+NY+ I +KLR+ G+ FE DNGSELLP
Sbjct: 233 LDAGAEDVIEPPTYEDDTDEDREERYYKIVTSSENYSTILSKLRDEGVNFEPDNGSELLP 292
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 293 LTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 326
>gi|356515613|ref|XP_003526493.1| PREDICTED: UPF0082 protein At2g25830-like isoform 2 [Glycine max]
Length = 306
Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 172/222 (77%), Positives = 194/222 (87%), Gaps = 8/222 (3%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGPN TSN+VLAAVLEKAKELDVPKDIVERN+KRASEKGQEA+IEKVYEVYGYGGVS
Sbjct: 84 VKRGGPNVTSNSVLAAVLEKAKELDVPKDIVERNMKRASEKGQEAYIEKVYEVYGYGGVS 143
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEV TDKI RSVA +REV+KD GGKMAD GSV FKF+R RVVNIK T+ADKDQLL IA
Sbjct: 144 MVVEVSTDKIHRSVAKIREVIKDYGGKMADSGSVTFKFKRVRVVNIKATNADKDQLLAIA 203
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAE--------RYYKVVSTSDNYTDITTKLREAGIPFET 191
LDAGAEDVI+PP EDDT+EDR++ RYYK+V +S+NY+ I +KLRE GI FE
Sbjct: 204 LDAGAEDVIDPPTYEDDTEEDRSDKFILFHFVRYYKIVGSSENYSSILSKLREEGIDFEP 263
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
DNGSELLP T +EVDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 264 DNGSELLPNTPVEVDDEAMDLNKELMSKLLELDDVDAVYTDQ 305
>gi|356515611|ref|XP_003526492.1| PREDICTED: UPF0082 protein At2g25830-like isoform 1 [Glycine max]
Length = 295
Score = 338 bits (868), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 171/214 (79%), Positives = 191/214 (89%), Gaps = 3/214 (1%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGPN TSN+VLAAVLEKAKELDVPKDIVERN+KRASEKGQEA+IEKVYEVYGYGGVS
Sbjct: 84 VKRGGPNVTSNSVLAAVLEKAKELDVPKDIVERNMKRASEKGQEAYIEKVYEVYGYGGVS 143
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEV TDKI RSVA +REV+KD GGKMAD GSV FKF+R RVVNIK T+ADKDQLL IA
Sbjct: 144 MVVEVSTDKIHRSVAKIREVIKDYGGKMADSGSVTFKFKRVRVVNIKATNADKDQLLAIA 203
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAEDVI+PP EDDT+ED RYYK+V +S+NY+ I +KLRE GI FE DNGSELLP
Sbjct: 204 LDAGAEDVIDPPTYEDDTEED---RYYKIVGSSENYSSILSKLREEGIDFEPDNGSELLP 260
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
T +EVDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 261 NTPVEVDDEAMDLNKELMSKLLELDDVDAVYTDQ 294
>gi|18400953|ref|NP_565610.1| YebC-related protein [Arabidopsis thaliana]
gi|22096384|sp|O82314.2|U082_ARATH RecName: Full=Probable transcriptional regulatory protein At2g25830
gi|20197365|gb|AAC42247.2| expressed protein [Arabidopsis thaliana]
gi|330252663|gb|AEC07757.1| YebC-related protein [Arabidopsis thaliana]
Length = 331
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/214 (81%), Positives = 194/214 (90%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGGVS
Sbjct: 117 VKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGGVS 176
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL IA
Sbjct: 177 MVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLIIA 236
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAEDVIEPP EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSELLP
Sbjct: 237 LDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSELLP 296
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 297 LTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 330
>gi|15810383|gb|AAL07079.1| unknown protein [Arabidopsis thaliana]
gi|21281203|gb|AAM45134.1| unknown protein [Arabidopsis thaliana]
Length = 330
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/214 (81%), Positives = 194/214 (90%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGGVS
Sbjct: 116 VKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGGVS 175
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL IA
Sbjct: 176 MVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLIIA 235
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAEDVIEPP EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSELLP
Sbjct: 236 LDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSELLP 295
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 296 LTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 329
>gi|357466655|ref|XP_003603612.1| hypothetical protein MTR_3g109620 [Medicago truncatula]
gi|355492660|gb|AES73863.1| hypothetical protein MTR_3g109620 [Medicago truncatula]
Length = 346
Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/239 (71%), Positives = 194/239 (81%), Gaps = 25/239 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYE-------- 71
VKKGGPN TSN+ LAAVLEK KELDVPKDIVERNIK+A+EKGQE +IEK+YE
Sbjct: 107 VKKGGPNVTSNSALAAVLEKVKELDVPKDIVERNIKKATEKGQEDYIEKIYEGNQLCLVN 166
Query: 72 -----------------VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
VYGYGGVS+VVEV TDKITRSVA +REV+KD GGKMAD GSV+
Sbjct: 167 VLGYKIGYGTGPATPEWVYGYGGVSMVVEVSTDKITRSVAKIREVIKDYGGKMADSGSVL 226
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
FKFRRARVV+IK T+ADKD LL IALDAGAEDVI+PP EDDT+EDR+ERYYK+V +S+N
Sbjct: 227 FKFRRARVVSIKVTNADKDHLLGIALDAGAEDVIDPPTYEDDTEEDRSERYYKIVGSSEN 286
Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
Y+ I +KLRE GI FE DNGSELLP TTIEVDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 287 YSSILSKLREEGIEFEPDNGSELLPNTTIEVDDEAMDLNKELMSKLLELDDVDAVYTDQ 345
>gi|449461317|ref|XP_004148388.1| PREDICTED: probable transcriptional regulatory protein
At2g25830-like [Cucumis sativus]
Length = 320
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 160/214 (74%), Positives = 190/214 (88%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+GG NPTSN +L +LEK KELD+PK+I +RNIKRASEKGQEA+IEK YEVYGYGG S
Sbjct: 106 CKRGGTNPTSNPLLTTLLEKIKELDIPKEIFDRNIKRASEKGQEAYIEKTYEVYGYGGAS 165
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEV TDK+ RSVAAVREV+KD GGKMAD GSVMFKFRRARVVN+K ++ DKDQLL+I+
Sbjct: 166 MVVEVSTDKVNRSVAAVREVLKDYGGKMADSGSVMFKFRRARVVNVKASNVDKDQLLNIS 225
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAEDVIEPP EDDT+ED++ERYYK+V++++NY+ I +KLRE I FETD GSELLP
Sbjct: 226 LDAGAEDVIEPPEYEDDTEEDKSERYYKIVTSTENYSGILSKLREENIKFETDGGSELLP 285
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+++IEVDDEAM+LNKEL+ KLLELDDVDAVYTDQ
Sbjct: 286 MSSIEVDDEAMDLNKELMDKLLELDDVDAVYTDQ 319
>gi|388519457|gb|AFK47790.1| unknown [Lotus japonicus]
Length = 312
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/214 (79%), Positives = 191/214 (89%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VKKGGPN +N+ LAAVLEKAKELDVPKDI+ERNIKRASEKGQEA+IEK YEVYGYGGVS
Sbjct: 98 VKKGGPNVATNSDLAAVLEKAKELDVPKDIIERNIKRASEKGQEAYIEKTYEVYGYGGVS 157
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
IVVEV TDKI RSVA +REVV+D GGKMADPGSVMFKFRRARVVNIK T+ADKDQLL IA
Sbjct: 158 IVVEVSTDKINRSVAKIREVVRDYGGKMADPGSVMFKFRRARVVNIKVTNADKDQLLAIA 217
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAEDVI+PP E+DT+ED +ERYYK+V +S+NY+ I +KLRE GI F D+GSELLP
Sbjct: 218 LDAGAEDVIDPPTYEEDTEEDESERYYKIVGSSENYSSILSKLREEGIDFVPDSGSELLP 277
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
TIEVDDEAM+LNKEL++ LLELDDVDAVYTDQ
Sbjct: 278 NATIEVDDEAMDLNKELMSNLLELDDVDAVYTDQ 311
>gi|357132928|ref|XP_003568080.1| PREDICTED: UPF0082 protein At2g25830-like isoform 1 [Brachypodium
distachyon]
Length = 307
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/214 (71%), Positives = 185/214 (86%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
+ KGGPNP+SNT LAA+LEK +ELDVPK++VERN+KRASEKGQ+ + EKVYEVYG+GGV
Sbjct: 93 INKGGPNPSSNTALAAILEKVRELDVPKEVVERNMKRASEKGQDTYTEKVYEVYGFGGVG 152
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKITRS+A +R VVKDC K+ADPGSV F+FR+ RVVNIK TDADKD+LL +A
Sbjct: 153 MVVEVLTDKITRSIADIRNVVKDCAAKLADPGSVTFRFRQVRVVNIKVTDADKDELLSVA 212
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGA+DVIEP + DD E+ ER+YK+V+TS+NY + +KL+E GI FETDNG ELLP
Sbjct: 213 LDAGADDVIEPNFDYDDDSEEVTERFYKIVTTSENYPVVLSKLQEEGIKFETDNGYELLP 272
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ IEVDDEAMELNK+L++KLLELDDVDAVYTDQ
Sbjct: 273 LNPIEVDDEAMELNKDLVSKLLELDDVDAVYTDQ 306
>gi|357132930|ref|XP_003568081.1| PREDICTED: UPF0082 protein At2g25830-like isoform 2 [Brachypodium
distachyon]
Length = 305
Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 153/214 (71%), Positives = 185/214 (86%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
+ KGGPNP+SNT LAA+LEK +ELDVPK++VERN+KRASEKGQ+ + EKVYEVYG+GGV
Sbjct: 91 INKGGPNPSSNTALAAILEKVRELDVPKEVVERNMKRASEKGQDTYTEKVYEVYGFGGVG 150
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKITRS+A +R VVKDC K+ADPGSV F+FR+ RVVNIK TDADKD+LL +A
Sbjct: 151 MVVEVLTDKITRSIADIRNVVKDCAAKLADPGSVTFRFRQVRVVNIKVTDADKDELLSVA 210
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGA+DVIEP + DD E+ ER+YK+V+TS+NY + +KL+E GI FETDNG ELLP
Sbjct: 211 LDAGADDVIEPNFDYDDDSEEVTERFYKIVTTSENYPVVLSKLQEEGIKFETDNGYELLP 270
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ IEVDDEAMELNK+L++KLLELDDVDAVYTDQ
Sbjct: 271 LNPIEVDDEAMELNKDLVSKLLELDDVDAVYTDQ 304
>gi|218197116|gb|EEC79543.1| hypothetical protein OsI_20657 [Oryza sativa Indica Group]
Length = 317
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/223 (70%), Positives = 190/223 (85%), Gaps = 9/223 (4%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
+KKGGP+P+SNT LAA+LEKA+ELD+PK+I+ERNIKRASEKGQ+ + EKVYEVYG+GGV
Sbjct: 94 IKKGGPSPSSNTTLAAILEKARELDIPKEILERNIKRASEKGQDTYTEKVYEVYGFGGVG 153
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKITRS+A +R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +A
Sbjct: 154 MVVEVLTDKITRSIADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVA 213
Query: 140 LDAGAEDVIEPPV---------NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
LDAGA+DVIEP +DD+ ED +ER+YK+V+TS+NY + +KL+E G+ FE
Sbjct: 214 LDAGADDVIEPNFDDDDDDDDDYDDDSSEDVSERFYKIVTTSENYPVVLSKLQEEGLKFE 273
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
TDNG ELLP+ IEVDDEAMELNK L++KLLELDDVDAVYTDQ
Sbjct: 274 TDNGYELLPLNPIEVDDEAMELNKVLVSKLLELDDVDAVYTDQ 316
>gi|115464935|ref|NP_001056067.1| Os05g0519800 [Oryza sativa Japonica Group]
gi|50080324|gb|AAT69658.1| unknown protein [Oryza sativa Japonica Group]
gi|52353700|gb|AAU44266.1| unknown protein [Oryza sativa Japonica Group]
gi|113579618|dbj|BAF17981.1| Os05g0519800 [Oryza sativa Japonica Group]
gi|215697437|dbj|BAG91431.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222632259|gb|EEE64391.1| hypothetical protein OsJ_19233 [Oryza sativa Japonica Group]
Length = 317
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/223 (70%), Positives = 190/223 (85%), Gaps = 9/223 (4%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
+KKGGP+P+SNT LAA+LEKA+ELD+PK+I+ERNIKRASEKGQ+ + EKVYEVYG+GGV
Sbjct: 94 IKKGGPSPSSNTTLAAILEKARELDIPKEILERNIKRASEKGQDTYTEKVYEVYGFGGVG 153
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKITRS+A +R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +A
Sbjct: 154 MVVEVLTDKITRSIADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVA 213
Query: 140 LDAGAEDVIEPPV---------NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
LDAGA+DVIEP +DD+ ED +ER+YK+V+TS+NY + +KL+E G+ FE
Sbjct: 214 LDAGADDVIEPNFDDDDDDDDDYDDDSSEDVSERFYKIVTTSENYPVVLSKLQEEGLKFE 273
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
TDNG ELLP+ IEVDDEAMELNK L++KLLELDDVDAVYTDQ
Sbjct: 274 TDNGYELLPLNPIEVDDEAMELNKVLVSKLLELDDVDAVYTDQ 316
>gi|242088521|ref|XP_002440093.1| hypothetical protein SORBIDRAFT_09g025910 [Sorghum bicolor]
gi|241945378|gb|EES18523.1| hypothetical protein SORBIDRAFT_09g025910 [Sorghum bicolor]
Length = 303
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 159/214 (74%), Positives = 191/214 (89%), Gaps = 1/214 (0%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
+KKGGPNP+SNT LAA+LEKA+ELDVP +I+ERNIKRASEKGQ+ + EKVYEVYG+GGV
Sbjct: 90 IKKGGPNPSSNTTLAAILEKARELDVPNEILERNIKRASEKGQDTYTEKVYEVYGFGGVG 149
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKITRSVA +R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL IA
Sbjct: 150 MVVEVLTDKITRSVADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTIA 209
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGA+DV+EP ++DD++E+ AER+YK+V+TS+NY + +KL+E G+ FETDNG ELLP
Sbjct: 210 LDAGADDVLEPNFDDDDSEEE-AERFYKIVTTSENYPVVLSKLQEEGLKFETDNGYELLP 268
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ IEVDDEAMELNKEL++KLLELDDVDAVY DQ
Sbjct: 269 LNPIEVDDEAMELNKELVSKLLELDDVDAVYADQ 302
>gi|326518252|dbj|BAK07378.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 308
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 187/215 (86%), Gaps = 1/215 (0%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
+KKGGP+P+SNT LAA+LEK +ELDVPK++VERNIKRASEKGQ+ + EK YEVYG+GGV
Sbjct: 93 IKKGGPSPSSNTALAALLEKVRELDVPKEVVERNIKRASEKGQDTYTEKNYEVYGFGGVG 152
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKITRS+A +R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +A
Sbjct: 153 MVVEVLTDKITRSIADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLSVA 212
Query: 140 LDAGAEDVIEPPVNEDDTDEDRA-ERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGA+DVIEP +++D E+ ER+YK+V+TS+NY + +KL+E G+ FETDNG ELL
Sbjct: 213 LDAGADDVIEPNFDDEDDSEEEVLERFYKIVTTSENYPVVLSKLQEEGLKFETDNGYELL 272
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
P+ IEVDDEAMELNK+L+ KLLELDDVDAVYTDQ
Sbjct: 273 PLNPIEVDDEAMELNKDLVCKLLELDDVDAVYTDQ 307
>gi|356510029|ref|XP_003523743.1| PREDICTED: UPF0082 protein At2g25830-like [Glycine max]
Length = 288
Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/214 (72%), Positives = 184/214 (85%), Gaps = 8/214 (3%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGPN TS++VLAAVL KAKELD+PKDIV+RNIKRA+EKGQEA+IEK Y+VYGYGGVS
Sbjct: 82 VKRGGPNVTSDSVLAAVLGKAKELDLPKDIVDRNIKRANEKGQEAYIEKAYKVYGYGGVS 141
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEV TDK+ RSV +REV++D GGKMAD GSV FKF+R R+VNIK T+ADKDQLL IA
Sbjct: 142 MVVEVSTDKVHRSVTKIREVIRDYGGKMADSGSVTFKFKRVRLVNIKATNADKDQLLAIA 201
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAEDVIEPP EDDT+EDR+ERYYK+V +S+N++ I +KLR DN SELLP
Sbjct: 202 LDAGAEDVIEPPTYEDDTEEDRSERYYKIVGSSENFSFIPSKLR--------DNSSELLP 253
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
T + VDDEAM+LNKEL++KLLELDDVDAVYTDQ
Sbjct: 254 NTLVVVDDEAMDLNKELMSKLLELDDVDAVYTDQ 287
>gi|223942609|gb|ACN25388.1| unknown [Zea mays]
gi|413946194|gb|AFW78843.1| hypothetical protein ZEAMMB73_559026 [Zea mays]
Length = 306
Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 155/214 (72%), Positives = 192/214 (89%), Gaps = 1/214 (0%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
+KKGGPNP+SNT L+A+LEKA+ELDVP++I+ERNIKRASEKGQ+ + EKVYEVYG+GGV
Sbjct: 93 IKKGGPNPSSNTTLSAILEKARELDVPREILERNIKRASEKGQDTYTEKVYEVYGFGGVG 152
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKITRSVA +R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +A
Sbjct: 153 MVVEVLTDKITRSVADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVA 212
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGA+DV+EP ++DD++E+ AER+YK+V+TS+NY + +KL+E G+ FETDNG EL+P
Sbjct: 213 LDAGADDVLEPNFDDDDSEEE-AERFYKIVTTSENYPVLLSKLQEEGLKFETDNGYELVP 271
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ IEVDDEA+ELNKEL++ LLELDDVDAVYTDQ
Sbjct: 272 LNPIEVDDEAVELNKELVSNLLELDDVDAVYTDQ 305
>gi|449507300|ref|XP_004162992.1| PREDICTED: probable transcriptional regulatory protein
At2g25830-like, partial [Cucumis sativus]
Length = 362
Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 134/186 (72%), Positives = 162/186 (87%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+GG NPTSN +L +LEK KELD+PK+I +RNIKRASEKGQEA+IEK YEVYGYGG S
Sbjct: 106 CKRGGTNPTSNPLLTTLLEKIKELDIPKEIFDRNIKRASEKGQEAYIEKTYEVYGYGGAS 165
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEV TDK+ RSVAAVREV+KD GGKMAD GSVMFKFRRARVVN+K ++ DKDQLL+I+
Sbjct: 166 MVVEVSTDKVNRSVAAVREVLKDYGGKMADSGSVMFKFRRARVVNVKASNVDKDQLLNIS 225
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAEDVIEPP EDDT+ED++ERYYK+V++++NY+ I +KLRE I FETD GSELLP
Sbjct: 226 LDAGAEDVIEPPEYEDDTEEDKSERYYKIVTSTENYSGILSKLREENIKFETDGGSELLP 285
Query: 200 ITTIEV 205
+++IE
Sbjct: 286 MSSIEF 291
>gi|302802993|ref|XP_002983250.1| hypothetical protein SELMODRAFT_422633 [Selaginella moellendorffii]
gi|300148935|gb|EFJ15592.1| hypothetical protein SELMODRAFT_422633 [Selaginella moellendorffii]
Length = 268
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + V++GG N SN LAAVL++A+EL+V K+I+ERN+K+A + ++F E +YEV+
Sbjct: 49 KEVAKAVREGGANTASNLQLAAVLQRARELNVSKEIIERNMKKAKDTENQSFSEILYEVF 108
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK-FTDADK 132
G+GGV IVVEVLTD RS +REVVK C KMA GSV+F F+RA V+ +K D
Sbjct: 109 GFGGVGIVVEVLTDNPNRSACQIREVVKKCRAKMAGSGSVLFDFKRAGVLCVKAAADVSA 168
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
D+L A DAGAEDVIEPP +E+ + ED R +KV++ +++Y + +KL EAG P D
Sbjct: 169 DELFVAATDAGAEDVIEPPEDEEASLED---RVFKVITKAEDYIPVKSKLVEAGFPISVD 225
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+G EL+ +EVDDEAMELNK L+ KLLELDDVDAVY+ Q
Sbjct: 226 SGLELVSNAQVEVDDEAMELNKGLMEKLLELDDVDAVYSSQ 266
>gi|302804755|ref|XP_002984129.1| hypothetical protein SELMODRAFT_156357 [Selaginella moellendorffii]
gi|300147978|gb|EFJ14639.1| hypothetical protein SELMODRAFT_156357 [Selaginella moellendorffii]
Length = 255
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 160/223 (71%), Gaps = 3/223 (1%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + V+ GGPNP SN VLA++L++A+E + PK+ +++++++A++K Q+ + E +YE Y
Sbjct: 28 KQIAKAVRDGGPNPASNLVLASLLQQARECNYPKEHIDKHLRKATDKDQQDYTECIYEAY 87
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV +V+E LTD R+ A++R+VVK G KMAD GSVMF F+RA V+ ++ D D
Sbjct: 88 GFGGVGLVMEALTDNPNRAFASIRDVVKKSGAKMADSGSVMFGFKRAGVIAVRPGKVDAD 147
Query: 134 QLLDIALDAGAEDVIEP-PVNEDDTDEDRA-ERYYKVVSTSDNYTDITTKLREAGIPFET 191
LL A+DAGAED+I P P +E+DTDE A ER+YKVV + + + TKL EAGI +
Sbjct: 148 HLLLAAMDAGAEDLIGPEPCHEEDTDESAAEERHYKVVMPVEEFGAVKTKLSEAGISMDL 207
Query: 192 D-NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ +G E LP+ +EVDDEAMELN+ L LLEL+DVDAVY+ Q
Sbjct: 208 ESSGLEFLPVAPVEVDDEAMELNRALTDMLLELEDVDAVYSTQ 250
>gi|302755764|ref|XP_002961306.1| hypothetical protein SELMODRAFT_437703 [Selaginella moellendorffii]
gi|300172245|gb|EFJ38845.1| hypothetical protein SELMODRAFT_437703 [Selaginella moellendorffii]
Length = 268
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + V++GG N SN LAAVL++A+EL+V K+I+ERN+K+A + ++F E +YEV+
Sbjct: 49 KEVAKAVREGGANTASNLQLAAVLQRARELNVSKEIIERNMKKAKDTENQSFSEILYEVF 108
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK-FTDADK 132
GYGGV IVVEVLTD RS +REVVK C KMA GSV+F F+RA V+ +K D
Sbjct: 109 GYGGVGIVVEVLTDNPNRSSCQIREVVKKCRAKMAGSGSVLFDFKRAGVLYVKAAADVSA 168
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
D+L A DAGAEDVIEPP +E+ + ED R +KV++ +++Y + +KL EAG P D
Sbjct: 169 DELFVAATDAGAEDVIEPPEDEEASLED---RVFKVITKAEDYIPVKSKLVEAGFPVGVD 225
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+G EL+ +EVDDEAMELNK L+ KLLELDDVDAVY+ Q
Sbjct: 226 SGLELVSNAQVEVDDEAMELNKGLMEKLLELDDVDAVYSSQ 266
>gi|302780884|ref|XP_002972216.1| hypothetical protein SELMODRAFT_172623 [Selaginella moellendorffii]
gi|300159683|gb|EFJ26302.1| hypothetical protein SELMODRAFT_172623 [Selaginella moellendorffii]
Length = 255
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 159/223 (71%), Gaps = 3/223 (1%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + V+ GGPNP SN VLA++L++A+E + PK+ +++++++A++K Q+ + E +YE Y
Sbjct: 28 KQIAKAVRDGGPNPASNLVLASLLQQARECNYPKEHIDKHLRKATDKDQQDYTECIYEAY 87
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV +V+E LTD R+ A++R+VVK G KMAD GSVMF F+RA V+ ++ D D
Sbjct: 88 GFGGVGLVMEALTDNPNRAFASIRDVVKKSGAKMADSGSVMFGFKRAGVIAVRPDKVDAD 147
Query: 134 QLLDIALDAGAEDVIEP-PVNEDDTDEDRA-ERYYKVVSTSDNYTDITTKLREAGIPFET 191
LL A+DAGAED+I P P +E+DTD A ER+YKVV + + + TKL EAGI +
Sbjct: 148 HLLLAAMDAGAEDLIAPEPCHEEDTDGAAAEERHYKVVMPVEEFGAVKTKLSEAGISMDL 207
Query: 192 D-NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ +G E LP+ +EVDDEAMELN+ L LLEL+DVDAVY+ Q
Sbjct: 208 ESSGLEFLPVAPVEVDDEAMELNRALTDMLLELEDVDAVYSTQ 250
>gi|302783743|ref|XP_002973644.1| hypothetical protein SELMODRAFT_99602 [Selaginella moellendorffii]
gi|300158682|gb|EFJ25304.1| hypothetical protein SELMODRAFT_99602 [Selaginella moellendorffii]
Length = 290
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 157/225 (69%), Gaps = 6/225 (2%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + ++GG N +SN LAA+++KAKEL V KD++ERNIK+A +K Q+ F E YE Y
Sbjct: 65 KEIAQAAREGGTNLSSNLTLAALVQKAKELHVSKDLIERNIKKAKDKDQQDFTEITYEAY 124
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV IVVEVLTD R+ + VR+V+K KMA GSV+F F+RA VV +K + D +
Sbjct: 125 GFGGVGIVVEVLTDNTNRASSFVRDVIKKSHAKMAASGSVLFNFKRAGVVAVK-GNVDSE 183
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAE----RYYKVVSTSDNYTDITTKLREAGIPF 189
LL +A++ GAEDV+EP + +D++ E++ RY+KV++ D++ + L++AG
Sbjct: 184 SLLAVAMETGAEDVVEPELEDDESPEEKKNLVDVRYFKVITAMDDFGRVKAGLKDAGFSI 243
Query: 190 ETDN-GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ DN G EL+P +EVDDEAME+N+ LI KLLEL+DVDAVY+ Q
Sbjct: 244 DMDNSGLELVPTDLVEVDDEAMEMNRALIDKLLELEDVDAVYSTQ 288
>gi|302787867|ref|XP_002975703.1| hypothetical protein SELMODRAFT_103622 [Selaginella moellendorffii]
gi|300156704|gb|EFJ23332.1| hypothetical protein SELMODRAFT_103622 [Selaginella moellendorffii]
Length = 253
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 155/225 (68%), Gaps = 6/225 (2%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + K+GG N +SN LAA++++AKEL V KD++ERNIK+A +K Q+ F E YE Y
Sbjct: 28 KEIAQAAKEGGTNLSSNLSLAALVQQAKELHVSKDLIERNIKKAKDKDQQDFTEITYEAY 87
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV IVVEVLTD R+ + VR+V+K KMA GSV+F F+RA VV +K + D +
Sbjct: 88 GFGGVGIVVEVLTDNTNRASSFVRDVIKKSHAKMAASGSVLFNFKRAGVVAVK-GNVDSE 146
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAE----RYYKVVSTSDNYTDITTKLREAGIPF 189
LL A+D GAEDV+EP + + ++ E++ RY+KV++ D++ + L++AG
Sbjct: 147 SLLAAAMDTGAEDVVEPELEDGESPEEKKNLVDVRYFKVITAMDDFGRVKAGLKDAGFSI 206
Query: 190 ETDN-GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ DN G EL+P +EVDDEAME+N+ LI KLLEL+DVDAVY+ Q
Sbjct: 207 DMDNSGLELVPTELVEVDDEAMEMNRALIDKLLELEDVDAVYSTQ 251
>gi|168016853|ref|XP_001760963.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687972|gb|EDQ74352.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 459
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 164/223 (73%), Gaps = 2/223 (0%)
Query: 12 GRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYE 71
G +VK GGPNP +N LA ++++AK+ DVPKDI++RNIK+A++K Q+ F+E YE
Sbjct: 237 GSVHAFTSVKAGGPNPAANAALAQLIQQAKDTDVPKDIIDRNIKKATDKDQQDFVELTYE 296
Query: 72 VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD 131
VYGYGGV +V+EVLTD R+ + +R+VVK G KMAD GSV+F F+ A V+ +K +
Sbjct: 297 VYGYGGVGLVLEVLTDNHNRAASTIRDVVKKNGAKMADSGSVLFNFKSAGVIYVKADKVE 356
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
D LL A+DAGAEDV+EP ++D+ DE+ E+Y+KV++ D + + L+EAG+PF+
Sbjct: 357 ADDLLLAAMDAGAEDVVEPS-SDDEDDEEDDEKYFKVLTPVDQFATVRAGLQEAGVPFDA 415
Query: 192 D-NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
D +G EL+P+ IE DDEAM+LNK LI KLL+LDDVDAVY++Q
Sbjct: 416 DSSGLELIPVAEIEADDEAMDLNKILIEKLLDLDDVDAVYSNQ 458
>gi|226494558|ref|NP_001141671.1| hypothetical protein [Zea mays]
gi|194705494|gb|ACF86831.1| unknown [Zea mays]
gi|413946191|gb|AFW78840.1| hypothetical protein ZEAMMB73_559026 [Zea mays]
Length = 154
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/154 (70%), Positives = 133/154 (86%), Gaps = 1/154 (0%)
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVEVLTDKITRSVA +R VVKDCG K+ADPGSV F+FR+ARVVNIK TDADKDQLL +A
Sbjct: 1 MVVEVLTDKITRSVADIRNVVKDCGAKLADPGSVTFRFRQARVVNIKVTDADKDQLLTVA 60
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGA+DV+EP ++ D E+ AER+YK+V+TS+NY + +KL+E G+ FETDNG EL+P
Sbjct: 61 LDAGADDVLEPNFDD-DDSEEEAERFYKIVTTSENYPVLLSKLQEEGLKFETDNGYELVP 119
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ IEVDDEA+ELNKEL++ LLELDDVDAVYTDQ
Sbjct: 120 LNPIEVDDEAVELNKELVSNLLELDDVDAVYTDQ 153
>gi|302787517|ref|XP_002975528.1| hypothetical protein SELMODRAFT_103583 [Selaginella moellendorffii]
gi|300156529|gb|EFJ23157.1| hypothetical protein SELMODRAFT_103583 [Selaginella moellendorffii]
Length = 292
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 153/227 (67%), Gaps = 8/227 (3%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + ++GG N +SN LAA+++KAKEL V KD++ERNIK+A +K Q+ F E YE Y
Sbjct: 65 KEIAQAAREGGTNLSSNLTLAALVQKAKELHVSKDLIERNIKKAKDKDQQDFTEITYEAY 124
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV IVVEVLTD R+ + VR+V+K KMA GSV+F F+RA VV +K + D +
Sbjct: 125 GFGGVGIVVEVLTDNTNRASSFVRDVIKKSHAKMAASGSVLFNFKRAGVVAVK-GNVDSE 183
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDR------AERYYKVVSTSDNYTDITTKLREAGI 187
LL A+D GAED++EP + +D++ E++ + K + +D++ + L++AG
Sbjct: 184 SLLAAAMDTGAEDIVEPELEDDESPEEKKILCFFFFFFNKELGDNDDFGRVKAGLKDAGF 243
Query: 188 PFETDN-GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+ DN G EL+P +EVDDEAME+N+ LI KLLEL+DVDAVY+ Q
Sbjct: 244 SIDMDNSGLELVPTELVEVDDEAMEMNRALIDKLLELEDVDAVYSTQ 290
>gi|255070455|ref|XP_002507309.1| predicted protein [Micromonas sp. RCC299]
gi|226522584|gb|ACO68567.1| predicted protein [Micromonas sp. RCC299]
Length = 278
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 142/230 (61%), Gaps = 11/230 (4%)
Query: 4 KQSCIRGWGRKSYLRNVKKGG-PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ 62
K++ I G K + VK+GG +P N LA V+ +AKE++VPK++++RNIKRAS+ Q
Sbjct: 57 KRTKIYGKFGKLIVAAVKEGGGADPVMNQQLAKVMSQAKEMNVPKELIDRNIKRASDGKQ 116
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
F+E YE YG+GGV IV+EVLTD + R+ A R VV GGKMA+PGSV+F F R V
Sbjct: 117 ADFVELTYEAYGHGGVGIVIEVLTDNVNRAAAETRTVVNKGGGKMAEPGSVLFNFERKGV 176
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
+ + +++++L++A++AGAED+ + + + VV+ N+ L
Sbjct: 177 ITLHCGGDEEEKVLEVAMEAGAEDIFAAQSSHEG---------FVVVTAVSNFNACRRAL 227
Query: 183 REAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+AG D S +++P+ ++V+ N++LI KLLELDDVDAVYT
Sbjct: 228 VDAGFTIFPDETSLKMVPLVEVDVEAGTANTNQDLIDKLLELDDVDAVYT 277
>gi|384246344|gb|EIE19834.1| DUF28-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 141/225 (62%), Gaps = 11/225 (4%)
Query: 11 WGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK 68
WG K ++ K GG +P N LA +++ K ++VPKDI++RN+K+A+EK Q F E
Sbjct: 23 WGTLAKKIVQAAKAGGADPAGNAKLAEIIKACKAVEVPKDIIDRNLKKATEKNQSDFQEV 82
Query: 69 VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFT 128
YE YG GG + E LTD + RS VR + GGKMAD GSV+F F+R VV + T
Sbjct: 83 TYEAYGAGGTGFIAECLTDNVNRSATDVRTAIVKAGGKMADSGSVLFNFQRCGVVLV--T 140
Query: 129 DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP 188
+ ++++++ A++AGA+DV+ P E+ T E YKV+++ + + + + E G+
Sbjct: 141 GSSEEEVMNAAMEAGADDVV-PAEGEEGTVEG-----YKVLTSQEEFASVRDFILELGLK 194
Query: 189 FETD-NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ D +G P+T++EVDD A E+N+ ++ +LL +DDVDAV+T+
Sbjct: 195 VDHDSSGLMFAPLTSLEVDDAAFEINEAILDRLLAVDDVDAVHTN 239
>gi|307106920|gb|EFN55164.1| hypothetical protein CHLNCDRAFT_52504 [Chlorella variabilis]
Length = 244
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 137/229 (59%), Gaps = 9/229 (3%)
Query: 4 KQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE 63
++S + G K + V++GGP+ N L L AK VP DI++RNIKRASE +
Sbjct: 18 QKSKLYGKIGKQIAQAVRQGGPDALGNLRLRDALAAAKMAQVPVDIIDRNIKRASESKAD 77
Query: 64 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVV 123
+ E YE YG GG V+E LTD I RS + V+ + GGK+ADPGSV+F F+R +V
Sbjct: 78 -YTEMTYEAYGIGGTGFVIECLTDNINRSASDVKAAITKAGGKVADPGSVLFNFQRQGLV 136
Query: 124 NIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLR 183
+ ++ + D + + A++AGA D+ + TDED A +KV++ ++Y +++ L
Sbjct: 137 MVDGSEGE-DAVFEAAMEAGAADI------QQHTDEDGAVVGFKVLTAVEDYGAVSSSLA 189
Query: 184 EAGIPFETD-NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
E G+ + + +G +P+ EVDDE E N+ L+ +LL +DDVDAVYT
Sbjct: 190 EQGLKLQPEASGLVYVPLVQQEVDDEQFEGNEALLERLLAVDDVDAVYT 238
>gi|159483581|ref|XP_001699839.1| hypothetical protein CHLREDRAFT_155606 [Chlamydomonas reinhardtii]
gi|158281781|gb|EDP07535.1| predicted protein [Chlamydomonas reinhardtii]
Length = 296
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 132/230 (57%), Gaps = 7/230 (3%)
Query: 4 KQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE 63
K+S I G K ++ K GG +P +N L +L +AK+L VPKDIVERN+KRA++ Q
Sbjct: 67 KKSKIYGRIGKKIIQLAKAGGADPATNAALDTLLRQAKDLGVPKDIVERNLKRATDAKQG 126
Query: 64 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVV 123
+ E YE YG GG +VV LTD + R+ + V+ V G K+A+PGSV+F F+R ++
Sbjct: 127 DYQEITYEAYGPGGTGLVVFCLTDNVNRTASEVKPTVTKAGAKVAEPGSVLFNFQRCGMI 186
Query: 124 NIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLR 183
+ T +D + + A++AGAEDV P ED YKV + ++ T +R
Sbjct: 187 VVDGT--TEDAVFEAAMEAGAEDVEPVPPEEDGAPSTS----YKVFVPVEAFSSTKTAMR 240
Query: 184 EAGIPF-ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
G E D+ +EVDDEA N+ L+ KLLELDDVDAV+T+
Sbjct: 241 GLGFSVNEEDSDLVFRAAAPVEVDDEAFARNEALVEKLLELDDVDAVFTN 290
>gi|412986054|emb|CCO17254.1| conserved hypothetical protein [Bathycoccus prasinos]
Length = 298
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 131/219 (59%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K R K+GG T N L +L+ AK + VP D++ERN+K+A E F+E YE Y
Sbjct: 85 KEIARAAKEGGTG-TDNVRLQGILKDAKRMSVPADLIERNLKKAGEAKGGDFMELTYECY 143
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV IV+EVL+D + R + VK GGKMA+ GSV+F F R +V +K D+D
Sbjct: 144 GHGGVGIVMEVLSDNVNRCAGDIPAAVKKGGGKMAESGSVLFNFERKGLVYLK--SGDED 201
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+ + A++AGA+DV E +++ +E Y V++ ++ + L + G + +N
Sbjct: 202 AIFEAAIEAGADDVKE--------NDEFSEDGYVVIAEYQSFASVRDSLIDGGFDVDAEN 253
Query: 194 -GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
G +LLP+ +EV +E E N+ L+ K+LE++DVDAV+T
Sbjct: 254 SGLKLLPLANVEVSEEDAEANEVLLDKILEIEDVDAVFT 292
>gi|302837973|ref|XP_002950545.1| hypothetical protein VOLCADRAFT_120889 [Volvox carteri f.
nagariensis]
gi|300264094|gb|EFJ48291.1| hypothetical protein VOLCADRAFT_120889 [Volvox carteri f.
nagariensis]
Length = 637
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 129/230 (56%), Gaps = 7/230 (3%)
Query: 4 KQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE 63
K++ I G K ++ K GG +P N L +L +AK+L VPKDIVERN+KRA++ Q
Sbjct: 408 KKAKIYGRVGKKIIQLAKAGGADPVMNAALDTLLRQAKDLGVPKDIVERNLKRATDSKQG 467
Query: 64 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVV 123
+ E YE YG GG +++ +TD + R+ + V+ V G K+A+PGSVMF F R ++
Sbjct: 468 DYQEVTYEAYGPGGTGLIIFCVTDNLNRTASEVKPTVIKSGAKVAEPGSVMFNFSRCGMI 527
Query: 124 NIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLR 183
+ T +D + + A++AGA+DV P ED + YKV + + LR
Sbjct: 528 VVDGT--TEDAVFEAAMEAGADDVEPVPPEED----GQPSTSYKVFVPVEAFAAAKATLR 581
Query: 184 EAGIPF-ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ G E D+ +EVDDEA + L+ KLLELDDVD+V+T+
Sbjct: 582 QLGFSVNEEDSDLVYKAAAPVEVDDEAFSRCEALMEKLLELDDVDSVFTN 631
>gi|338733770|ref|YP_004672243.1| hypothetical protein SNE_A18750 [Simkania negevensis Z]
gi|336483153|emb|CCB89752.1| UPF0082 protein pc1328 [Simkania negevensis Z]
Length = 237
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 123/219 (56%), Gaps = 13/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + +VK+GGP+P SNT L L+KA+ +VP + +ERNIK+AS Q F E YE+Y
Sbjct: 30 KEIISSVKQGGPDPKSNTKLRIALQKARIANVPAENIERNIKKASSNDQSDFSELTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+V+ +TD R+ + +R GG +A PGSV + F R V+ I D++
Sbjct: 90 GHGGVGIIVDAMTDNKNRTASDMRIATNKKGGTIASPGSVSYNFDRKGVIQIGKDQGDEE 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
L +AGAED D + Y V+++ + ++ KL E GI ++
Sbjct: 150 TLFLQVTEAGAEDF------------DMDDELYLVITSVEQLYEVKEKLEEQGITC-SEA 196
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
E++P TT+E +E + N ELI L +LDDVD V+ +
Sbjct: 197 SLEMIPKTTVECSEEDQKANLELIEFLEDLDDVDVVFHN 235
>gi|299117471|emb|CBN73974.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 306
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 11/216 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGPN +N LA +++AK VPKD + R IKRA + Q F E +YE Y
Sbjct: 97 KKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAY 156
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GG +VV LTD + R++A V+ V K G K A GSV+F+F + V ++ + D++
Sbjct: 157 GHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQ-GEVDEE 215
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
Q+++ A++AG +DV V E D E +++T + +T L EAGI ET
Sbjct: 216 QVIEAAIEAGVDDV---EVVEGDH-----EGTSWILTTPKDLMTLTGALSEAGITGET-- 265
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 229
G L+P +VDDEAMELN + LLEL+DVD V
Sbjct: 266 GLALIPSGLADVDDEAMELNLAAVEALLELEDVDTV 301
>gi|145346479|ref|XP_001417714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577942|gb|ABO96007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 254
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 120/210 (57%), Gaps = 14/210 (6%)
Query: 11 WGRKSYL--RNVKKGG-PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIE 67
+GR L + VK+GG +P +N L +L++A+ +VP+D++ERNIK+A+E + E
Sbjct: 41 YGRYGKLIAQTVKQGGSADPVANAALGKLLKQAQAANVPRDLIERNIKKAAEGKSGDYFE 100
Query: 68 KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF 127
YEVYG GGV IV EVLTD + R+ + R GGKMA+ GSVMF F R V +
Sbjct: 101 LTYEVYGAGGVGIVCEVLTDNVNRAASETRTAATKAGGKMAESGSVMFNFNRRGVCVLD- 159
Query: 128 TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI 187
D++ + + A++AGAED++ D AE + VV D+++ + L EAG
Sbjct: 160 -GGDEEAVFEAAMEAGAEDIV--------PRRDGAEG-WDVVCELDDFSAVQDALSEAGF 209
Query: 188 PFETDNGSELLPITTIEVDDEAMELNKELI 217
D G + +PI IE DE ++N ++I
Sbjct: 210 TINEDTGLKCIPINEIETSDEDADVNDKII 239
>gi|406982835|gb|EKE04104.1| hypothetical protein ACD_20C00106G0001 [uncultured bacterium]
Length = 234
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 17/219 (7%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK+ G +P SN L V++KAK+ ++P D+++RNIK+AS+K + + E YE+Y
Sbjct: 30 KEIISAVKQDGADPKSNAKLKIVIQKAKDANLPNDVIDRNIKKASQKDAQDYFEMTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
GYGGV ++V+++TD R + +R CGG +A P SV F F + V+ + +D
Sbjct: 90 GYGGVGMIVDIMTDNKNRIASDIRIATNKCGGTIAAPNSVAFNFMKKGVIKVDKKLISED 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+L A + GAED + E +YK+++ +N + + G+ + ++
Sbjct: 150 ELFMKATEKGAEDFL------------VEEEFYKIITEPENL-----HIVKDGLNVQCES 192
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
E++P T +E DE ++ N +LI L LDDVDAVY +
Sbjct: 193 TFEMMPKTLMEPGDENIDANIKLIEFLENLDDVDAVYHN 231
>gi|303286057|ref|XP_003062318.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455835|gb|EEH53137.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 276
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 120/210 (57%), Gaps = 23/210 (10%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVV 82
GG +P SNT LA VL A L VP+++V+RNIKRA++ Q ++E YE YG GGV IV+
Sbjct: 88 GGADPVSNTQLARVLADAARLSVPRELVDRNIKRATDGSQADYMELTYEAYGEGGVGIVI 147
Query: 83 EVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDA 142
EVL+D + R+ A + + GGK+A+PGS F +T ++ + ++A +
Sbjct: 148 EVLSDNVNRAAADTKATINKNGGKVAEPGSGAF-----------YT--LEENVFEVACEN 194
Query: 143 GAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPIT 201
G +DV+ ED + + + + L +AG D + +++P+
Sbjct: 195 GGDDVVPREDGEDG---------FTIYTEVQGFMQCQRALGDAGFEINPDETALKMIPLA 245
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++EV DEA E+N+ L+ KLLEL+DVDAVYT
Sbjct: 246 SVEVSDEAAEVNEALVEKLLELEDVDAVYT 275
>gi|297620626|ref|YP_003708763.1| hypothetical protein wcw_0385 [Waddlia chondrophila WSU 86-1044]
gi|297375927|gb|ADI37757.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
gi|337292376|emb|CCB90405.1| UPF0082 protein pc1328 [Waddlia chondrophila 2032/99]
Length = 243
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 15/222 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P +N L VL+KAK +VP DI++RNIK+A++ Q F E YE+Y
Sbjct: 30 KEIISAVKVGGPDPKANPRLRLVLQKAKSQNVPNDIIDRNIKKATDADQADFDELTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+ +V+TD R + +R GG +A PGSV F F R V+ + A ++
Sbjct: 90 GHGGVGIICDVMTDNKNRLASEMRIATNKKGGSIATPGSVSFNFDRKGVIQMALDHAVEE 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+L + +++AGAE+ ++ E + + + ++ + + G F+ D
Sbjct: 150 ELFNASIEAGAEEF------------EKEEGMFVITTDPTMLYEVKEAIEKLG--FKCDE 195
Query: 194 GS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
S E++P ++E D E + N ELI L E+DDVD VY + I
Sbjct: 196 ASLEMIPKVSVECDVETAKSNLELIEWLEEIDDVDVVYHNMI 237
>gi|282891212|ref|ZP_06299715.1| hypothetical protein pah_c048o043 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174129|ref|YP_004650939.1| hypothetical protein PUV_01350 [Parachlamydia acanthamoebae UV-7]
gi|281498905|gb|EFB41221.1| hypothetical protein pah_c048o043 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478487|emb|CCB85085.1| UPF0082 protein pc1328 [Parachlamydia acanthamoebae UV-7]
Length = 245
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 15/220 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+ +N L VL+KA+E +VP DI++RNIK+AS Q +IE YE+Y
Sbjct: 30 KEIISAVKLGGPDAKANPRLRIVLQKAREANVPNDIIDRNIKKASSADQADYIEMTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+++V+TD R + +R GG +A PG+V F F R V+ I ++
Sbjct: 90 GHGGVGIIIDVMTDNKNRISSDMRIATNKRGGSIATPGAVAFNFDRKGVIQISKKHGVEE 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+L + A++AGAED + A+ ++ + + + + + G F+ D
Sbjct: 150 ELFNAAIEAGAEDF------------EVADEFFMITTDPVDLFHVKDAVNHLG--FQADE 195
Query: 194 GS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ E++P + +E D+E + N LI L L+DVDAVY +
Sbjct: 196 ATLEMIPKSYVECDEETAKANLALIDWLEALEDVDAVYHN 235
>gi|406987661|gb|EKE07938.1| hypothetical protein ACD_17C00442G0001 [uncultured bacterium]
Length = 238
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 126/219 (57%), Gaps = 14/219 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK+GG + +N L ++KAK+ ++P D VERNIK+A+ + ++ YE+Y
Sbjct: 30 KEIISAVKQGGSDLKANAKLKVAIQKAKDANIPNDNVERNIKKAASQDSTDYVSMTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV ++V+++TD R + +R CGG +A PGSV + F R V+ +K T +D
Sbjct: 90 GFGGVGLIVDIMTDNKNRISSDIRIATNKCGGTIATPGSVSYNFDRKGVIRVKRT-LPED 148
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+L +A +AGAED E+D +++++T +++ I L +AG+ E
Sbjct: 149 ELFLLATEAGAEDF----SGEEDV--------FQIITTIESFHYIKEILEKAGVIIEEAE 196
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P +EVDDE + N LI L LDDVDAVY +
Sbjct: 197 LA-MVPKIWVEVDDETADSNITLIEWLESLDDVDAVYHN 234
>gi|255348830|ref|ZP_05380837.1| hypothetical protein Ctra70_02435 [Chlamydia trachomatis 70]
gi|255503370|ref|ZP_05381760.1| hypothetical protein Ctra7_02445 [Chlamydia trachomatis 70s]
gi|385241835|ref|YP_005809675.1| hypothetical protein E11023_02400 [Chlamydia trachomatis E/11023]
gi|385245442|ref|YP_005814265.1| hypothetical protein E150_02415 [Chlamydia trachomatis E/150]
gi|386262814|ref|YP_005816093.1| hypothetical protein SW2_4661 [Chlamydia trachomatis Sweden2]
gi|389859029|ref|YP_006361270.1| hypothetical protein ESW3_4661 [Chlamydia trachomatis E/SW3]
gi|289525502|emb|CBJ14979.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]
gi|296435058|gb|ADH17236.1| hypothetical protein E150_02415 [Chlamydia trachomatis E/150]
gi|296438778|gb|ADH20931.1| hypothetical protein E11023_02400 [Chlamydia trachomatis E/11023]
gi|380250978|emb|CCE12739.1| conserved hypothetical protein [Chlamydia trachomatis E/SW3]
gi|440529838|emb|CCP55322.1| hypothetical protein SOTONE4_00482 [Chlamydia trachomatis
E/SotonE4]
gi|440530737|emb|CCP56221.1| hypothetical protein SOTONE8_00488 [Chlamydia trachomatis
E/SotonE8]
gi|440535205|emb|CCP60715.1| hypothetical protein BOUR_00487 [Chlamydia trachomatis E/Bour]
Length = 238
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P SN L +++KAK+ ++P + +ERN+K+AS Q+ + E YE+Y
Sbjct: 30 KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEITYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F R + D+
Sbjct: 90 GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACCVPKHSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D G ED+ D+D+ E ++ V+ + + L G+ ++
Sbjct: 150 SLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLASVKEALLAKGVTC-SEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D+E + N LIA L +DDVD VY +
Sbjct: 198 RLIYVPLRLVDCDEETGKSNLALIAWLENIDDVDDVYHN 236
>gi|15835357|ref|NP_297116.1| hypothetical protein TC0742 [Chlamydia muridarum Nigg]
gi|270285529|ref|ZP_06194923.1| hypothetical protein CmurN_03748 [Chlamydia muridarum Nigg]
gi|270289540|ref|ZP_06195842.1| hypothetical protein CmurW_03848 [Chlamydia muridarum Weiss]
gi|301336926|ref|ZP_07225128.1| hypothetical protein CmurM_03805 [Chlamydia muridarum MopnTet14]
gi|14195461|sp|Q9PJT5.1|Y742_CHLMU RecName: Full=Probable transcriptional regulatory protein TC_0742
gi|7190771|gb|AAF39551.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 238
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P SN L +++KAK+ ++P + +ERN+K+AS Q+ + E YE+Y
Sbjct: 30 KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F R + + D+
Sbjct: 90 GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACYVPKSSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D G ED+ D DE+ ++ V+ + + L G+ ++
Sbjct: 150 SLLTHVIDCGGEDL-------DSEDEE----FFLVLCEPTDLASVKEALLAKGVTC-SEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D+EA + N LI L +DDVD VY +
Sbjct: 198 KMIYVPLRLVDCDEEAGKSNLALIEWLENIDDVDDVYHN 236
>gi|384449165|ref|YP_005661767.1| hypothetical protein CPK_ORF01090 [Chlamydophila pneumoniae LPCoLN]
gi|269303451|gb|ACZ33551.1| conserved hypothetical protein TIGR01033 [Chlamydophila pneumoniae
LPCoLN]
Length = 238
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GG +P SN L V++KAKE ++P + +ERN+K+A+ Q+ F E YE+Y
Sbjct: 30 KELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKKATSAEQKNFEEVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R + GG + +PGSV++ F R + + D++
Sbjct: 90 GHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYNFARKGACTVAKSSIDEE 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
L A++AGAED+ DT++ E + V+ + KL G D
Sbjct: 150 VLFSYAIEAGAEDL--------DTED---EENFLVICAPSELASVKEKLISQGATCSEDR 198
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP+ ++ D++ E N LI L +++DVD VY +
Sbjct: 199 LI-YLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHN 236
>gi|89898645|ref|YP_515755.1| hypothetical protein CF0838 [Chlamydophila felis Fe/C-56]
gi|119392007|sp|Q253C8.1|Y838_CHLFF RecName: Full=Probable transcriptional regulatory protein CF0838
gi|89332017|dbj|BAE81610.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 238
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P +N L +++KAK+ ++P + +ERN+K+AS Q+ F + YE+Y
Sbjct: 30 KELISAVKMGGPDPKTNARLRVIIQKAKDQNIPSENIERNLKKASSADQKNFEDVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
GYGGV I+VE +TD R+ + +R V GG + +PGSV++ F R + D+
Sbjct: 90 GYGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFSRKGACYVPKNSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL ++ GAED+ D+ DE+ ++ V+ + + + +L G+ T+
Sbjct: 150 ALLSHVIEVGAEDL-------DNDDEE----HFVVLCDPVDLSSVKEQLVALGVTC-TEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D++ E N LI L ++DDVD VY +
Sbjct: 198 KLIYVPLRVVDCDEKDGEANLALIEWLEKIDDVDEVYHN 236
>gi|15618484|ref|NP_224769.1| hypothetical protein CPn0573 [Chlamydophila pneumoniae CWL029]
gi|15836104|ref|NP_300628.1| hypothetical protein CPj0573 [Chlamydophila pneumoniae J138]
gi|16752465|ref|NP_444727.1| hypothetical protein CP0176 [Chlamydophila pneumoniae AR39]
gi|33241926|ref|NP_876867.1| hypothetical protein CpB0595 [Chlamydophila pneumoniae TW-183]
gi|6226436|sp|Q9Z7Y0.1|Y573_CHLPN RecName: Full=Probable transcriptional regulatory protein
CPn_0573/CP_0176/CPj0573/CpB0595
gi|4376867|gb|AAD18713.1| YebC family hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189106|gb|AAF38050.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8978944|dbj|BAA98779.1| YebC family hypothetical protein [Chlamydophila pneumoniae J138]
gi|33236436|gb|AAP98524.1| hypothetical protein CpB0595 [Chlamydophila pneumoniae TW-183]
Length = 238
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GG +P SN L V++KAKE ++P + +ERN+K+A+ Q+ F E YE+Y
Sbjct: 30 KELISAVKLGGADPKSNARLRMVIQKAKENNIPNENIERNLKKATSAEQKNFEEVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R + GG + +PGSV++ F R + + D++
Sbjct: 90 GHGGVGIIVEAMTDNKNRTASDMRIAINKRGGSLVEPGSVLYNFARKGACTVAKSSIDEE 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+ A++AGAED+ DT++ E + V+ + KL G D
Sbjct: 150 VIFSYAIEAGAEDL--------DTED---EENFLVICAPSELASVKEKLISQGATCSEDR 198
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP+ ++ D++ E N LI L +++DVD VY +
Sbjct: 199 LI-YLPLRLVDCDEKDGEANLALIDWLEQIEDVDDVYHN 236
>gi|76789193|ref|YP_328279.1| hypothetical protein CTA_0499 [Chlamydia trachomatis A/HAR-13]
gi|166154671|ref|YP_001654789.1| hypothetical protein CTL0717 [Chlamydia trachomatis 434/Bu]
gi|166155546|ref|YP_001653801.1| hypothetical protein CTLon_0713 [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|237802885|ref|YP_002888079.1| hypothetical protein JALI_4591 [Chlamydia trachomatis B/Jali20/OT]
gi|237804807|ref|YP_002888961.1| hypothetical protein CTB_4591 [Chlamydia trachomatis B/TZ1A828/OT]
gi|301335941|ref|ZP_07224185.1| hypothetical protein CtraL_03910 [Chlamydia trachomatis L2tet1]
gi|339626135|ref|YP_004717614.1| hypothetical protein CTL2C_491 [Chlamydia trachomatis L2c]
gi|376282466|ref|YP_005156292.1| hypothetical protein CTR_4591 [Chlamydia trachomatis A2497]
gi|385270156|ref|YP_005813316.1| putative cytosolic protein [Chlamydia trachomatis A2497]
gi|119372144|sp|Q3KLP1.1|Y499_CHLTA RecName: Full=Probable transcriptional regulatory protein CTA_0499
gi|226708035|sp|B0BC95.1|Y713_CHLTB RecName: Full=Probable transcriptional regulatory protein
CTLon_0713
gi|226708038|sp|B0B830.1|Y717_CHLT2 RecName: Full=Probable transcriptional regulatory protein CTL0717
gi|76167723|gb|AAX50731.1| hypthetical protein YebC family [Chlamydia trachomatis A/HAR-13]
gi|165930659|emb|CAP04156.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu]
gi|165931534|emb|CAP07110.1| conserved hypothetical protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|231273107|emb|CAX10020.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274119|emb|CAX10913.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT]
gi|339460907|gb|AEJ77410.1| conserved hypothetical protein [Chlamydia trachomatis L2c]
gi|347975296|gb|AEP35317.1| putative cytosolic protein [Chlamydia trachomatis A2497]
gi|371908496|emb|CAX09126.1| conserved hypothetical protein [Chlamydia trachomatis A2497]
gi|438690390|emb|CCP49647.1| hypothetical protein A7249_00489 [Chlamydia trachomatis A/7249]
gi|438691475|emb|CCP48749.1| hypothetical protein A5291_00490 [Chlamydia trachomatis A/5291]
gi|438692848|emb|CCP47850.1| hypothetical protein A363_00491 [Chlamydia trachomatis A/363]
gi|440526266|emb|CCP51750.1| hypothetical protein L2B8200_00476 [Chlamydia trachomatis
L2b/8200/07]
gi|440536091|emb|CCP61604.1| hypothetical protein L2B795_00477 [Chlamydia trachomatis L2b/795]
gi|440536984|emb|CCP62498.1| hypothetical protein L1440_00480 [Chlamydia trachomatis L1/440/LN]
gi|440537873|emb|CCP63387.1| hypothetical protein L11322_00477 [Chlamydia trachomatis
L1/1322/p2]
gi|440538763|emb|CCP64277.1| hypothetical protein L1115_00477 [Chlamydia trachomatis L1/115]
gi|440539652|emb|CCP65166.1| hypothetical protein L1224_00477 [Chlamydia trachomatis L1/224]
gi|440540544|emb|CCP66058.1| hypothetical protein L225667R_00479 [Chlamydia trachomatis
L2/25667R]
gi|440541432|emb|CCP66946.1| hypothetical protein L3404_00477 [Chlamydia trachomatis L3/404/LN]
gi|440542319|emb|CCP67833.1| hypothetical protein L2BUCH2_00476 [Chlamydia trachomatis
L2b/UCH-2]
gi|440543210|emb|CCP68724.1| hypothetical protein L2BCAN2_00477 [Chlamydia trachomatis
L2b/Canada2]
gi|440544101|emb|CCP69615.1| hypothetical protein L2BLST_00476 [Chlamydia trachomatis L2b/LST]
gi|440544991|emb|CCP70505.1| hypothetical protein L2BAMS1_00476 [Chlamydia trachomatis L2b/Ams1]
gi|440545881|emb|CCP71395.1| hypothetical protein L2BCV204_00476 [Chlamydia trachomatis
L2b/CV204]
gi|440914143|emb|CCP90560.1| hypothetical protein L2BAMS2_00476 [Chlamydia trachomatis L2b/Ams2]
gi|440915033|emb|CCP91450.1| hypothetical protein L2BAMS3_00476 [Chlamydia trachomatis L2b/Ams3]
gi|440915924|emb|CCP92341.1| hypothetical protein L2BCAN1_00477 [Chlamydia trachomatis
L2b/Canada1]
gi|440916819|emb|CCP93236.1| hypothetical protein L2BAMS4_00477 [Chlamydia trachomatis L2b/Ams4]
gi|440917709|emb|CCP94126.1| hypothetical protein L2BAMS5_00477 [Chlamydia trachomatis L2b/Ams5]
Length = 238
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P SN L +++KAK+ ++P + +ERN+K+AS Q+ + E YE+Y
Sbjct: 30 KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F R + D+
Sbjct: 90 GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACYVPKHSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D G ED+ D+D+ E ++ V+ + + L G+ ++
Sbjct: 150 SLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLASVKEALLAKGVTC-SEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D+E + N LI L +DDVD VY +
Sbjct: 198 RLIYVPLRLVDCDEETGKSNLALIEWLENIDDVDDVYHN 236
>gi|406593101|ref|YP_006740280.1| hypothetical protein B712_0192 [Chlamydia psittaci NJ1]
gi|405788973|gb|AFS27715.1| hypothetical protein B712_0192 [Chlamydia psittaci NJ1]
Length = 238
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P +N L V++KAK+ ++P + +ERN+K+A+ Q+ F YE+Y
Sbjct: 30 KELMAAVKMGGPDPKTNARLRVVIQKAKDQNIPSENIERNLKKATSADQKNFENVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F R + + D+
Sbjct: 90 GHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFVRKGACYVPKSSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D GAED+ D D+D ++ V+ + KL G+ ++
Sbjct: 150 ALLSYVIDVGAEDL--------DNDDD---EHFLVLCDPVELASVKEKLISLGVTC-SEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D++ E N LI L ++DDVD VY +
Sbjct: 198 KLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHN 236
>gi|29839936|ref|NP_829042.1| hypothetical protein CCA00169 [Chlamydophila caviae GPIC]
gi|33516988|sp|Q824H7.1|Y169_CHLCV RecName: Full=Probable transcriptional regulatory protein CCA_00169
gi|29834283|gb|AAP04920.1| conserved hypothetical protein TIGR01033 [Chlamydophila caviae
GPIC]
Length = 238
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P +N L V++KAK+ ++P + +ERN+K+A+ Q+ F + YE+Y
Sbjct: 30 KELMAAVKMGGPDPKTNARLRVVIQKAKDQNIPNENIERNLKKATSADQKNFEDVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F R I + D+
Sbjct: 90 GFGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFARKGACYISKSSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D GAED+ D+ DE+ + V+ + KL G+ ++
Sbjct: 150 TLLSHVIDVGAEDL-------DNDDEEN----FIVLCDPVELASVKEKLVALGVTC-SEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D++ E N LI L ++DDVD VY +
Sbjct: 198 KLIYVPLRLVDCDEKDGEANLALIEWLEQIDDVDEVYHN 236
>gi|329942487|ref|ZP_08291297.1| hypothetical protein G5Q_0182 [Chlamydophila psittaci Cal10]
gi|332287124|ref|YP_004422025.1| hypothetical protein CPSIT_0191 [Chlamydophila psittaci 6BC]
gi|384450270|ref|YP_005662870.1| hypothetical protein G5O_0194 [Chlamydophila psittaci 6BC]
gi|384451275|ref|YP_005663873.1| hypothetical protein CPS0A_0196 [Chlamydophila psittaci 01DC11]
gi|384452251|ref|YP_005664848.1| hypothetical protein CPS0D_0191 [Chlamydophila psittaci 08DC60]
gi|384453225|ref|YP_005665821.1| hypothetical protein CPS0C_0193 [Chlamydophila psittaci C19/98]
gi|384454203|ref|YP_005666798.1| hypothetical protein CPS0B_0193 [Chlamydophila psittaci 02DC15]
gi|392376377|ref|YP_004064155.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|406591989|ref|YP_006739169.1| hypothetical protein B711_0197 [Chlamydia psittaci CP3]
gi|406594190|ref|YP_006741321.1| hypothetical protein B599_0192 [Chlamydia psittaci MN]
gi|407453660|ref|YP_006732768.1| hypothetical protein B595_0196 [Chlamydia psittaci 84/55]
gi|407454991|ref|YP_006733882.1| hypothetical protein B598_0191 [Chlamydia psittaci GR9]
gi|407456360|ref|YP_006734933.1| hypothetical protein B600_0203 [Chlamydia psittaci VS225]
gi|407457724|ref|YP_006736029.1| hypothetical protein B601_0189 [Chlamydia psittaci WS/RT/E30]
gi|407460341|ref|YP_006738116.1| hypothetical protein B603_0192 [Chlamydia psittaci WC]
gi|410858154|ref|YP_006974094.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
gi|449070818|ref|YP_007437898.1| hypothetical protein AO9_00905 [Chlamydophila psittaci Mat116]
gi|313847720|emb|CBY16710.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|325507125|gb|ADZ18763.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]
gi|328815397|gb|EGF85385.1| hypothetical protein G5Q_0182 [Chlamydophila psittaci Cal10]
gi|328914364|gb|AEB55197.1| conserved hypothetical protein TIGR01033 [Chlamydophila psittaci
6BC]
gi|334692006|gb|AEG85225.1| conserved hypothetical protein [Chlamydophila psittaci C19/98]
gi|334692985|gb|AEG86203.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]
gi|334693960|gb|AEG87177.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]
gi|334694940|gb|AEG88156.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]
gi|405780419|gb|AFS19169.1| hypothetical protein B595_0196 [Chlamydia psittaci 84/55]
gi|405781534|gb|AFS20283.1| hypothetical protein B598_0191 [Chlamydia psittaci GR9]
gi|405782622|gb|AFS21370.1| hypothetical protein B599_0192 [Chlamydia psittaci MN]
gi|405783621|gb|AFS22368.1| hypothetical protein B600_0203 [Chlamydia psittaci VS225]
gi|405784767|gb|AFS23513.1| hypothetical protein B601_0189 [Chlamydia psittaci WS/RT/E30]
gi|405787196|gb|AFS25940.1| hypothetical protein B603_0192 [Chlamydia psittaci WC]
gi|405787861|gb|AFS26604.1| hypothetical protein B711_0197 [Chlamydia psittaci CP3]
gi|410811049|emb|CCO01692.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
gi|449039326|gb|AGE74750.1| hypothetical protein AO9_00905 [Chlamydophila psittaci Mat116]
Length = 238
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P +N L V++KAK+ ++P + +ERN+K+A+ Q+ F YE+Y
Sbjct: 30 KELMAAVKMGGPDPKTNARLRVVIQKAKDQNIPSENIERNLKKATSADQKNFENVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F R + + D+
Sbjct: 90 GHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFVRKGACYVPKSSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D GAED+ D D+D ++ V+ + KL G+ ++
Sbjct: 150 ALLSYVIDVGAEDL--------DNDDD---EHFLVLCDPVELASVKEKLIALGVTC-SEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D++ E N LI L ++DDVD VY +
Sbjct: 198 KLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHN 236
>gi|255507048|ref|ZP_05382687.1| hypothetical protein CtraD_02420 [Chlamydia trachomatis D(s)2923]
gi|389858153|ref|YP_006360395.1| hypothetical protein FSW4_4661 [Chlamydia trachomatis F/SW4]
gi|389859905|ref|YP_006362145.1| hypothetical protein FSW5_4661 [Chlamydia trachomatis F/SW5]
gi|380249225|emb|CCE14517.1| conserved hypothetical protein [Chlamydia trachomatis F/SW5]
gi|380250100|emb|CCE13628.1| conserved hypothetical protein [Chlamydia trachomatis F/SW4]
gi|440527164|emb|CCP52648.1| hypothetical protein SOTOND1_00484 [Chlamydia trachomatis
D/SotonD1]
gi|440531628|emb|CCP57138.1| hypothetical protein SOTONF3_00482 [Chlamydia trachomatis
F/SotonF3]
Length = 238
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P SN L +++KAK+ ++P + +ERN+K+AS Q+ + E YE+Y
Sbjct: 30 KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEITYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F R + D+
Sbjct: 90 GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACCVPKHSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D G ED+ D+D+ E ++ V+ + + L G+ ++
Sbjct: 150 SLLTHVIDCGGEDL--------DSDD---EEFFLVLCEPTDLASVKEALLAKGVTC-SEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D+E + N LI L ++DVD VY +
Sbjct: 198 RLIYVPLRLVDCDEETGKSNLALIEWLENINDVDDVYHN 236
>gi|15605184|ref|NP_219970.1| hypothetical protein CT457 [Chlamydia trachomatis D/UW-3/CX]
gi|255311269|ref|ZP_05353839.1| hypothetical protein Ctra62_02385 [Chlamydia trachomatis 6276]
gi|255317571|ref|ZP_05358817.1| hypothetical protein Ctra6_02380 [Chlamydia trachomatis 6276s]
gi|385239980|ref|YP_005807822.1| hypothetical protein G9768_02385 [Chlamydia trachomatis G/9768]
gi|385240904|ref|YP_005808745.1| hypothetical protein G11222_02390 [Chlamydia trachomatis G/11222]
gi|385242758|ref|YP_005810597.1| hypothetical protein CTG9301_02395 [Chlamydia trachomatis G/9301]
gi|385243665|ref|YP_005811511.1| cytosolic protein [Chlamydia trachomatis D-EC]
gi|385244545|ref|YP_005812389.1| cytosolic protein [Chlamydia trachomatis D-LC]
gi|385246367|ref|YP_005815189.1| hypothetical protein G11074_02390 [Chlamydia trachomatis G/11074]
gi|6226437|sp|O84463.1|Y457_CHLTR RecName: Full=Probable transcriptional regulatory protein CT_457
gi|3328890|gb|AAC68057.1| YebC family [Chlamydia trachomatis D/UW-3/CX]
gi|296435985|gb|ADH18159.1| hypothetical protein G9768_02385 [Chlamydia trachomatis G/9768]
gi|296436912|gb|ADH19082.1| hypothetical protein G11222_02390 [Chlamydia trachomatis G/11222]
gi|296437846|gb|ADH20007.1| hypothetical protein G11074_02390 [Chlamydia trachomatis G/11074]
gi|297140346|gb|ADH97104.1| hypothetical protein CTG9301_02395 [Chlamydia trachomatis G/9301]
gi|297748588|gb|ADI51134.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC]
gi|297749468|gb|ADI52146.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC]
gi|440525379|emb|CCP50630.1| hypothetical protein SOTONK1_00481 [Chlamydia trachomatis
K/SotonK1]
gi|440528056|emb|CCP53540.1| hypothetical protein SOTOND5_00482 [Chlamydia trachomatis
D/SotonD5]
gi|440528946|emb|CCP54430.1| hypothetical protein SOTOND6_00481 [Chlamydia trachomatis
D/SotonD6]
gi|440532521|emb|CCP58031.1| hypothetical protein SOTONG1_00483 [Chlamydia trachomatis
G/SotonG1]
gi|440533414|emb|CCP58924.1| hypothetical protein SOTONIA1_00484 [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534308|emb|CCP59818.1| hypothetical protein SOTONIA3_00484 [Chlamydia trachomatis
Ia/SotonIa3]
Length = 238
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P SN L +++KAK+ ++P + +ERN+K+AS Q+ + E YE+Y
Sbjct: 30 KELISAVKMGGPDPKSNARLRMIIQKAKDQNIPNENIERNLKKASSADQKNYEEVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F R + D+
Sbjct: 90 GFGGVGIIVEAMTDNKNRTASDMRVAVNKRGGALVEPGSVLYNFSRKGACYVPKHSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D G ED+ D+D+ E ++ V+ + + L G+ ++
Sbjct: 150 SLLTHMIDCGGEDL--------DSDD---EEFFLVLCEPTDLASVKEALLAKGVTC-SEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D+E + N LI L ++DVD VY +
Sbjct: 198 RLIYVPLRLVDCDEETGKSNLALIEWLENINDVDDVYHN 236
>gi|384135947|ref|YP_005518661.1| hypothetical protein TC41_2236 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290032|gb|AEJ44142.1| protein of unknown function DUF28 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 249
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 18/234 (7%)
Query: 4 KQSCIRGWG----RKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
KQ IRG K + ++GG NP +N L +E+A+ ++P + ++R I +A+
Sbjct: 18 KQDAIRGQLFTKLSKDIYQAAREGGGNPETNFRLRVAIERARANNLPMENIQRTIAKATG 77
Query: 60 KGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + A + E +YE YG GV++++E+LTD R+ A VR + + GG +A+ G+V + F+
Sbjct: 78 QIEGATYEELLYEGYGPHGVALLLEILTDNRNRTAAEVRHLFRKHGGNLAESGAVAWMFQ 137
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
R + + D D L+ +AL+AGAEDVIE R Y V +T DN+ +
Sbjct: 138 RFGEIVVPKYKVDGDDLMMVALEAGAEDVIE------------RSRTYVVKTTPDNFRAV 185
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L E GIP+E + T +++ +EA+E +L+ L LDDV VYT+
Sbjct: 186 RMSLEEKGIPYE-EASLTYEASTKMDLPEEALEQVYDLVEALESLDDVQTVYTN 238
>gi|62184810|ref|YP_219595.1| hypothetical protein CAB166 [Chlamydophila abortus S26/3]
gi|424824859|ref|ZP_18249846.1| hypothetical protein CAB1_0177 [Chlamydophila abortus LLG]
gi|81313011|sp|Q5L6U7.1|Y166_CHLAB RecName: Full=Probable transcriptional regulatory protein CAB166
gi|62147877|emb|CAH63624.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
gi|333409958|gb|EGK68945.1| hypothetical protein CAB1_0177 [Chlamydophila abortus LLG]
Length = 238
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P +N L +++KAK+ ++P + +ERN+K+A+ Q+ F YE+Y
Sbjct: 30 KELMAAVKMGGPDPKTNARLRMIIQKAKDQNIPNENIERNLKKATSADQKNFENVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F R + + D+
Sbjct: 90 GHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFVRKGACYVPKSSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D GAED+ D D+D ++ V+ + KL G+ ++
Sbjct: 150 VLLPHVIDVGAEDL--------DNDDD---EHFLVLCDPVELASVKEKLTALGVAC-SEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D++ E N LI L ++DDVD VY +
Sbjct: 198 KLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHN 236
>gi|330444187|ref|YP_004377173.1| hypothetical protein G5S_0485 [Chlamydophila pecorum E58]
gi|328807297|gb|AEB41470.1| conserved hypothetical protein TIGR01033 [Chlamydophila pecorum
E58]
Length = 238
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GG + +N L +++KAK+ ++P + +ERN+K+AS Q + E YE+Y
Sbjct: 30 KELISAVKLGGADAKTNARLRMIIQKAKDHNIPNENIERNLKKASSAEQNTYEEVTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
GYGGV I+VE +TD R+ + +R V GG + +PGSV++ F R + ++
Sbjct: 90 GYGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFARKGACYVPKASIKEE 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+LL A+DAGAED+ D+ DE+ ++ V+ S + L G+ D
Sbjct: 150 ELLAKAIDAGAEDL-------DNEDEE----HFLVICDSTELAAVKENLLSQGVHCVEDK 198
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP+ ++ ++E + N LI L ++ DVD VY +
Sbjct: 199 LI-YLPLRLVDCNEEYGKANLALIEWLEQVSDVDEVYHN 236
>gi|218288868|ref|ZP_03493119.1| protein of unknown function DUF28 [Alicyclobacillus acidocaldarius
LAA1]
gi|218240957|gb|EED08134.1| protein of unknown function DUF28 [Alicyclobacillus acidocaldarius
LAA1]
Length = 247
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 18/234 (7%)
Query: 4 KQSCIRGWG----RKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
KQ IRG K + ++GG NP +N L +E+A+ ++P + ++R I +A+
Sbjct: 16 KQDAIRGQLFTKLSKDIYQAAREGGGNPETNFRLRVAIERARANNLPMENIQRTIAKATG 75
Query: 60 KGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + A + E +YE YG GV++++E+LTD R+ A VR + + GG +A+ G+V + F
Sbjct: 76 QLEGATYEELLYEGYGPHGVALLLEILTDNRNRTAAEVRHLFRKHGGNLAESGAVAWMFN 135
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
R + + D D L+ +AL+AGAEDVIE R Y V +T DN+ +
Sbjct: 136 RFGEIVVPKDKVDADDLMMVALEAGAEDVIE------------RSRTYVVKTTPDNFRAV 183
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L E GIP+E + T +++ +EA+E +L+ L LDDV VYT+
Sbjct: 184 RLSLEERGIPYE-EASLTYEASTKMDLPEEALEQVYDLVEALESLDDVQTVYTN 236
>gi|339450847|ref|ZP_08654217.1| hypothetical protein LlacK3_06612 [Leuconostoc lactis KCTC 3528]
Length = 240
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 117/215 (54%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V+EKAK ++PKD ++R + +AS G + F E YE YG GV+
Sbjct: 36 AKAGGADPNMNASLRLVVEKAKAANMPKDNIQRALDKASGAGGQKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK---FTDADKDQLL 136
I+VE TD I R+V+++R K GG + GSV F+F R + I F D D+D +L
Sbjct: 96 ILVEASTDNINRTVSSIRNSFKHFGGALGTSGSVAFQFDRKGYLAINRADFPDLDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV + +++ +T+ ++ + + + AG FE +
Sbjct: 156 EAALEAGAEDV------------QTQDEVFEIYTTAADFQAVESAMTAAGYVFEEAEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ E+ DE E +L+ +L E +DV AVYT
Sbjct: 203 MIAQNPAEISDEDREKLDKLVDELEENEDVLAVYT 237
>gi|258512081|ref|YP_003185515.1| hypothetical protein Aaci_2117 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478807|gb|ACV59126.1| protein of unknown function DUF28 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 247
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 18/234 (7%)
Query: 4 KQSCIRGWG----RKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
KQ IRG K + ++GG NP +N L +E+A+ ++P + ++R I +A+
Sbjct: 16 KQDAIRGQLFTKLSKDIYQAAREGGGNPETNFRLRVAIERARANNLPMENIQRTIAKATG 75
Query: 60 KGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + A + E +YE YG GV++++E+LTD R+ A VR + + GG +A+ G+V + F+
Sbjct: 76 QLEGATYEELLYEGYGPHGVALLLEILTDNRNRTAAEVRHLFRKHGGNLAESGAVAWMFQ 135
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
R + + D D L+ +AL+AGAEDVIE R Y V +T DN+ +
Sbjct: 136 RFGEIVVPKDKVDADDLMMVALEAGAEDVIE------------RSRTYVVKTTPDNFRAV 183
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L E GIP+E + T +++ +EA+E +L+ L LDDV V+T+
Sbjct: 184 RMSLEEKGIPYE-EASLTYEASTKMDLPEEALEQVYDLVEALESLDDVQTVFTN 236
>gi|291280038|ref|YP_003496873.1| hypothetical protein DEFDS_1661 [Deferribacter desulfuricans SSM1]
gi|290754740|dbj|BAI81117.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 249
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 18/215 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
K GG +P N L LEKA++ ++PK+ VER IK+ + +G E+ E V YE YG GGV+
Sbjct: 37 KIGGSDPEMNPRLRVALEKARQANMPKENVERAIKKGTGEGNESNFEDVIYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V+ LTD R+VA VR + GG + + G V + F + V+ IK D+D L+DI
Sbjct: 97 ILVQALTDNKNRTVAEVRSTLTKRGGSLGEAGCVAWLFEKKGVIGIKRETIDEDTLMDIV 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
L+AGAED+ V +D+ Y+V++ Y ++ L + GI E +EL
Sbjct: 157 LEAGAEDL---KVEDDN---------YEVITEPSEYYNVKKALEDKGIKIEY---AELTM 201
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T++V+ E + LI L +LDDV VY +
Sbjct: 202 KPKNTVKVEGENAKKLLGLIEALEDLDDVQEVYAN 236
>gi|407458971|ref|YP_006737074.1| hypothetical protein B602_0191 [Chlamydia psittaci M56]
gi|405786192|gb|AFS24937.1| hypothetical protein B602_0191 [Chlamydia psittaci M56]
Length = 238
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 12/219 (5%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GGP+P +N L V++KAK+ ++P + +ERN+K+A+ Q+ F +YE+Y
Sbjct: 30 KELMAAVKIGGPDPKTNARLRMVIQKAKDQNIPNENIERNLKKATSTDQKNFENVIYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV I+VE +TD R+ + +R V GG + +PGSV++ F + + D+
Sbjct: 90 GHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFVHKGACYVPKSSIDEA 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL +D GAED+ D D+D ++ V+ + KL G+ +
Sbjct: 150 VLLPYVIDVGAEDL--------DNDDD---EHFLVLCDPVELASVKEKLIALGVSC-AEE 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P+ ++ D++ E N LI L ++DDVD VY +
Sbjct: 198 KLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHN 236
>gi|160943942|ref|ZP_02091172.1| hypothetical protein FAEPRAM212_01443 [Faecalibacterium prausnitzii
M21/2]
gi|158444618|gb|EDP21622.1| DNA-binding regulatory protein, YebC/PmpR family [Faecalibacterium
prausnitzii M21/2]
gi|295104775|emb|CBL02319.1| conserved hypothetical protein TIGR01033 [Faecalibacterium
prausnitzii SL3/3]
Length = 245
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 14/212 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
V+ GGPNP SN+ LA ++ KAK + VP D ++R IK+A + F YE YG GGV+
Sbjct: 36 VRDGGPNPASNSKLADLIAKAKRMSVPNDNIQRIIKKAEGGDKTEFEAITYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ A +R GG + G V F F + V++I D D D+ + A
Sbjct: 96 VMVETLTDNRNRTAADLRHYFDKNGGNLGAMGCVAFLFNQKGVIDISLEDKDADEAMMDA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAED D ED AE V + +NY+ + L E G +D+ + ++P
Sbjct: 156 LDAGAEDF--------DASEDAAE----VTTDPENYSAVVKALEEKGYEILSDDLA-MVP 202
Query: 200 ITTIEVDD-EAMELNKELIAKLLELDDVDAVY 230
+TT + D + ++ +L+ L + DDV V+
Sbjct: 203 MTTTRLTDPDQLKQMGKLLDSLEDNDDVQNVW 234
>gi|163840744|ref|YP_001625149.1| hypothetical protein RSal33209_2002 [Renibacterium salmoninarum
ATCC 33209]
gi|189039430|sp|A9WSE7.1|Y2002_RENSM RecName: Full=Probable transcriptional regulatory protein
RSal33209_2002
gi|162954220|gb|ABY23735.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
33209]
Length = 251
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 124/240 (51%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I G KS+ + +K GGP+ N L + KAK+ VP D ++R I
Sbjct: 11 KHKKAVIDGRRAKSFAKLIKNIEVAARVGGPDMAGNPALELAVTKAKKTSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR S + EA + +YE YG G +I++E LTD R+ + VR V GG MADPGS
Sbjct: 71 KRGSGQLGEAIDYQTIMYEGYGPQGTAILIECLTDNKNRAASEVRLAVSRNGGNMADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R +V++ + +D LL LDAGAE+V N ++V+S
Sbjct: 131 VSYLFARKGIVSLPQNELSEDDLLMAVLDAGAEEVKSEGEN------------FEVISEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ I + L EAGI ++TD+ +P +E+D E + L L +LDDV VY++
Sbjct: 179 QDLPAIRSALTEAGIEYDTDDAG-FVPSMQVELDVENAKKFMRLYDALEDLDDVQNVYSN 237
>gi|218961235|ref|YP_001741010.1| hypothetical protein CLOAM0931 [Candidatus Cloacamonas
acidaminovorans]
gi|167729892|emb|CAO80804.1| conserved hypothetical protein [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 250
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
K GG +P N L + AKE ++PK+ +ER IKR + E A+ E +YE YG+ GV
Sbjct: 36 AKTGGGDPDMNPRLRTAINTAKENNMPKENIERAIKRGTGEIEGAAYEEVIYEGYGHNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
IVVEV+TD RSV+ +R GG +A+ GSV + F + N+ D+D+ +
Sbjct: 96 GIVVEVMTDNKKRSVSELRHTFSKYGGNLAETGSVAWNFEQKGFFNVPSAGLDEDEFMLK 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL- 197
AL+AGA+DV +NED+ D V ++ ++ + L + G P +EL
Sbjct: 156 ALEAGADDV---ELNEDNFD---------VYTSPTDFHIVIGNLEKEGYPIHN---AELT 200
Query: 198 -LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TI VDD+ E LI L ELDDV VY +
Sbjct: 201 RVPKNTIAVDDDTAEKLMRLIESLEELDDVQKVYAN 236
>gi|256825360|ref|YP_003149320.1| hypothetical protein Ksed_15350 [Kytococcus sedentarius DSM 20547]
gi|256688753|gb|ACV06555.1| conserved hypothetical protein TIGR01033 [Kytococcus sedentarius
DSM 20547]
Length = 251
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +PT N L ++KAK+ VP D +ER +KR S E G + YE Y GG
Sbjct: 36 ARTGGADPTGNPTLFDAIQKAKKNSVPNDNIERAVKRGSGAEAGGAEYQALTYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V +++E L+D R+V VR + GG+MAD GSV F F R V+ + + +D+L++
Sbjct: 96 VGLIIECLSDNKNRAVMEVRTALTRNGGQMADSGSVTFNFHRKGVIAVSGGEKSEDELME 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
I L+AGAE++ D E + SD D+ T L++A + +++ + ++
Sbjct: 156 IVLEAGAEEMT-----------DLGEGFEITTEPSD-MVDVRTALQQADVDYDSAD-VKM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
LPIT IE+D + LI L + DDV VY
Sbjct: 203 LPITPIELDADGARKLFRLIDALEDCDDVQEVYA 236
>gi|348026291|ref|YP_004766096.1| hypothetical protein MELS_1047 [Megasphaera elsdenii DSM 20460]
gi|341822345|emb|CCC73269.1| UPF0082 protein HMPREF0889_0963 [Megasphaera elsdenii DSM 20460]
Length = 244
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 119/219 (54%), Gaps = 24/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GGP+P N L L+KAKE ++PKD NIKRA +KG A + E VYE YG
Sbjct: 36 VRMGGPDPVGNMRLKLALQKAKENNIPKD----NIKRAIQKGAGATEGQNYEEIVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ V VLTD R+ AAVR GG + G V + F + + AD+DQ
Sbjct: 92 PAGVAVTVNVLTDNRNRAAAAVRHEFSKSGGNLGATGCVSWMFHNTGIFVVNRDQADEDQ 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
++++ALDAGA+DV +DED Y++++T + + + L + I ET++
Sbjct: 152 IMEVALDAGADDV-------KVSDED-----YEIITTPEAFDAVEKALADNNI--ETEHA 197
Query: 195 S-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
S ++P TI++ E E + + L ELDDV VY +
Sbjct: 198 SITMVPENTIKLTGEDAEKMERFVDALDELDDVQDVYHN 236
>gi|313115677|ref|ZP_07801132.1| conserved hypothetical protein TIGR01033 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622004|gb|EFQ05504.1| conserved hypothetical protein TIGR01033 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 267
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 116/212 (54%), Gaps = 14/212 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
V+ GGPNP SN+ LA ++ KAK + VP D ++R IK+A + + YE YG GGV+
Sbjct: 58 VRTGGPNPASNSKLADLIAKAKRMSVPNDNIQRIIKKAEGGDKTEYEAITYEGYGPGGVA 117
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ A +R GG + G V F F + V++I D D D+ + A
Sbjct: 118 VMVETLTDNRNRTAADLRHYFDKNGGNLGAMGCVGFLFSQKGVIDISLEDKDADEAMMDA 177
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAED D ED AE + + +NY+ + + E G +D+ + ++P
Sbjct: 178 LDAGAEDF--------DASEDAAE----ITTDPENYSAVVKAMEEKGYEILSDDLA-MVP 224
Query: 200 ITTIEVDD-EAMELNKELIAKLLELDDVDAVY 230
+TT + D + ++L +L+ L + DDV V+
Sbjct: 225 MTTTRLTDPDQLKLMGKLLDALEDNDDVQNVW 256
>gi|325274572|ref|ZP_08140630.1| hypothetical protein G1E_15175 [Pseudomonas sp. TJI-51]
gi|324100299|gb|EGB98087.1| hypothetical protein G1E_15175 [Pseudomonas sp. TJI-51]
Length = 248
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 18/236 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + K+GGP+P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGTNESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L++ A++A A+DV+ NED + ++V ++ +++
Sbjct: 134 FERKGQLSFA-PGVDEDALMEAAMEADADDVV---ANEDGS--------FEVFTSFNSFY 181
Query: 177 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ T L EAG D + P T+ E+D E E +LI L +LDDV VY++
Sbjct: 182 AVRTALEEAGFK-AADAEIVMQPTTSAELDHEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|332290902|ref|YP_004429511.1| hypothetical protein Krodi_0256 [Krokinobacter sp. 4H-3-7-5]
gi|332168988|gb|AEE18243.1| protein of unknown function DUF28 [Krokinobacter sp. 4H-3-7-5]
Length = 242
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 128/234 (54%), Gaps = 17/234 (7%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK +++PKD VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKAVNMPKDNVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G++I+VE TD TR+VA VR C G + GSV+F F
Sbjct: 73 DKSQGDYKEVIFEGYAQHGIAILVETATDNNTRTVANVRAAFNKCDGNLGTSGSVVFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
+ D +++ +D GAE+V E DED Y + ++Y I
Sbjct: 133 HTCTFRVNAEGQDVEEIELEFIDFGAEEVFE--------DEDGIHIY----APFESYGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNKELIAKLLELDDVDAVYT 231
+ L E GI ++G + +P T ++ +E ++NK LI KL E DDV V++
Sbjct: 181 QSALEEKGIEI-LESGFDRIPQVTKQLTPEEEADVNK-LIDKLDEDDDVQNVFS 232
>gi|295100668|emb|CBK98213.1| conserved hypothetical protein TIGR01033 [Faecalibacterium
prausnitzii L2-6]
Length = 245
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 116/212 (54%), Gaps = 14/212 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
V+ GGPNP SN+ LA ++ KAK + VP D ++R IK+A + + YE YG GGV+
Sbjct: 36 VRTGGPNPASNSKLADLIAKAKRMSVPNDNIQRIIKKAEGGDKTEYEAITYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ A +R GG + G V F F + V++I D D D+ + A
Sbjct: 96 VMVETLTDNRNRTAADLRHYFDKNGGNLGAMGCVGFLFSQKGVIDISLEDKDADEAMMDA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAED D ED AE + + +NY+ + + E G +D+ + ++P
Sbjct: 156 LDAGAEDF--------DAGEDAAE----ITTDPENYSAVVKAMEEKGYEILSDDLA-MVP 202
Query: 200 ITTIEVDD-EAMELNKELIAKLLELDDVDAVY 230
+TT + D + ++L +L+ L + DDV V+
Sbjct: 203 MTTTRLTDPDQLKLMGKLLDALEDNDDVQNVW 234
>gi|296110560|ref|YP_003620941.1| hypothetical protein LKI_02145 [Leuconostoc kimchii IMSNU 11154]
gi|339490347|ref|YP_004704852.1| hypothetical protein LGMK_00835 [Leuconostoc sp. C2]
gi|295832091|gb|ADG39972.1| hypothetical protein LKI_02145 [Leuconostoc kimchii IMSNU 11154]
gi|338852019|gb|AEJ30229.1| hypothetical protein LGMK_00835 [Leuconostoc sp. C2]
Length = 240
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG P N L V+EKAK ++PKD ++R + +AS G + F E YE YG GV+
Sbjct: 36 AKAGGAEPDLNASLRLVIEKAKSANMPKDNIQRALDKASGAGGKKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLL 136
I+VE TD I R+V+++R K GG + GSV F+F R + I F D D+D +L
Sbjct: 96 ILVETSTDNINRTVSSIRNSFKHFGGALGTSGSVAFQFDRKGYLAIDREAFPDLDEDTIL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGA+DV +DD +++ + ++ + L EAG F D+
Sbjct: 156 EAALEAGADDV----QTQDDV--------FEIFTQPSDFQQVEGALTEAGYAF-ADSEVT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + + D+ E +L+ +L E +DV AVYT
Sbjct: 203 MISQNPMTISDDDREKLDKLVDELEENEDVLAVYT 237
>gi|407718546|ref|YP_006795951.1| hypothetical protein C270_05205 [Leuconostoc carnosum JB16]
gi|407242302|gb|AFT81952.1| hypothetical protein C270_05205 [Leuconostoc carnosum JB16]
Length = 241
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V++KAK ++PKD ++R + +AS G + F E YE YG GV+
Sbjct: 36 AKAGGADPDLNASLRLVVDKAKAANMPKDNIQRALDKASGAGGQKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLL 136
++VE TD I R+V+++R K GG + GSV F+F R + I F D D+D +L
Sbjct: 96 VLVETSTDNINRTVSSIRNSFKHYGGALGTSGSVAFQFDRKGYLAIDREAFPDLDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV + +++ + S ++ + L EAG FE D
Sbjct: 156 EAALEAGAEDV------------QTQDEVFEIYTESGDFQTVEASLTEAGYIFE-DAEVT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + + DE E +L+ +L E +DV AVYT
Sbjct: 203 MIAQNPMVISDEDREKLDKLVDELEENEDVLAVYT 237
>gi|268317946|ref|YP_003291665.1| hypothetical protein Rmar_2399 [Rhodothermus marinus DSM 4252]
gi|345304226|ref|YP_004826128.1| hypothetical protein Rhom172_2398 [Rhodothermus marinus
SG0.5JP17-172]
gi|262335480|gb|ACY49277.1| protein of unknown function DUF28 [Rhodothermus marinus DSM 4252]
gi|345113459|gb|AEN74291.1| protein of unknown function DUF28 [Rhodothermus marinus
SG0.5JP17-172]
Length = 248
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 18/225 (8%)
Query: 11 WGRKS--YLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIE 67
W R S + ++GG +P +N LA +E+A+ ++PK+ +ER IKR + + Q E ++E
Sbjct: 25 WARLSRDIIVAAREGGGDPEANPRLAQAIERARAENMPKENIERAIKRGTGEIQGEDYVE 84
Query: 68 KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF 127
YE Y GGV++ +E LTD R+V+ +R + GG + PGSV + F R V+ I
Sbjct: 85 VTYEGYAPGGVAVFIEALTDNTNRTVSEIRHLFTKAGGSLGQPGSVAYLFERKGVIEIPV 144
Query: 128 TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI 187
D+ +L ++ +AGAED+ +DDT + V + + ++D+ LR AGI
Sbjct: 145 EGHDELELFELVAEAGAEDL----TKDDDT--------FVVTTPVETFSDVLEALRSAGI 192
Query: 188 -PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
P E G + +P TT+ + E + L+ L DV VYT
Sbjct: 193 EPVEA--GLQRVPTTTVTLPPEEAKKVVALLEALEAHQDVQNVYT 235
>gi|399517453|ref|ZP_10759003.1| hypothetical protein Q5C_10070 [Leuconostoc pseudomesenteroides
4882]
gi|398647577|emb|CCJ67030.1| hypothetical protein Q5C_10070 [Leuconostoc pseudomesenteroides
4882]
Length = 240
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V+EKAK ++PKD ++R + +AS G F E YE YG GV+
Sbjct: 36 AKAGGADPEMNASLRLVVEKAKAANMPKDNIQRALDKASGAGGAKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLL 136
++VE TD I R+V+ VR K GG + GSV F+F R + I + D D+D +L
Sbjct: 96 VLVEASTDNINRTVSTVRNSFKHAGGALGTSGSVAFQFDRKGYLAIDREAYPDLDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV A+ +++ + ++ + L EAG FE D
Sbjct: 156 EAALEAGAEDV------------QTADEVFEIYTDPADFQAVEGALTEAGFVFE-DAEIT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + + DE E L+ +L E +DV AVYT
Sbjct: 203 MIAQNPMTITDEDREKLDHLVDELEENEDVLAVYT 237
>gi|420151971|ref|ZP_14659047.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
massiliensis F0489]
gi|394765670|gb|EJF47036.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
massiliensis F0489]
Length = 252
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 112/215 (52%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D + R +KR S E G + +YE YG G
Sbjct: 36 ARTGGADPAGNPTLFDAIQKAKKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPAG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R VV I D D+D +L
Sbjct: 96 VAFLVECLTDNRNRAASDVRVAFTRTGGSLADPGSVAYNFSRKGVVEIAKADGIDEDTIL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
LDAGAE+V+E P ++V+S S + + + EAG+ +++ S+
Sbjct: 156 MAVLDAGAEEVLEGP------------ESFEVISDSSDLIAVRNAVTEAGMEYDSAE-SQ 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
L T +EVD + LI L +LDDV V+T
Sbjct: 203 FLAGTKVEVDLDGARKVMRLIDALEDLDDVQNVFT 237
>gi|325266856|ref|ZP_08133527.1| YebC like protein [Kingella denitrificans ATCC 33394]
gi|324981597|gb|EGC17238.1| YebC like protein [Kingella denitrificans ATCC 33394]
Length = 242
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 17/217 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGG 77
K+GG +P +N L +EKA + ++PKD V+R I + + +G E +IE YE YG GG
Sbjct: 36 AKQGGGDPNANPRLRLAMEKAWDANMPKDNVQRAIDKGTGNLEGVE-YIELRYEGYGIGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+++V+ +TD TR+VA VR GG + G V F F + +T+AD+D L++
Sbjct: 95 AAVMVDCMTDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGY--LLYTNADEDALME 152
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAEDVI DE E +V++ ++ ++ T L +AG E D +
Sbjct: 153 AALEAGAEDVI--------ADE---EGVIEVITAPTDWANVKTALEQAGFKAE-DGDVTM 200
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
P TT E+ E ++LI L +LDDV VYT +
Sbjct: 201 RPQTTTELSGAEAEKMQKLIDALEDLDDVQNVYTSAV 237
>gi|313891358|ref|ZP_07824974.1| DNA-binding regulatory protein, YebC/PmpR family [Dialister
microaerophilus UPII 345-E]
gi|329121411|ref|ZP_08250036.1| glucose-1-phosphate adenylyltransferase [Dialister micraerophilus
DSM 19965]
gi|313120133|gb|EFR43309.1| DNA-binding regulatory protein, YebC/PmpR family [Dialister
microaerophilus UPII 345-E]
gi|327469701|gb|EGF15168.1| glucose-1-phosphate adenylyltransferase [Dialister micraerophilus
DSM 19965]
Length = 240
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 22/217 (10%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-----QEAFIEKVYEVYGY 75
+ GG +P N L L KAK+ +VPK+ NI+RA KG E F E YE YG
Sbjct: 37 RMGGGDPVGNMRLKLALTKAKQNNVPKE----NIQRAIAKGIGATSGEGFEEMSYEGYGP 92
Query: 76 GGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQL 135
GGV+I+VE TD R+ A VR GG + PG V + F++ ++ + AD+D L
Sbjct: 93 GGVAIIVECSTDNKNRTAADVRYAFTHHGGSIGTPGCVGWMFKKKGIIIVDKEVADEDTL 152
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
+ +ALD+GAEDV E Y++++ D + ++ L + GI E+ S
Sbjct: 153 MLLALDSGAEDV------------QAHEEVYEIITEPDAFIAVSEALEKEGIEVESSEVS 200
Query: 196 ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T+ +D E E +++I L E+DDV VY +
Sbjct: 201 -MIPDNTVSLDGEKAESMQKMIEALEEIDDVQEVYHN 236
>gi|384083301|ref|ZP_09994476.1| hypothetical protein gproHI_08296 [gamma proteobacterium HIMB30]
Length = 247
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 119/214 (55%), Gaps = 17/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GG P N L A ++KA ++ KD ++R I R + G +E+ VYE YG GGV+
Sbjct: 37 KMGGGEPADNPRLRAAVDKALSANMTKDTIQRAIDRGAGGGDNDNVEELVYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLDI 138
++VEV+TD R+VA VR CGG + GSV + F +R +++ +AD+D +++
Sbjct: 97 VLVEVMTDNKNRTVAEVRHAFSKCGGNLGTDGSVAYLFTKRGQIL---IDNADEDLVMEA 153
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
ALDAGAEDVI +DD V +T ++ D+ L +GI + L+
Sbjct: 154 ALDAGAEDVI----GQDDG-------LIDVATTQNDVVDVKDALLASGIEIVSAE-VALV 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT E+D+E+ +LI L +LDDV VYT+
Sbjct: 202 PSTTAELDEESAPKVMKLIDMLEDLDDVQNVYTN 235
>gi|85817741|gb|EAQ38915.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
Length = 241
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 17/234 (7%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK +++PKD VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKAVNMPKDNVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G++I+VE TD TR+VA VR C G + GSV+F F
Sbjct: 73 DKSQGDYKEVIFEGYAQHGIAILVETATDNNTRTVANVRAAFNKCDGNLGTSGSVVFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
+ D D++ +D GAE+V + DED Y + +++ I
Sbjct: 133 HTCTFRVNAEGQDVDEIELEFIDFGAEEVFQ--------DEDGIHIY----APFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLP-ITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ L E GI ++G + +P +T ++ ++NK LI KL E DDV V++
Sbjct: 181 QSALEEKGIEI-LESGFDRIPQVTKTLTPEQEADVNK-LIDKLEEDDDVQNVFS 232
>gi|332670541|ref|YP_004453549.1| hypothetical protein Celf_2032 [Cellulomonas fimi ATCC 484]
gi|332339579|gb|AEE46162.1| protein of unknown function DUF28 [Cellulomonas fimi ATCC 484]
Length = 251
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 117/216 (54%), Gaps = 19/216 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA----FIEKVYEVYGYG 76
+ GG +P N L ++KAK+ VP D ++R +KR S GQEA + +YE YG G
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRALKRGS--GQEAGGADYQTIMYEGYGPG 94
Query: 77 GVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLL 136
GV+++VE LTD R+ + VR GG+MADPGSV + F R VV + D+D ++
Sbjct: 95 GVAVLVECLTDNRNRAASDVRVAFTRNGGQMADPGSVSYIFSRKGVVIVPKEGTDEDAVM 154
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ LDAG E+V +D E ++V+S + + + T L+EAGI +++ +
Sbjct: 155 EAVLDAGGEEV-------NDLGES-----FEVLSEATDLVPVRTSLQEAGIEYDSAD-VV 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T IEVD E LI L + DDV VY +
Sbjct: 202 FWPSTQIEVDAEGARKILRLIDALEDSDDVQNVYAN 237
>gi|326693749|ref|ZP_08230754.1| hypothetical protein LargK3_08591 [Leuconostoc argentinum KCTC
3773]
Length = 240
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V+EKAK ++PKD ++R + +AS G + F E YE YG GV+
Sbjct: 36 AKAGGADPNMNPSLRLVVEKAKAANMPKDNIQRALDKASGAGGQKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK---FTDADKDQLL 136
I+VE TD I R+V+++R K GG + GSV F+F R + I F D D+D +L
Sbjct: 96 ILVEASTDNINRTVSSIRNSFKHFGGALGTSGSVAFQFDREGYLAINRADFPDLDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV + +++ +T+ ++ + + + A FE +
Sbjct: 156 EAALEAGAEDV------------QTQDEVFEIYTTAADFQAVESAMTAARYVFEEAEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ E+ DE E +L+ +L E +DV AVYT
Sbjct: 203 MIAQNPAEISDEDREKLDKLVDELEENEDVLAVYT 237
>gi|257439631|ref|ZP_05615386.1| glucose-1-phosphate adenylyltransferase [Faecalibacterium
prausnitzii A2-165]
gi|257197935|gb|EEU96219.1| DNA-binding regulatory protein, YebC/PmpR family [Faecalibacterium
prausnitzii A2-165]
Length = 245
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 14/212 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
V+ GGPNP SN+ LA ++ KAK + VP D ++R IK+A + F YE YG GGV+
Sbjct: 36 VRDGGPNPASNSKLADLIAKAKRMSVPNDNIQRIIKKAEGGDKTEFEAITYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ A +R GG + G V F F + V++I D D D+ + A
Sbjct: 96 VMVETLTDNRNRTAADLRHYFDKNGGNLGAMGCVAFLFSQKGVIDISLEDKDADEAMMDA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAED D E ++ + +NY+ + + E G +D+ + ++P
Sbjct: 156 LDAGAEDF------------DAGEEAAEITTDPENYSAVVKAMEEKGYEILSDDLA-MVP 202
Query: 200 ITTIEVDD-EAMELNKELIAKLLELDDVDAVY 230
+TT + D + ++ +L+ L + DDV V+
Sbjct: 203 MTTTRLTDPDQLKAMGKLLDALEDNDDVQNVW 234
>gi|339497661|ref|ZP_08658637.1| hypothetical protein LpseK3_16109 [Leuconostoc pseudomesenteroides
KCTC 3652]
Length = 240
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V+EKAK ++PKD ++R + +AS G F E YE YG GV+
Sbjct: 36 AKAGGADPEMNASLRLVVEKAKAANMPKDNIQRALDKASGAGGAKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLL 136
++VE TD I R+V+ VR K GG + GSV F+F R + I + + D+D +L
Sbjct: 96 VLVEASTDNINRTVSTVRNSFKHAGGALGTSGSVAFQFDRKGYLAIDREAYPNLDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV A+ +++ + ++ + L EAG FE D
Sbjct: 156 EAALEAGAEDV------------QTADEVFEIYTDPADFQTVEGALTEAGFVFE-DAEIT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + + DE E L+ +L E +DV AVYT
Sbjct: 203 MIAQNPMTITDEDREKLDHLVDELEENEDVLAVYT 237
>gi|104783075|ref|YP_609573.1| hypothetical protein PSEEN4095 [Pseudomonas entomophila L48]
gi|95112062|emb|CAK16789.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 250
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 18/237 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + K+GGP+P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGTNESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTDGSVAYL 133
Query: 117 F-RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 175
F R+ ++ ++D L++ AL+AGA+DV+ NED + + V ++ ++
Sbjct: 134 FERKGQISFAAELKVEEDALMEAALEAGADDVVN---NEDGS--------FDVFTSFSSF 182
Query: 176 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L E G +D + P T+ E+D E E +LI L +LDDV VY++
Sbjct: 183 YAVRNALEEGGFK-ASDAEIVMQPTTSAELDQEGAEKVLKLIDMLEDLDDVQNVYSN 238
>gi|304440194|ref|ZP_07400084.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371243|gb|EFM24859.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 246
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-SEKGQEAFIEKVYEVYGYGGV 78
K+GGP+P N L ++KAK ++P D +ER IK+ E GQ+ F E YE YG G+
Sbjct: 36 AKEGGPDPEYNASLKVAIDKAKAENMPNDNIERAIKKGCGELGQDNFEEITYEGYGPSGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLD 137
+++V+ LTD R+ VR GG + PG V F F ++ ++ +K + D+++ +
Sbjct: 96 AVMVKCLTDNRNRTAPEVRHAFDKNGGNLGQPGCVSFMFEKKGQLGVLKHENVDEEEFML 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+ALD GAEDVI D D A ++++++ ++Y ++ L E G F +
Sbjct: 156 LALDLGAEDVI---------DRDEA---FEIITSPESYEEVRDGLEENGYEF-VQSDITF 202
Query: 198 LPITTIEVDDEA-MELNKELIAKLLELDDVDAVYTD 232
LP E+ DE ++L ++LI L + DDV VYT+
Sbjct: 203 LPSNYTELTDENDIKLMEKLIDTLEDNDDVQDVYTN 238
>gi|296129639|ref|YP_003636889.1| hypothetical protein Cfla_1793 [Cellulomonas flavigena DSM 20109]
gi|296021454|gb|ADG74690.1| protein of unknown function DUF28 [Cellulomonas flavigena DSM
20109]
Length = 251
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 19/216 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA----FIEKVYEVYGYG 76
+ GG +P N L ++KAK+ VP D ++R +KR S GQEA + +YE YG G
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRAVKRGS--GQEAGGADYQTIMYEGYGPG 94
Query: 77 GVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLL 136
GV+++VE LTD R+ + VR GG+MADPGSV + F R VV + D+D ++
Sbjct: 95 GVAVLVECLTDNRNRAASDVRVAFTRNGGQMADPGSVSYIFSRKGVVIVPKEGTDEDAVM 154
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ L+AG E+V D E+ ++V+S + + + T L+EAGI +++ +
Sbjct: 155 EAVLEAGGEEVT-----------DLGEQ-FEVLSEATDLVPVRTALQEAGIEYDSAD-VV 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T IEVD E LI L + DDV VY +
Sbjct: 202 FWPATQIEVDAEGARKILRLIDALEDSDDVQNVYAN 237
>gi|330717916|ref|ZP_08312516.1| hypothetical protein LfalK3_00115 [Leuconostoc fallax KCTC 3537]
Length = 241
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 119/217 (54%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V++KAK ++PKD ++R + +AS G F E YE YG GV+
Sbjct: 36 AKAGGADPEMNASLRLVVDKAKAANMPKDNIQRALDKASGAGGAKFEEVTYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLL 136
++VE TD I R+V+ VR K GG + GSV F+F R + I F + D+D +L
Sbjct: 96 VLVEASTDNINRTVSTVRNSFKHYGGSLGTSGSVAFQFDRKGYLAIDRTAFPELDEDTIL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV ++ +++ + ++ I + L EAG FE +
Sbjct: 156 EAALEAGAEDV------------QTSDEAFEIYTEPGDFQSIESALTEAGYSFEESEVTM 203
Query: 197 LL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ P+T + DD+ +L+K L+ +L + +DV AVYT
Sbjct: 204 IAQNPMTDLS-DDDQEKLDK-LVDELEDNEDVLAVYT 238
>gi|258646856|ref|ZP_05734325.1| glucose-1-phosphate adenylyltransferase [Dialister invisus DSM
15470]
gi|260404295|gb|EEW97842.1| glucose-1-phosphate adenylyltransferase [Dialister invisus DSM
15470]
Length = 244
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 117/218 (53%), Gaps = 22/218 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
+ GG +P N L L KAK+ +VPKD NI+RA KG A F E YE YG
Sbjct: 36 ARMGGGDPVGNMRLKLALTKAKQNNVPKD----NIQRAIAKGVGAASGAGFDEITYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GG +++VE TD R+ A VR GG + PG V + F++ ++ + AD+D
Sbjct: 92 PGGAAVIVECNTDNRNRAAADVRHAFTHHGGSIGTPGCVAWMFKKKGIIVVSKEAADEDT 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L+ IALDAGAEDV TD D +++ + +++ ++ L + GI E
Sbjct: 152 LMMIALDAGAEDV--------STDGDS----FEITTAPEDFLTVSEALEKEGIAVEASEV 199
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P T+ ++ +A ++ +L ++L ELDDV VYT+
Sbjct: 200 T-MVPDNTVSLEGDAADVMNKLTSELEELDDVQDVYTN 236
>gi|117928553|ref|YP_873104.1| hypothetical protein Acel_1346 [Acidothermus cellulolyticus 11B]
gi|166200370|sp|A0LUK8.1|Y1346_ACIC1 RecName: Full=Probable transcriptional regulatory protein Acel_1346
gi|117649016|gb|ABK53118.1| protein of unknown function DUF28 [Acidothermus cellulolyticus 11B]
Length = 248
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GGP+P N LA + KA++ VP D +ER I+R + E G + +YE YG GGV++
Sbjct: 39 GGPDPNGNPTLADAIAKARDQSVPNDNIERAIRRGAGLEAGGTDWEPIIYEGYGPGGVAL 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
++E LTD R+ + VR + GG MADPGSV + F R +V + +D +L L
Sbjct: 99 LIECLTDNRNRAASEVRTTMTRNGGSMADPGSVAYLFNRKGIVIVPKEGRSEDDVLAAVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAE+V +D E ++VVS + T + L AGI +E+ + P
Sbjct: 159 DAGAEEV-------NDLGES-----FEVVSEPGDLTRVRDALSAAGIRYESAD-VAWQPT 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +DD+ LI L + DDV AV+ +
Sbjct: 206 VNVPLDDDTARKVLRLIEALEDCDDVQAVWAN 237
>gi|408374573|ref|ZP_11172258.1| hypothetical protein A11A3_10771 [Alcanivorax hongdengensis A-11-3]
gi|407765531|gb|EKF73983.1| hypothetical protein A11A3_10771 [Alcanivorax hongdengensis A-11-3]
Length = 244
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K GGP P N L A ++KA ++ KD ++R IKR + +E++ YE YG GGV
Sbjct: 36 AKMGGPEPADNPRLRAAMDKALGQNMTKDTIDRAIKRGAGGDDGGNMEEITYEGYGKGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE +TD + R+VA VR G + GSV F F + + + D+++L+++
Sbjct: 96 AVLVETMTDNVNRTVAEVRHAFSKFAGNLGTSGSVAFLFTKRGEIFFE-PGVDEEKLMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD-NYTDITTKLREAGIPFETDNGSEL 197
AL+AGAEDV E+ + + V++T D + ++ LREAG+ F D +
Sbjct: 155 ALEAGAEDV-----------EEMNDGSFLVITTPDKQFGEVVDALREAGLEF-ADAEVTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T E+D + E +++I L +LDDV VYT+
Sbjct: 203 HPSTEAEMDADTAETVQKMIDMLEDLDDVQNVYTN 237
>gi|386775359|ref|ZP_10097737.1| hypothetical protein BparL_16320 [Brachybacterium paraconglomeratum
LC44]
Length = 252
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 115/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GGP+P+ N L ++KAK+ VP D ++R +KR + +YE Y GGV
Sbjct: 37 RMGGPDPSGNPTLYDAIQKAKKTSVPNDNIDRAVKRGGGLDGGGVDYETLMYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+V+ VR GG MAD GSV + F R VV + + +D LL++
Sbjct: 97 AVLVECLTDNKNRAVSEVRLAFNRNGGNMADSGSVSYLFERRGVVTVAKGENTEDDLLEV 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE++ D E ++++S + + + T L+EAGI +E+ ++ +
Sbjct: 157 VLDAGAEEI-----------NDEGET-FEILSEATDVVAVRTALQEAGIDYESAE-AQFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P VD E + LI L + DDV AVY++
Sbjct: 204 PTMRTPVDLEGAQKALRLIDALEDSDDVQAVYSN 237
>gi|199597322|ref|ZP_03210753.1| hypothetical protein LRH_05549 [Lactobacillus rhamnosus HN001]
gi|258507981|ref|YP_003170732.1| hypothetical protein LGG_00986 [Lactobacillus rhamnosus GG]
gi|258539235|ref|YP_003173734.1| hypothetical protein LC705_01044 [Lactobacillus rhamnosus Lc 705]
gi|385827663|ref|YP_005865435.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|385834892|ref|YP_005872666.1| hypothetical protein LRHK_1024 [Lactobacillus rhamnosus ATCC 8530]
gi|418070273|ref|ZP_12707548.1| hypothetical protein R0011_00685 [Lactobacillus rhamnosus R0011]
gi|421769430|ref|ZP_16206137.1| hypothetical protein LRHMDP2_1475 [Lactobacillus rhamnosus LRHMDP2]
gi|421772287|ref|ZP_16208943.1| hypothetical protein LRHMDP3_1373 [Lactobacillus rhamnosus LRHMDP3]
gi|199591838|gb|EDY99913.1| hypothetical protein LRH_05549 [Lactobacillus rhamnosus HN001]
gi|257147908|emb|CAR86881.1| Integrase [Lactobacillus rhamnosus GG]
gi|257150911|emb|CAR89883.1| Integrase [Lactobacillus rhamnosus Lc 705]
gi|259649308|dbj|BAI41470.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
gi|355394383|gb|AER63813.1| conserved hypothetical protein [Lactobacillus rhamnosus ATCC 8530]
gi|357539693|gb|EHJ23710.1| hypothetical protein R0011_00685 [Lactobacillus rhamnosus R0011]
gi|411183855|gb|EKS50990.1| hypothetical protein LRHMDP3_1373 [Lactobacillus rhamnosus LRHMDP3]
gi|411184561|gb|EKS51693.1| hypothetical protein LRHMDP2_1475 [Lactobacillus rhamnosus LRHMDP2]
Length = 243
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+GGP+P+ N L V++KAK ++PKD ++R + +AS++ + E YE YG GGV+
Sbjct: 36 AKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRALDKASDRDAANYDEVTYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ ++VR + GG MA G+V + F R V++ + D D+DQ+L+
Sbjct: 96 ILVEALTDNRNRTSSSVRVAITRHGGNMAAAGAVSYMFDRKGYLVISREAYDVDEDQMLE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAED+ DD Y++ + + + L E G F N +
Sbjct: 156 DALEAGAEDM----QTSDDA--------YEIYTDPKEFAQVRDALEEKGYKF-VQNELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P + + +E + +I +L + DDV VYT
Sbjct: 203 VPQNLTPIPKDKVEQFQAMIDQLEDDDDVQEVYT 236
>gi|308803867|ref|XP_003079246.1| YebC-related (ISS) [Ostreococcus tauri]
gi|116057701|emb|CAL53904.1| YebC-related (ISS), partial [Ostreococcus tauri]
Length = 374
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 27/236 (11%)
Query: 11 WGR--KSYLRNVKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIE 67
+GR K ++ VK+GG +P +N L +L+ A+ +VP+D+++RNIK+A E + E
Sbjct: 53 YGRYGKLIVQTVKQGGSADPVANVALGRLLKAAQNANVPRDLIDRNIKKAQEGKTGDYFE 112
Query: 68 KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV----- 122
YEVYG GGV IV EVLTD + R+ R GG + RAR
Sbjct: 113 LTYEVYGAGGVGIVCEVLTDSVNRAAGEKRR-----GGDESRRXXXXXXXTRARRRKPAE 167
Query: 123 ----VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
+ + ++ + +IA+++GAED+ ED D VV D++ +
Sbjct: 168 DGPNRGASWFNFNRRGVFEIAMESGAEDIAPRSDGEDGWD---------VVCQLDDFAAV 218
Query: 179 TTKLREAGIPF-ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
R+AG+ + + G + +P+ IEV DE +N++++ LL LDDVDAVYT +
Sbjct: 219 QDACRDAGLKVNDEETGLKCIPVAEIEVSDEDAAINEKIVDALLALDDVDAVYTQE 274
>gi|229551834|ref|ZP_04440559.1| protein of hypothetical function DUF28 [Lactobacillus rhamnosus
LMS2-1]
gi|423078975|ref|ZP_17067650.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
rhamnosus ATCC 21052]
gi|229314778|gb|EEN80751.1| protein of hypothetical function DUF28 [Lactobacillus rhamnosus
LMS2-1]
gi|357548432|gb|EHJ30296.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
rhamnosus ATCC 21052]
Length = 249
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+GGP+P+ N L V++KAK ++PKD ++R + +AS++ + E YE YG GGV+
Sbjct: 42 AKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRALDKASDRDAANYDEVTYEGYGPGGVA 101
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ ++VR + GG MA G+V + F R V++ + D D+DQ+L+
Sbjct: 102 ILVEALTDNRNRTSSSVRVAITRHGGNMAAAGAVSYMFDRKGYLVISREAYDVDEDQMLE 161
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAED+ DD Y++ + + + L E G F N +
Sbjct: 162 DALEAGAEDM----QTSDDA--------YEIYTDPKEFAQVRDALEEKGYKF-VQNELTM 208
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P + + +E + +I +L + DDV VYT
Sbjct: 209 VPQNLTPIPKDKVEQFQAMIDQLEDDDDVQEVYT 242
>gi|120403556|ref|YP_953385.1| hypothetical protein Mvan_2570 [Mycobacterium vanbaalenii PYR-1]
gi|166228405|sp|A1T879.1|Y2570_MYCVP RecName: Full=Probable transcriptional regulatory protein Mvan_2570
gi|119956374|gb|ABM13379.1| protein of unknown function DUF28 [Mycobacterium vanbaalenii PYR-1]
Length = 251
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 112/215 (52%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR S E G + YE YG G
Sbjct: 36 ARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERARKRGSGEEAGGADWQTITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++VE LTD R+ VR + GG MADPGSV + F R V+ ++ D +D +L
Sbjct: 96 VAVLVECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFTRKGVITLEKNDLTEDDVLA 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAEDV D D ++++S + + T L++AGI +E+ S
Sbjct: 156 AVLDAGAEDV------NDLGDS------FEIISEPTDLVAVRTALQDAGIDYESAEAS-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD EA +L+ L + DDV VYT+
Sbjct: 203 QPSVTVPVDLEAARKVLKLVDALEDSDDVQDVYTN 237
>gi|238854833|ref|ZP_04645163.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|260664120|ref|ZP_05864973.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US]
gi|313472336|ref|ZP_07812828.1| glucose-1-phosphate adenylyltransferase [Lactobacillus jensenii
1153]
gi|238832623|gb|EEQ24930.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|239529808|gb|EEQ68809.1| glucose-1-phosphate adenylyltransferase [Lactobacillus jensenii
1153]
gi|260562006|gb|EEX27975.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US]
Length = 242
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PKD ++R IK+A E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPALRLVMDKARAANMPKDNIQRAIKKAEGGSDEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
++VE LTD R+ +VR GG M GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VLVEALTDNKNRTATSVRTAFTRNGGSMGSTGSVAYMFDRKGYIVIDRSTTDADEDQMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAGA+D+ DD Y++ + + +T + L +AG D +
Sbjct: 156 DVMDAGADDL----QTSDDA--------YEIYTDAKEFTGVRDALEKAGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E + LI L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFEHLIDALEDDDDVSNVYT 236
>gi|332981535|ref|YP_004462976.1| hypothetical protein Mahau_0956 [Mahella australiensis 50-1 BON]
gi|332699213|gb|AEE96154.1| protein of unknown function DUF28 [Mahella australiensis 50-1 BON]
Length = 250
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
V+ GG NP +N+ L + KAK ++P D +ER IK+A+ + E VYE YG GGV
Sbjct: 36 VRHGGDNPEANSTLRDAIAKAKANNMPNDTIERIIKKAAGALDSVNYEELVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR--ARVVNIKFTDADKDQLL 136
+I+VE +D R+ + +R + GG + + G VM+ F R VV+ D D+D +L
Sbjct: 96 AIIVEATSDNRNRTSSDIRHLFDKSGGSLGETGCVMWMFDRKGVLVVDRDAVDIDEDDML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
IAL+AGAED+I +DD Y++ + +++ + L + GIPF + E
Sbjct: 156 MIALEAGAEDLI----TQDDA--------YEIRTAPEDFASVRDTLEKQGIPFISAQ-LE 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L+P T+ D EA LI KL + DDV VY +
Sbjct: 203 LIPKVTVSPDVEAARKVLNLIDKLDDHDDVQNVYHN 238
>gi|325295278|ref|YP_004281792.1| yeeN [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065726|gb|ADY73733.1| UPF0082 protein yeeN [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 247
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 118/214 (55%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
++GG +P +N L A +E+A++ ++PK+ +ER IKR + E EA+ E YE YG GGV
Sbjct: 36 AREGGGDPETNPRLRAAIERARKFNMPKENIERAIKRGTGEIAGEAYEEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ LTD R+ A VR GG + G V + F R ++ I + D+D ++
Sbjct: 96 AIIVKCLTDNRNRTAAEVRHAFSKHGGNLGTSGCVSWMFERKGIITIPAENYDEDTVMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
++AGA+DV+ + E Y+ V + + + D+ + +AG+ E ++ +L+
Sbjct: 156 VIEAGADDVV------------KEESYFVVYTQAQDLEDVRKAILDAGLEIE-ESKLDLI 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T V+ E +L+ L +LDDV VY++
Sbjct: 203 PQNTTRVEGETALKVLKLLEALEDLDDVQEVYSN 236
>gi|302385988|ref|YP_003821810.1| hypothetical protein Closa_1590 [Clostridium saccharolyticum WM1]
gi|302196616|gb|ADL04187.1| protein of unknown function DUF28 [Clostridium saccharolyticum WM1]
Length = 242
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 23/220 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P +N+ L ++ KAK ++P D +ER IK+A+ + G + YE YG GV
Sbjct: 36 VKEGGPDPANNSRLRDIIAKAKANNMPNDTIERGIKKAAGDAGSVNYETITYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + PG V F F + +++ + + D D+L+
Sbjct: 96 AIIVDTLTDNKNRTAANVRNAFTKGGGNVGTPGCVSFMFDKKGQIIIDKEECEMDPDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++LDAGAED E E+D+ ++V++ + ++ + L AG+P + G
Sbjct: 156 MVSLDAGAEDFAE----EEDS--------FEVITGPEEFSSVREALEAAGVPM-VEAGVT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLEL----DDVDAVYTD 232
++P T +E+ DE L K + +LLEL DDV A Y +
Sbjct: 203 MIPQTWVELTDED-SLKK--MNRLLELLDAEDDVQATYHN 239
>gi|336320690|ref|YP_004600658.1| hypothetical protein Celgi_1579 [[Cellvibrio] gilvus ATCC 13127]
gi|336104271|gb|AEI12090.1| protein of unknown function DUF28 [[Cellvibrio] gilvus ATCC 13127]
Length = 251
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 117/217 (53%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA----FIEKVYEVYGY 75
+ GG +P N L ++KAK+ VP D ++R +KR S GQEA + +YE YG
Sbjct: 36 ARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRALKRGS--GQEAGGADYQTIMYEGYGP 93
Query: 76 GGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQL 135
GGV+++VE LTD R+ + VR GG+MADPGSV + F R VV + D+D +
Sbjct: 94 GGVAVLVECLTDNRNRAASDVRVAFTRNGGQMADPGSVSYLFSRKGVVIVPKEGTDEDAV 153
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
++ L+AG E+V D E+ ++V+S + + + T L+EAGI +++ +
Sbjct: 154 MEAVLEAGGEEVT-----------DLGEQ-FEVLSEATDLVPVRTALQEAGIEYDSAD-V 200
Query: 196 ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T IEVD + LI L + DDV VY +
Sbjct: 201 VFWPATQIEVDADGARKILRLIDALEDSDDVQNVYAN 237
>gi|261367274|ref|ZP_05980157.1| glucose-1-phosphate adenylyltransferase [Subdoligranulum variabile
DSM 15176]
gi|282570876|gb|EFB76411.1| DNA-binding regulatory protein, YebC/PmpR family [Subdoligranulum
variabile DSM 15176]
Length = 245
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 107/197 (54%), Gaps = 15/197 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG NP SN+ LAA++ KAK VP D ++R IKRA E G +A E + YE YG GGV
Sbjct: 36 VKEGGSNPASNSKLAALITKAKANSVPNDNIQRIIKRA-EGGDKADYEAMTYEGYGPGGV 94
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ A +R GG + G V F F + V+ + D D D+L+
Sbjct: 95 AVMVETLTDNRNRTAANMRHYFDKFGGNLGQMGCVSFMFTQKGVIVVDLEDKDPDELMMD 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
ALDAGAED D E +V +T +N+T + L+ G F + + +++
Sbjct: 155 ALDAGAEDF------------DAGEEAAQVTTTPENFTAVCDALQNKGYTFISADVAQVP 202
Query: 199 PITTIEVD-DEAMELNK 214
TT D D+ ++ K
Sbjct: 203 ATTTTLTDPDQLTQMGK 219
>gi|366086385|ref|ZP_09452870.1| hypothetical protein LzeaK3_04013 [Lactobacillus zeae KCTC 3804]
Length = 243
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+GGP+P+ N L V++KAK ++PKD ++R + +AS++ + E YE YG GGV+
Sbjct: 36 AKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRALDKASDRDAANYDEVTYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ ++VR + GG MA G+V + F R V++ + D D+DQ+L+
Sbjct: 96 ILVEALTDNRNRTSSSVRVAITRHGGNMAAAGAVSYMFDRKGYLVISREDFDVDEDQMLE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAED+ ++ Y++ + + + L E G F N +
Sbjct: 156 DALEAGAEDM------------QTSDEAYEIYTDPKEFAQVRDALEEKGYKF-VQNELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P + + +E + +I +L + DDV VYT
Sbjct: 203 VPQNLTPIPKDKVEQFQAMIDQLEDDDDVQEVYT 236
>gi|300173549|ref|YP_003772715.1| hypothetical protein LEGAS_1248 [Leuconostoc gasicomitatum LMG
18811]
gi|333446582|ref|ZP_08481524.1| hypothetical protein LinhK3_05654 [Leuconostoc inhae KCTC 3774]
gi|299887928|emb|CBL91896.1| UPF0082 protein [Leuconostoc gasicomitatum LMG 18811]
Length = 240
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 117/215 (54%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG + N L V+EKAK ++PKD ++R + +AS G + F E YE YG GV+
Sbjct: 36 AKAGGADTYMNASLRLVVEKAKSANMPKDNIQRALDKASGAGGQKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK---FTDADKDQLL 136
++VE TD I R+V+++R K GG + GSV F+F R + I F++ D+D +L
Sbjct: 96 VLVETSTDNINRTVSSIRNSFKHFGGALGTSGSVAFQFDRKGYLAIDREIFSELDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV + +++ + +++ I L EAG F+ +
Sbjct: 156 EAALEAGAEDV------------QTQDAVFEIYTAPNDFQTIEGTLSEAGYVFDEAEVTM 203
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ I DD+ +L ++LI +L E +DV AVYT
Sbjct: 204 IAQNPMIISDDDREKL-EQLIDELEENEDVLAVYT 237
>gi|331084959|ref|ZP_08334046.1| hypothetical protein HMPREF0987_00349 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408659|gb|EGG88124.1| hypothetical protein HMPREF0987_00349 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 243
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 17/225 (7%)
Query: 12 GRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-Y 70
GR+ + + GGP+P +N+ L V+ KAK ++P D ++R+IK+A+ +G E + Y
Sbjct: 29 GRELAVAVKEGGGPDPANNSRLRDVIAKAKANNMPNDNIDRSIKKAAGEGSADNYEHITY 88
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKF-T 128
E YG G +I+V+ LTD R+ + VR G + PG V F F + +++ K
Sbjct: 89 EGYGPNGTAIIVKALTDNKNRTASNVRNAFTKGSGNVGTPGCVSFMFDEKGQIIIAKEDC 148
Query: 129 DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP 188
D D D+L+ +ALDAGAED +E E+D+ Y+V++ ++++++ KL EAGIP
Sbjct: 149 DMDSDELMMLALDAGAEDFVE----EEDS--------YEVLTVPEDFSEVRLKLEEAGIP 196
Query: 189 FETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVYTD 232
+ ++P T +E+ DE N + LLE DDV VY +
Sbjct: 197 MANAEVT-MIPQTWVELTDEQDLKNIQKTLDLLEEDDDVQEVYHN 240
>gi|392416146|ref|YP_006452751.1| DNA-binding regulatory protein, YebC/PmpR family [Mycobacterium
chubuense NBB4]
gi|390615922|gb|AFM17072.1| DNA-binding regulatory protein, YebC/PmpR family [Mycobacterium
chubuense NBB4]
Length = 251
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKNFAKLIKNIEVAARTGGGDPGGNPTLYDAIQKAKKNSVPNDNIERARKRGAGEEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ YE YG GV+++VE LTD R+ VR + GG MADPGSV + F R V
Sbjct: 81 ADWQTITYEGYGPNGVAVLVECLTDNRNRAAGEVRVAMTRNGGSMADPGSVSYLFSRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ D +D +L LDAGAEDV D E ++++S + + T L
Sbjct: 141 VTLEKNDLTEDDVLAAVLDAGAEDV-----------NDLGES-FEIISEPTDLVAVRTAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++AGI +E+ S P T+ VD +A +L+ L + DDV VYT+
Sbjct: 189 QDAGIDYESAEAS-FQPSVTVPVDVDAARKVLKLVDALEDSDDVQDVYTN 237
>gi|373455426|ref|ZP_09547259.1| YebC/PmpR family DNA-binding regulatory protein [Dialister
succinatiphilus YIT 11850]
gi|371934871|gb|EHO62647.1| YebC/PmpR family DNA-binding regulatory protein [Dialister
succinatiphilus YIT 11850]
Length = 244
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 22/218 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
+ GG +P N L L KAK+ +VPK+ NI+RA KG A F E YE YG
Sbjct: 36 ARMGGGDPVGNMRLKLALTKAKQNNVPKE----NIQRAIAKGVGAASGAGFDEVTYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GG +++VE TD R+ A +R GG + PG V + F++ + + AD+D
Sbjct: 92 PGGAAVIVECNTDNRNRAAADIRHAFTHHGGSVGTPGCVSWMFKKKGSIIVSKDAADEDT 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
++ +ALDAGAEDV NED Y++ +T + + ++ L + GIP E
Sbjct: 152 VMMVALDAGAEDV---SSNEDS---------YEITTTPEEFLTVSDALEKEGIPVEASEV 199
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P ++++ +A + L A+L +LDDV VYT+
Sbjct: 200 A-MVPDNYVKLEGDAAQTMAHLTAELEDLDDVQEVYTN 236
>gi|227499848|ref|ZP_03929941.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
gi|227217957|gb|EEI83230.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
Length = 243
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 18/222 (8%)
Query: 16 YLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVY 70
+ RN+ K+GG NP N L +EKAK ++P D +ER IK+A+ + + F+ +Y
Sbjct: 28 HARNITVAAKEGGTNPDYNPSLKTAIEKAKADNMPNDNIERAIKKAAGDDASDNFVRVIY 87
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E YG GGV+++V+ LTD R+ VR GG + GSVMF F R + ++
Sbjct: 88 EGYGPGGVAVIVDCLTDNKNRTAPDVRHAFDKNGGNLGTDGSVMFMFERKGDIIVEKNGK 147
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D D + AL+AG EDV E Y++ ++ ++ D KL+EAG E
Sbjct: 148 DFDDFMMDALEAGCEDVKEMG------------EYFEAITDVASFNDANDKLKEAGYKIE 195
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + S L ++ ++LNK LI L + DDV VYT+
Sbjct: 196 SADISYLANNMISVSEEHVVKLNK-LIDTLEDNDDVQEVYTN 236
>gi|256851420|ref|ZP_05556809.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260660841|ref|ZP_05861756.1| UPF0082 protein [Lactobacillus jensenii 115-3-CHN]
gi|297206234|ref|ZP_06923629.1| glucose-1-phosphate adenylyl transferase [Lactobacillus jensenii
JV-V16]
gi|256616482|gb|EEU21670.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260548563|gb|EEX24538.1| UPF0082 protein [Lactobacillus jensenii 115-3-CHN]
gi|297149360|gb|EFH29658.1| glucose-1-phosphate adenylyl transferase [Lactobacillus jensenii
JV-V16]
Length = 242
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PKD ++R IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPALRLVMDKARAANMPKDNIQRAIKKAEGGSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
++VE LTD R+ +VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VLVEALTDNKNRTATSVRTAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAGA+D+ DD Y++ + + +T + L +AG D +
Sbjct: 156 DVMDAGADDL----QTSDDA--------YEIYTDAKEFTGVRDALEKAGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E LI L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFAHLIDALEDDDDVSNVYT 236
>gi|380302290|ref|ZP_09851983.1| hypothetical protein BsquM_09436 [Brachybacterium squillarum M-6-3]
Length = 252
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 114/212 (53%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGVSI 80
GGP+P N L ++KAK+ VP D ++R +KR + +YE Y GGV++
Sbjct: 39 GGPDPAGNPTLFDAIQKAKKSSVPNDNIDRAVKRGGGLDGGGVDYQTLMYEGYAPGGVAL 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+VE LTD R+V+ VR GG MAD GSV + F R VV + +D+LL++ L
Sbjct: 99 LVECLTDNKNRAVSEVRLAFTRSGGNMADSGSVSYMFNRKGVVTLPAEGNTEDELLEVVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAE++ E E DT ++++S + + + T L+EAGI +++ ++ +P
Sbjct: 159 DAGAEEISE----EGDT--------FEIISEAADVVAVRTALQEAGIDYDSAE-AQFVPN 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
EVD + LI L + DDV VY++
Sbjct: 206 IRTEVDLDGARKVLRLIDALEDSDDVQNVYSN 237
>gi|289450184|ref|YP_003475615.1| YebC/PmpR family DNA-binding regulatory protein [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184731|gb|ADC91156.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 241
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 120/218 (55%), Gaps = 20/218 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK GGP+P SN+ L ++ KAK ++P D ++R+I +A+ G + E++ YE YG GV
Sbjct: 36 VKSGGPDPNSNSKLKDIIAKAKMNNMPNDNIQRSINKAAGIGSDTNYEEISYEGYGPAGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLD 137
+++VE LTD R+ A VR + GG M G V F F ++ ++ + D++ +L+
Sbjct: 96 AVIVEALTDNRNRTAADVRHLFDKFGGNMGTTGCVSFMFNKKGEIIISREEYPDEEAVLE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGA D V EDD Y V + ++Y + L+ AGI FE N L
Sbjct: 156 KALEAGAADF----VPEDDV--------YVVYTAPEDYDAVMADLQAAGIEFEDAN---L 200
Query: 198 LPI--TTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
P+ T + VDD E E ++LI L E DDV AVY +
Sbjct: 201 GPVADTKVTVDDPEVAEQLEKLIEGLEEHDDVMAVYHN 238
>gi|339448762|ref|ZP_08652318.1| hypothetical protein LfruK3_03188 [Lactobacillus fructivorans KCTC
3543]
Length = 244
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 116/219 (52%), Gaps = 16/219 (7%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
++ + K GG +P N L +EKA+E ++PKD V+R I +AS G F E YE Y
Sbjct: 30 RNLYQAAKAGGSDPEGNPQLRLEMEKAREANMPKDNVQRAIDKASGVGGAKFEEVTYEGY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF--TDAD 131
G GG +++V LTD R+ AA+R GG + GSV + F R + I TD D
Sbjct: 90 GPGGTAVMVSALTDNKNRTAAAIRSAFTHHGGSLGTDGSVSYMFDRKGFITISKSDTDDD 149
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
+D +L ALDAGA+D+ TD++ Y++++ + + L++AG ++
Sbjct: 150 EDSMLMAALDAGADDMKS-------TDDE-----YQILTDPASMASVRDALQKAG--YKL 195
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
D +L+P T EV + +E LI +L + DDV VY
Sbjct: 196 DAEVKLVPQNTTEVPSDKVEQYSGLIDELEDNDDVQDVY 234
>gi|149375109|ref|ZP_01892881.1| hypothetical protein MDG893_05809 [Marinobacter algicola DG893]
gi|149360473|gb|EDM48925.1| hypothetical protein MDG893_05809 [Marinobacter algicola DG893]
Length = 249
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 122/215 (56%), Gaps = 18/215 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
++GG NP N L V++KA ++ KD +ER ++R + G ++ E++ YE YG GGV+
Sbjct: 37 RQGGGNPDDNPRLRGVIDKALTANMKKDTIERAVERGAGDGDDSNYEELTYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I VEV+TD R+VA +R + GG + GSV + F + +++ + D+D+L++ A
Sbjct: 97 IFVEVMTDNRNRTVADIRHALNKMGGNLGTDGSVAYLFSKQGIISYS-PEMDEDRLMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAG-IPFETDNGS-EL 197
L AGAED+ ++ +++V+ D + D+ L E+G IP DN +
Sbjct: 156 LVAGAEDLAT-----------LSDGSFEIVTVPDQFLDVKQSLVESGLIP---DNAEVTM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TT+E+ +E E +LI L +LDDV VY +
Sbjct: 202 VPSTTVELGEEGAEPILKLIDMLEDLDDVQNVYHN 236
>gi|336323918|ref|YP_004603885.1| hypothetical protein Flexsi_1670 [Flexistipes sinusarabici DSM
4947]
gi|336107499|gb|AEI15317.1| UPF0082 protein yeeN [Flexistipes sinusarabici DSM 4947]
Length = 247
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 14/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
K GG +P N L L+KAK +++PKD V+R IK+ + +G EA E V YE YG GV+
Sbjct: 37 KLGGGDPEMNPRLRMALDKAKAVNLPKDNVDRAIKKGTGEGNEANFEDVMYEGYGPEGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V+ LTD R+V+ VR + G M + G V + F + V++I + +DQ++ +A
Sbjct: 97 ILVQALTDNKNRTVSEVRSTMAKKNGNMGEAGCVSWIFEKKGVISIPLNNVGEDQIMSLA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+DAGAEDV +T +D Y+++ +Y ++ + I +E + + P
Sbjct: 157 IDAGAEDV--------ETGDDS----YEIICDPADYEEVKKTIESESISYEYAEVT-MRP 203
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TTIEV + LI L +LDDV VY +
Sbjct: 204 KTTIEVKGNNAKKVINLIEALEDLDDVQEVYAN 236
>gi|51892142|ref|YP_074833.1| hypothetical protein STH1004 [Symbiobacterium thermophilum IAM
14863]
gi|60390892|sp|Q67QQ4.1|Y1004_SYMTH RecName: Full=Probable transcriptional regulatory protein STH1004
gi|51855831|dbj|BAD39989.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 242
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 16/222 (7%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEV 72
K ++ ++GGP+P +N +L + A++ ++P + ++R I R A E F E VYE
Sbjct: 28 KDIMKAAREGGPDPETNFLLKVAVAAARKANMPNENIQRAIARGAGLDSAERFDEIVYEG 87
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF--TDA 130
YG GGV+I++ ++TD R+ A VR + GG + + G V + F++ V+ I T
Sbjct: 88 YGPGGVAIMMNIVTDNRNRTAADVRHIFSKHGGSLGETGCVSWMFKKRGVIEIDRGETPI 147
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
+D L+ IALDAGAED++ T+ED Y + + D + +L AG+P E
Sbjct: 148 GEDDLMMIALDAGAEDLV--------TEEDS----YAIYTAPDALNQVMKQLEAAGVPVE 195
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P TT+ V E E L+ L E DDV VYT+
Sbjct: 196 KGEVA-MVPTTTVAVSGEEAEQLMRLLDLLEEHDDVQNVYTN 236
>gi|170723162|ref|YP_001750850.1| hypothetical protein PputW619_4001 [Pseudomonas putida W619]
gi|169761165|gb|ACA74481.1| protein of unknown function DUF28 [Pseudomonas putida W619]
Length = 248
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 18/236 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + K+GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAAKQGGGDPASNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGTNESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L++ A++A A+DV+ NED + ++V ++ +++
Sbjct: 134 FERKGQISFA-PGVDEDALMEAAMEADADDVV---ANEDGS--------FEVFTSFNSFY 181
Query: 177 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L EAG D + P T+ E+D E E +LI L +LDDV VY++
Sbjct: 182 AVRNALEEAGFK-AADAEIVMQPTTSAELDQEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|430749663|ref|YP_007212571.1| YebC/PmpR family DNA-binding regulatory protein [Thermobacillus
composti KWC4]
gi|430733628|gb|AGA57573.1| DNA-binding regulatory protein, YebC/PmpR family [Thermobacillus
composti KWC4]
Length = 248
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 22/222 (9%)
Query: 13 RKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE-KGQEAFIEKVYE 71
R+ Y+ + ++GGP P +N L + A+ +P + +ER IKRA+ G E + E +YE
Sbjct: 27 REIYM-HARRGGPYPEANLALKNAIANARAEQMPIENIERAIKRATATAGGEDYEEIIYE 85
Query: 72 VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF--RRARVVNIKFTD 129
YG GGV+I+V+ LTD R+ A VR + GG M + G V + F + VV+ + D
Sbjct: 86 GYGPGGVAIMVKCLTDNRNRTAADVRAIFNKRGGNMGESGCVSYLFDEKGLLVVSREAHD 145
Query: 130 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
D+D +L A+DAGAED+I VNED Y++++ ++ + L +G+ F
Sbjct: 146 IDEDSMLMAAIDAGAEDII---VNED---------LYEILTAPADFIKVKQALEGSGLTF 193
Query: 190 ETDNGSELLPITTIEVDDEAMELNKELIAKLLE-LDDVDAVY 230
E+ G LP TT++V+ E N E + K+++ DD D V+
Sbjct: 194 ES-AGIRWLPRTTVKVEGE----NAEKLLKMMDAFDDNDDVH 230
>gi|302389941|ref|YP_003825762.1| hypothetical protein Toce_1384 [Thermosediminibacter oceani DSM
16646]
gi|302200569|gb|ADL08139.1| protein of unknown function DUF28 [Thermosediminibacter oceani DSM
16646]
Length = 242
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 126/215 (58%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
V++GGP+P +N+ L ++EKA+E ++P + + R IKR S E G E +YE YG GG
Sbjct: 36 VREGGPDPNANSKLRDIIEKAREANMPNENIMRAIKRGSGELGGANMEEVLYEGYGPGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
++++EV+TD R+ +R + GG + + G V + F + ++ I+ +D D D ++
Sbjct: 96 AVLLEVMTDNRNRTAGELRHIFDKYGGNLGEAGCVAWMFEKKGLIIIEKSDGIDVDGVMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A++AGA+DV E +DD+ E + ++++ + D+ L+E G+ + +
Sbjct: 156 LAIEAGADDVEE----QDDSIE--------ITTSTERFEDVRKFLQEKGVKLSSAEIT-Y 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP TT+ + ++ E+ ++L+ L + DDV VYT+
Sbjct: 203 LPKTTLSLSEKDSEMMEKLLEALEDHDDVQNVYTN 237
>gi|372223366|ref|ZP_09501787.1| hypothetical protein MzeaS_13680 [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 236
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 125/232 (53%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P +N+ L AV++ AK +++PKD +ER IKRAS
Sbjct: 13 MKRWAAMSKAFTRIGKDIVMAVKEGGPDPDANSRLRAVIQNAKSVNMPKDNIERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G++I++E TD TR+VA +R C G + GSV F F
Sbjct: 73 DKSQGDYKEVLFEGYAPHGIAILIETATDNNTRTVANIRSYFNKCNGSLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V V+ED + + +++ D+
Sbjct: 133 HTCNFRINGEGLDPEELELELIDFGAEEVF---VDEDGI---------LIYAPFESFGDL 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L GI +G E +P T E+++E + ++L+ K+ E DDV VY
Sbjct: 181 QKELESRGIEI-LSSGFERIPQVTKELNEEQVADVEKLLEKIEEDDDVQNVY 231
>gi|191637963|ref|YP_001987129.1| hypothetical protein LCABL_11860 [Lactobacillus casei BL23]
gi|227535500|ref|ZP_03965549.1| protein of hypothetical function DUF28 [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239631878|ref|ZP_04674909.1| hypothetical protein LBPG_00793 [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066047|ref|YP_003788070.1| hypothetical protein LCAZH_0977 [Lactobacillus casei str. Zhang]
gi|385819712|ref|YP_005856099.1| hypothetical protein LC2W_1181 [Lactobacillus casei LC2W]
gi|385822866|ref|YP_005859208.1| hypothetical protein LCBD_1169 [Lactobacillus casei BD-II]
gi|409996825|ref|YP_006751226.1| transcriptional regulatory protein [Lactobacillus casei W56]
gi|417980228|ref|ZP_12620909.1| hypothetical protein LCA12A_2314 [Lactobacillus casei 12A]
gi|417983099|ref|ZP_12623741.1| hypothetical protein LCA211_0428 [Lactobacillus casei 21/1]
gi|417986308|ref|ZP_12626880.1| hypothetical protein LCA32G_0649 [Lactobacillus casei 32G]
gi|417989243|ref|ZP_12629754.1| hypothetical protein LCAA2362_2696 [Lactobacillus casei A2-362]
gi|417992570|ref|ZP_12632925.1| hypothetical protein LCACRF28_0433 [Lactobacillus casei CRF28]
gi|417995801|ref|ZP_12636088.1| hypothetical protein LCAM36_2592 [Lactobacillus casei M36]
gi|417998737|ref|ZP_12638952.1| hypothetical protein LCAT71499_0577 [Lactobacillus casei T71499]
gi|418001643|ref|ZP_12641780.1| hypothetical protein LCAUCD174_1058 [Lactobacillus casei UCD174]
gi|418004731|ref|ZP_12644743.1| hypothetical protein LCAUW1_1014 [Lactobacillus casei UW1]
gi|418007629|ref|ZP_12647508.1| hypothetical protein LCAUW4_0946 [Lactobacillus casei UW4]
gi|418010435|ref|ZP_12650212.1| hypothetical protein LCALC10_0959 [Lactobacillus casei Lc-10]
gi|418013394|ref|ZP_12653038.1| hypothetical protein LCALPC37_1006 [Lactobacillus casei Lpc-37]
gi|226696264|sp|B3WD20.1|Y1186_LACCB RecName: Full=Probable transcriptional regulatory protein
LCABL_11860
gi|190712265|emb|CAQ66271.1| UPF0082 protein LSEI_1022 [Lactobacillus casei BL23]
gi|227186822|gb|EEI66889.1| protein of hypothetical function DUF28 [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526343|gb|EEQ65344.1| hypothetical protein LBPG_00793 [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438454|gb|ADK18220.1| conserved hypothetical protein [Lactobacillus casei str. Zhang]
gi|327382039|gb|AEA53515.1| hypothetical protein LC2W_1181 [Lactobacillus casei LC2W]
gi|327385193|gb|AEA56667.1| hypothetical protein LCBD_1169 [Lactobacillus casei BD-II]
gi|406357837|emb|CCK22107.1| Probable transcriptional regulatory protein LCABL_11860
[Lactobacillus casei W56]
gi|410525455|gb|EKQ00357.1| hypothetical protein LCA12A_2314 [Lactobacillus casei 12A]
gi|410526501|gb|EKQ01388.1| hypothetical protein LCA32G_0649 [Lactobacillus casei 32G]
gi|410528880|gb|EKQ03718.1| hypothetical protein LCA211_0428 [Lactobacillus casei 21/1]
gi|410533149|gb|EKQ07836.1| hypothetical protein LCACRF28_0433 [Lactobacillus casei CRF28]
gi|410536505|gb|EKQ11098.1| hypothetical protein LCAM36_2592 [Lactobacillus casei M36]
gi|410538967|gb|EKQ13508.1| hypothetical protein LCAA2362_2696 [Lactobacillus casei A2-362]
gi|410540341|gb|EKQ14856.1| hypothetical protein LCAT71499_0577 [Lactobacillus casei T71499]
gi|410546089|gb|EKQ20360.1| hypothetical protein LCAUCD174_1058 [Lactobacillus casei UCD174]
gi|410548544|gb|EKQ22741.1| hypothetical protein LCAUW4_0946 [Lactobacillus casei UW4]
gi|410548829|gb|EKQ23014.1| hypothetical protein LCAUW1_1014 [Lactobacillus casei UW1]
gi|410553924|gb|EKQ27912.1| hypothetical protein LCALC10_0959 [Lactobacillus casei Lc-10]
gi|410555920|gb|EKQ29851.1| hypothetical protein LCALPC37_1006 [Lactobacillus casei Lpc-37]
Length = 243
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 116/214 (54%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+GGP+P+ N L V++KAK ++PKD ++R + +AS++ + E YE YG GGV+
Sbjct: 36 AKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRALDKASDRDAANYDEVTYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ + VR + GG MA G+V + F R V++ D D+DQ+L+
Sbjct: 96 ILVEALTDNRNRTSSTVRVAITRHGGNMAAAGAVSYMFDRKGYLVISRDDLDVDEDQMLE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAED+ ++ +++ + + + L E G F N +
Sbjct: 156 DALEAGAEDM------------QTSDEAFEIYTDPKEFAQVRDALEEKGYKF-VQNELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P + ++ +E + +I +L + DDV VYT
Sbjct: 203 VPQNLTPIPEDKVEQFQAMIDQLEDDDDVQEVYT 236
>gi|350566610|ref|ZP_08935262.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus indolicus
ATCC 29427]
gi|348662359|gb|EGY79024.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus indolicus
ATCC 29427]
Length = 212
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 115/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P N L ++KAK ++P D +ER IK+ S E E+F E YE YG G+
Sbjct: 4 VKEGGPDPDYNPQLKVAIDKAKAENMPNDNIERAIKKGSGEDSAESFEEITYEGYGPSGI 63
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V LTD R+ +R GG + PGSV F F + + + + D D+L+ +
Sbjct: 64 AVLVNCLTDNRNRTAPDIRHAFDKYGGNLGTPGSVSFMFDKKGQIVVLSDNIDGDELMMV 123
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETDNGSEL 197
A+DAGAEDV+E E Y++++ ++Y + + L EAG F ++D
Sbjct: 124 AIDAGAEDVVE------------EEDAYEIITAVEDYHKVRSALEEAGYDFVQSDITYIP 171
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+T+ D+ + K +I L + DDV VYT+
Sbjct: 172 QNYSTLTNPDDIKNMEK-MIDVLEDNDDVQEVYTN 205
>gi|39996176|ref|NP_952127.1| hypothetical protein GSU1074 [Geobacter sulfurreducens PCA]
gi|409911617|ref|YP_006890082.1| hypothetical protein KN400_1052 [Geobacter sulfurreducens KN400]
gi|49036508|sp|P62036.1|Y1074_GEOSL RecName: Full=Probable transcriptional regulatory protein GSU1074
gi|39982941|gb|AAR34400.1| protein of unknown function DUF28 [Geobacter sulfurreducens PCA]
gi|298505190|gb|ADI83913.1| protein of unknown function DUF28 [Geobacter sulfurreducens KN400]
Length = 247
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 119/214 (55%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
K GG +P N L A ++KAK ++PKD +ER IK+ + E ++ E +YE YG GGV
Sbjct: 36 AKIGGGDPNGNPRLRAAVDKAKAENMPKDNIERAIKKGTGELEGVSYEEIIYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE +TD R+V VR C G M + G V + F + ++ + D D ++L +
Sbjct: 96 AVLVECMTDNRNRTVGEVRSTFTKCNGNMGEAGCVSWMFDKKGLIVLS-KDVDFEKLFET 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGA+DV DE E Y+V++ + D+ L +AG PFE+ + ++
Sbjct: 155 ALEAGADDV---------ADE---EEQYEVLTDPAAFIDVREALEKAGFPFESAEIT-MI 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T +++D + E +L+ +L + DDV VY +
Sbjct: 202 PQTMVKLDGKNAENMLKLMDRLEDNDDVQNVYAN 235
>gi|309812854|ref|ZP_07706587.1| DNA-binding regulatory protein, YebC/PmpR family [Dermacoccus sp.
Ellin185]
gi|308433176|gb|EFP57075.1| DNA-binding regulatory protein, YebC/PmpR family [Dermacoccus sp.
Ellin185]
Length = 270
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 20/220 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +PT N L ++KAK+ VP D ++R +KR S E G + YE Y GG
Sbjct: 49 ARSGGGDPTGNPTLYDAIQKAKKSSVPNDNIDRAVKRGSGAEAGGAEYQALTYEGYAPGG 108
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK----- 132
V++++E LTD R+VA VR ++ GG MAD GSV + F R +V + DK
Sbjct: 109 VALLIECLTDNKNRAVAEVRTALQKNGGSMADSGSVAYLFNRKGIVIVPKAQGDKPDTTE 168
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
D LL+I L+AGAEDV +D E +++VS + ++ + L+ AGI +++
Sbjct: 169 DALLEIVLEAGAEDV-------NDLGES-----FEIVSEAGDFVGVREALQAAGIDYDSA 216
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
S +P + +D + + +I L + DDV V+ +
Sbjct: 217 EAS-FVPSMEVPLDKDGAKKMFRVIEALEDSDDVQNVFAN 255
>gi|116494525|ref|YP_806259.1| hypothetical protein LSEI_1022 [Lactobacillus casei ATCC 334]
gi|122264049|sp|Q03AF5.1|Y1022_LACC3 RecName: Full=Probable transcriptional regulatory protein LSEI_1022
gi|116104675|gb|ABJ69817.1| hypothetical protein LSEI_1022 [Lactobacillus casei ATCC 334]
Length = 243
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 116/214 (54%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+GGP+P+ N L V++KAK ++PKD ++R + +AS++ + E YE YG GGV+
Sbjct: 36 AKQGGPDPSGNPSLRLVMDKAKAANMPKDNIKRALDKASDRDAANYDEVTYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ + VR + GG MA G+V + F R V++ D D+DQ+L+
Sbjct: 96 ILVEALTDNRNRTSSTVRVAITRHGGNMAAAGAVSYMFDRKGYLVISRDDLDVDEDQMLE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAED+ ++ +++ + + + L E G F N +
Sbjct: 156 DALEAGAEDM------------QTSDEAFEIYTDPKEFAQVRDALEEKGYKF-VQNELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P + ++ +E + +I +L + DDV VYT
Sbjct: 203 VPQNLTPIPEDKVEKFQAMIDQLEDDDDVQEVYT 236
>gi|404446354|ref|ZP_11011468.1| hypothetical protein MVAC_23876 [Mycobacterium vaccae ATCC 25954]
gi|403650528|gb|EJZ05759.1| hypothetical protein MVAC_23876 [Mycobacterium vaccae ATCC 25954]
Length = 251
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR S E G + YE YG G
Sbjct: 36 ARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERARKRGSGEEAGGADWQNITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++VE LTD R+ VR + GG MADPGSV + F R V+ ++ +D +L
Sbjct: 96 VAVLVECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFSRKGVITLEKNGLSEDDVLA 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAEDV D D ++++S + + T L++AGI +E+ S
Sbjct: 156 AVLDAGAEDV------NDLGDS------FEIISEPTDLVAVRTALQDAGIDYESAEAS-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD E +L+ L + DDV VYT+
Sbjct: 203 QPSVTVPVDLEGARKVLKLVDALEDSDDVQDVYTN 237
>gi|387876708|ref|YP_006307012.1| hypothetical protein W7S_16620 [Mycobacterium sp. MOTT36Y]
gi|386790166|gb|AFJ36285.1| hypothetical protein W7S_16620 [Mycobacterium sp. MOTT36Y]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGGADYQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR V GG MADPGSV + F R VV ++ +D +L
Sbjct: 97 AVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVSYLFTRKGVVTLEKNGLTEDDVLTA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAEDV +D E ++++S + + T L++AGI +E+ + S
Sbjct: 157 VLDAGAEDV-------NDLGES-----FEIISEPTDLVAVRTALQDAGIDYESADAS-FQ 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ VD E +L+ L + DDV V+T+
Sbjct: 204 PSVSVPVDVEGARKVFKLVDALEDSDDVQNVWTN 237
>gi|383765166|ref|YP_005444147.1| hypothetical protein PSMK_00910 [Phycisphaera mikurensis NBRC
102666]
gi|381385434|dbj|BAM02250.1| hypothetical protein PSMK_00910 [Phycisphaera mikurensis NBRC
102666]
Length = 238
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 14/231 (6%)
Query: 4 KQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI-KRASEKGQ 62
K+S I ++ + K GG +P N L +++AK ++PKD + + I K A
Sbjct: 20 KRSKIWSKCSRAIIVAAKHGGGDPDQNLTLRYAVDEAKAANMPKDTIAKAIEKGAGGSDG 79
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ + E VYE YG GV++ VE LTD R+V +R++ + CGG +A GSV F F R
Sbjct: 80 DDYEEVVYEGYGPAGVAVYVETLTDNRNRTVPELRKMFEKCGGNLASAGSVAFTFERKGE 139
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
+ + AD+++++D+ L+AGAEDV ED A+ +++ + +++ + L
Sbjct: 140 LFVDGAKADEEKIMDVVLEAGAEDV------ED------ADGAWRITTAVEDFHRVRAAL 187
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
AG+ + G +LP+ +E+D E E + + +L + DDV VY +
Sbjct: 188 EAAGLTPDQ-AGLPMLPLNVVELDGEQAEKTERFLDELDDHDDVQKVYANN 237
>gi|333398661|ref|ZP_08480474.1| hypothetical protein LgelK3_08890 [Leuconostoc gelidum KCTC 3527]
gi|406600217|ref|YP_006745563.1| hypothetical protein C269_06200 [Leuconostoc gelidum JB7]
gi|406371752|gb|AFS40677.1| hypothetical protein C269_06200 [Leuconostoc gelidum JB7]
Length = 240
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG + N L V+EKAK ++PKD ++R + +AS G + F E YE YG GV+
Sbjct: 36 AKAGGADTDMNASLRLVVEKAKSANMPKDNIQRALDKASGAGGQKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLL 136
++VE TD I R+V+++R K GG + GSV F+F R + I F + D+D +L
Sbjct: 96 VLVETSTDNINRTVSSIRNSFKHFGGALGTSGSVAFQFDRKGYLAIDREMFPELDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV + +++ + +++ I L EAG F+ +
Sbjct: 156 ESALEAGAEDV------------QTQDAVFEIYTAPNDFQTIEGTLGEAGYVFDEAEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + + DE E ++LI +L E +DV AVYT
Sbjct: 203 MIAQNPMIISDEDREKLEQLIDELEENEDVLAVYT 237
>gi|119476896|ref|ZP_01617177.1| hypothetical protein GP2143_10097 [marine gamma proteobacterium
HTCC2143]
gi|119449703|gb|EAW30940.1| hypothetical protein GP2143_10097 [marine gamma proteobacterium
HTCC2143]
Length = 248
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 19/215 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
K GGP+P N L AV++KA ++ +D +++ I R + G E E YE YG GG++
Sbjct: 37 KAGGPSPEDNPTLRAVIDKALGSNMRRDTIDKAIARGAGTGDEDNYEAASYEGYGVGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+VA +R GG + GSV + F R I F D+DQ++DIA
Sbjct: 97 VLVECLTDNRNRTVAEIRHAFSKRGGNLGTDGSVAYLF--TRTGQISFEKGDEDQVMDIA 154
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE--L 197
L+AGAEDV+ +N+D + V + +++ + + G+ T + +E +
Sbjct: 155 LEAGAEDVV---MNDDGS--------IDVSTAFEDFLSVKEAMVAGGL---TPDHAEVTM 200
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP +E+D + E LI L +LDDV VYT+
Sbjct: 201 LPSVLVELDKDGAEKAMGLIDMLEDLDDVQNVYTN 235
>gi|227431945|ref|ZP_03913965.1| protein of hypothetical function DUF28 [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|381336930|ref|YP_005174705.1| hypothetical protein MI1_06475 [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|227352230|gb|EEJ42436.1| protein of hypothetical function DUF28 [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|356644896|gb|AET30739.1| hypothetical protein MI1_06475 [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 240
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 117/215 (54%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V+EKAK ++PK+ ++R + +AS F E YE YG GV+
Sbjct: 36 AKAGGADPDMNASLRLVVEKAKAANMPKENIQRALDKASGANGAKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLL 136
++VE TD I R+V++VR K GG + GSV F+F R + I F D D+D +L
Sbjct: 96 VLVEASTDNINRTVSSVRNSFKHAGGALGTSGSVAFQFDRRGYLAIDRSAFPDLDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV T +D +++ + ++ + + L EAG FE D
Sbjct: 156 EAALEAGAEDV--------QTSDD----VFEIYTEPADFQAVESALTEAGYVFE-DAEVT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ +++ +E E +L+ +L + +DV AVYT
Sbjct: 203 MIAQNPMDISEEDREKLDKLVDELEDNEDVLAVYT 237
>gi|397906046|ref|ZP_10506871.1| FIG000859: hypothetical protein [Caloramator australicus RC3]
gi|397160806|emb|CCJ34206.1| FIG000859: hypothetical protein [Caloramator australicus RC3]
Length = 246
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 124/215 (57%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE-AFIEKVYEVYGYGGV 78
VK+GGPNP +N+ L V+ KAK ++P + ++R IKRA+ + ++ + E +YE YG GV
Sbjct: 36 VKEGGPNPEANSRLRDVIAKAKANNMPMENIQRAIKRATGELKDVTYEEIIYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+++V+ LTD R+ VR + + GG + G V F F + ++ ++ + D+D L+
Sbjct: 96 AVIVQALTDNRNRTAGDVRHIFEKFGGNLGATGCVSFLFEKKGLIIVEKEEGIDEDSLMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+ALDAGAED ++ED Y++ ++ ++++ + L GI + S +
Sbjct: 156 MALDAGAEDF--------SSEEDA----YEITTSPEDFSKVREALENNGIKLASAEVS-M 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T + +D EA E ++L+ +L E DDV V+ +
Sbjct: 203 IPSTYVALDGEAAEKFEKLLDRLEENDDVQNVWHN 237
>gi|329945623|ref|ZP_08293356.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 170 str. F0386]
gi|328528626|gb|EGF55591.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 170 str. F0386]
Length = 254
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +PT N L ++KAK+ VP D + R +KR S E G + +YE YG GGV
Sbjct: 37 RTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+ +VE LTD R+ + VR GG +ADPGSV + F R VV + TD D+D +L
Sbjct: 97 AFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVAYNFTRKGVVEVAKTDGVDEDSILM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V ED E +++ S + + T L EAG+ +++ +
Sbjct: 157 AVLDAGAEEV-----------EDMGES-FEIYSEPGDIVAVRTALTEAGMDYDSAE-VQF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T +EVD + LI L + DDV VYT
Sbjct: 204 VAGTKVEVDVDGARKVFRLIDALEDSDDVQNVYT 237
>gi|227486688|ref|ZP_03917004.1| protein of hypothetical function DUF28 [Anaerococcus lactolyticus
ATCC 51172]
gi|227235276|gb|EEI85291.1| protein of hypothetical function DUF28 [Anaerococcus lactolyticus
ATCC 51172]
Length = 243
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 16 YLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVY 70
+ RN+ ++GG +P N L +E AK ++P D ++R IK+AS E G + F +Y
Sbjct: 28 HARNITVAAREGGLDPEYNASLKTAIEMAKADNMPNDNIDRAIKKASGEAGGDNFERIIY 87
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E YG GGV+ +V+ LTD R+ VR + GG + GSVMF F + + +
Sbjct: 88 EGYGPGGVAFIVDCLTDNKNRTAPDVRHIFDKFGGNLGTDGSVMFLFEKKGEIVVNGEGK 147
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D D+ + AL+AGA DV +D E Y++V++ +++ D KLRE G E
Sbjct: 148 DFDEFMMDALEAGASDV-----------DDIEEGYFQVLTEVNDFNDTVEKLREMGYKIE 196
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
N S L IEVD E +LI L + DD+ VY
Sbjct: 197 KANVSYLA--NDIEVDPSHHEKLFKLIDALEDNDDIQEVY 234
>gi|344198382|ref|YP_004782708.1| hypothetical protein Acife_0144 [Acidithiobacillus ferrivorans SS3]
gi|343773826|gb|AEM46382.1| UPF0082 protein yeeN [Acidithiobacillus ferrivorans SS3]
Length = 250
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 121/214 (56%), Gaps = 17/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
+ GG +P SN+ L L+KA ++ KD +ER +KR + + + E+V YE YG GGV+
Sbjct: 37 RAGGGDPASNSRLRLALDKAYGANMTKDTIERAVKRGTGELEGVDYEEVTYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I++E +TD R+VA VR + GG M GSV ++F++ ++ I DAD+D++L+ A
Sbjct: 97 ILIETMTDNKVRTVAEVRHIFSKRGGNMGTAGSVAYQFKKLGLI-IFPADADEDRILEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSELL 198
L+AGAEDV VNE ER + SD ++ + L AG+ P E++ ++
Sbjct: 156 LEAGAEDV----VNE-------GERIAVYTAPSDLHS-VVLALEAAGLKPEESE--MTMI 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TIEV E E LI L E DDV VY +
Sbjct: 202 PENTIEVSGEEAEKLLRLIDFLEENDDVQNVYAN 235
>gi|161986638|ref|YP_446765.2| hypothetical protein SRU_2667 [Salinibacter ruber DSM 13855]
gi|118574126|sp|Q2RZ66.2|Y2667_SALRD RecName: Full=Probable transcriptional regulatory protein SRU_2667
Length = 257
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 18/232 (7%)
Query: 3 RKQSCIRGWGRKSYL--RNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 60
R++S + W R S + ++GG +P +N L+ LE+A+E D+ KD +ER IKR + +
Sbjct: 20 RRKSKV--WARLSQEIEKAAREGGGDPDANVALSQALERAREEDMAKDTIERAIKRGTGE 77
Query: 61 GQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
+E EKV YE Y GV++ VE T+ I R+V +R + D GG + GSV + F +
Sbjct: 78 LEEEGREKVTYEGYAPHGVAVFVEGETENINRTVKDLRNLFSDHGGNLGKDGSVAYLFEQ 137
Query: 120 ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
I D+ L ++A++AGAE+V D+TD Y V + D + D+
Sbjct: 138 KGRFEIAADATDEMTLFEVAVEAGAEEV-------DETD-----GTYVVTTGRDAFADVG 185
Query: 180 TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
L EAG+P E N P TT+ + + + + LI K+ +L DV +VYT
Sbjct: 186 EALDEAGLPVEA-NALVRAPTTTVALAPDERDAVRGLIEKINDLRDVTSVYT 236
>gi|262197094|ref|YP_003268303.1| hypothetical protein [Haliangium ochraceum DSM 14365]
gi|262080441|gb|ACY16410.1| protein of unknown function DUF28 [Haliangium ochraceum DSM 14365]
Length = 249
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 117/216 (54%), Gaps = 20/216 (9%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGVS 79
+ GG +P N L ++KA+ +VPKD ++R I + S G + + E VYE YG GV+
Sbjct: 37 RMGGADPDGNARLRMAVDKARGANVPKDTLQRAIDKGSGAGAGDDWEEVVYEGYGPAGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+V+E +TD R+V+ +R ++ GG M GSV + F + ++++ +D+L+++A
Sbjct: 97 VVLECMTDNRNRTVSEIRHSLEKFGGNMGTTGSVSWMFNKRGIIHVLKDATSEDKLMEVA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET---DNGSE 196
L+AGAEDV DD E + V + N+ + LREAGI E DN
Sbjct: 157 LEAGAEDV------RDD------EEVWTVDTEPSNFIGVQDALREAGIEVENAEIDN--- 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P IEV ++ E +++ L +LDDV VY +
Sbjct: 202 -IPDNRIEVPEDKAESLVKMLGTLEDLDDVQNVYAN 236
>gi|325068883|ref|ZP_08127556.1| hypothetical protein AoriK_13725 [Actinomyces oris K20]
Length = 254
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +PT N L ++KAK+ VP D + R +KR S E G + +YE YG GG
Sbjct: 36 ARTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R VV + D D+D +L
Sbjct: 96 VAFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVAYNFTRKGVVEVAKADGVDEDSIL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
LDAGAE+V ED E +++ S + + T L EAG+ +++ +
Sbjct: 156 MAVLDAGAEEV-----------EDMGES-FEIYSEPGDIVAVRTALTEAGMDYDSAE-VQ 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T +EVD E LI L + DDV VYT
Sbjct: 203 FVAGTKVEVDVEGARKVFRLIDALEDSDDVQNVYT 237
>gi|198282208|ref|YP_002218529.1| hypothetical protein Lferr_0060 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666356|ref|YP_002424573.1| hypothetical protein AFE_0059 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|416000561|ref|ZP_11560699.1| hypothetical protein GGI1_20463 [Acidithiobacillus sp. GGI-221]
gi|226734030|sp|B7J3G0.1|Y059_ACIF2 RecName: Full=Probable transcriptional regulatory protein AFE_0059
gi|226734031|sp|B5EJL6.1|Y060_ACIF5 RecName: Full=Probable transcriptional regulatory protein
Lferr_0060
gi|198246729|gb|ACH82322.1| protein of unknown function DUF28 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218518569|gb|ACK79155.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|339835973|gb|EGQ63600.1| hypothetical protein GGI1_20463 [Acidithiobacillus sp. GGI-221]
Length = 250
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 121/214 (56%), Gaps = 17/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
+ GG +P SN+ L L+KA ++ KD +ER IKR + + + E+V YE YG GGV+
Sbjct: 37 RAGGGDPASNSRLRLALDKAYGANMTKDTIERAIKRGTGELEGVDYEEVTYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I++E +TD R+VA VR + GG M GSV ++F++ ++ + DAD+D++L+ A
Sbjct: 97 ILIETMTDNKVRTVAEVRHIFSKRGGNMGTAGSVAYQFKKLGLI-VFPADADEDRILEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSELL 198
L+AGAEDV VNE ER + SD ++ + L AG+ P E++ ++
Sbjct: 156 LEAGAEDV----VNE-------GERIAVYTAPSDLHS-VVLALEAAGLKPEESE--MTMI 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TIEV E E LI L E DDV VY +
Sbjct: 202 PENTIEVSGEEAEKLLRLIDFLEENDDVQNVYAN 235
>gi|313673194|ref|YP_004051305.1| hypothetical protein Calni_1234 [Calditerrivibrio nitroreducens DSM
19672]
gi|312939950|gb|ADR19142.1| protein of unknown function DUF28 [Calditerrivibrio nitroreducens
DSM 19672]
Length = 242
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 14/208 (6%)
Query: 26 NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIVVEV 84
+P N L L+KAK ++PKD VER IK+ +G + E V YE YG GGV+I+++
Sbjct: 43 DPEFNPRLRLALDKAKAANMPKDNVERAIKKGLGEGDGSNYEDVIYEGYGPGGVAILIQA 102
Query: 85 LTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGA 144
LTD R+VA VR + GG M + G V + F + V+NI D+D L+ IA+D+GA
Sbjct: 103 LTDNKNRTVAEVRSTLTKRGGSMGEAGCVSWMFDKKGVINIPKDAVDEDTLMMIAIDSGA 162
Query: 145 EDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIE 204
EDV+ N+D Y+V++ NY + + + I E + + P TIE
Sbjct: 163 EDVV---TNDDG---------YEVITDPANYETVKKAIESSNIKIEYAEIT-MRPKNTIE 209
Query: 205 VDDEAMELNKELIAKLLELDDVDAVYTD 232
+ E E L+ L +LDDV VY++
Sbjct: 210 LSGEEAEKTMALLEALEDLDDVQEVYSN 237
>gi|421872275|ref|ZP_16303894.1| conserved hypothetical protein [Brevibacillus laterosporus GI-9]
gi|372458887|emb|CCF13443.1| conserved hypothetical protein [Brevibacillus laterosporus GI-9]
Length = 248
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 17/234 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG 61
Q+K + R+ ++ K GGP+PT+N L A++ A+ +++P D +ER IK+A++ G
Sbjct: 16 QKKNNQYVKLARQIFVE-AKNGGPDPTANLKLKAIIANARAINMPNDNIERAIKKATDSG 74
Query: 62 QEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRA 120
Q E++ YE Y GGV+++VE L+D R+ A VR + GG M + GSV F F R
Sbjct: 75 QGDNYEEIRYEGYAPGGVAVIVECLSDNRNRTAADVRAIFGKRGGNMGETGSVSFMFDRK 134
Query: 121 RVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
V+ I + + D+D +L AL+AGAED+I V E++ ++V++ +
Sbjct: 135 GVIVIDREEFEVDEDTMLMQALEAGAEDLI---VTEEE---------FEVITHPHELEQV 182
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L G F T+ + +P T+++ E E +++ E DDV VY +
Sbjct: 183 KHALETEGYKF-TNAEIQWIPQNTVKISGEDAEKILKMMEAFEENDDVQNVYAN 235
>gi|379748028|ref|YP_005338849.1| hypothetical protein OCU_33090 [Mycobacterium intracellulare ATCC
13950]
gi|443306482|ref|ZP_21036270.1| hypothetical protein W7U_12500 [Mycobacterium sp. H4Y]
gi|378800392|gb|AFC44528.1| hypothetical protein OCU_33090 [Mycobacterium intracellulare ATCC
13950]
gi|442768046|gb|ELR86040.1| hypothetical protein W7U_12500 [Mycobacterium sp. H4Y]
Length = 251
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGGADYQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR V GG MADPGSV + F R VV ++ +D +L
Sbjct: 97 AVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVSYLFTRKGVVTLEKNGLTEDDVLTA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAEDV +D E ++++S + + T L++AGI +E+ S
Sbjct: 157 VLDAGAEDV-------NDLGES-----FEIISEPTDLVAVRTALQDAGIDYESAEAS-FQ 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ VD E +L+ L + DDV V+T+
Sbjct: 204 PSVSVPVDVEGARKVFKLVDALEDSDDVQNVWTN 237
>gi|254821083|ref|ZP_05226084.1| hypothetical protein MintA_14197 [Mycobacterium intracellulare ATCC
13950]
gi|379755331|ref|YP_005344003.1| hypothetical protein OCO_33190 [Mycobacterium intracellulare
MOTT-02]
gi|379762867|ref|YP_005349264.1| hypothetical protein OCQ_34310 [Mycobacterium intracellulare
MOTT-64]
gi|406031561|ref|YP_006730452.1| hypothetical protein MIP_04992 [Mycobacterium indicus pranii MTCC
9506]
gi|378805547|gb|AFC49682.1| hypothetical protein OCO_33190 [Mycobacterium intracellulare
MOTT-02]
gi|378810809|gb|AFC54943.1| hypothetical protein OCQ_34310 [Mycobacterium intracellulare
MOTT-64]
gi|405130108|gb|AFS15363.1| Hypothetical protein MIP_04992 [Mycobacterium indicus pranii MTCC
9506]
Length = 251
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGGADYQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR V GG MADPGSV + F R VV ++ +D +L
Sbjct: 97 AVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVSYLFTRKGVVTLEKNGLTEDDVLTA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAEDV +D E ++++S + + T L++AGI +E+ S
Sbjct: 157 VLDAGAEDV-------NDLGES-----FEIISEPTDLVAVRTALQDAGIDYESAEAS-FQ 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ VD E +L+ L + DDV V+T+
Sbjct: 204 PSVSVPVDVEGARKVFKLVDALEDSDDVQNVWTN 237
>gi|46446962|ref|YP_008327.1| hypothetical protein pc1328 [Candidatus Protochlamydia amoebophila
UWE25]
gi|60390917|sp|Q6MBJ7.1|Y1328_PARUW RecName: Full=Probable transcriptional regulatory protein pc1328
gi|46400603|emb|CAF24052.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 245
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 17/221 (7%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK GG + +N L L+KA++ ++P + ++RNIK+AS QE + E YE+Y
Sbjct: 30 KEIISAVKLGGADQKNNPRLRLALQKARDANMPNENIDRNIKKASSADQEDYHEMTYELY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD 133
G+GGV IVV+V+TD R + +R GG +A PG+V F F R ++ I +A ++
Sbjct: 90 GHGGVGIVVDVMTDNKNRISSDMRIATNKRGGTVATPGAVTFNFDRKGILQISKKNAIEE 149
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+L A +AGAED E D D + + + + + + G E
Sbjct: 150 ELFLAATEAGAEDF------EVDND------VFIITTDPSHLYSVKDAINHLGFACEE-- 195
Query: 194 GSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EL +P T +E E + N LI L EL+DVDAVY +
Sbjct: 196 -AELGMIPRTYVECSVETAKDNLALIEWLEELEDVDAVYHN 235
>gi|400536671|ref|ZP_10800205.1| hypothetical protein MCOL_V219846 [Mycobacterium colombiense CECT
3035]
gi|400329684|gb|EJO87183.1| hypothetical protein MCOL_V219846 [Mycobacterium colombiense CECT
3035]
Length = 251
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGGADYQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR V GG MADPGSV + F R VV ++ +D +L
Sbjct: 97 AVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVSYLFTRKGVVTLEKNGLTEDDVLTA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAEDV +D E ++++S + + T L++AGI +E+ S
Sbjct: 157 VLDAGAEDV-------NDLGES-----FEIISEPTDLVAVRTALQDAGIDYESAEAS-FQ 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ VD E +L+ L + DDV V+T+
Sbjct: 204 PSVSVPVDVEGARKVFKLVDALEDSDDVQNVWTN 237
>gi|335041174|ref|ZP_08534290.1| UPF0082 protein yeeN [Caldalkalibacillus thermarum TA2.A1]
gi|334178972|gb|EGL81621.1| UPF0082 protein yeeN [Caldalkalibacillus thermarum TA2.A1]
Length = 241
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE-AFIEKVYEVYGYGGV 78
VK GG +P N L L KAK+ ++P D ++R IK+A+ + + E VYE YG GV
Sbjct: 36 VKNGGSDPDQNPRLRMALHKAKQANMPNDNIQRTIKKATGDVEGLTYEEIVYEGYGPHGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+VLTD RS A VR + GG + + G V + F R VV+ + +D L+
Sbjct: 96 AIMVDVLTDNRNRSAAEVRHLFNKHGGNLGESGCVAYLFERKGLIVVDKEAAPLGEDDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+A++AGAED+ EDD Y+VV+ +Y + L IP +
Sbjct: 156 LMAIEAGAEDL----RVEDDA--------YEVVTAPGDYETVKQALETKQIPL-AETQIT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+LP TT++++DE E +LI L + DDV VYT+
Sbjct: 203 MLPTTTVQLNDEQKEQVMKLIDALEDSDDVQNVYTN 238
>gi|227496225|ref|ZP_03926522.1| protein of hypothetical function DUF28 [Actinomyces urogenitalis
DSM 15434]
gi|226834240|gb|EEH66623.1| protein of hypothetical function DUF28 [Actinomyces urogenitalis
DSM 15434]
Length = 254
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 110/214 (51%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D + R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPAGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+ +VE LTD R+ + VR GG +ADPGSV + F R VV I D D+D +L
Sbjct: 97 AFLVECLTDNRNRAASDVRVAFTRTGGNLADPGSVAYNFTRKGVVEIAKADGIDEDSILM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V+E P ++V+ + + + EAG+ +++ S+
Sbjct: 157 AVLDAGAEEVVEGP------------ESFEVLCEPTDLIAVRNAVTEAGMEYDSAE-SQF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T +EVD + LI L +LDDV V+T
Sbjct: 204 VAGTKVEVDLDGARKVMRLIDALEDLDDVQNVFT 237
>gi|317051311|ref|YP_004112427.1| hypothetical protein Selin_1136 [Desulfurispirillum indicum S5]
gi|316946395|gb|ADU65871.1| protein of unknown function DUF28 [Desulfurispirillum indicum S5]
Length = 249
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 112/213 (52%), Gaps = 15/213 (7%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSI 80
+ G +P N L L+KAK +++P D V+R IKR E + YE Y GG+++
Sbjct: 37 RNGADPDMNPALRLALQKAKGVNMPNDNVQRAIKRGIGGMDGDNYESITYEGYAPGGIAV 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+VE LTD R+VA VR + GG + + G V + F R V+ + A +D ++ +AL
Sbjct: 97 MVESLTDNKNRTVAEVRHIFSKRGGSLGESGCVGYLFSRKGVITVNAESASEDDVMLVAL 156
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAEDV + +++++ ++++ + + EAGIP ET ++P
Sbjct: 157 DAGAEDV------------KSGDGMFEIIAAAEDFMAVRDAMEEAGIPIETAE-MNMVPA 203
Query: 201 TTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 232
TTI V+DE + L+ L + DDV VY +
Sbjct: 204 TTITVEDEKIATQVLSLMEALEDCDDVQNVYMN 236
>gi|257055534|ref|YP_003133366.1| hypothetical protein Svir_15040 [Saccharomonospora viridis DSM
43017]
gi|256585406|gb|ACU96539.1| conserved hypothetical protein TIGR01033 [Saccharomonospora viridis
DSM 43017]
Length = 249
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP+D +ER KR + E G + +YE Y GG
Sbjct: 36 ARTGGGDPDGNPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGADWQNIMYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ + VR + GG +ADPGSV + F R VV + +D +L
Sbjct: 96 VAVLIECLTDNKNRAASEVRTALTRNGGSLADPGSVSYLFNRKGVVIMPKNGVSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E+ Y+++S + + + T L+EAG +E+ S
Sbjct: 156 AVLDAGAEEV-------NDLGEN-----YEIISEAGDMVAVRTALQEAGYDYESAEAS-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP + +D E LI L + DDV VY++
Sbjct: 203 LPSVHVPLDAETARKVFRLIEALEDCDDVQNVYSN 237
>gi|379735751|ref|YP_005329257.1| hypothetical protein BLASA_2322 [Blastococcus saxobsidens DD2]
gi|378783558|emb|CCG03226.1| conserved protein of unknown function; YebC-like [Blastococcus
saxobsidens DD2]
Length = 252
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR + E G + YE Y GGV
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRAVKRGAGLEAGGVDYQGITYEGYAAGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD RS VR + GG MADPGSV + F R VV + +D +L
Sbjct: 97 AVLVECLTDNKNRSAMEVRTAMTRNGGSMADPGSVSYLFSRKGVVVVPAAGHTEDDVLMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET-DNGSEL 197
LDAGAE+V + DT ++VVS + + T L+EAGI +++ D G
Sbjct: 157 VLDAGAEEVRDL----GDT--------FEVVSEPGDMVAVRTALQEAGIEYDSADMG--F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP +E+D + +LI L +LDDV VY +
Sbjct: 203 LPSVQVELDADGAAKVFKLIDALEDLDDVQNVYAN 237
>gi|189424310|ref|YP_001951487.1| hypothetical protein Glov_1245 [Geobacter lovleyi SZ]
gi|226696294|sp|B3E787.1|Y1245_GEOLS RecName: Full=Probable transcriptional regulatory protein Glov_1245
gi|189420569|gb|ACD94967.1| protein of unknown function DUF28 [Geobacter lovleyi SZ]
Length = 247
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 119/214 (55%), Gaps = 17/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI--EKVYEVYGYGGV 78
K GG +P +N L ++KAK ++PKD +ER IK+ + G E + E VYE YG GGV
Sbjct: 37 KLGGGDPAANPRLRTAIDKAKGENMPKDNIERAIKKGT-GGMEGVVYEEIVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VEV+TD R+V+ VR + C G M + G V + F + V++ T D DQL +
Sbjct: 96 AVLVEVMTDNRNRTVSEVRSIFTKCNGNMGEAGCVAWMFDKKGVISYD-TSLDFDQLFEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV+E ED+ E V + ++ ++ L G F++ + ++
Sbjct: 155 ALEAGAEDVVE----EDEQIE--------VYTEPSSFIEVRDALEAKGFKFQSAEIT-MI 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T + ++ + E +++ +L + DDV VY +
Sbjct: 202 PQTQVALEGKQAESMLKMMDRLEDCDDVQNVYAN 235
>gi|294508698|ref|YP_003572757.1| hypothetical protein SRM_02884 [Salinibacter ruber M8]
gi|294345027|emb|CBH25805.1| conserved hypothetical protein containing DUF28 [Salinibacter ruber
M8]
Length = 257
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 18/232 (7%)
Query: 3 RKQSCIRGWGRKSYL--RNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 60
R++S + W R S + ++GG +P +N L+ LE+A+E D+ KD +ER IKR + +
Sbjct: 20 RRKSKV--WARLSQEIEKAAREGGGDPDANVALSQALERAREEDMAKDTIERAIKRGTGE 77
Query: 61 GQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
+E EKV YE Y GV++ VE T+ I R+V +R + D GG + GSV + F +
Sbjct: 78 LEEEGREKVTYEGYAPHGVAVFVEGETENINRTVKDLRNLFSDHGGNLGKDGSVAYLFEQ 137
Query: 120 ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
I D+ L ++A++AGAE+V D+TD Y V + D + D+
Sbjct: 138 KGRFEIAADATDEMTLFEVAVEAGAEEV-------DETD-----GAYVVTTDRDAFADVG 185
Query: 180 TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
L EAG+P E N P TT+ + + + + LI K+ +L DV +VYT
Sbjct: 186 EALDEAGLPVEA-NALVRAPATTVALAPDERDAVRGLIEKINDLRDVTSVYT 236
>gi|385808901|ref|YP_005845297.1| hypothetical protein IALB_0317 [Ignavibacterium album JCM 16511]
gi|383800949|gb|AFH48029.1| Hypothetical protein IALB_0317 [Ignavibacterium album JCM 16511]
Length = 245
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 114/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
++GG +P N L ++ AK ++P + +ER IK+A+ E + E YE YG GV
Sbjct: 36 ARQGGGDPAGNPRLRLAIDNAKSENMPAENIERAIKKATGELEGVTYHELTYEGYGPAGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VEV TD R+VA VR + GG + + GSV + F R V+ I D +D +L I
Sbjct: 96 AMLVEVATDNKNRTVAEVRHIFSKHGGSLGETGSVAWMFERKGVITIPKQDKSEDDILAI 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
LDAGA+D+ E +Y++ +T +N+ + L+E + + DN S +
Sbjct: 156 VLDAGADDL------------QTEEEFYEITTTVENFESVRKALQENNL--KVDNASLQW 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ TIEV E E +LI L + DDV VY++
Sbjct: 202 IAKNTIEVKGEDAEKVMKLIEALEDCDDVQNVYSN 236
>gi|83755978|gb|ABC44091.1| conserved hypothetical protein TIGR01033 [Salinibacter ruber DSM
13855]
Length = 279
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 18/232 (7%)
Query: 3 RKQSCIRGWGRKSYL--RNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 60
R++S + W R S + ++GG +P +N L+ LE+A+E D+ KD +ER IKR + +
Sbjct: 42 RRKSKV--WARLSQEIEKAAREGGGDPDANVALSQALERAREEDMAKDTIERAIKRGTGE 99
Query: 61 GQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
+E EKV YE Y GV++ VE T+ I R+V +R + D GG + GSV + F +
Sbjct: 100 LEEEGREKVTYEGYAPHGVAVFVEGETENINRTVKDLRNLFSDHGGNLGKDGSVAYLFEQ 159
Query: 120 ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
I D+ L ++A++AGAE+V D+TD Y V + D + D+
Sbjct: 160 KGRFEIAADATDEMTLFEVAVEAGAEEV-------DETD-----GTYVVTTGRDAFADVG 207
Query: 180 TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
L EAG+P E N P TT+ + + + + LI K+ +L DV +VYT
Sbjct: 208 EALDEAGLPVEA-NALVRAPTTTVALAPDERDAVRGLIEKINDLRDVTSVYT 258
>gi|357019186|ref|ZP_09081442.1| hypothetical protein KEK_04232 [Mycobacterium thermoresistibile
ATCC 19527]
gi|356481046|gb|EHI14158.1| hypothetical protein KEK_04232 [Mycobacterium thermoresistibile
ATCC 19527]
Length = 251
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 112/212 (52%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GG +P N L ++KAK+ VP D +ER KR + E G + YE YG GV++
Sbjct: 39 GGGDPAGNPTLYDAIQKAKKASVPNDNIERARKRGAGEEAGGADWQTVTYEGYGPNGVAV 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
++E LTD R+ + VR + GG MADPGSV + F R VV ++ D +D +L L
Sbjct: 99 LIECLTDNRNRAASEVRVAMTRNGGNMADPGSVAYLFNRKGVVILEKNDLTEDDVLTAVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAEDV D +R ++VV + + T L++AGI +++ S +P
Sbjct: 159 DAGAEDV-----------NDLGDR-FEVVCEPGDLVAVRTALQDAGIDYDSAELS-FIPS 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ +D + +L+ L + DDV VYT+
Sbjct: 206 VTVPLDADGARKVMKLVEALEDSDDVQEVYTN 237
>gi|319790085|ref|YP_004151718.1| hypothetical protein Theam_1111 [Thermovibrio ammonificans HB-1]
gi|317114587|gb|ADU97077.1| protein of unknown function DUF28 [Thermovibrio ammonificans HB-1]
Length = 247
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
++GG +P +N L A +E+A++ ++PK+ +ER IKR + E EA+ E YE YG GGV
Sbjct: 36 AREGGGDPETNPRLRAAIERARKFNMPKENIERAIKRGTGEIAGEAYEEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ LTD R+ + VR GG + G V + F R V+ + D++ ++
Sbjct: 96 AIIVKCLTDNRNRTASEVRHAFSKHGGNLGTSGCVSWMFERKGVITVPADKFDEETVMLA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A+DAGA+DV V EDD + + + + L +AGI E + +L+
Sbjct: 156 AIDAGADDV----VREDDK--------FVIYTQPTELEAVRKGLLDAGIEVE-EAKLDLI 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT V+ E + +L+ L +LDDV VY++
Sbjct: 203 PTTTTRVEGETAQKVLKLLMALEDLDDVQEVYSN 236
>gi|392396647|ref|YP_006433248.1| YebC/PmpR family DNA-binding regulatory protein [Flexibacter
litoralis DSM 6794]
gi|390527725|gb|AFM03455.1| DNA-binding regulatory protein, YebC/PmpR family [Flexibacter
litoralis DSM 6794]
Length = 244
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 121/242 (50%), Gaps = 19/242 (7%)
Query: 3 RKQSCIRGWGRKSYLRN-----------VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 51
RK++ WG + RN VK GG +P +N L ++ AK ++PKD VE
Sbjct: 8 RKKAKFARWG--AMARNFTKVGREIAIAVKDGGADPDTNPRLRTAMQNAKGFNMPKDRVE 65
Query: 52 RNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPG 111
IKRAS K + F E VYE Y G+ +VVE T+ R+VA VR CGG + G
Sbjct: 66 AAIKRASSKEEGDFEEIVYEGYAMHGIPVVVECATNNSNRTVAMVRMHFNRCGGALGKTG 125
Query: 112 SVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 171
S+ F F R V ++ D D+L +DAGAED+ + E+ E+ V+ T
Sbjct: 126 SLEFMFDRTGVFELEADKVDMDELELDFIDAGAEDITTATIEV----EEGVEQEIIVIHT 181
Query: 172 S-DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+++ + L E GI + N + +P T ++DDE E +LI +L E DD+ VY
Sbjct: 182 KFEDFGQMQKFLEEKGIEPKKSN-IQRIPKNTQKLDDEQEEEVMKLIDRLEEEDDIQEVY 240
Query: 231 TD 232
+
Sbjct: 241 HN 242
>gi|386400260|ref|ZP_10085038.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. WSM1253]
gi|385740886|gb|EIG61082.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. WSM1253]
Length = 248
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A++ ++PKD +ER +K+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPNMNPRLRAAITAARQENMPKDNIERAVKKALGNDGENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R +V + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRTGIVEYDRSVASDDAVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DVI +E +++ ++++ Y D+ L F + L+
Sbjct: 156 IEAGADDVIS------------SEGGHEIYASTEGYRDVAKALE---AKFGEPRKAALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +LI L E DDV VY +
Sbjct: 201 KPQNTVAVDDETGEKLLKLIDLLNEHDDVQHVYAN 235
>gi|257068559|ref|YP_003154814.1| hypothetical protein Bfae_13930 [Brachybacterium faecium DSM 4810]
gi|256559377|gb|ACU85224.1| conserved hypothetical protein TIGR01033 [Brachybacterium faecium
DSM 4810]
Length = 254
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GGP+P N L ++KAK+ VP D ++R +KR + +YE Y GGV
Sbjct: 37 RMGGPDPAGNPTLFDAIQKAKKTSVPNDNIDRAVKRGGGLDGGGVDYETLMYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+V+ VR GG MAD GSV + F R VV + + +D LL++
Sbjct: 97 AVLVECLTDNKNRAVSEVRLAFNRNGGNMADSGSVAYLFERKGVVTVTKGEHSEDDLLEV 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE++ DE A ++++S + + + T L+EAG+ +++ ++ +
Sbjct: 157 VLDAGAEEI---------NDEGEA---FEILSEATDVVAVRTALQEAGVDYDSAE-AQFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P VD + LI L + DDV VY++
Sbjct: 204 PTMRTPVDLDGAHKALRLIEALEDSDDVQNVYSN 237
>gi|336325692|ref|YP_004605658.1| hypothetical protein CRES_1138 [Corynebacterium resistens DSM
45100]
gi|336101674|gb|AEI09494.1| hypothetical protein CRES_1138 [Corynebacterium resistens DSM
45100]
Length = 250
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P++N L + KAK+ VP D ++R +KR S E G + +YE YG GG
Sbjct: 36 ARTGGGDPSANPTLQDAITKAKKSSVPNDNIDRAVKRGSGEEAGGADWETIMYEGYGAGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ VR + GG MAD GSV ++F R VV + D +D +L
Sbjct: 96 VAMLIECLTDNRNRAATDVRTAMSKNGGNMADAGSVSYQFNRKGVVILDKADHTEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V D E+ ++VVS + + + L+EAGI +++ +
Sbjct: 156 AVLDAGAEEV-----------NDLGEK-FEVVSEPSDLSAVRDALKEAGIEYDSVE-PDF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T + VD + N +LI L + DDV ++T+
Sbjct: 203 RATTEVPVDAATAQKNLKLIDVLEDCDDVQNIFTN 237
>gi|400974682|ref|ZP_10801913.1| hypothetical protein SPAM21_01885 [Salinibacterium sp. PAMC 21357]
Length = 252
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 119/215 (55%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
K GG + + N L ++KAK+ VP D ++R +KR S + +A ++ +YE YG GV
Sbjct: 37 KIGGADLSGNPTLVDAIQKAKKTSVPNDNIDRAVKRGSGQLGDAIEYLNIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+++VE LTD R+ A VR ++ GG +ADPGSV + F R V++I T+ +D +L
Sbjct: 97 ALLVECLTDNKNRAAADVRTIMSRNGGSLADPGSVAYNFERKGVISITKTEGVTEDDILL 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E ++V++ + + + L+ AGI ++ +E
Sbjct: 157 AVLDAGAEEV-----------KDHGEG-FEVITDTAHLVESRDALQAAGIDYDASE-AEF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TIEVD + LI L E DDV +Y++
Sbjct: 204 VPNLTIEVDADTARKVLRLIEALEESDDVQNIYSN 238
>gi|385331784|ref|YP_005885735.1| protein YebC [Marinobacter adhaerens HP15]
gi|311694934|gb|ADP97807.1| protein YebC [Marinobacter adhaerens HP15]
Length = 247
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 119/215 (55%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE-AFIEKVYEVYGYGGV 78
++GG NP N L AV++KA ++ KD +ER ++R + G + + E+ YE YG GGV
Sbjct: 36 ARQGGGNPDDNPRLRAVIDKALTANMKKDTIERAVERGTGGGDDDNYEEQTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I VEV+TD RSVA +R GG + GSV + F + +++ + ++D+L++
Sbjct: 96 AIFVEVMTDNKNRSVAEIRHAFNKMGGNLGTDGSVAYLFSKQGIISYG-PEWEEDRLVEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
L AGAED+ +DD +++V+T + + D+ L AG+ DN +
Sbjct: 155 VLSAGAEDL----AAQDDGS-------WEIVTTPEQFLDVKESLVNAGLV--PDNAEVTM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T +E+D + E +LI L +LDDV VY +
Sbjct: 202 VPSTRVELDRDGAETILKLIDMLEDLDDVQNVYHN 236
>gi|320534406|ref|ZP_08034889.1| conserved hypothetical protein TIGR01033 [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133381|gb|EFW25846.1| conserved hypothetical protein TIGR01033 [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 254
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +PT N L ++KAK+ VP D + R +KR S E G + +YE YG GGV
Sbjct: 37 RTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+ +VE LTD R+ + VR GG +ADPGSV + F R VV + D D+D +L
Sbjct: 97 AFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVAYNFTRKGVVEVAKADGVDEDSILM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V ED E +++ S + + T L EAG+ +++ +
Sbjct: 157 AVLDAGAEEV-----------EDVGES-FEIYSEPGDIVAVRTALTEAGMDYDSAE-VQF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T +EVD E LI L + DDV VYT
Sbjct: 204 VAGTKVEVDVEGARKVFRLIDALEDSDDVQNVYT 237
>gi|340360135|ref|ZP_08682606.1| YebC like protein [Actinomyces sp. oral taxon 448 str. F0400]
gi|339883902|gb|EGQ73734.1| YebC like protein [Actinomyces sp. oral taxon 448 str. F0400]
Length = 252
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KA++ VP D + R +KR S E G + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLFDAIQKARKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPAG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R VV I TD D+D +L
Sbjct: 96 VAFLVECLTDNRNRAASDVRVAFTRTGGSLADPGSVAYNFTRKGVVEIAKTDGIDEDAIL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
LDAGAE+V+E ++V+S ++ + + + EAG+ +++ S
Sbjct: 156 MAVLDAGAEEVVE------------GRDSFEVISEPNDLIAVRSAVTEAGMDYDSAE-SH 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T IEV E LI L +LDDV V+T
Sbjct: 203 FVAGTKIEVGPEDARKVLRLIDALEDLDDVQNVFT 237
>gi|383821677|ref|ZP_09976913.1| hypothetical protein MPHLEI_20079 [Mycobacterium phlei RIVM601174]
gi|383332526|gb|EID11002.1| hypothetical protein MPHLEI_20079 [Mycobacterium phlei RIVM601174]
Length = 252
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 106/212 (50%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GG +P N L ++KAK+ VP D +ER KR S E G + YE YG GV++
Sbjct: 39 GGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGSGEEAGGADYQNITYEGYGPNGVAV 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
++E LTD R+ VR + GG MADPGSV + F R V+ + +D +L L
Sbjct: 99 LIECLTDNRNRAAGEVRVAMTRNGGSMADPGSVSYLFSRKGVITLDKNGLSEDDVLAAVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAEDV D E + + SD + T L+EAGI +E+ P
Sbjct: 159 DAGAEDV-----------NDLGESFEILCEPSD-LVAVRTALQEAGIDYESAEAG-FEPS 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ +D + +L+ L +LDDV VYT+
Sbjct: 206 VSVPLDADGARKIMKLVDALEDLDDVQNVYTN 237
>gi|381397390|ref|ZP_09922802.1| UPF0082 protein yeeN [Microbacterium laevaniformans OR221]
gi|380775375|gb|EIC08667.1| UPF0082 protein yeeN [Microbacterium laevaniformans OR221]
Length = 252
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 21/230 (9%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA 64
+ W + ++N+ K GGP+ N L + KAK+ VPKD ++R IKR + G E+
Sbjct: 23 KSWAK--LIKNIEVAAKLGGPDLQGNPTLFDAVLKAKKTSVPKDNIDRAIKRGAGIGGES 80
Query: 65 --FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ A VR + GG +ADPGSV + F R V
Sbjct: 81 VEYSSIMYEGYGPNGVALMIECLTDNKNRAAAEVRTALSRNGGTLADPGSVAYNFSRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
+ + + +D ++ AL+AGAE+ IEP + ++V++ + + + + L
Sbjct: 141 IVVSEENTSEDDVMLAALEAGAEE-IEPHA-----------QGFEVITEASDLVAVRSAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+AGI +E+ + E +P +E+D E LI L + DDV V+++
Sbjct: 189 TDAGIEYESAD-VEFVPNLKVEIDAETARKIFRLIDALEDSDDVQNVFSN 237
>gi|319954419|ref|YP_004165686.1| hypothetical protein [Cellulophaga algicola DSM 14237]
gi|319423079|gb|ADV50188.1| UPF0082 protein yeeN [Cellulophaga algicola DSM 14237]
Length = 236
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 118/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK GGP+P +N+ L AV++ AK +++PKD VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKDGGPDPDTNSRLRAVIQNAKAINMPKDNVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K F E ++E Y G++I+VE TD TR+VA VR C G M GSV F F
Sbjct: 73 DKSLGDFKEVLFEGYAPHGIAILVETATDNNTRTVANVRSYFNKCNGSMGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V DED Y S ++
Sbjct: 133 HTCNFRIPAEGIDPEELELEMIDFGAEEVF--------ADEDGILIYAPFESFGAIQKEL 184
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
T RE I +G E +P T E+++E ++L+ KL E DDV VY
Sbjct: 185 ET--RELEI---LSSGFERIPQVTKEINEEEAADVEKLLEKLEEDDDVQNVY 231
>gi|284991602|ref|YP_003410156.1| hypothetical protein Gobs_3179 [Geodermatophilus obscurus DSM
43160]
gi|284064847|gb|ADB75785.1| protein of unknown function DUF28 [Geodermatophilus obscurus DSM
43160]
Length = 250
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR + E G + YE Y GGV
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKSSVPNDNIDRAVKRGAGLEAGGVDYQTITYEGYAAGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
++++E LTD RS VR + GG MADPGSV + F R V+ + K D+D +L
Sbjct: 97 AVLIECLTDNKNRSAMEVRTAMTRNGGSMADPGSVSYLFSRKGVIVVPKSATVDEDTVLM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V + + DT ++VV + + T L++AGI +++ +
Sbjct: 157 AVLDAGAEEVRD----QGDT--------FEVVCEPTDLVAVRTALQDAGIDYDSADAG-F 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P ++E+D+EA LI L + DDV VY +
Sbjct: 204 VPSVSVELDEEAAGKVFRLIDALEDCDDVQNVYAN 238
>gi|167772172|ref|ZP_02444225.1| hypothetical protein ANACOL_03547 [Anaerotruncus colihominis DSM
17241]
gi|167665970|gb|EDS10100.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerotruncus
colihominis DSM 17241]
Length = 247
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 117/216 (54%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
++GGP+P +N+ LA ++ KAK +VP D +ER +K+A E G+E + E YE YG GV+
Sbjct: 36 AREGGPDPNNNSRLATLIAKAKANNVPNDNIERLLKKAGE-GKEDYEEITYEGYGPSGVA 94
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLLD 137
++VE LTD R+ +R CGG + GSV F F R ++ I+ D D+++++D
Sbjct: 95 LIVETLTDNRNRTAGDLRHYFDKCGGNLGQTGSVSFLFERRGMIYIENEDNRIDEEKVMD 154
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+ GA TD + + + + ++ + L+E G +++ +E
Sbjct: 155 DCFEVGA------------TDFNYEDGMITITTEPNDVPKVAAALQEKGYTYDSAE-AEY 201
Query: 198 LPITTIEVDDEAMELNKELIAKLL-ELDDVDAVYTD 232
+P+T ++DDEA+ E + LL E DDV VY +
Sbjct: 202 IPMTKSKIDDEALLQKMEKLLDLLEENDDVQNVYHN 237
>gi|343084398|ref|YP_004773693.1| hypothetical protein [Cyclobacterium marinum DSM 745]
gi|342352932|gb|AEL25462.1| UPF0082 protein yeeN [Cyclobacterium marinum DSM 745]
Length = 235
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 22/239 (9%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK+ + W + K + VK GGP+P +N L +++ AK +PKD +E
Sbjct: 8 RKERKFKRWSQMSKVFTRLGKEIVMAVKAGGPDPANNAKLRTIIQNAKGASMPKDRIEAA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
I RAS K ++ + E VYE YG G++++VE TD I R+VA VR GG + GSV
Sbjct: 68 ISRASNKDEKDYEEVVYEGYGPHGIAVIVETSTDNINRTVANVRHYFTKAGGSLGTSGSV 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F R V D D ++L +D G ED+ DE+ E + V + +
Sbjct: 128 SFTFDRKAVFRFAKADYDLEELELELIDFGLEDI----------DENEGEIF--VYTAFE 175
Query: 174 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ ++ L + GI + + P++T E+ E E ++I ++ E DDV+ VY +
Sbjct: 176 DFGNMQKALEDKGIEVISAE-MQRFPMSTTELTSEQEEDINKMIERMEEDDDVNHVYHN 233
>gi|406026871|ref|YP_006725703.1| hypothetical protein LBUCD034_1080 [Lactobacillus buchneri CD034]
gi|405125360|gb|AFS00121.1| hypothetical protein LBUCD034_1080 [Lactobacillus buchneri CD034]
Length = 243
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
KKG P+P +N L V+EKA+ ++PKD V+R I +AS G F E YE YG GG +
Sbjct: 36 AKKGDPDPENNPQLRLVMEKARAANMPKDNVQRAIDKASGIGGAKFEEITYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIK-FTDADKDQLLD 137
I+V LTD R+ AA+R GG + GSV + F R+ +V ++ D D+D +L
Sbjct: 96 IMVSALTDNKNRTAAAIRSAFTHHGGTLGTSGSVSYMFDRKGYIVILRDGLDTDEDTMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ T +D +++ + + D+ L+E G +T L
Sbjct: 156 DALDAGADDM--------KTSDDE----FEIFTDPKSMDDVRDALQEKGYDLDTAE-VRL 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P T EV ++ + LI +L E DDV VY
Sbjct: 203 FPENTTEVPEDKISQYTGLIDELAENDDVQDVY 235
>gi|373468587|ref|ZP_09559834.1| DNA-binding regulatory protein, YebC/PmpR family [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371766050|gb|EHO54330.1| DNA-binding regulatory protein, YebC/PmpR family [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 242
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 115/215 (53%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK +VP D +ER IK+A+ + + + YE YG GV
Sbjct: 36 VKEGGPDPNNNSRLRDVIAKAKANNVPNDTIERGIKKAAGDVNSVNYEQNTYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+VE LTD R+ A VR GG + PG V F F + +++ + D D D+L+
Sbjct: 96 AIIVETLTDNKNRTAANVRAAFTKGGGNIGTPGCVSFMFDKKGQIIIDKEECDMDPDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
ALD GAED E E+D+ Y++++ DN++ + L + GIP D
Sbjct: 156 MTALDLGAEDFNE----EEDS--------YEILTDPDNFSAVREGLEKLGIPM-ADAEVT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVY 230
++P + + DE I LL++ DDV VY
Sbjct: 203 MIPQNWVTLSDEEDIKKMNRILDLLDVEDDVQNVY 237
>gi|403250891|ref|ZP_10917277.1| hypothetical protein A27L6_000800000600 [actinobacterium SCGC
AAA027-L06]
gi|402915840|gb|EJX36777.1| hypothetical protein A27L6_000800000600 [actinobacterium SCGC
AAA027-L06]
Length = 252
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 117/216 (54%), Gaps = 17/216 (7%)
Query: 19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYG 76
+ + GG + + N L + KAK+ VP D ++R +KR + E G + + +YE Y G
Sbjct: 35 SARSGGADISGNPTLFDAIAKAKKNSVPADNIDRAVKRGAGLETGGKEWETIMYEGYAAG 94
Query: 77 GVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD--KDQ 134
GV++++E L+D R+ + VR V GG MADPGSV + F R VV + + +D
Sbjct: 95 GVALLIECLSDNRNRAASEVRVAVTRNGGNMADPGSVSYLFNRKGVVIVSKNNGKVTEDS 154
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
LL++ LDAGA++V +D E ++VV+ + + T L+ AGI +E+
Sbjct: 155 LLEVVLDAGADEV-------NDLGES-----FEVVAQPSDLVAVRTSLQTAGIDYESAET 202
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
S LP +I +D + + ELI + ELDDV VY
Sbjct: 203 S-FLPTMSIPIDADTAKKVFELIEAIEELDDVQNVY 237
>gi|350572171|ref|ZP_08940477.1| YebC like protein [Neisseria wadsworthii 9715]
gi|349790565|gb|EGZ44472.1| YebC like protein [Neisseria wadsworthii 9715]
Length = 242
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 15/213 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIV 81
GG +P SN L ++KA + ++PKD V+R I + + + A ++E YE YG GG +++
Sbjct: 39 GGGDPASNPRLRLAMDKAWDANMPKDNVQRAIDKGTGNVEGADYVELRYEGYGIGGAALM 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
V+ LTD TR+VA VR GG + G V F+F + FT+AD+D L++ AL+
Sbjct: 99 VDCLTDNKTRTVADVRHAFNKNGGNLGTDGCVAFQFEHQGY--LVFTNADEDALMEAALE 156
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDVI DD E +V++ ++ + T L EAG E + +
Sbjct: 157 AGAEDVI-----VDD------EGVIEVITAPADWAQVKTTLEEAGFKSEDGDVTMRAQND 205
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T+ ++A ++ K LI L +LDDV VYT +
Sbjct: 206 TVLTGEDAEKMQK-LIDALEDLDDVQNVYTSAV 237
>gi|312898903|ref|ZP_07758291.1| conserved hypothetical protein TIGR01033 [Megasphaera
micronuciformis F0359]
gi|310620065|gb|EFQ03637.1| conserved hypothetical protein TIGR01033 [Megasphaera
micronuciformis F0359]
Length = 255
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 117/218 (53%), Gaps = 22/218 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-----EAFIEKVYEVYG 74
V+ GG +PT N L L+KAKE ++PK+ NI RA +KG +++ E VYE YG
Sbjct: 45 VRMGGADPTGNMRLKLALQKAKENNIPKE----NINRAIQKGAGTLEGQSYEEIVYEGYG 100
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ V VLTD R+ A VR + GG M + G V + F+ + + D+D+
Sbjct: 101 PAGVALTVNVLTDNRNRAAADVRHLFSKHGGNMGETGCVSWMFKNLGLFVVAKDAVDEDK 160
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L+++ALDAGA+D+ + DE Y++V+T + Y + L + IP E
Sbjct: 161 LMEVALDAGADDI------RTEGDE------YEIVTTPEAYDTVEQALADHNIPTEHAQI 208
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P TTI + E + + +I +LDDV VY +
Sbjct: 209 T-MVPDTTIALSPEDAQKLENMIDAFDDLDDVQDVYHN 245
>gi|400294330|ref|ZP_10796125.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
naeslundii str. Howell 279]
gi|399900547|gb|EJN83507.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
naeslundii str. Howell 279]
Length = 254
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +PT N L ++KAK+ VP D + R +KR S E G + +YE YG GG
Sbjct: 36 ARTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R VV + D D+D +L
Sbjct: 96 VAFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVAYNFTRKGVVEVAKADGVDEDSIL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
LDAGAE+V ED E +++ S + + T L EAG+ +++ +
Sbjct: 156 MAVLDAGAEEV-----------EDMGES-FEIYSEPSDIVAVRTALTEAGMDYDSAE-VQ 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T +EVD + LI L + DDV VYT
Sbjct: 203 FVAGTKVEVDVDGARKVFRLIDALEDSDDVQNVYT 237
>gi|170016918|ref|YP_001727837.1| hypothetical protein LCK_00560 [Leuconostoc citreum KM20]
gi|414597070|ref|ZP_11446641.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE E16]
gi|421876542|ref|ZP_16308098.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE C10]
gi|421878230|ref|ZP_16309712.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE C11]
gi|169803775|gb|ACA82393.1| DUF28 domain-containing protein [Leuconostoc citreum KM20]
gi|372557619|emb|CCF24218.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE C10]
gi|390447844|emb|CCF25832.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE C11]
gi|390482184|emb|CCF28702.1| UPF0082 protein HMPREF0542_10160 [Leuconostoc citreum LBAE E16]
Length = 240
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V+EKAK ++PKD ++R + +AS G + F E YE YG GV+
Sbjct: 36 AKAGGADPEMNASLRLVVEKAKSANMPKDNIQRALDKASGAGGQKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK---FTDADKDQLL 136
I+VE TD I R+V+++R K GG + GSV F+F R + I F D D+D +L
Sbjct: 96 ILVETSTDNINRTVSSIRNSFKHFGGALGTTGSVAFQFDRKGYLAINRTDFPDLDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV + +++ +T ++ + L G FE +
Sbjct: 156 EAALEAGAEDV------------QTQDEVFEIYTTPADFQTVEAALTADGYVFEEAEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ E+ D+ + +L+ +L E +DV AVYT
Sbjct: 203 MIAQNPAEISDDDRDKLDKLVDELEENEDVLAVYT 237
>gi|383454476|ref|YP_005368465.1| hypothetical protein COCOR_02479 [Corallococcus coralloides DSM
2259]
gi|380728664|gb|AFE04666.1| hypothetical protein COCOR_02479 [Corallococcus coralloides DSM
2259]
Length = 249
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 14/211 (6%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIV 81
GG +P+SN L + A+E ++P+D +ER IK+ + E E++ E YE YG GGV+++
Sbjct: 39 GGGDPSSNARLRVAVALARESNIPRDTIERAIKKGTGELAGESYEEVTYEGYGPGGVALI 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
+E LTD RS + VR ++ + GG M G+V + F R V+ +K +DQ+++ ALD
Sbjct: 99 IECLTDNRNRSASDVRNLLSNYGGNMGAEGAVGWMFHRKGVITVK-PGPTEDQVMEQALD 157
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDV+ D+ ++V + + + KL AG+P + +P
Sbjct: 158 AGAEDVV-----------DQGPDGFEVRTAPADLHAVGAKLEAAGLPLGEQKWT-FVPQN 205
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T++V+ + + +L+ L + DDV V+ +
Sbjct: 206 TVKVEGDNAKRLLKLMDALDDNDDVQHVHAN 236
>gi|384565582|ref|ZP_10012686.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
glauca K62]
gi|384521436|gb|EIE98631.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
glauca K62]
Length = 249
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 112/215 (52%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP+D +ER KR + E G + YE Y GG
Sbjct: 36 ARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGADWQTITYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ + VR + GG +ADPGSV + F R VV + D +D +L
Sbjct: 96 VAVLIECLTDNKNRAASEVRTALSRNGGSLADPGSVAYLFNRKGVVVMPKNDLSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E+ Y+++S + + T L+EAG +E+ +
Sbjct: 156 AVLDAGAEEV-------NDLGEN-----YEIISEPGDLVAVRTALQEAGYDYESAD-MNF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP + +D E LI L + DDV VY++
Sbjct: 203 LPSVQVPLDAETARKVFRLIDALEDCDDVQNVYSN 237
>gi|374572896|ref|ZP_09645992.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. WSM471]
gi|374421217|gb|EHR00750.1| DNA-binding regulatory protein, YebC/PmpR family [Bradyrhizobium
sp. WSM471]
Length = 248
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A++ ++PKD +ER +K+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPNMNPRLRAAITAARQENMPKDNIERAVKKALGNDGENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R +V + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRTGIVEYDRSVASDDAVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DVI +E +++ ++++ Y D+ L F + L+
Sbjct: 156 IEAGADDVIS------------SEGGHEIYASTEGYRDVAKALE---AKFGEPRKAALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E L+ L E DDV VY +
Sbjct: 201 KPQNTVAVDDETAEKLLRLMDLLNEHDDVQHVYAN 235
>gi|408673243|ref|YP_006872991.1| UPF0082 protein yeeN [Emticicia oligotrophica DSM 17448]
gi|387854867|gb|AFK02964.1| UPF0082 protein yeeN [Emticicia oligotrophica DSM 17448]
Length = 239
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 124/244 (50%), Gaps = 25/244 (10%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK ++ WG+ K++ R VK GGP+P SN+ L A+++ AK ++PK VE
Sbjct: 8 RKARKMKRWGQMAKTFTRIGKDIAIAVKSGGPDPNSNSRLRAIMQNAKAANMPKANVENA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRAS K QE + E VYE YG GV+I+VE TD R+VA VR CGG + G +
Sbjct: 68 IKRASSKDQEDYKEVVYEGYGQHGVAILVECTTDNTNRTVANVRSYFSKCGGSLGTSGML 127
Query: 114 MFKFRRARVVNIKFTDADKD-QLLDIAL-DAGAEDVIEPPVNEDDTDEDRAERYYKVVST 171
F F R V I D D + L++ L D GAE+V D + ++ Y + +
Sbjct: 128 DFIFDRKSVFKIA-NDGKTDIEELELELIDFGAEEVFL------DEEANQINIYGEFTA- 179
Query: 172 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+ + E G FE + E +P T ++ DE ++LI KL E DDV VY
Sbjct: 180 ---FGALQKYFEEKG--FELLHADFERIPTDTKQLTDEQAADIEKLIEKLEEDDDVQNVY 234
Query: 231 TDQI 234
+ +
Sbjct: 235 HNMV 238
>gi|429204669|ref|ZP_19195952.1| hypothetical protein D271_03170 [Lactobacillus saerimneri 30a]
gi|428146892|gb|EKW99125.1| hypothetical protein D271_03170 [Lactobacillus saerimneri 30a]
Length = 242
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P SN L +++KA+ ++PKD ++R + +AS G E + E YE YG GV+
Sbjct: 36 AKSGGPDPDSNPQLRLMIDKARSANMPKDNIKRALDKASGAGGEDYEEITYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
I+V LTD R+ +AVR GG + + GSV F F R + I + D D+DQ+ +
Sbjct: 96 ILVHALTDNRNRTASAVRGDFNRNGGSLGETGSVSFMFNRKGYIAIAREGLDVDEDQMFE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
++AGAED+ A+ +++ + +TD+ +L E T + +
Sbjct: 156 DVIEAGAEDL------------QSADEVFEIYTDPKAFTDVKAEL-EKKYDLATAELT-M 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P TT+ V ++ +E LI KL + DDV V+T
Sbjct: 202 IPTTTVPVPEDKVEQLNRLIEKLEDEDDVSEVFT 235
>gi|395239403|ref|ZP_10417283.1| UPF0082 protein HMPREF0493_1079 [Lactobacillus gigeriorum CRBIP
24.85]
gi|394476498|emb|CCI87260.1| UPF0082 protein HMPREF0493_1079 [Lactobacillus gigeriorum CRBIP
24.85]
Length = 242
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 111/216 (51%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PKD +ER IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPALRLVIDKARSNNMPKDNIERAIKKAEGNSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
++VE LTD R+ +AVR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VLVEALTDNKNRTASAVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ DD +++ + + + L ++G SEL
Sbjct: 156 DVMDAGGDDL----QTSDDA--------FEIYTDPKQFAQVRDALEKSGYKLAV---SEL 200
Query: 198 --LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
LP T V E E + LI L + DDV VYT
Sbjct: 201 TMLPQNTTPVPAEKKEQFEHLIDALEDDDDVQNVYT 236
>gi|430004597|emb|CCF20396.1| conserved hypothetical protein; YebC-like [Rhizobium sp.]
Length = 248
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 19/238 (7%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q IR R + K G P+P +N+ L ++ AK +PKD ++R I
Sbjct: 11 MHRKGRQDAIRSKMFSKLAREITVAAKSGLPDPAANSALRLAIQNAKAQSMPKDNIDRAI 70
Query: 55 KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
K+AS E + YE YG GGV+++VE LTD R+ ++VR GG + + GSV
Sbjct: 71 KKASGADAENYDAVRYEGYGPGGVAVIVEALTDNRNRTASSVRSTFSKAGGALGETGSVS 130
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F F + K + D D++++ A++AGA+DV+ TDED V++ +
Sbjct: 131 FSFDHVGEITYKLSAGDADKMMEAAIEAGADDVV--------TDEDT-----HVITCAFE 177
Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TK EA + + P T+ VD+E + +LI L + DDV VY++
Sbjct: 178 SLGEVTKALEASLGEAETVKTVWKPQNTVPVDEEKAQSLMKLIDTLEDDDDVQNVYSN 235
>gi|383827888|ref|ZP_09982977.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
xinjiangensis XJ-54]
gi|383460541|gb|EID52631.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
xinjiangensis XJ-54]
Length = 249
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 113/215 (52%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP+D +ER KR + E G + YE Y GG
Sbjct: 36 ARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGADWQNITYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ + VR + GG +ADPGSV + F R VV + D +D +L
Sbjct: 96 VAVLIECLTDNKNRAASEVRTALTRNGGSLADPGSVAYLFNRKGVVLMPKNDLSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E+ Y+++S + + + T L+EAG +E+ +
Sbjct: 156 AVLDAGAEEV-------NDLGEN-----YEIISEAGDMVAVRTALQEAGYDYESAD-MNF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP + +D + LI L + DDV VY++
Sbjct: 203 LPSVNVPLDADNARKVFRLIEALEDCDDVQNVYSN 237
>gi|403049512|ref|ZP_10903996.1| hypothetical protein SclubSAR_03968 [SAR86 cluster bacterium
SAR86D]
Length = 245
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 18/233 (7%)
Query: 4 KQSCIRGWGRKSYLRNV---KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 60
+Q RG +R + KGGP+P N L L+KA ++PKD ++R I++ S
Sbjct: 16 RQDASRGKVWTKVIREITVAAKGGPDPDDNPRLRLALDKANAANMPKDNIKRAIEKGSGT 75
Query: 61 GQEAFIEK-VYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
G +E+ V E YG GGV+I+VE ++D R+V+ VR GG + GSV + F +
Sbjct: 76 GDTGALEEIVLEGYGPGGVAIMVEAMSDNRNRTVSDVRHAFSKFGGNLGTDGSVSYLFNK 135
Query: 120 ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
+++I + +++D +LDIAL+AGA+D+++ E Y++++++S + ++
Sbjct: 136 IGIIHIAKSYSEED-ILDIALEAGADDLVDE------------EDYFEIITSSSDLENVL 182
Query: 180 TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L+E I T+ L T++ VD E E +++ + ELDDV V+T+
Sbjct: 183 KSLKENNIE-NTNAELTLRAETSVSVDQEMSEKVLKIMDFMDELDDVQEVHTN 234
>gi|225181977|ref|ZP_03735410.1| protein of unknown function DUF28 [Dethiobacter alkaliphilus AHT 1]
gi|225167339|gb|EEG76157.1| protein of unknown function DUF28 [Dethiobacter alkaliphilus AHT 1]
Length = 251
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 15/221 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEV 72
K + V++GG +P +N L L+KA+ +++P D ++R I++ A E F E +YE
Sbjct: 30 KEIMAAVRQGGGDPNNNFRLRLALQKARSVNMPNDNIQRAIQKGAGELEGTNFEEIIYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG G ++++E+LTD R+ +R + GG + + G V + F R + + D+
Sbjct: 90 YGPAGTAVMLEILTDNRNRTAGEIRHIFSKSGGSLGETGCVAWMFNRRGYLEVSKEGHDE 149
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
D+L+ +ALDAGAED + E +++ + D++ + K+ GI F +
Sbjct: 150 DELMLLALDAGAEDF------------EAGENAFEIYTRPDDFEAVKEKMEAEGISF-GE 196
Query: 193 NGSELLPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
++P TT+EV D E + LI L + DDV YT+
Sbjct: 197 AAITMIPETTVEVPDVEGAKKALALIEALEDHDDVQNAYTN 237
>gi|390955239|ref|YP_006418997.1| YebC/PmpR family DNA-binding regulatory protein [Aequorivita
sublithincola DSM 14238]
gi|390421225|gb|AFL81982.1| DNA-binding regulatory protein, YebC/PmpR family [Aequorivita
sublithincola DSM 14238]
Length = 244
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 11/232 (4%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P +N+ L AV++ AK +++PK+ VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDANSRLRAVIQNAKAVNMPKENVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K F E ++E Y G+++++E TD TR+VA VR C G + GSV+F F
Sbjct: 73 DKSLGDFKEVLFEGYAQHGIAVLIETATDNNTRTVANVRMNFNKCNGSLGTSGSVVFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
+K D D ++L +D G E++ +ED E + + +++ I
Sbjct: 133 HTCNFRVKDNDFDLEELELELIDHGVEEIFR--------NEDEDEPGVMIYAPFESFGAI 184
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
L E I +G E +P T ++++E ++L+ +L E DDV VY
Sbjct: 185 QAYLEENNIEI-ISSGFERIPQVTKKLNEEEAADVEKLLERLEEDDDVQNVY 235
>gi|418676296|ref|ZP_13237580.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|418684915|ref|ZP_13246098.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|418742545|ref|ZP_13298916.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
gi|400323442|gb|EJO71292.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|410740663|gb|EKQ85378.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|410750203|gb|EKR07185.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
Length = 249
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 121/214 (56%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER +++ + E + E +YE +G GG++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAVRKGTGELEGVTYEECLYECFGPGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++F+ +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLEFSQISEDELVDVA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE + Y+V++T DNY + L E G+ E ++ +P
Sbjct: 157 VGGGAEDVI----NEGEV--------YRVITTPDNYESVLHALNEKGLKSE-ESEIRYIP 203
Query: 200 ITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
+ + E+ D E E +LI +L DDV +V ++
Sbjct: 204 LVSSEIADKEVAEKVMKLIDQLDGHDDVTSVTSN 237
>gi|163788406|ref|ZP_02182852.1| hypothetical protein FBALC1_08493 [Flavobacteriales bacterium
ALC-1]
gi|159876726|gb|EDP70784.1| hypothetical protein FBALC1_08493 [Flavobacteriales bacterium
ALC-1]
Length = 248
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 122/235 (51%), Gaps = 12/235 (5%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK GGP+P SN+ L A+++ AK +++PK VER IK+AS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKDGGPDPDSNSRLRAIIQNAKAVNMPKANVERAIKKAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
EKGQ + E ++E Y G++++VE TD TR+VA VR G + GSV+F F
Sbjct: 73 EKGQGDYKEVIFEGYAQHGIAVLVETATDNNTRTVANVRSYFNKTDGSLGTSGSVVFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDED---RAERYYKVVSTSDNY 175
IK D D ++L +D G E++ E DTDED E + + +++
Sbjct: 133 HTCNFKIKGEDLDLEELELELIDFGVEEIFE------DTDEDADGNEETSILIYAPFESF 186
Query: 176 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
I L E I +G E +P T + E ++L+ KL E DDV VY
Sbjct: 187 GKIQAYLEEHSIEI-ISSGFERIPQVTKAITAEQAADVEKLLEKLEEDDDVQNVY 240
>gi|229820480|ref|YP_002882006.1| hypothetical protein Bcav_1989 [Beutenbergia cavernae DSM 12333]
gi|259646543|sp|C5C5Q3.1|Y1989_BEUC1 RecName: Full=Probable transcriptional regulatory protein Bcav_1989
gi|229566393|gb|ACQ80244.1| protein of unknown function DUF28 [Beutenbergia cavernae DSM 12333]
Length = 252
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 117/215 (54%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR + E G + +YE Y GGV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKTSVPNDNIDRAVKRGAGLEAGGADYQTIMYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+++VE LTD R+ + VR GG +ADPGSV + F R VV + TD D+D +L
Sbjct: 97 AVLVECLTDNRNRAASDVRVAFTRNGGSLADPGSVSYLFSRRGVVVVPKTDGLDEDDVLG 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E ++V+S + + + T L++AG+ +++ ++
Sbjct: 157 AVLDAGAEEV-------NDLGE-----AFEVLSEATDLVAVRTALQDAGLDYDSAE-AQF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T IEVD + LI L + DDV V+ +
Sbjct: 204 VPATQIEVDVDGARKVLRLIDALEDSDDVQNVFAN 238
>gi|326773258|ref|ZP_08232541.1| conserved hypothetical protein [Actinomyces viscosus C505]
gi|343522336|ref|ZP_08759302.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 175 str. F0384]
gi|326636488|gb|EGE37391.1| conserved hypothetical protein [Actinomyces viscosus C505]
gi|343401745|gb|EGV14251.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 175 str. F0384]
Length = 254
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +PT N L ++KAK+ VP D + R +KR S E G + +YE YG GG
Sbjct: 36 ARTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R VV + D D+D +L
Sbjct: 96 VAFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVAYNFTRKGVVEVAKADGVDEDSIL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
L+AGAE+V ED E +++ S + + T L EAG+ +++ +
Sbjct: 156 MAVLEAGAEEV-----------EDMGES-FEIYSEPGDIVAVRTALTEAGMDYDSAE-VQ 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T +EVD E LI L + DDV VYT
Sbjct: 203 FVAGTKVEVDVEGARKVFRLIDALEDSDDVQNVYT 237
>gi|404379669|ref|ZP_10984723.1| UPF0082 protein [Simonsiella muelleri ATCC 29453]
gi|294483117|gb|EFG30804.1| UPF0082 protein [Simonsiella muelleri ATCC 29453]
Length = 245
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 15/215 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
++GG +P SN L ++KA + ++PKD V+R I + + + +IE YE YG GG +
Sbjct: 41 REGGGDPASNPRLRLAMDKAWDANMPKDNVQRAIDKGTGNLEGVDYIELRYEGYGIGGAA 100
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++V+ +TD TR+VA VR GG + G V F F + FTDAD+D+L++ A
Sbjct: 101 LMVDCMTDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGY--LVFTDADEDKLMEAA 158
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+AGAEDVI DD E +V++T ++ + + L AG + + +
Sbjct: 159 LEAGAEDVI-----VDD------EGIIEVITTPSDWASVKSALETAGFTSQAGDVTMRAQ 207
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T+ D+A+++ K L+ L LDDV VYT +
Sbjct: 208 NETVLTGDDAVKMQK-LLDALESLDDVQDVYTSAV 241
>gi|262375415|ref|ZP_06068648.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309669|gb|EEY90799.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 249
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 129/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + K GGP+ SN L AV+EKA +++ +D++ R I+R A
Sbjct: 16 KQDASRGKVFTKYIRELTTAAKLGGPDTASNPRLRAVVEKALSVNMTRDVINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV F F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTNGSVAFLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +DQ++++AL+AGAED+ V EDD V++T + + D
Sbjct: 136 KRG--EITFEDVSLEDQIMEVALEAGAEDI---EVTEDD---------ILVITTPEAFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDVQNVYTN 236
>gi|149371404|ref|ZP_01890890.1| hypothetical protein SCB49_10937 [unidentified eubacterium SCB49]
gi|149355542|gb|EDM44101.1| hypothetical protein SCB49_10937 [unidentified eubacterium SCB49]
Length = 247
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 126/233 (54%), Gaps = 7/233 (3%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK +++PKD VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKSVNMPKDNVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G+++++E TD TR+VA VR G + GSV+F F
Sbjct: 73 DKSQGDYKEVLFEGYAQHGIAVLIETATDNNTRTVANVRSYFNKTDGSLGTSGSVVFMFD 132
Query: 119 RARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+K D ++L +D G E++ E +EDDTD A + + +++
Sbjct: 133 HTCNFRVKAEGLIDLEELELELIDHGVEEIFEDKADEDDTD---AVDGVMIYAPFESFGS 189
Query: 178 ITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
I L E I +G E +P T ++ E +E ++L+ KL E DDV VY
Sbjct: 190 IQAYLEENNIEI-LSSGFERIPQVTKKLTAEQVEDVEKLLEKLEEDDDVQNVY 241
>gi|349574447|ref|ZP_08886397.1| YebC like protein [Neisseria shayeganii 871]
gi|348013993|gb|EGY52887.1| YebC like protein [Neisseria shayeganii 871]
Length = 242
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 19/215 (8%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIV 81
GG +PTSN L ++KA + ++PKD V+R I + + + +IE YE YG GG +++
Sbjct: 39 GGGDPTSNPRLRLAMDKAWDANMPKDNVQRAIDKGTGNLEGVDYIELRYEGYGIGGAALM 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
V+ +TD TR+VA VR GG + G V F F A + + DAD+D L++ AL+
Sbjct: 99 VDCMTDNKTRTVADVRHAFNKYGGNLGTDGCVAFNF--AHQGYLVYADADEDALMEAALE 156
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDVI V+ED E VV+ ++ + L AG FE+ +G +
Sbjct: 157 AGAEDVI---VDEDGIIE--------VVTAPADWAQVKAALEAAG--FESQDGDVTMRAQ 203
Query: 202 --TIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T+ +EA+++ K LI L +LDDV VYT +
Sbjct: 204 NETVLSGEEAVKMQK-LIDALEDLDDVQNVYTSAV 237
>gi|358447635|ref|ZP_09158152.1| hypothetical protein KYE_00115 [Marinobacter manganoxydans MnI7-9]
gi|357228138|gb|EHJ06586.1| hypothetical protein KYE_00115 [Marinobacter manganoxydans MnI7-9]
Length = 247
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE-AFIEKVYEVYGYGGV 78
++GG NP N L AV++KA ++ KD +ER ++R + G + + E YE YG GGV
Sbjct: 36 ARQGGGNPDDNPRLRAVIDKALTANMKKDTIERAVERGAGGGDDDNYEELTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I VEV+TD RSVA +R GG + GSV + F + +++ + ++D+L++
Sbjct: 96 AIFVEVMTDNKNRSVAEIRHAFNKMGGNLGTDGSVAYLFSKQGIISYG-PEWEEDRLVEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
L AGAED+ ED + +++V+T + + D+ L AG+ DN +
Sbjct: 155 VLSAGAEDL---AAQEDGS--------WEIVTTPEQFLDVKESLVNAGLV--PDNAEVTM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T +E+D + E +LI L +LDDV VY +
Sbjct: 202 VPSTRVELDRDGAETILKLIDMLEDLDDVQNVYHN 236
>gi|331701307|ref|YP_004398266.1| hypothetical protein Lbuc_0944 [Lactobacillus buchneri NRRL
B-30929]
gi|329128650|gb|AEB73203.1| UPF0082 protein yeeN [Lactobacillus buchneri NRRL B-30929]
Length = 243
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
KKG P+P +N L V+EKA+ ++PKD V+R I +AS G F E YE YG GG +
Sbjct: 36 AKKGDPDPENNPQLRLVMEKARAANMPKDNVQRAIDKASGIGGAKFEEITYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIK-FTDADKDQLLD 137
I+V LTD R+ AA+R GG + GSV + F R+ +V ++ D D+D +L
Sbjct: 96 IMVSALTDNKNRTAAAIRSAFTHHGGTLGTSGSVSYMFDRKGYIVILRDGLDTDEDTMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ T +D +++ + + D+ L+E G +T L
Sbjct: 156 DALDAGADDM--------KTSDDE----FEIFTDPKSMDDVRDALQEKGYDLDTAE-VRL 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P T EV ++ + LI +L E DDV VY
Sbjct: 203 FPENTTEVPEDKISQYTGLIDELEENDDVQDVY 235
>gi|344203758|ref|YP_004788901.1| hypothetical protein [Muricauda ruestringensis DSM 13258]
gi|343955680|gb|AEM71479.1| UPF0082 protein yeeN [Muricauda ruestringensis DSM 13258]
Length = 236
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P +N+ L AV++ AK +++PKD +ER IKRAS
Sbjct: 13 MKRWAAMSKAFTRIGKDIVMAVKEGGPDPDANSKLRAVIQNAKSVNMPKDNIERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G++I++E TD TR+VA +R C G + GSV F F
Sbjct: 73 DKNQGDYKEVLFEGYAPHGIAILIETATDNNTRTVANIRSYFNKCNGSLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V DED Y + +N+ I
Sbjct: 133 HTCNFTINGEGIDPEELELEMIDFGAEEVF--------VDEDGIHIY----APFENFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L I +G + +P T E+++E + ++L+ K+ E DDV V+
Sbjct: 181 QKELESREIEI-VSSGFDRIPQVTKELNEEEVADVEKLLEKIEEDDDVQNVF 231
>gi|357388391|ref|YP_004903230.1| hypothetical protein KSE_14460 [Kitasatospora setae KM-6054]
gi|311894866|dbj|BAJ27274.1| hypothetical protein KSE_14460 [Kitasatospora setae KM-6054]
Length = 251
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D + R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKSSVPIDNINRAVKRGSGAEAGGADYSTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
++++E LTD R+ + VR + GG MADPGSV + F R VV + D D+D++LD
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGNMADPGSVSYLFNRKGVVIVPKADGVDEDKILD 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+ LDAGAE+V D E ++V+S + + + T L +AGI +++ + +
Sbjct: 157 VVLDAGAEEV-----------NDLGEA-FEVMSEATDMVAVRTALVDAGIDYDSAD-ANF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P +E+D + +LI L + DDV V+ +
Sbjct: 204 VPSMQVELDADGARKIFKLIDALEDSDDVQNVFAN 238
>gi|398341191|ref|ZP_10525894.1| hypothetical protein LkirsB1_18633 [Leptospira kirschneri serovar
Bim str. 1051]
gi|418694629|ref|ZP_13255664.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. H1]
gi|421091569|ref|ZP_15552337.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. 200802841]
gi|421106936|ref|ZP_15567499.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. H2]
gi|421129010|ref|ZP_15589220.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. 2008720114]
gi|409957568|gb|EKO16474.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. H1]
gi|409999635|gb|EKO50323.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. 200802841]
gi|410008030|gb|EKO61706.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. H2]
gi|410359714|gb|EKP06773.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
kirschneri str. 2008720114]
Length = 249
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 121/214 (56%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER +++ + E + E +YE +G GG++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAVRKGTGELEGVTYEECLYECFGPGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++F+ +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLEFSQISEDELVDVA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE + Y+V++T DNY + L E G+ E ++ +P
Sbjct: 157 VGGGAEDVI----NEGEV--------YRVITTPDNYETVLHALNEKGLKSE-ESEIRYIP 203
Query: 200 ITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
+ + E+ D E E +LI +L DDV +V ++
Sbjct: 204 LVSSEIADKEVAEKVMKLIDQLDGHDDVTSVTSN 237
>gi|410583596|ref|ZP_11320701.1| DNA-binding regulatory protein, YebC/PmpR family [Thermaerobacter
subterraneus DSM 13965]
gi|410504458|gb|EKP93968.1| DNA-binding regulatory protein, YebC/PmpR family [Thermaerobacter
subterraneus DSM 13965]
Length = 248
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-SEKGQEAFIEKVYEVYGYGGV 78
V++GG +P +N L LE+A++ +P + +ER IKR E E + E VYE YG GGV
Sbjct: 36 VRQGGGDPEANPRLRLALERARQFSMPAENIERAIKRGLGESEAENYEELVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD-KDQLLD 137
++++E+LTD RS +R + GG + + G V + F R V+ + A +D LL
Sbjct: 96 ALMLEILTDNRNRSAGEIRHIFAKHGGNLGESGCVAWMFDRKGVITVSAQGAPAEDDLLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A++AGAED+ ED + + + + D+ + L +AG+P E D G +
Sbjct: 156 LAVEAGAEDL----KAEDGS--------FVIYTDPDDLHRVREALEKAGVPVE-DAGLRM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T ++V+ + E L+ L + DDV +Y +
Sbjct: 203 VPKTEVKVEGKEAEQLLRLLDALEDHDDVQEIYGN 237
>gi|88800177|ref|ZP_01115745.1| hypothetical protein MED297_13807 [Reinekea blandensis MED297]
gi|88777023|gb|EAR08230.1| hypothetical protein MED297_13807 [Reinekea sp. MED297]
Length = 240
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 119/214 (55%), Gaps = 16/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
K GGPNP N L +V++KA ++ +D +++ I R A + + YE Y GGV
Sbjct: 36 AKTGGPNPEDNPTLRSVIDKALGANMKRDTIDKAIARGAGNADGDNYEAMTYEGYSAGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++ V+ L+D R+V+ +R GG + GSV + F A + ++ A+++ L+++
Sbjct: 96 AVYVKCLSDNRNRTVSEIRHCFTKTGGNLGTDGSVAYLFSTAGQLFVE--KAEENALMEV 153
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDVI N+D + +++ + D++T + L EAG +E + ++
Sbjct: 154 ALEAGAEDVI---ANDDGS--------FEIRTQPDDFTSVRNALVEAG--YEPEGEVTMI 200
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T +V +A+E + LI L +LDDV AVYT+
Sbjct: 201 PSTETDVSGDAVETVQRLIDMLEDLDDVQAVYTN 234
>gi|377573390|ref|ZP_09802453.1| hypothetical protein MOPEL_021_00550 [Mobilicoccus pelagius NBRC
104925]
gi|377537933|dbj|GAB47618.1| hypothetical protein MOPEL_021_00550 [Mobilicoccus pelagius NBRC
104925]
Length = 256
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 19/218 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE Y GGV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKSSVPNDNIDRAVKRGSGAEAGGADWQTIMYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD----KDQ 134
++++E LTD R+ VR + GG +ADPGSV + F R VV + D +D
Sbjct: 97 AVLIECLTDNRNRAATEVRVALTRNGGSLADPGSVAYNFARKGVVVVPKEQKDGEITEDS 156
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
LL++ LDAGA++V ED D ++++S + ++ + T L+EAGI +++
Sbjct: 157 LLEVVLDAGADEV------EDYGDS------FRIISEASDFVAVRTALQEAGIDYDSAE- 203
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+E +P + +D E ++ L + DDV VY +
Sbjct: 204 AEFVPNLQVPLDVEGARKMMRVVDALEDSDDVQNVYVN 241
>gi|114321639|ref|YP_743322.1| hypothetical protein Mlg_2492 [Alkalilimnicola ehrlichii MLHE-1]
gi|114228033|gb|ABI57832.1| protein of unknown function DUF28 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 250
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 118/215 (54%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GGP+P SN L +++A ++PKD VER IKR + + E++ YE YG G
Sbjct: 40 ARMGGPDPDSNPRLRLAIDRAFAQNMPKDNVERAIKRGAGLDESVEYEELRYEGYGPSGA 99
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD R+V+ VR CGG + GSV + F+ R V + D+D+L++
Sbjct: 100 ALMVDCMTDNRNRTVSDVRHAFTKCGGNLGTDGSVSYLFQH-RGVLLYPPGTDEDRLMEA 158
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSEL 197
AL+AGAED++ N+DD+ E V++T ++Y + L AG+ P E+D +
Sbjct: 159 ALEAGAEDIVH---NDDDSLE--------VLTTPEDYRPVRDALVAAGLEPAESD--VTM 205
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + V+ E LI L +LDDV VYT+
Sbjct: 206 RPDIMVTVEGEDARRTARLIDMLEDLDDVQRVYTN 240
>gi|403714156|ref|ZP_10940119.1| putative transcriptional regulator [Kineosphaera limosa NBRC
100340]
gi|403211826|dbj|GAB94802.1| putative transcriptional regulator [Kineosphaera limosa NBRC
100340]
Length = 275
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 19/218 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +PT N L ++KAK+ VP D ++R +KR S E G + +YE Y GGV
Sbjct: 57 RTGGGDPTGNPTLYDAIQKAKKSSVPNDNIDRAVKRGSGAEGGGADWQTIMYEGYAPGGV 116
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD----KDQ 134
++++E LTD R+ A VR + GG +ADPGSV + F R VV + +D +D
Sbjct: 117 AVLIECLTDNRNRAAAEVRTALTRNGGNLADPGSVSYVFDRKGVVVVPKEQSDGALTEDG 176
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
LL++ L+AGAE+V +D E +++VS + ++ I +++AG+ +E+
Sbjct: 177 LLEVVLEAGAEEV-------NDLGES-----FEIVSEASDFVAIRQAVQQAGLDYESAE- 223
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+E +P +E+D E ++ L + DDV V+ +
Sbjct: 224 AEFVPNLQVELDVEGARKMMRVVDALEDSDDVQNVFVN 261
>gi|296170852|ref|ZP_06852413.1| YebC like protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894508|gb|EFG74249.1| YebC like protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 251
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGGADYQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR V GG MADPGSV + F R VV ++ +D +L
Sbjct: 97 AVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGSVSYLFTRKGVVTLEKNGLTEDDVLMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAEDV +D E ++++S + + T L++AGI +E+ S
Sbjct: 157 VLDAGAEDV-------NDLGES-----FEIISEPTDLVAVRTALQDAGIDYESAEAS-FQ 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ VD + +L+ L + DDV V+T+
Sbjct: 204 PSVSVPVDVDGARKVFKLVEALEDSDDVQNVWTN 237
>gi|187932598|ref|YP_001885207.1| hypothetical protein CLL_A1008 [Clostridium botulinum B str. Eklund
17B]
gi|188589174|ref|YP_001920338.1| hypothetical protein CLH_0943 [Clostridium botulinum E3 str. Alaska
E43]
gi|251779166|ref|ZP_04822086.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|226696039|sp|B2V2S0.1|Y943_CLOBA RecName: Full=Probable transcriptional regulatory protein CLH_0943
gi|226734047|sp|B2TML4.1|Y1008_CLOBB RecName: Full=Probable transcriptional regulatory protein CLL_A1008
gi|187720751|gb|ACD21972.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
gi|188499455|gb|ACD52591.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
gi|243083481|gb|EES49371.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 246
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K + VK GGP+P +N L ++ KAK ++P D + R+IK+AS E G + +YE
Sbjct: 30 KELMVAVKNGGPSPETNNRLRDIIAKAKAANMPNDTITRSIKKASGELGSVNYENIIYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GV+++VE LTD RS VR GG M G V F F+ + I+ D D+
Sbjct: 90 YGPSGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTQGCVGFMFQEKGEMVIEKADKDE 149
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ET 191
D+++ +ALDAGAED + DED + V +T +++ + L GI F E
Sbjct: 150 DEMMMLALDAGAEDF--------NADEDEV---FVVTTTPEDFGTVREALEAEGIEFLEA 198
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
D +++P T +D+ + ++++ L + +DV VY +
Sbjct: 199 D--VKMIPDTYTAIDEADAKKFQKMLDLLEDDEDVQEVYHN 237
>gi|241895679|ref|ZP_04782975.1| protein of hypothetical function DUF28 [Weissella paramesenteroides
ATCC 33313]
gi|241871046|gb|EER74797.1| protein of hypothetical function DUF28 [Weissella paramesenteroides
ATCC 33313]
Length = 240
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 117/215 (54%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P SN+ L V++KAK ++PKD ++R + +AS + E YE YG G++
Sbjct: 36 AKAGGVDPDSNSSLRLVIDKAKAANMPKDNIQRALDKASGANGANYQELTYEGYGPAGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF---TDADKDQLL 136
++VE LTD R+ ++VR K GG++ GSV F+F R + I+ T+ D+DQL
Sbjct: 96 VLVEALTDNTNRTASSVRSSFKHFGGELGTSGSVSFQFDRKGYLEIERDEDTEIDEDQLF 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ LDAGAED+ T +D+ +++ + ++ ++ L G F D +
Sbjct: 156 EDMLDAGAEDM--------KTFDDQ----FEIYTDPKSFPEVRDALAAKGYQFSIDEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + V ++ E L+A+L E DDV AV+T
Sbjct: 203 MVAQNPMAVPEDKQESLDNLVAELEENDDVQAVFT 237
>gi|453382577|dbj|GAC82872.1| putative transcriptional regulator [Gordonia paraffinivorans NBRC
108238]
Length = 251
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERARKRGAGEEAGGADWQTIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I++E LTD R+ VR + GG MADPGSV + F R VV ++ +D +L
Sbjct: 96 VAILIECLTDNRNRAAGEVRTAMSRNGGSMADPGSVSYLFARKGVVTLEKNGQTEDDILM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V D E +++VS + + T L+EAGI +++ S
Sbjct: 156 AVLDAGAEEVT-----------DLGES-FEIVSEPGDLVAVRTALQEAGIDYDSAEAS-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + VD + +LI L + DDV VY++
Sbjct: 203 RPSVEVAVDADGARKVFKLIDALEDCDDVQNVYSN 237
>gi|323702069|ref|ZP_08113737.1| protein of unknown function DUF28 [Desulfotomaculum nigrificans DSM
574]
gi|333923427|ref|YP_004497007.1| hypothetical protein Desca_1235 [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532951|gb|EGB22822.1| protein of unknown function DUF28 [Desulfotomaculum nigrificans DSM
574]
gi|333748988|gb|AEF94095.1| UPF0082 protein yeeN [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 244
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 117/213 (54%), Gaps = 16/213 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIV 81
GGP+P+ N L +EKAK ++P + ++R I++ + G+ F E YE YG GGV+I+
Sbjct: 39 GGPDPSGNMRLKTAIEKAKAANIPNENIQRAIQKGAGGGEGTNFDEFYYEGYGPGGVAIL 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLLDIA 139
++V TD R+ VR + GG + + G V MFK + +V+ T+ +D L+ +A
Sbjct: 99 LKVATDNRNRTAGEVRHIFSKHGGNLGETGCVSWMFKEKGVIIVDRSETNISEDDLMLLA 158
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+AGAED+ V ED +++ + ++ + + L E GIP D ++P
Sbjct: 159 LEAGAEDI---KVEEDS---------FEITTAPQDFEKVRSALVEQGIPV-ADAELSMVP 205
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TT+++ E E +++I L + DDV VYT+
Sbjct: 206 DTTVKLQGEEAEKMQKMIDLLEDNDDVQEVYTN 238
>gi|403738004|ref|ZP_10950732.1| putative transcriptional regulatory protein [Austwickia chelonae
NBRC 105200]
gi|403192116|dbj|GAB77502.1| putative transcriptional regulatory protein [Austwickia chelonae
NBRC 105200]
Length = 255
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 19/218 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S E G + YE Y GGV
Sbjct: 37 RTGGGDPAGNPTLYDAVQKAKKASVPNDNIDRAVKRGSGAEAGGADYQNITYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD----KDQ 134
++++E LTD R+ + VR + GG +ADPGSV + F R VV + D +D
Sbjct: 97 AVLIECLTDNRNRAASEVRVALTRNGGSLADPGSVSYLFTRKGVVMVPKAQKDGETTEDA 156
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
LL++ LDAGAE+V ED D ++++S + ++ + T L++AGI +++
Sbjct: 157 LLEVVLDAGAEEV------EDYGDS------FRILSEATDFVGVRTALQQAGIDYDSAE- 203
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+E +P + +D + L+ L + DDV V+ +
Sbjct: 204 AEFVPSVEVPLDVDGARRMMRLVDALEDSDDVQNVWVN 241
>gi|91978632|ref|YP_571291.1| hypothetical protein RPD_4171 [Rhodopseudomonas palustris BisB5]
gi|123762431|sp|Q130U9.1|Y4171_RHOPS RecName: Full=Probable transcriptional regulatory protein RPD_4171
gi|91685088|gb|ABE41390.1| protein of unknown function DUF28 [Rhodopseudomonas palustris
BisB5]
Length = 248
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A++ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVIAARQENMPKDNIERAIKKAIGGDSENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R V+ A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRTGVIEYDAGKASADDMLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV+ +E ++V ++ + + D+ L F + L+
Sbjct: 156 IEAGADDVLS------------SEGGHEVFASQETFRDVAKALE---AKFGEPRKAALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 201 KPQNTVAVDDETGEKLFKLMEHLNEHDDVQNVYAN 235
>gi|383769379|ref|YP_005448442.1| hypothetical protein S23_11120 [Bradyrhizobium sp. S23321]
gi|381357500|dbj|BAL74330.1| hypothetical protein S23_11120 [Bradyrhizobium sp. S23321]
Length = 248
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A++ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPNMNPRLRAAITAARQENMPKDNIERAIKKALGNEGENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRTGIIEYDRSVASDDAVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV+ E +++ ++++ Y D+ L F + L+
Sbjct: 156 IEAGADDVVS------------GEGGHEIYASTEGYRDVAKALE---AKFGEPRKAALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 201 KPQNTVAVDDETGEKLLKLMDLLNEHDDVQQVYAN 235
>gi|339008538|ref|ZP_08641111.1| hypothetical protein BRLA_c23420 [Brevibacillus laterosporus LMG
15441]
gi|338774338|gb|EGP33868.1| hypothetical protein BRLA_c23420 [Brevibacillus laterosporus LMG
15441]
Length = 248
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 17/234 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG 61
Q+K + R+ ++ K GGP+PT+N L A++ A+ +++P D +ER IK+A++ G
Sbjct: 16 QKKNNQYVKLARQIFVE-AKNGGPDPTANLKLKAIIANARAINMPNDNIERAIKKATDSG 74
Query: 62 QEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRA 120
Q E++ YE Y GGV+++VE L+D R+ A VR + GG M + GSV F F R
Sbjct: 75 QGDNYEEIRYEGYAPGGVAVIVECLSDNRNRTAADVRAIFGKRGGNMGETGSVSFMFDRK 134
Query: 121 RVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
V+ I + + D+D +L AL+AGAED+I V E++ ++V++ +
Sbjct: 135 GVIVIDREEFEVDEDTMLMQALEAGAEDLI---VTEEE---------FEVITHPHELEQV 182
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L F T+ + +P T+++ E E +++ E DDV VY +
Sbjct: 183 KHALETESYKF-TNAEIQWIPQNTVKISGEDAEKILKMMEAFEENDDVQNVYAN 235
>gi|291286411|ref|YP_003503227.1| hypothetical protein Dacet_0473 [Denitrovibrio acetiphilus DSM
12809]
gi|290883571|gb|ADD67271.1| protein of unknown function DUF28 [Denitrovibrio acetiphilus DSM
12809]
Length = 249
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIE-KVYEVYGYGGV 78
K GG +P N L L+KAK ++PKD VER IK+ + +G +A E VYE YG GGV
Sbjct: 36 AKIGGADPEMNPRLRVALDKAKSANLPKDNVERAIKKGTGEGNDAVYEDMVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ LT+ R+VA VR + GG M +PG V + F ++ I D++ L+++
Sbjct: 96 AILVKALTENKNRTVAEVRSTMSKKGGSMGEPGCVAWIFENKGLIEINKDSVDEETLMEL 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGA+DV V+E D ++VV+ Y + + E G+ S +
Sbjct: 156 ALEAGADDV----VDEGDV--------FQVVTEPSEYFTVKNAIEEKGLAMSFSEVS-MK 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TI + ++ + L +LDDV V+++
Sbjct: 203 PKNTIPLSGSDLKKLFTITEALEDLDDVQEVFSN 236
>gi|404495603|ref|YP_006719709.1| hypothetical protein Gmet_0743 [Geobacter metallireducens GS-15]
gi|418067852|ref|ZP_12705183.1| protein of unknown function DUF28 [Geobacter metallireducens RCH3]
gi|119369548|sp|Q39XN9.1|Y743_GEOMG RecName: Full=Probable transcriptional regulatory protein Gmet_0743
gi|78193218|gb|ABB30985.1| protein of unknown function DUF28 [Geobacter metallireducens GS-15]
gi|373558099|gb|EHP84461.1| protein of unknown function DUF28 [Geobacter metallireducens RCH3]
Length = 247
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 120/214 (56%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K GG +P N L + ++KAK ++PKD +ER IK+ + + + + E VYE YG GGV
Sbjct: 36 AKLGGGDPNGNPRLRSAVDKAKAENMPKDNIERAIKKGTGELEGVNYEEIVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE +TD R+V VR C G M + G V + F + ++ + DAD ++L ++
Sbjct: 96 AVLVECMTDNRNRTVGDVRSTFTKCNGNMGETGCVSWMFDKKGLIVVS-KDADFEKLFEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV DE E Y+V++ ++ ++ L +AG E+ + ++
Sbjct: 155 ALEAGAEDV---------ADE---EEQYEVLTDPSSFMEVREALEKAGFAHESAEIT-MI 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T +++D + E +L+ +L + DDV VY +
Sbjct: 202 PQTMVKLDGKNAENMLKLMDRLEDNDDVQNVYAN 235
>gi|374373435|ref|ZP_09631095.1| UPF0082 protein yeeN [Niabella soli DSM 19437]
gi|373234408|gb|EHP54201.1| UPF0082 protein yeeN [Niabella soli DSM 19437]
Length = 229
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 113/214 (52%), Gaps = 10/214 (4%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P +N L ++ AK +++PKD VE IKRA K E F E +YE YG GV+
Sbjct: 23 VKAGGPDPHTNAALRRCMQNAKSVNMPKDRVEAAIKRAQGKEMENFDEILYEGYGPHGVA 82
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE TD R+VA V+ GG + + GSV F+F + V + + + L
Sbjct: 83 VLVETATDNHVRTVANVKSHFNKGGGTLGNSGSVAFQFNKMGVFKLNPAGLNAEDLELEL 142
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSELL 198
+DAG E++ E TDE+ + V+ +D + ++ L E I P + E +
Sbjct: 143 IDAGLEELGE------STDENGKDILVARVAFND-FGNMQKALEERNITPISAE--VEWI 193
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT+ V DE E +LI +L + DDV V+ +
Sbjct: 194 PSTTVPVTDEQAEEVSKLIERLEQDDDVQKVFHN 227
>gi|116618556|ref|YP_818927.1| hypothetical protein LEUM_1461 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|339480802|ref|ZP_08656461.1| hypothetical protein LpseK3_03541 [Leuconostoc pseudomesenteroides
KCTC 3652]
gi|116097403|gb|ABJ62554.1| hypothetical protein LEUM_1461 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 240
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 117/217 (53%), Gaps = 20/217 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V+EKAK ++PK+ ++R + +AS F E YE YG GV+
Sbjct: 36 AKAGGADPDMNASLRLVVEKAKAANMPKENIQRALDKASGANGAKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLL 136
++VE TD I R+V++VR K GG + GSV F F R + I F D D+D +L
Sbjct: 96 VLVEASTDNINRTVSSVRNSFKHAGGALGTSGSVAFHFDRRGYLAIDRSAFPDLDEDTVL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAED+ T +D +++ + ++ + + L EAG FE +
Sbjct: 156 EAALEAGAEDM--------QTSDD----VFEIYTEPADFQAVESALTEAGYVFEDAEVTM 203
Query: 197 LL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ P+ +E D E ++ +L+ +L + +DV AVYT
Sbjct: 204 IAQNPMDILEEDREKLD---KLVDELEDNEDVLAVYT 237
>gi|375143655|ref|YP_005006096.1| hypothetical protein [Niastella koreensis GR20-10]
gi|361057701|gb|AEV96692.1| UPF0082 protein yeeN [Niastella koreensis GR20-10]
Length = 240
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 19/240 (7%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK + W R K + R VK GGP+P++N L + AK +++PKD VE
Sbjct: 8 RKHTMFARWDRMAKQFTRIGKEIAIAVKAGGPDPSTNPALRRCFQNAKSVNMPKDRVEAA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRAS K E F E +YE YG GV+I+VE TD R+VA ++ + G + + GSV
Sbjct: 68 IKRASGKEMENFDEILYEGYGPNGVAILVETATDNHVRTVANLKAIFNKGNGTLGNSGSV 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F+F++ V +K +D L +DAG E++ E T E+ E + +
Sbjct: 128 SFQFKKMGVFKLKPEGLSQDDLELELIDAGLEEMGE------GTGEN-GEPVLVIRVAFN 180
Query: 174 NYTDITTKLREAGI-PFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ ++ L E I P + E +P TT+++ +EA + +L+ K+ + DDV V+ +
Sbjct: 181 DFGNMQKALEEKNITPISAE--VEWIPGTTVQLGEEAAQEVLKLVDKIEQDDDVQKVFHN 238
>gi|88856268|ref|ZP_01130928.1| hypothetical protein A20C1_03191 [marine actinobacterium PHSC20C1]
gi|88814587|gb|EAR24449.1| hypothetical protein A20C1_03191 [marine actinobacterium PHSC20C1]
Length = 252
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 120/215 (55%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
K GG + + N L ++KAK+ VP D ++R +KR S + +A ++ +YE YG GV
Sbjct: 37 KIGGADLSGNPTLVDAIQKAKKTSVPNDNIDRAVKRGSGQLGDAIEYLNIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
++++E LTD R+ A VR ++ GG +ADPGSV + F R V++I T+ +D++L
Sbjct: 97 ALMIECLTDNKNRAAADVRTIMSRNGGSLADPGSVAYNFERKGVISITKTEGVTEDEILM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V ++ E ++V++ + + L+EAGI +++ +E
Sbjct: 157 AVLDAGAEEV-----------KNHGEG-FEVITDTAHLVQSRDALQEAGIDYDSSE-AEF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P +EVD + LI L E DDV +Y++
Sbjct: 204 VPNLKVEVDADTARKVFRLIDALEESDDVQNIYSN 238
>gi|227495491|ref|ZP_03925807.1| protein of hypothetical function DUF28 [Actinomyces coleocanis DSM
15436]
gi|226831038|gb|EEH63421.1| protein of hypothetical function DUF28 [Actinomyces coleocanis DSM
15436]
Length = 253
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KA++ VP D ++R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKARKNSVPGDNIDRAVKRGSGAEAGGADWETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+ +VE LTD R+ + VR G +ADPGSV + F R V+ + D D+D +
Sbjct: 97 AFLVECLTDNRNRAASDVRVAFTRNNGSLADPGSVAYLFTRKGVIEVPKADGVDEDTIFM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V D E+ ++V+S + + + T L EAGI +++ S
Sbjct: 157 TVLDAGAEEVT-----------DEGEK-FEVISEATDLVKVRTALVEAGIEYDSAEAS-F 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T +E+D E ++ +LI L + DDV +YT+
Sbjct: 204 VPATKVELDLEGVKKVLKLIDALEDSDDVQNIYTN 238
>gi|408356396|ref|YP_006844927.1| hypothetical protein AXY_10330 [Amphibacillus xylanus NBRC 15112]
gi|407727167|dbj|BAM47165.1| hypothetical protein AXY_10330 [Amphibacillus xylanus NBRC 15112]
Length = 240
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 119/216 (55%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEVYGYGGV 78
K+GG +P +N L ++KAK ++P + +ERNIK+A+ ++ E +YE YG GG
Sbjct: 36 AKEGGADPETNPALRLAIDKAKAQNMPNENIERNIKKATGTLDGVSYEEVIYEGYGPGGS 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+++VE+LTD RS A VR GG + + G V F F R V+ TDAD+D ++
Sbjct: 96 AVMVELLTDNKNRSAAEVRHAFSKSGGNLGENGCVSFLFNRKGYLVIERSKTDADEDTVM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
A++AGAE++ + TDE Y++ + +N+ ++ L G F+T +
Sbjct: 156 LAAIEAGAEEM-------ETTDE-----VYEIYTEPENFKEVRDALANEGFEFDTAELT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L+P T ++ ++ + LI +L +LDDV V+ +
Sbjct: 203 LIPTTYTQLSEDDQAKMERLIERLEDLDDVQDVHHN 238
>gi|125974565|ref|YP_001038475.1| hypothetical protein Cthe_2075 [Clostridium thermocellum ATCC
27405]
gi|256004074|ref|ZP_05429059.1| protein of unknown function DUF28 [Clostridium thermocellum DSM
2360]
gi|281419090|ref|ZP_06250107.1| protein of unknown function DUF28 [Clostridium thermocellum JW20]
gi|385780004|ref|YP_005689169.1| hypothetical protein Clo1313_2734 [Clostridium thermocellum DSM
1313]
gi|419721349|ref|ZP_14248513.1| UPF0082 protein yeeN [Clostridium thermocellum AD2]
gi|419726873|ref|ZP_14253893.1| UPF0082 protein yeeN [Clostridium thermocellum YS]
gi|166227516|sp|A3DH53.1|Y2075_CLOTH RecName: Full=Probable transcriptional regulatory protein Cthe_2075
gi|125714790|gb|ABN53282.1| protein of unknown function DUF28 [Clostridium thermocellum ATCC
27405]
gi|255991997|gb|EEU02094.1| protein of unknown function DUF28 [Clostridium thermocellum DSM
2360]
gi|281407239|gb|EFB37500.1| protein of unknown function DUF28 [Clostridium thermocellum JW20]
gi|316941684|gb|ADU75718.1| protein of unknown function DUF28 [Clostridium thermocellum DSM
1313]
gi|380769838|gb|EIC03738.1| UPF0082 protein yeeN [Clostridium thermocellum YS]
gi|380782519|gb|EIC12153.1| UPF0082 protein yeeN [Clostridium thermocellum AD2]
Length = 242
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P N+ L V+ KAK ++P + + R+IK+A+ E + E VYE YG GGV
Sbjct: 36 VKQGGPDPEVNSKLKDVIAKAKAANMPNETIMRSIKKAAGEVDSTNYEEVVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD-ADKDQLLD 137
+++VE TD R+ VR + GG + G V F F + V+ I+ +D ++D L+
Sbjct: 96 AVIVEATTDNRNRTAGEVRHLFDKFGGNLGTTGCVSFMFDKKGVILIEKSDKVNEDDLMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALD GAED T ED Y+++++ ++++ + L + G F + E+
Sbjct: 156 KALDLGAEDF---------TAED---EYFEIITAPEDFSKVREGLEKEGYEF-VEAEVEM 202
Query: 198 LPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
+P TT + D + +E +LI L +LDDV VY +
Sbjct: 203 VPQTTTTLTDPKHIEFMNKLIDSLEDLDDVQNVYHN 238
>gi|330466881|ref|YP_004404624.1| hypothetical protein VAB18032_14560 [Verrucosispora maris
AB-18-032]
gi|328809852|gb|AEB44024.1| hypothetical protein VAB18032_14560 [Verrucosispora maris
AB-18-032]
Length = 249
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++NV + GG +P N L ++KAK+ VP D ++R +KR S E G
Sbjct: 21 RGKMFAKLIKNVEVAARTGGGDPAGNPTLYDAIQKAKKNSVPNDNIDRAVKRGSGLEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG AD GSV + F R V
Sbjct: 81 ADYQTIMYEGYGPNGVALLIECLTDNRNRAATEVRTALTRNGGSFADAGSVSYMFSRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V + D +D ++ LDAGAE+V +D E ++VVS + + T L
Sbjct: 141 VIVPKADTSEDDVMLAVLDAGAEEV-------NDLGE-----AFEVVSEPGDLLAVRTAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++AGI +E+ S L+P + +D+E +LI L + DDV VY +
Sbjct: 189 QDAGIEYESAE-SSLIPSVNVPLDEEGARKVFKLIDVLEDCDDVQNVYAN 237
>gi|110833611|ref|YP_692470.1| hypothetical protein ABO_0750 [Alcanivorax borkumensis SK2]
gi|118574398|sp|Q0VRK0.1|Y750_ALCBS RecName: Full=Probable transcriptional regulatory protein ABO_0750
gi|110646722|emb|CAL16198.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 247
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 119/215 (55%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K GG P N L A ++KA ++ +D ++R +KR + + ++++ YE YG GGV
Sbjct: 36 AKMGGGEPNDNPRLRAAIDKALGQNMTRDTIDRAVKRGAGGDDDGSMDEITYEGYGKGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE +TD + R+VA VR GG + GSV F F + + + D+++L+++
Sbjct: 96 AVLVETMTDNVNRTVAEVRHAFSKFGGNLGTSGSVAFLFTKRGEIFFE-PGVDEEKLMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD-NYTDITTKLREAGIPFETDNGSEL 197
AL+AGAEDV E+ + + V++T D ++ ++ LR AG+ F + +
Sbjct: 155 ALEAGAEDV-----------EEMGDDGFLVITTPDKSFGEVVDSLRAAGLEF-AEAEVTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T E+D + E +++I L +LDDV VYT+
Sbjct: 203 HPSTEAEMDTDTAETVQKMIDMLEDLDDVQNVYTN 237
>gi|239618298|ref|YP_002941620.1| hypothetical protein Kole_1935 [Kosmotoga olearia TBF 19.5.1]
gi|259646525|sp|C5CGU7.1|Y1935_KOSOT RecName: Full=Probable transcriptional regulatory protein Kole_1935
gi|239507129|gb|ACR80616.1| protein of unknown function DUF28 [Kosmotoga olearia TBF 19.5.1]
Length = 252
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 118/217 (54%), Gaps = 20/217 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
++GG +P +N L A +E+AK ++PKD +E+ IK+ A E ++F+E +YEVY GGV
Sbjct: 36 AREGGTDPNTNNALRAAIERAKAANMPKDTMEKAIKKGAGELEGQSFVEALYEVYAPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQL 135
++++ LTD R+ +R ++ GG MA+ GSV + F R V+ + + +D D+ QL
Sbjct: 96 AMLIRALTDNKNRTAQEIRHLLSKHGGNMAESGSVAWMFERKGVITVPRSEISDMDEFQL 155
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
L A+DAGAED+ +D+ D R +++ + +++ L E G +
Sbjct: 156 L--AIDAGAEDI------QDEEDPVR------IITAPEEASNVKNALEENG--YTASYEL 199
Query: 196 ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T+ V E +L+ L + DDV VY +
Sbjct: 200 TYIPKNTVSVSGNDAEKLLKLLNVLEDNDDVQEVYAN 236
>gi|329120304|ref|ZP_08248972.1| YebC like protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327462645|gb|EGF08968.1| YebC like protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 282
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIV 81
GG +P SN L ++KA + ++PKD V+R I + + + A +IE YE YG GG +++
Sbjct: 80 GGGDPNSNPRLRLAMDKAWDANMPKDNVQRAIDKGTGNVEGAEYIELRYEGYGIGGAALM 139
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
V+ +TD TR+VA VR GG + G V F F + FTDAD+D L++ AL+
Sbjct: 140 VDCMTDNKTRTVADVRHAFSKNGGNLGTDGCVAFNFVHQGY--LVFTDADEDALMEAALE 197
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDV+ +DE E +V++ ++ + KL AG F++ +G +
Sbjct: 198 AGAEDVL--------SDE---EGIIEVITAPADWAGVKAKLEAAG--FKSQDGDVTMRAQ 244
Query: 202 --TIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T+ ++A ++ K LI L LDDV VYT +
Sbjct: 245 NETVLTGEDAAKMQK-LIDALENLDDVQNVYTSAV 278
>gi|260587636|ref|ZP_05853549.1| glucose-1-phosphate adenylyltransferase [Blautia hansenii DSM
20583]
gi|331084074|ref|ZP_08333181.1| hypothetical protein HMPREF0992_02105 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541901|gb|EEX22470.1| glucose-1-phosphate adenylyltransferase [Blautia hansenii DSM
20583]
gi|330402436|gb|EGG82006.1| hypothetical protein HMPREF0992_02105 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 242
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 112/209 (53%), Gaps = 16/209 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK ++P D +ER IK+A+ + + F YE YG GV
Sbjct: 36 VKEGGPDPANNSKLRDVIAKAKANNMPNDTIERGIKKAAGDSNADNFEVLTYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+VE LTD R+ VR G + PGSV F F + +++ + + D D L+
Sbjct: 96 AIIVETLTDNKNRTAGNVRSAFTKGNGNIGTPGSVSFMFDKKGQIIIDKEECEMDADDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
IALDAGAED E EDD+ ++V++ D+++ + L + GIP +
Sbjct: 156 MIALDAGAEDFAE----EDDS--------FEVLTAPDDFSAVREALEKEGIPM-VEAQVA 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDD 225
++P + + DE N + LLE DD
Sbjct: 203 MIPQNYVTLSDEQDIKNLQKTLDLLENDD 231
>gi|54025672|ref|YP_119914.1| hypothetical protein nfa37020 [Nocardia farcinica IFM 10152]
gi|60390874|sp|Q5YTE1.1|Y3702_NOCFA RecName: Full=Probable transcriptional regulatory protein NFA_37020
gi|54017180|dbj|BAD58550.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 251
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE YG G
Sbjct: 36 ARTGGGDPEGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGGADWQTIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ VR + GG MADPGSV + F R +V ++ +D +L
Sbjct: 96 VAVLIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFHRKGIVTLEKNGLSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E ++++S + + + L+ AGI +E+ S
Sbjct: 156 AVLDAGAEEV-------NDLGES-----FEIISEPGDLVAVRSALQSAGIDYESAE-SGF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ VD E +LI L + DDV VYT+
Sbjct: 203 QPSVSVAVDAEGARKVFKLIDALEDSDDVQNVYTN 237
>gi|336173509|ref|YP_004580647.1| hypothetical protein [Lacinutrix sp. 5H-3-7-4]
gi|334728081|gb|AEH02219.1| UPF0082 protein yeeN [Lacinutrix sp. 5H-3-7-4]
Length = 240
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P +N+ L AV++ AK +++PKD +ER IK+AS
Sbjct: 13 MKRWAAMSKAFTRIGKDIVMAVKEGGPDPDANSRLRAVIQNAKSVNMPKDNIERAIKKAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
EKGQ + E ++E Y G++I+VE TD TR+VA VR C G + GSV+F F
Sbjct: 73 EKGQGDYKEVIFEGYAPHGIAILVETATDNNTRTVANVRSYFNKCDGSLGTSGSVVFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V D+D Y + +++ I
Sbjct: 133 HTCNFRINAEGLDPEELELEFIDFGAEEVF--------ADDDGILIY----APFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L + I +G E +P T ++ E ++L+ K+ E DDV VY
Sbjct: 181 QAELEKREIEI-LSSGFERIPQVTKKITPEQQADVEKLLEKIEEDDDVQNVY 231
>gi|300813070|ref|ZP_07093448.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300495911|gb|EFK31055.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 243
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 114/216 (52%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PKD V+R IK+A E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPSLRLVMDKARAANMPKDNVQRAIKKAEGNSDEHYDEVTYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ ++VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 ILVEALTDNKNRTASSVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
++AG +D+ DD Y++ + + ++T + L +AG SEL
Sbjct: 156 DVMEAGGDDL----QTSDDA--------YEIYTDAKSFTAVRDALEKAGYQLAV---SEL 200
Query: 198 --LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E ++L+ L + DDV VYT
Sbjct: 201 TMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNVYT 236
>gi|210612602|ref|ZP_03289393.1| hypothetical protein CLONEX_01595 [Clostridium nexile DSM 1787]
gi|210151527|gb|EEA82534.1| hypothetical protein CLONEX_01595 [Clostridium nexile DSM 1787]
Length = 243
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 129/240 (53%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRG-----WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR 56
+ K +RG GR+ + + GGP+P +N+ L V+ KAK ++P D +ER+IK+
Sbjct: 14 KEKNDAVRGKIFTKIGRELAVAVKEGGGPDPANNSRLRDVIAKAKANNMPNDNIERSIKK 73
Query: 57 ASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMF 115
A+ + E V YE YG G +I+V+ LTD R+ + VR G + PG V F
Sbjct: 74 AAGDADASNYEHVTYEGYGPNGTAIIVDALTDNKNRTASNVRNAFTKGSGNVGTPGCVSF 133
Query: 116 KF-RRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F ++ +++ K + D D L+ ALDAGAED +E E+D+ +++++ D
Sbjct: 134 MFDKKGQIIVAKEECEMDADDLMMTALDAGAEDFVE----EEDS--------FEILTDPD 181
Query: 174 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVYTD 232
+++++ L EAGIP + + ++P T +++ DE N + LLE DDV VY +
Sbjct: 182 SFSEVRLTLEEAGIPMASAEVT-MIPQTWVQLTDETDLKNIQKTLDLLEEDDDVQEVYHN 240
>gi|451336896|ref|ZP_21907448.1| hypothetical protein C791_3963 [Amycolatopsis azurea DSM 43854]
gi|449420545|gb|EMD26021.1| hypothetical protein C791_3963 [Amycolatopsis azurea DSM 43854]
Length = 249
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 115/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP+D +ER KR + E G + YE YG GV
Sbjct: 37 RTGGGDPDGNPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGADWQTITYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + G +ADPGSV + F R VV + DA +D +L
Sbjct: 97 AVLIECLTDNKNRAAMEVRTALTRNNGSLADPGSVAYMFNRKGVVIMPKGDAAEDDVLMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D DE+ +++VS + + + L+EAG +E+ + + L
Sbjct: 157 VLDAGAEEV-------NDLDEN-----FEIVSEATDLVPVRKALQEAGFEYESADLT-FL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ +D E + +LI L + DDV VY +
Sbjct: 204 PTVSVPLDVEGAKKVFKLIDALEDCDDVQNVYAN 237
>gi|366090041|ref|ZP_09456407.1| hypothetical protein LaciK1_07704 [Lactobacillus acidipiscis KCTC
13900]
Length = 239
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 116/215 (53%), Gaps = 18/215 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P SN L +++KA+ ++PKD ++R I +AS + E YE YG GV+
Sbjct: 36 AKSGGPDPDSNPQLRLMMDKARSANMPKDNIKRAIDKASGANGADYEEITYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
+V LTD R+ +AVR GG + + GSV F F R + I + DAD+DQ+ +
Sbjct: 96 FLVHTLTDNRNRTASAVRADFSHNGGSLGESGSVSFMFDRKGYIAIVREGLDADEDQMFE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
+DAGA+D+ TD+D +++ + + ++ L++ +E +
Sbjct: 156 DVIDAGADDL--------QTDDD----VFEIYTDPKAFPEVRDALQKK---YELASAELT 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P TT+EV D+ +E + LI L + DDV VYT
Sbjct: 201 MVPKTTVEVPDDKLEKVQRLIDHLEDEDDVSEVYT 235
>gi|422845360|ref|ZP_16892070.1| glucose-1-phosphate adenylyltransferase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
gi|325684532|gb|EGD26696.1| glucose-1-phosphate adenylyltransferase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 243
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PKD ++R IK+A E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPSLRLVMDKARAANMPKDNIQRAIKKAEGNSDEHYDEVTYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ ++VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 ILVEALTDNKNRTASSVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
++AG +D+ DD Y++ + + ++T + L +AG SEL
Sbjct: 156 DVMEAGGDDL----QTSDDA--------YEIYTDAKSFTAVRDALEKAGYQLAV---SEL 200
Query: 198 --LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E ++L+ L + DDV VYT
Sbjct: 201 TMVPQNTTPVPADKKEQFEKLVEALEDDDDVSNVYT 236
>gi|269838390|ref|YP_003320618.1| hypothetical protein Sthe_2376 [Sphaerobacter thermophilus DSM
20745]
gi|269787653|gb|ACZ39796.1| protein of unknown function DUF28 [Sphaerobacter thermophilus DSM
20745]
Length = 248
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
V++GGPNP +N L LE+AK +P D +ER I +AS G +A + +YE YG GG
Sbjct: 36 VREGGPNPDANLRLRMALERAKREGMPNDTIERAIAKASGAGADAENYETVIYEGYGPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++ LTD R+ + VR G + + G V ++F + I D D++
Sbjct: 96 VAVLAVALTDNRNRTASEVRHAFSRHNGTLGETGCVAWQFETVGQIVISADGVDADEVAL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD--NYTDITTKLREAGIPFETDNGS 195
+A+DAGA DV E + E ++ T+D D+T +L+EAG+ +
Sbjct: 156 LAIDAGATDV------ETENGE--------IIITTDPSELGDVTERLKEAGLTIQAAE-I 200
Query: 196 ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +P +++VD + +L+ L +LDDV AVYT+
Sbjct: 201 QRVPQASVDVDGSQAQATLKLLEALEDLDDVQAVYTN 237
>gi|365827406|ref|ZP_09369267.1| hypothetical protein HMPREF0975_01050 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265161|gb|EHM94937.1| hypothetical protein HMPREF0975_01050 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 254
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +PT N L ++KAK+ VP D + R +KR S E G + +YE YG GGV
Sbjct: 37 RTGGGDPTGNPTLFDAIQKAKKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+ +VE LTD R+ + VR GG +ADPGSV + F R VV + D D+D +L
Sbjct: 97 AFLVECLTDNRNRAASDVRVAFSRNGGNLADPGSVAYNFTRKGVVEVAKADGVDEDSILM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V ED E +++ S + + T L +AG+ +++ +
Sbjct: 157 AVLDAGAEEV-----------EDMGES-FEIYSEPGDIVAVRTALTDAGMDYDSAE-VQF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T +EVD + LI L + DDV VYT
Sbjct: 204 VAGTKVEVDVDGARKVFRLIDALEDSDDVQNVYT 237
>gi|402494357|ref|ZP_10841099.1| hypothetical protein AagaZ_08631 [Aquimarina agarilytica ZC1]
Length = 238
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 119/236 (50%), Gaps = 15/236 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK ++PKD VER IK+AS
Sbjct: 13 MKRWSAMAKTFTRIGKDIVMAVKEGGPDPASNSRLRAVIQNAKAANMPKDNVERAIKKAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G++I+VE TD R+VA VR C G + GSV F F
Sbjct: 73 DKDQGDYKEVLFEGYAPHGIAILVETATDNNNRTVANVRAAFNKCNGNLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE++ E DED Y S + I
Sbjct: 133 HTCNFRINADGIDVEELELEFIDFGAEEIFE--------DEDGVLIYAPFGS----FGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
+L I +G E +P T E+ +A+ ++L+ KL E DDV VY +
Sbjct: 181 QKELENRNIEI-LSSGFERIPQVTKELSGDALADVEKLLEKLEEDDDVQNVYHSMV 235
>gi|296112955|ref|YP_003626893.1| hypothetical protein MCR_0733 [Moraxella catarrhalis RH4]
gi|416155528|ref|ZP_11603940.1| hypothetical protein E9Y_00651 [Moraxella catarrhalis 101P30B1]
gi|416217329|ref|ZP_11624278.1| hypothetical protein E9G_05039 [Moraxella catarrhalis 7169]
gi|416222470|ref|ZP_11626121.1| hypothetical protein E9K_05054 [Moraxella catarrhalis 103P14B1]
gi|416230075|ref|ZP_11628223.1| hypothetical protein E9M_05798 [Moraxella catarrhalis 46P47B1]
gi|416232611|ref|ZP_11629006.1| hypothetical protein E9O_00390 [Moraxella catarrhalis 12P80B1]
gi|416238615|ref|ZP_11631495.1| hypothetical protein E9Q_04394 [Moraxella catarrhalis BC1]
gi|416241232|ref|ZP_11632613.1| hypothetical protein E9S_00330 [Moraxella catarrhalis BC7]
gi|416247675|ref|ZP_11635858.1| hypothetical protein E9U_07636 [Moraxella catarrhalis BC8]
gi|416250700|ref|ZP_11637380.1| hypothetical protein E9W_05929 [Moraxella catarrhalis CO72]
gi|416254542|ref|ZP_11638808.1| hypothetical protein EA1_03605 [Moraxella catarrhalis O35E]
gi|421779771|ref|ZP_16216263.1| hypothetical protein MCRH_0799 [Moraxella catarrhalis RH4]
gi|295920649|gb|ADG61000.1| conserved hypothetical protein [Moraxella catarrhalis BBH18]
gi|326561180|gb|EGE11545.1| hypothetical protein E9G_05039 [Moraxella catarrhalis 7169]
gi|326561619|gb|EGE11957.1| hypothetical protein E9M_05798 [Moraxella catarrhalis 46P47B1]
gi|326563982|gb|EGE14231.1| hypothetical protein E9K_05054 [Moraxella catarrhalis 103P14B1]
gi|326567632|gb|EGE17740.1| hypothetical protein E9O_00390 [Moraxella catarrhalis 12P80B1]
gi|326567932|gb|EGE18029.1| hypothetical protein E9Q_04394 [Moraxella catarrhalis BC1]
gi|326569487|gb|EGE19547.1| hypothetical protein E9U_07636 [Moraxella catarrhalis BC8]
gi|326572749|gb|EGE22735.1| hypothetical protein E9S_00330 [Moraxella catarrhalis BC7]
gi|326574031|gb|EGE23980.1| hypothetical protein E9W_05929 [Moraxella catarrhalis CO72]
gi|326577002|gb|EGE26897.1| hypothetical protein E9Y_00651 [Moraxella catarrhalis 101P30B1]
gi|326577472|gb|EGE27356.1| hypothetical protein EA1_03605 [Moraxella catarrhalis O35E]
gi|407813481|gb|EKF84263.1| hypothetical protein MCRH_0799 [Moraxella catarrhalis RH4]
Length = 249
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 130/242 (53%), Gaps = 30/242 (12%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ KQ +G +R + K G P+P +N L AVLEKA ++ KD+++R I+R
Sbjct: 14 KAKQDAAKGKIFTKIIREIVSAAKSGDPDPANNPRLRAVLEKANAANMTKDVIKRAIERG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ G +E++ YE YG GGV+++VE +TD + R+V VR GG + GSV +
Sbjct: 74 AGGGDNDNMEEITYEGYGIGGVAVIVETMTDNVNRTVGEVRHAFSKNGGNLGTSGSVAYL 133
Query: 117 F-RRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F +R ++ F D +D +++IAL+AGAED+ E+ E + S +D
Sbjct: 134 FSKRGEII---FHDLSLEDSIMEIALEAGAEDI-----------ENDGESLLVITSPAD- 178
Query: 175 YTDITTKLREAGIPFETDNGSE--LLPITTIEVD--DEAMELNKELIAKLLELDDVDAVY 230
+ + L AG+ T N E + P TT ++D D+A ++ K +I L +LDDV VY
Sbjct: 179 FGTVVDALIAAGL---TPNSMEVTMSPSTTADIDNIDDAQKVLK-MIDMLEDLDDVQEVY 234
Query: 231 TD 232
T+
Sbjct: 235 TN 236
>gi|442805800|ref|YP_007373949.1| hypothetical protein Cst_c23790 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741650|gb|AGC69339.1| hypothetical protein Cst_c23790 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 242
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 120/216 (55%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK GGP+P +N+ L + KAK ++P + + R+IK+A+ + + + E VYE YG GGV
Sbjct: 36 VKAGGPDPETNSRLKDAIAKAKANNMPNENIMRSIKKAAGDISTDDYEEIVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLD 137
+I+VE LT+ R+ +R + GG + G V F F +R +++ K D+D L+
Sbjct: 96 AIIVETLTNNRNRTAGDIRHIFDKYGGNLGTTGCVSFMFDKRGQIIIEKNDSIDEDSLMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGA DV ED+ YY++++ +++ + L + G FE+ + +
Sbjct: 156 SALEAGALDV----AVEDE--------YYEIITEPQDFSKVADALEKEGYKFESAEVA-M 202
Query: 198 LPITTIEVDDEAMELNKE-LIAKLLELDDVDAVYTD 232
+P TT + +E M N E LI KL + DDV +Y +
Sbjct: 203 IPKTTTTLTNEEMIANMEKLIEKLEDHDDVQNIYHN 238
>gi|390443624|ref|ZP_10231412.1| hypothetical protein A3SI_05809 [Nitritalea halalkaliphila LW7]
gi|389666227|gb|EIM77681.1| hypothetical protein A3SI_05809 [Nitritalea halalkaliphila LW7]
Length = 217
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 115/214 (53%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P +N L V++ AK +PKD +E IKRAS K ++ + E +YE YG G++
Sbjct: 16 VKAGGPDPATNAKLRTVIQNAKGAAMPKDRIEAAIKRASNKDEKDYEEVLYEGYGPYGIA 75
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE TD R+VA VR GG + GSV F F R V D + ++L
Sbjct: 76 ILVETSTDNTNRTVANVRHYFSKYGGSLGTSGSVSFMFTRKAVFRFPQNDLNIEELELEL 135
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+D G E++ E NE + + + +++ ++ L E GI T+ + P
Sbjct: 136 IDFGLEELAE---NEGE---------FFAYTAFEDFGNMQKALEERGIEV-TNADFQWFP 182
Query: 200 ITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
TTI +D+ + ELNK LI K+ E DDV+ V+T+
Sbjct: 183 STTIALDEAQEEELNK-LIEKIEEDDDVNQVFTN 215
>gi|342217511|ref|ZP_08710153.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera sp.
UPII 135-E]
gi|341593858|gb|EGS36676.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera sp.
UPII 135-E]
Length = 242
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 24/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +P N L L+KAKE ++PKD NIKRA +KG A + + VYE YG
Sbjct: 36 VRMGGSDPVGNMRLKLALQKAKENNIPKD----NIKRAIQKGAGATEGQKYEDIVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ V VLTD R+ A VR V G M + G V + F + + T AD+D
Sbjct: 92 PAGVAVTVNVLTDNRNRAAAEVRHVFSKYGSGMGETGCVGWMFHSKGIFGVSKTQADEDT 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
++++ALDAGA+DV + +++V+ D + + L E I ET++
Sbjct: 152 VMEVALDAGADDV------------KTGDNEFEIVTAPDVFDAVEQALVEHQI--ETEHA 197
Query: 195 S-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T I ++++ E + LI L +LDDV VY +
Sbjct: 198 QITMVPDTMITLNEQDAEKMEILIDALEDLDDVQDVYHN 236
>gi|302866744|ref|YP_003835381.1| hypothetical protein Micau_2261 [Micromonospora aurantiaca ATCC
27029]
gi|315503159|ref|YP_004082046.1| hypothetical protein ML5_2373 [Micromonospora sp. L5]
gi|302569603|gb|ADL45805.1| protein of unknown function DUF28 [Micromonospora aurantiaca ATCC
27029]
gi|315409778|gb|ADU07895.1| protein of unknown function DUF28 [Micromonospora sp. L5]
Length = 249
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKNSVPNDNIDRAVKRGSGLEAGGADWQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG +AD GSV + F R VV + +D ++
Sbjct: 97 AMLIECLTDNRNRAATEVRTALTRNGGSLADAGSVSYMFSRKGVVIVPKAGTSEDDVMMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E Y+VVS + + T L++AGI +E+ S L+
Sbjct: 157 VLDAGAEEV-------NDLGE-----AYEVVSEPGDLVAVRTALQDAGIEYESAE-SSLI 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + +D+E +LI L + DDV VY +
Sbjct: 204 PSVNVPLDEEGARKIFKLIDVLEDCDDVQNVYAN 237
>gi|341821081|emb|CCC57416.1| UPF0082 protein HMPREF0877_0949 [Weissella thailandensis fsh4-2]
Length = 240
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 118/215 (54%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P +N+ L V++KAK ++PKD ++R + +AS + E YE YG G++
Sbjct: 36 AKAGGADPETNSGLRLVVDKAKAANMPKDNIQRALDKASGANGANYQELTYEGYGPAGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF---TDADKDQLL 136
I+VE LTD R+ ++VR K GG++ GSV F+F R + I+ T+ D+DQLL
Sbjct: 96 ILVEALTDNTNRTASSVRSSFKHFGGELGTSGSVSFQFDRKGYIEIERDEDTEIDEDQLL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ LDAGA+D+ T +D+ +++ + + ++ L E G F D +
Sbjct: 156 EDMLDAGADDM--------KTFDDQ----FEIYTDPKAFPEVRAALAEKGYEFSMDEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + V ++ E L+A+L + +DV AV+T
Sbjct: 203 MIAQNPMAVPEDKQESLANLVAELEDNEDVQAVFT 237
>gi|376295813|ref|YP_005167043.1| hypothetical protein DND132_1026 [Desulfovibrio desulfuricans
ND132]
gi|323458374|gb|EGB14239.1| protein of unknown function DUF28 [Desulfovibrio desulfuricans
ND132]
Length = 248
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 17/215 (7%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K + K GG NP N+ L ++KAK +++PKD +E IK+ + E E +YE
Sbjct: 30 KDIILAAKAGGGNPDDNSTLRLAIQKAKAVNLPKDRIENAIKKGTGELAGGDLAEIMYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GGV+++VEV TD R+VA +R GG MAD GSV + F R V+ +
Sbjct: 90 YGPGGVAMLVEVATDNKNRTVAEIRHAFSKHGGNMADSGSVSYMFSRKGVIVFTKDKYTE 149
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
DQL+++ L+AGAED+I+ +DD+ + V + ++ + +AG+ FE+
Sbjct: 150 DQLMEVGLEAGAEDIID----DDDS--------FTVHTAPTDFMAVQQAFTDAGMEFESA 197
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 227
++ +P + VD + + K+++ LDD D
Sbjct: 198 EFNQ-VPENLVPVD---VSVGKKVMNLFDALDDND 228
>gi|259501480|ref|ZP_05744382.1| glucose-1-phosphate adenylyltransferase [Lactobacillus iners DSM
13335]
gi|302191551|ref|ZP_07267805.1| hypothetical protein LineA_06049 [Lactobacillus iners AB-1]
gi|309803904|ref|ZP_07697988.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 11V1-d]
gi|309806210|ref|ZP_07700226.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 03V1-b]
gi|309808350|ref|ZP_07702253.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 01V1-a]
gi|309809489|ref|ZP_07703347.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners SPIN 2503V10-D]
gi|312871681|ref|ZP_07731770.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 3008A-a]
gi|312872829|ref|ZP_07732892.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2062A-h1]
gi|312873671|ref|ZP_07733717.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2052A-d]
gi|312875256|ref|ZP_07735265.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2053A-b]
gi|315653329|ref|ZP_07906251.1| glucose-1-phosphate adenylyltransferase [Lactobacillus iners ATCC
55195]
gi|325911877|ref|ZP_08174281.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners UPII 143-D]
gi|325913061|ref|ZP_08175432.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners UPII 60-B]
gi|329920006|ref|ZP_08276884.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners SPIN 1401G]
gi|349612389|ref|ZP_08891610.1| hypothetical protein HMPREF1027_01037 [Lactobacillus sp. 7_1_47FAA]
gi|259167111|gb|EEW51606.1| glucose-1-phosphate adenylyltransferase [Lactobacillus iners DSM
13335]
gi|308163999|gb|EFO66262.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 11V1-d]
gi|308167429|gb|EFO69592.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 03V1-b]
gi|308168413|gb|EFO70528.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 01V1-a]
gi|308170161|gb|EFO72196.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners SPIN 2503V10-D]
gi|311089219|gb|EFQ47654.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2053A-b]
gi|311090771|gb|EFQ49169.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2052A-d]
gi|311091638|gb|EFQ50019.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 2062A-h1]
gi|311092781|gb|EFQ51136.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LEAF 3008A-a]
gi|315489254|gb|EFU78894.1| glucose-1-phosphate adenylyltransferase [Lactobacillus iners ATCC
55195]
gi|325476383|gb|EGC79545.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners UPII 143-D]
gi|325477617|gb|EGC80758.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners UPII 60-B]
gi|328936777|gb|EGG33217.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners SPIN 1401G]
gi|348608985|gb|EGY58952.1| hypothetical protein HMPREF1027_01037 [Lactobacillus sp. 7_1_47FAA]
Length = 243
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 109/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PK +ER IK+A E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPSLRLVMDKARAANMPKSNIERAIKKAEGNSDEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
++VE LTD R+ +AVR GG M GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VLVEALTDNKNRTASAVRVAFTRNGGTMGATGSVAYMFDRKGYIVIDRSTTDADEDQVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ DD +++ + +T + L +AG D +
Sbjct: 156 DVMDAGGDDLQA----SDDA--------FEIYTDPKAFTGVRDALEKAGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V E E + LI L + DDV VYT
Sbjct: 203 VPQNTTAVPAEKKEQFERLIDALEDDDDVSNVYT 236
>gi|313123374|ref|YP_004033633.1| glucose-1-phosphate adenylyltransferase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312279937|gb|ADQ60656.1| Glucose-1-phosphate adenylyltransferase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 243
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PKD ++R IK+A E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPSLRLVMDKARAANMPKDNIQRAIKKAEGNSDEHYDEVTYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ ++VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 ILVEALTDNKNRTASSVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
++AG +D+ DD Y++ + + ++T + L +AG SEL
Sbjct: 156 DVMEAGGDDL----QTSDDA--------YEIYTDAKSFTAVRDALEKAGYQLAV---SEL 200
Query: 198 --LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E ++L+ L + DDV VYT
Sbjct: 201 TMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNVYT 236
>gi|238063855|ref|ZP_04608564.1| hypothetical protein MCAG_04821 [Micromonospora sp. ATCC 39149]
gi|237885666|gb|EEP74494.1| hypothetical protein MCAG_04821 [Micromonospora sp. ATCC 39149]
Length = 249
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKNSVPNDNIDRAVKRGSGLEAGGADWQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG +AD GSV + F R VV + +D ++
Sbjct: 97 AMLIECLTDNRNRAATEVRTALTRNGGSLADAGSVSYMFSRKGVVIVPKAGTSEDDVMMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E Y+V+S + + + T L++AGI +E+ S L+
Sbjct: 157 VLDAGAEEV-------NDLGE-----AYEVISEATDLIAVRTALQDAGIEYESAE-SSLI 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +++D++ +LI L + DDV VY +
Sbjct: 204 PSMNVQLDEDGARKVFKLIDVLEDCDDVQNVYAN 237
>gi|395242628|ref|ZP_10419624.1| UPF0082 protein HMPREF0492_1075 [Lactobacillus pasteurii CRBIP
24.76]
gi|394479876|emb|CCI85864.1| UPF0082 protein HMPREF0492_1075 [Lactobacillus pasteurii CRBIP
24.76]
Length = 242
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PKD +ER IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPALRLVIDKARSNNMPKDNIERAIKKAEGNSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
+ VE LTD R+ +AVR GG M GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VFVEALTDNKNRTASAVRVAFTRNGGTMGATGSVAYMFDRKGYIVIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ ++ Y++ + + + L + G + +
Sbjct: 156 DVMDAGGDDL------------QTSDEAYEIYTDPKQFAQVRDALIKTGYKLAAAELT-M 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V ++ E + L+ L + DDV VYT
Sbjct: 203 IPQNTTPVPEDKKEQFQHLVDALEDDDDVQNVYT 236
>gi|333375746|ref|ZP_08467547.1| YebC like protein [Kingella kingae ATCC 23330]
gi|332969719|gb|EGK08733.1| YebC like protein [Kingella kingae ATCC 23330]
Length = 241
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 116/216 (53%), Gaps = 15/216 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P +N L ++KA + ++PKD V+R I + + + +IE YE YG GG
Sbjct: 36 AKQGGGDPNANPRLRLAMDKAWDNNMPKDNVQRAIDKGTGNLEGVDYIELRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD TR+VA VR GG + G V F F + +T+AD+D L++
Sbjct: 96 AVMVDCMTDNKTRTVADVRHAFTKHGGNLGTDGCVAFNFEHQGY--LVYTNADEDALMEA 153
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV+ TD+D +V++ ++ I L +AG E D+ +
Sbjct: 154 ALEAGAEDVL--------TDDDGV---IEVITAPADWAQIKITLEQAGFKAE-DSDVTMR 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T E+ + E ++LI L +LDDV VYT +
Sbjct: 202 AQNTTELSGDDAEKMQKLIDALEDLDDVQNVYTSAV 237
>gi|331091071|ref|ZP_08339913.1| hypothetical protein HMPREF9477_00556 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405293|gb|EGG84829.1| hypothetical protein HMPREF9477_00556 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 242
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 110/192 (57%), Gaps = 16/192 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK ++P D +ER IK+A+ E V YE YG GV
Sbjct: 36 VKEGGPDPANNSRLRDVIAKAKSNNMPNDTIERGIKKAAGDANSVNYESVTYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFT-DADKDQLL 136
+I+V+ LTD R+ + VR G + G V + F ++ +++ K + D D+L+
Sbjct: 96 AIIVDALTDNKNRTASNVRNAFTKGSGSVGTQGCVSYMFDKKGQIIVAKEEYETDADELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
IALDAGAED E E+D+ Y++++ ++++D+ L EAG+P + +
Sbjct: 156 MIALDAGAEDFAE----EEDS--------YEILTAPEDFSDVRLALEEAGVPMASAEVT- 202
Query: 197 LLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 203 MIPQTWVELTDE 214
>gi|407006693|gb|EKE22535.1| hypothetical protein ACD_6C00791G0006 [uncultured bacterium]
Length = 249
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 129/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + K GGP+ SN L AV+EKA +++ +D++ R I+R A
Sbjct: 16 KQDASRGKVFTKYIRELTTAAKLGGPDTASNPRLRAVVEKALSVNMTRDVINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV F F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTNGSVAFLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +DQ++++AL+AGAED+ V EDD V++T + + +
Sbjct: 136 KRG--EITFEDVSLEDQIMEVALEAGAEDI---EVTEDD---------ILVITTPEAFGE 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDVQNVYTN 236
>gi|50954745|ref|YP_062033.1| hypothetical protein Lxx10750 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|60390893|sp|Q6AFB7.1|Y1075_LEIXX RecName: Full=Probable transcriptional regulatory protein Lxx10750
gi|50951227|gb|AAT88928.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 252
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 23/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I KS+ + +K GG + + N L ++KAK+ VP D ++R I
Sbjct: 11 KHKKAVIDARRAKSFAKLIKNIEVAAKIGGADLSGNPTLVDAVQKAKKTSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E+ + +YE YG GGV++++E LT+ R+ A VR + GG MADPGS
Sbjct: 71 KRGAGLTGESIDYTTIMYEGYGPGGVALLIECLTENKNRAAAEVRTAMTRNGGTMADPGS 130
Query: 113 VMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 171
V + F R V+ + D D+D +L L+AGAE+V D E ++V++
Sbjct: 131 VAYNFHRKGVIVVPHADGVDEDAVLVAVLEAGAEEVT-----------DLGES-FEVLTE 178
Query: 172 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ + T L+ AGI +++ + +E + T++ D EA LI L + DDV VYT
Sbjct: 179 ATDLVAARTALQAAGIDYDSAD-AEFVATVTVQTDAEAARKVFRLIDALEDSDDVQNVYT 237
>gi|408411472|ref|ZP_11182630.1| UPF0082 protein HMPREF0526_11261 [Lactobacillus sp. 66c]
gi|409350671|ref|ZP_11233719.1| UPF0082 protein HMPREF0526_11261 [Lactobacillus equicursoris CIP
110162]
gi|407874387|emb|CCK84436.1| UPF0082 protein HMPREF0526_11261 [Lactobacillus sp. 66c]
gi|407877291|emb|CCK85777.1| UPF0082 protein HMPREF0526_11261 [Lactobacillus equicursoris CIP
110162]
Length = 244
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 114/216 (52%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PKD ++R IK+A E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPSLRLVMDKARAANMPKDNIQRAIKKAEGNSDEHYDEVTYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
++VE LTD R+ ++VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VLVEALTDNKNRTASSVRVAFTRNGGSLGATGSVSYMFDRKGYIVIDRSTTDADEDQMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
++AG +D+ DD Y++ + + ++T + L +AG SEL
Sbjct: 156 DVMEAGGDDL----QTSDDA--------YEIYTDAKSFTSVRDALEKAGYKLAV---SEL 200
Query: 198 --LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E ++L+ L + DDV VYT
Sbjct: 201 TMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNVYT 236
>gi|229829046|ref|ZP_04455115.1| hypothetical protein GCWU000342_01131 [Shuttleworthia satelles DSM
14600]
gi|229792209|gb|EEP28323.1| hypothetical protein GCWU000342_01131 [Shuttleworthia satelles DSM
14600]
Length = 242
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 115/217 (52%), Gaps = 17/217 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK +VP D +ER IK+A+ +I+ YE YG G
Sbjct: 36 VKEGGPDPGNNSKLRDVIAKAKANNVPNDTIERGIKKAAGDADSVNYIQATYEGYGPSGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR G + PG V MF R +V+ + TD D ++
Sbjct: 96 AIIVQCLTDNKNRTAADVRNAFSKGQGSVGTPGCVSYMFDERGQIIVDKEATDMSADDIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ALDAGA+DV E EDD+ + + S+ +++ + L + G+P D
Sbjct: 156 MMALDAGADDVEE----EDDS--------FVITSSPADFSAVREALEKEGLPM-ADASVT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLL-ELDDVDAVYTD 232
++P T +++ E N I LL E DDV VY +
Sbjct: 203 MVPQTYVQLTSEEDIRNINRILDLLDESDDVQEVYHN 239
>gi|317124985|ref|YP_004099097.1| hypothetical protein Intca_1858 [Intrasporangium calvum DSM 43043]
gi|315589073|gb|ADU48370.1| protein of unknown function DUF28 [Intrasporangium calvum DSM
43043]
Length = 256
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 19/219 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
++GG +P N L ++KAK+ VP D ++R +KR S E G + +YE Y G
Sbjct: 36 ARQGGGDPAGNPTLYDAIQKAKKTSVPNDNIDRALKRGSGAEAGGSDYQTIMYEGYAPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDA---DKD 133
V++++E LTD R+ A VR + GG++ADPGSV + F R+ V+ +K T + ++
Sbjct: 96 VALLIECLTDNRNRAAAEVRTALTRNGGQLADPGSVAYVFSRKGVVIVLKATTSGELSEE 155
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
Q+L++ LDAGAE+V D E +++VS + ++ + T L++AGI +++
Sbjct: 156 QILEVVLDAGAEEV-----------NDNGET-WEIVSEASDFVAVRTALQQAGIDYDSAE 203
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
S +P + +D + + I L + DDV VY +
Sbjct: 204 AS-FVPNLQVPLDLDGAKKMIRCIDALEDSDDVQNVYAN 241
>gi|325287481|ref|YP_004263271.1| hypothetical protein Celly_2583 [Cellulophaga lytica DSM 7489]
gi|324322935|gb|ADY30400.1| UPF0082 protein yeeN [Cellulophaga lytica DSM 7489]
Length = 237
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 122/234 (52%), Gaps = 18/234 (7%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN L AV++ AK +++PKD VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNARLRAVIQNAKSVNMPKDNVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K F E ++E Y G++I+VE TD TR+VA VR C G + GSV F F
Sbjct: 73 DKSLGDFKEVLFEGYAPHGIAILVETATDNNTRTVANVRSYFNKCNGSLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V V++D + + +++ +
Sbjct: 133 HTCNFRIPAEGIDPEELELELIDFGAEEVF---VDDDGI---------LIYAPFESFGAL 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDE--AMELNKELIAKLLELDDVDAVY 230
+L GI +G E +P T E+++E E+ K L+ KL E DDV VY
Sbjct: 181 QKELESRGIEI-LSSGFERIPQVTKELENEEHVAEVEK-LLEKLEEDDDVQNVY 232
>gi|443290312|ref|ZP_21029406.1| conserved hypothetical protein [Micromonospora lupini str. Lupac
08]
gi|385886639|emb|CCH17480.1| conserved hypothetical protein [Micromonospora lupini str. Lupac
08]
Length = 250
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P+ N L ++KAK+ VP D ++R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPSGNPTLFDAIQKAKKSSVPNDNIDRAVKRGSGLEAGGADWQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG +AD GSV + F R VV + +D ++
Sbjct: 97 AMLIECLTDNRNRAATEVRTALTRNGGSLADAGSVSYMFSRKGVVIVPKEGTSEDDVMMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E Y+VVS + + T L++AGI +E+ S L+
Sbjct: 157 VLDAGAEEV-------NDLGE-----AYEVVSEPTDLIPVRTALQDAGIEYESAE-SSLV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + +D+E +LI L + DDV VY +
Sbjct: 204 PSMNVPLDEEGARKIFKLIDVLEDCDDVQNVYAN 237
>gi|257066699|ref|YP_003152955.1| hypothetical protein Apre_1210 [Anaerococcus prevotii DSM 20548]
gi|256798579|gb|ACV29234.1| protein of unknown function DUF28 [Anaerococcus prevotii DSM 20548]
Length = 243
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 18/222 (8%)
Query: 16 YLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVY 70
+ RN+ K+GG NP N L +EKAK ++P D ++R IK+A+ + + F +Y
Sbjct: 28 HARNITVAAKEGGTNPDYNPALKTAIEKAKADNMPNDNIDRAIKKAAGDDASDNFERVIY 87
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E YG GGV+++V+ LTD R+ VR GG + GSVMF F R + +
Sbjct: 88 EGYGPGGVAVIVDCLTDNKNRTAPDVRHAFDKNGGNLGTDGSVMFMFERKGDIIVGKEGK 147
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D D+ + AL+AG EDV E Y++ ++ +++ D KL+E G E
Sbjct: 148 DFDEFMMDALEAGCEDVKEMG------------EYFEAITDVNSFNDANDKLKELGYKIE 195
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + S L I+V+++ ++ +LI L + DDV VY++
Sbjct: 196 SADIS-YLANNMIKVEEDHVDKLNKLIDTLEDNDDVQEVYSN 236
>gi|89891440|ref|ZP_01202945.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
gi|89516214|gb|EAS18876.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
Length = 247
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 6/233 (2%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN L AV++ AK +++PK VER IK+A+
Sbjct: 13 MKRWSAMSKAFTRIGKDIVIAVKEGGPDPESNAKLRAVIQNAKAVNMPKANVERAIKKAT 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K + ++E Y G++++VE TD R+VA VR C G ++ GSV F F
Sbjct: 73 DKDTANYETVLFEGYAPHGIAVLVETSTDNNNRTVANVRSYFTKCDGNLSTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D D ++L +D GAE++ ++E D ++D + + + NY +
Sbjct: 133 HKCHFRIPAGDVDLEELELELIDFGAEELF---LDEKDEEDDNSVDGIMIYAEFQNYGAL 189
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ E G +G E +P EV E E ++L+ KL E DDV+ VYT
Sbjct: 190 QKGIEELGHEI-LSSGFEYIPTMQKEVTAEQREDVEKLLEKLDEDDDVNNVYT 241
>gi|366053733|ref|ZP_09451455.1| hypothetical protein LsueK3_09471 [Lactobacillus suebicus KCTC
3549]
Length = 245
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P +N L V+EKA+ ++PKD V+R I +A+ G F E YE YG GG++
Sbjct: 36 AKAGDPDPANNPQLRLVMEKARSANMPKDNVQRAIDKATGAGGAKFDEITYEGYGPGGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKF-TDADKDQLLD 137
++V LTD R+ AAVR GG + GSV + F RR +V ++ D D+D +L
Sbjct: 96 VMVSALTDNKNRTAAAVRSAFTHSGGSLGATGSVSYMFNRRGYIVVLREDLDTDEDTMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGAED+ ED A +++ + + + L++ G +T + +
Sbjct: 156 DALDAGAEDM---------NTEDGA---FEIFTDPSDLASVRDALQDKGYELDTAELT-M 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+P T +V ++ + LI +L DDV VY
Sbjct: 203 IPENTTKVPEDKASQYQHLIDELESNDDVSDVY 235
>gi|309804509|ref|ZP_07698575.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 09V1-c]
gi|308166162|gb|EFO68379.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
iners LactinV 09V1-c]
Length = 210
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PK +ER IK+A E + E YE Y GGV+
Sbjct: 3 AKSGGPDPSGNPSLRLVMDKARAANMPKSNIERAIKKAEGNSDEHYDEITYEGYAPGGVA 62
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
++VE LTD R+ +AVR GG M GSV + F R V++ TDAD+DQ+L
Sbjct: 63 VLVEALTDNKNRTASAVRVAFTRNGGTMGATGSVAYMFDRKGYIVIDRSTTDADEDQVLM 122
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ ++ +++ + +T + L +AG D +
Sbjct: 123 DVMDAGGDDL------------QASDDAFEIYTDPKAFTGVRDALEKAGYKL-ADAELTM 169
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V E E + LI L + DDV VYT
Sbjct: 170 VPQNTTAVPAEKKEQFERLIDALEDDDDVSNVYT 203
>gi|422730128|ref|ZP_16786522.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0012]
gi|315149401|gb|EFT93417.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0012]
Length = 242
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GGP+PT N L ++KAK ++P D + R IK+AS G+ E + E YE YG GGV
Sbjct: 36 AKAGGPDPTMNPALRLAVDKAKSANMPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLL 136
+++V LTD R+ VR GG + + GSV + F R + IK D ++D +L
Sbjct: 96 AVLVHALTDNRNRTATNVRVAFTRNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ L+AG ED+ P +++ + +++T + L +AG +
Sbjct: 156 EVVLEAGGEDLETSP------------EVFEIYTAPEDFTAVRDALEQAGYSLAQAELT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T + ++DE + L+ KL + DDV V+T
Sbjct: 203 MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
>gi|307718819|ref|YP_003874351.1| hypothetical protein STHERM_c11330 [Spirochaeta thermophila DSM
6192]
gi|306532544|gb|ADN02078.1| hypothetical protein STHERM_c11330 [Spirochaeta thermophila DSM
6192]
Length = 246
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 118/214 (55%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
+ GG +P +N L + KAK ++PK+ +ER IK+ + + + A + E VYE YG GGV
Sbjct: 36 ARTGGGDPEANPRLRTAILKAKAANMPKENIERAIKKGTGELEGADYTEIVYEAYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E LTD R+ + VR ++ GG + + G V + F++ ++ T +D++++
Sbjct: 96 AIIIEALTDNKNRTASEVRHILSKHGGSLGETGCVSYLFKKRGLITFDATKYTEDEIIEA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV +D + E V++ ++ ++ L E G +ET S L+
Sbjct: 156 ALEAGAEDV--------SSDGEVIE----VLTDPSSFEEVQQGLTEKGFEYETAEIS-LI 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P I VD E E +LI L + DDV +V T+
Sbjct: 203 PDARITVDKETAEKVLKLIEALEDNDDVQSVSTN 236
>gi|407804370|ref|ZP_11151194.1| hypothetical protein S7S_03430 [Alcanivorax sp. W11-5]
gi|407021663|gb|EKE33427.1| hypothetical protein S7S_03430 [Alcanivorax sp. W11-5]
Length = 246
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 119/214 (55%), Gaps = 19/214 (8%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIV 81
GGP P N L AV++KA ++ +D ++R IKR A ++++ YE YG GGV+++
Sbjct: 39 GGPEPNDNPRLRAVVDKALTANMTRDTIDRAIKRGIGSDDGASMDEISYEGYGPGGVAVL 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLDIAL 140
VE +TD + R+V+ VR GG + GSV + F +R ++ T D+D L++ AL
Sbjct: 99 VETMTDNVNRTVSDVRHAFTKHGGNLGTSGSVAYLFTKRGEILFEPGT--DEDALMEAAL 156
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN-YTDITTKLREAGIPFETDNGS-ELL 198
+AGAEDV V++D + V++T+D + D+ L+ AG FE N +
Sbjct: 157 EAGAEDV---QVDDDGS--------MTVITTADRAFGDVVDALKAAG--FEPANAEVTMH 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T EVD + E ++I L +LDDV VYT+
Sbjct: 204 PATDAEVDGDTAEKVMKMIDHLEDLDDVQNVYTN 237
>gi|323359950|ref|YP_004226346.1| hypothetical protein MTES_3502 [Microbacterium testaceum StLB037]
gi|323276321|dbj|BAJ76466.1| uncharacterized conserved protein [Microbacterium testaceum
StLB037]
Length = 252
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 21/230 (9%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA 64
+ W + ++N+ K GG + N L + KAK+ VPKD ++R IKR + G EA
Sbjct: 23 KSWAK--LIKNIEVAAKLGGADLQGNPTLFDAVLKAKKTSVPKDNIDRAIKRGAGIGGEA 80
Query: 65 --FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
++ +YE YG GV+ ++E LTD R+ A VR + GG +ADPGSV + F R V
Sbjct: 81 VEYLSIMYEGYGPNGVAFLIECLTDNKNRAAAEVRTALSRNGGTLADPGSVAYNFSRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
+ + +D ++ L+AGAE+ IEP + + +++ + + + + L
Sbjct: 141 IVVPREGTTEDDVMLATLEAGAEE-IEPHGDG-----------FGIITEASDLVTVRSAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ + E +P IEVD + LI L + DDV VYT+
Sbjct: 189 QEAGIEYDSAD-VEFVPSLKIEVDADTARKVFRLIDALEDSDDVQNVYTN 237
>gi|406962504|gb|EKD88838.1| hypothetical protein ACD_34C00308G0003 [uncultured bacterium]
Length = 251
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 120/216 (55%), Gaps = 15/216 (6%)
Query: 19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI--EKVYEVYGYG 76
+ ++GG +P SN L ++KA+ +PKD ++R +KRA+ +G+E I E YE Y
Sbjct: 35 SAREGGADPDSNFRLRLAIDKARAQSMPKDNIDRALKRAAGEGKEGEIYEEVSYEGYAPN 94
Query: 77 GVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLL 136
G+++++E +T+ R+VA +R ++ GG M + GSV ++F+RA + + D +++
Sbjct: 95 GIAVIIECVTENRNRTVAEIRHLLTRSGGNMGELGSVGWQFKRAATYSFDSSKYDFEKVF 154
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++A++ GA+D VNEDD + V++ + + ++ + R A + TD G
Sbjct: 155 ELAVEGGADD-----VNEDDGE-------INVIAPVEAFKTLSDRFRAANM-MPTDAGLS 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P +E+ E I L ELDDV VY++
Sbjct: 202 MIPTNEMELSVEDTLQVVRTIENLEELDDVQNVYSN 237
>gi|392966949|ref|ZP_10332367.1| protein of unknown function DUF28 [Fibrisoma limi BUZ 3]
gi|387843746|emb|CCH54415.1| protein of unknown function DUF28 [Fibrisoma limi BUZ 3]
Length = 237
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK ++ WG+ K++ R VK GGP+P +N L AV++ AK ++PKD VER
Sbjct: 8 RKARKMKRWGQMAKTFTRIGKDIVIAVKNGGPDPDTNGRLRAVIQNAKAANMPKDNVERA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK+AS K QE + E VYE Y G+++V+E TD R+VA +R + GG + G +
Sbjct: 68 IKKASSKEQEDYKEIVYEAYAPHGIALVIETATDNHNRTVANIRSYLNKLGGSLGTQGML 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F R V I D+++L +D G E+V + DE+ + Y +
Sbjct: 128 DFMFDRKSVFRISAEGVDQEELEFELIDVGGEEV--------ELDEETNQ--YVIYGEFT 177
Query: 174 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ I L E G + E +P E+ DE + ++LI ++ E DDV VY +
Sbjct: 178 AFGAIQKFLEEKGYEIKQAE-FERIPNDYKELTDEEVADVEKLIERIEEDDDVQNVYHN 235
>gi|297571391|ref|YP_003697165.1| hypothetical protein Arch_0820 [Arcanobacterium haemolyticum DSM
20595]
gi|296931738|gb|ADH92546.1| protein of unknown function DUF28 [Arcanobacterium haemolyticum DSM
20595]
Length = 254
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 29/222 (13%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S +G E + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKRGSGEGAEQVNYENIMYEGYGANGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFT-DADKDQLLD 137
+I++E LTD R+ + VR + GG +ADPGSV + F R +V + T D +D +L
Sbjct: 97 AILIECLTDNRNRAASDVRVALTRNGGTLADPGSVSYMFSRKGIVEVPNTGDFSEDDILM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V NE D ++V+S ++ ++ L+ GI + N +E+
Sbjct: 157 AVLDAGAEEV----TNEGDV--------FEVLSEPNDVVEVRKALQAEGIDY---NSAEV 201
Query: 198 -------LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+PIT +E ++ M +LI L ++DD+ AVY++
Sbjct: 202 QFVPSMKVPITDVETANKLM----KLIDALDDVDDIQAVYSN 239
>gi|386346903|ref|YP_006045152.1| hypothetical protein [Spirochaeta thermophila DSM 6578]
gi|339411870|gb|AEJ61435.1| UPF0082 protein yeeN [Spirochaeta thermophila DSM 6578]
Length = 246
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
+ GG +P +N L + KAK ++PK+ +ER IK+ + + + A + E VYE YG GGV
Sbjct: 36 ARTGGGDPEANPRLRTAILKAKAANMPKENIERAIKKGTGELEGADYTEIVYEAYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E LTD R+ + VR ++ GG + + G V + F++ ++ T +D++++
Sbjct: 96 AIIIEALTDNKNRTASEVRHILSKHGGSLGETGCVSYLFKKRGLITFDATKYTEDEIIEA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV +D + E V++ ++ ++ L E G +ET S L+
Sbjct: 156 ALEAGAEDV--------SSDGEVIE----VLTDPSSFEEVQQGLTEKGFEYETAEIS-LI 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P I VD E E LI L + DDV +V T+
Sbjct: 203 PDARITVDKETAEKVLRLIEALEDNDDVQSVSTN 236
>gi|433455632|ref|ZP_20413709.1| hypothetical protein D477_01673 [Arthrobacter crystallopoietes
BAB-32]
gi|432197388|gb|ELK53773.1| hypothetical protein D477_01673 [Arthrobacter crystallopoietes
BAB-32]
Length = 252
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I KS+ + +K GG + + N L ++KAK+ VP D ++R I
Sbjct: 11 KHKKAVIDARRAKSFAKLIKNIEVAARAGGADVSGNPALELAVQKAKKTSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E+ + E +YE G G +++VE LTD R+ + VR + GG +ADPGS
Sbjct: 71 KRGAGLTGESIDYQEIIYEARGPQGSALLVECLTDNKNRAASEVRVAITRNGGTVADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R VVN+ D +D +L LDAGAE+V E N +++
Sbjct: 131 VSYMFSRKGVVNLPKKDLTEDDVLMAVLDAGAEEVKESGEN------------FEIHCEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + L EAGI ++TD E +P +E+D +A +L L +LDDV VY++
Sbjct: 179 TDLRAVVGALEEAGIDYDTDE-VEFVPSMDVELDLDAARKFMKLADALEDLDDVQNVYSN 237
>gi|266620457|ref|ZP_06113392.1| glucose-1-phosphate adenylyltransferase [Clostridium hathewayi DSM
13479]
gi|288867943|gb|EFD00242.1| glucose-1-phosphate adenylyltransferase [Clostridium hathewayi DSM
13479]
Length = 242
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 109/193 (56%), Gaps = 18/193 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK ++P D ++R IK+A+ E + YE YG GV
Sbjct: 36 VKEGGPDPANNSKLRDVIAKAKANNMPNDTIDRGIKKAAGDANAVNYETITYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + PG V + F + +++ + + D D+L+
Sbjct: 96 AIIVDTLTDNKNRTAANVRSAFTKGGGNVGTPGCVSYMFDKKGQIIIDKEECEMDPDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETDNGS 195
+ALDAGAED E E+D+ Y+V++ ++++ + L AGIP E D
Sbjct: 156 MMALDAGAEDFSE----EEDS--------YEVITAPEDFSAVREALEAAGIPMVEAD--V 201
Query: 196 ELLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 202 TMIPQTWVELTDE 214
>gi|452946147|gb|EME51647.1| hypothetical protein H074_35719 [Amycolatopsis decaplanina DSM
44594]
Length = 249
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 115/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP+D +ER KR + E G + YE YG G
Sbjct: 36 ARTGGGDPDGNPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGADWQTITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ VR + G +ADPGSV + F R VV + DA +D +L
Sbjct: 96 VAVLIECLTDNKNRAAMEVRTALTRNNGSLADPGSVAYMFNRKGVVIMPKGDAGEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D DE+ +++V+ + + + L+EAG +E+ + +
Sbjct: 156 AVLDAGAEEV-------NDLDEN-----FEIVAEATDLVPVRKALQEAGFEYESADLT-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP ++ +D E + +LI L + DDV VY +
Sbjct: 203 LPSVSVPLDVEGAKKVFKLIDALEDCDDVQNVYAN 237
>gi|405980967|ref|ZP_11039296.1| YebC/PmpR family DNA-binding regulatory protein [Actinomyces neuii
BVS029A5]
gi|404392986|gb|EJZ88043.1| YebC/PmpR family DNA-binding regulatory protein [Actinomyces neuii
BVS029A5]
Length = 254
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPNGNPTLYDAIQKAKKNSVPADNIDRAVKRGSGAEAGGADWETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+ +VE LTD R+ + VR GG +ADPGSV + F R +V + D D+D +L
Sbjct: 97 AFLVECLTDNKNRAASDVRVAFTRNGGNLADPGSVSYLFSRRGIVEVPKADGVDEDTVLM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V D E + V S D+ T L+EAGI + + +E
Sbjct: 157 AVLDAGAEEVT-----------DMGE-VFVVDSDPSQVVDVRTALQEAGIDYNSAE-TEW 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T I+VD + + LI L + DDV V+T
Sbjct: 204 VASTQIDVDLDGLRKTTRLIDALEDSDDVQNVFT 237
>gi|307272475|ref|ZP_07553728.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0855]
gi|306510760|gb|EFM79777.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0855]
Length = 250
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 17/232 (7%)
Query: 3 RKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ 62
++ R R+ Y+ K GGP+P N L ++KAK ++P D + R IK+AS G+
Sbjct: 28 KRGKIFRKVSREIYMA-AKAGGPDPAMNPALRLAVDKAKSANMPNDNIARAIKKASSAGE 86
Query: 63 -EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR 121
E + E YE YG GGV+++V LTD R+ VR GG + + GSV + F R
Sbjct: 87 GEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRNGGSLGETGSVNYMFDRKG 146
Query: 122 VVNIKFTDA--DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
+ IK D ++D +L++ L+AG ED+ P +++ + +++T +
Sbjct: 147 YIVIKREDHAIEEDDMLEVVLEAGGEDIETSP------------EVFEIYTAPEDFTAVR 194
Query: 180 TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
L +AG + ++P T + ++DE + L+ KL + DDV V+T
Sbjct: 195 DALEQAGYSLAQAELT-MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 245
>gi|90426278|ref|YP_534648.1| hypothetical protein RPC_4807 [Rhodopseudomonas palustris BisB18]
gi|119372137|sp|Q20X07.1|Y4807_RHOPB RecName: Full=Probable transcriptional regulatory protein RPC_4807
gi|90108292|gb|ABD90329.1| protein of unknown function DUF28 [Rhodopseudomonas palustris
BisB18]
Length = 248
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 112/220 (50%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L + + A++ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNARLRSAIIAARQENMPKDNIERAIKKAIGSDGENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVAFMFDRTGIIEFDAKVASADDMLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
++AGA+DV+ ++ ++V ++ D++ ++ L R+A + ++
Sbjct: 156 IEAGADDVLS------------SDSGHEVYASQDSFREVAKALEQKFGEARKAALTWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +LI L E DDV VY +
Sbjct: 202 ------PQNTVPVDDETGEKLLKLIDLLQEHDDVQNVYAN 235
>gi|429745092|ref|ZP_19278535.1| DNA-binding regulatory protein, YebC/PmpR family [Neisseria sp.
oral taxon 020 str. F0370]
gi|429161299|gb|EKY03716.1| DNA-binding regulatory protein, YebC/PmpR family [Neisseria sp.
oral taxon 020 str. F0370]
Length = 241
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 15/213 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIV 81
GG +P SN L ++KA + ++PKD V+R I + + + +IE YE YG GG +++
Sbjct: 39 GGGDPASNPRLRLAMDKAWDANMPKDNVQRAIDKGTGNLEGVDYIELRYEGYGIGGAALM 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
V+ +TD TR+VA VR GG + G V F F + +TDAD+D L++ AL+
Sbjct: 99 VDCMTDNKTRTVADVRHAFNKNGGNLGTDGCVAFNFVHQGY--LVYTDADEDALMEAALE 156
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDV+ +ED E V++ ++ I KL EAG + + +
Sbjct: 157 AGAEDVV---AHEDGIIE--------VITAPADWAGIKAKLEEAGFTSQDGDVTMRAQNE 205
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T+ ++A ++ K LI L LDDV VYT +
Sbjct: 206 TVLTGEDAAKMQK-LIDALENLDDVQNVYTSAV 237
>gi|384215890|ref|YP_005607056.1| hypothetical protein BJ6T_21890 [Bradyrhizobium japonicum USDA 6]
gi|354954789|dbj|BAL07468.1| hypothetical protein BJ6T_21890 [Bradyrhizobium japonicum USDA 6]
Length = 248
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A++ ++PKD +ER +K+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPNMNPRLRAAIIAARQENMPKDNIERAVKKALGNEGENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRTGIIEYDRSVASDDAVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV+ E +++ ++++ Y D+ L F + L+
Sbjct: 156 IEAGADDVVS------------GEGGHEIYASTEGYRDVAKALE---AKFGEPRKAALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 201 KPQNTVAVDDETGEKLLKLMDLLNEHDDVQQVYAN 235
>gi|313894586|ref|ZP_07828149.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 158 str. F0412]
gi|313440776|gb|EFR59205.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 158 str. F0412]
Length = 244
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 121/220 (55%), Gaps = 24/220 (10%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-----QEAFIEKVYEVYGY 75
+ GG +PT N L L+KA+E ++PKD NI+RA +KG A+ E VYE YG
Sbjct: 37 RMGGADPTGNMRLKLALQKARENNIPKD----NIQRAIDKGVGATDMNAYEEIVYEGYGP 92
Query: 76 GGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQL 135
GV++ VEV+TD R+ A VR GG + + G V + F+ V I D+D+L
Sbjct: 93 AGVAVTVEVMTDNRNRAAADVRHAFSKQGGNLGESGCVGWMFKSKGVFVIDKEGHDEDEL 152
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
+AL+AGAED+ +EDD +++ +T ++Y + L +AGI +
Sbjct: 153 TMLALEAGAEDL----KSEDDV--------FEIYTTPEDYDAVEAALADAGIETVVAKIT 200
Query: 196 ELLPITTIEVD-DEAMELNKELIAKLLELDDVDAVYTDQI 234
++P TTIE+ D+A+++ K ++ L LDDV VY + I
Sbjct: 201 -MIPDTTIELSGDDAVKMQK-MLDVLDNLDDVQNVYHNGI 238
>gi|291563835|emb|CBL42651.1| conserved hypothetical protein TIGR01033 [butyrate-producing
bacterium SS3/4]
Length = 242
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 123/218 (56%), Gaps = 19/218 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D ++R IK+A+ E + YE YG GV
Sbjct: 36 VKEGGADPANNSKLRDVIAKAKANNMPNDTIDRGIKKAAGDLNSVNYENLTYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + GSV F F R V++ + D D D+L+
Sbjct: 96 AIIVDTLTDNKNRTAANVRSAFTKGGGNVGAQGSVSFMFDRKGQIVIDKEECDMDADELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETDNGS 195
ALDAGAED E E+D+ Y+V++ DN++ + L +AGIP E D
Sbjct: 156 MAALDAGAEDFSE----EEDS--------YEVITDPDNFSAVREALEKAGIPMVEAD--I 201
Query: 196 ELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
++P +E+ D+EA++ + ++ L E DDV AVY +
Sbjct: 202 TMIPQNWVELTDEEAIKKMQRILDLLDEDDDVQAVYHN 239
>gi|384085949|ref|ZP_09997124.1| hypothetical protein AthiA1_10639 [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 250
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 119/215 (55%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GG +P SN+ L L+KA ++ KD +ER +KR + + + E+V YE YG GV
Sbjct: 36 ARAGGGDPGSNSRLRLALDKAYGANMTKDTIERAVKRGTGELEGVDYEEVTYEGYGPAGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E +TD R+VA +R + GG M GSV ++F++ ++ DAD+D++L+
Sbjct: 96 AILIETMTDNKVRTVAEIRHIFSKRGGNMGTAGSVAYQFKKLGLIAFP-GDADEDKILEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSEL 197
AL+AGAEDV VNE ER + +D ++ + L AG+ P E++ +
Sbjct: 155 ALEAGAEDV----VNE-------GERIAVYTAATDLHS-VVQALEAAGLQPEESE--LTM 200
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TIEV E E LI L E DDV VY +
Sbjct: 201 IPENTIEVSGEEAEKLLRLIDFLEENDDVQNVYAN 235
>gi|92118985|ref|YP_578714.1| hypothetical protein Nham_3525 [Nitrobacter hamburgensis X14]
gi|119391973|sp|Q1QHP3.1|Y3525_NITHX RecName: Full=Probable transcriptional regulatory protein Nham_3525
gi|91801879|gb|ABE64254.1| protein of unknown function DUF28 [Nitrobacter hamburgensis X14]
Length = 248
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+AS E++ E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNARLRAAMIAARAENMPKDNIERAIKKASGHDAESYDELRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I++EVLTD R+ + +R GG + + GSV F F R VV A D +L+ A
Sbjct: 96 IIMEVLTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRLGVVEYDADKASADDMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV+ E +++ ++ + + D+ L F L+
Sbjct: 156 VEAGADDVVS------------GEGGHEIYASQETFRDVARALEG---KFGEARKVALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDD E +LI L E DDV VY +
Sbjct: 201 KPQNTVAVDDNTGEKLLKLIDLLNEHDDVQNVYAN 235
>gi|421856330|ref|ZP_16288697.1| putative transcriptional regulator [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|403188269|dbj|GAB74898.1| putative transcriptional regulator [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 249
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 130/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + K GGP+ SN L AV+EKA +++ +D + R I+R A
Sbjct: 16 KQDASRGKVFTKYIREIVTAAKLGGPDAASNPRLRAVVEKALSVNMTRDTINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEITYEGYGTGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTSGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D ++++L++AL+AGAED+ ++ED+ V++T +N+ D
Sbjct: 136 KRG--EISFDDLSLEEKILEVALEAGAEDI---EISEDE---------ILVITTPENFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALSAAGL--KSDNAEVVMSPSTKAEITDIDQAKQIMK-MIDMLEDLDDVQNVYTN 236
>gi|342213643|ref|ZP_08706366.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 780 str. F0422]
gi|341597731|gb|EGS40270.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 780 str. F0422]
Length = 243
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 18/218 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK GG +PT N L L+KA+E ++PKD ++R I + + G E++ YE YG GG
Sbjct: 36 VKAGGTDPTGNMRLKLALQKARENNIPKDNIQRAIDKGAGAGDANNYEEITYEGYGPGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+VEV+TD R+ A VR GG + + GSV + F+R V I D++ L +
Sbjct: 96 AILVEVMTDNRNRAAADVRHAFSKRGGNLGESGSVNWMFKRKGVFVIPQEGNDEETLTLL 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
ALDAGAED+ EDD + + + D+Y + L EA I TD +
Sbjct: 156 ALDAGAEDIKV----EDDV--------FVIYTLPDDYDAVEAALAEASIA--TDMAQITM 201
Query: 198 LPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTDQI 234
+P T +E+ D+A+ + + ++ L +LDDV VY + I
Sbjct: 202 VPDTNMELTGDDAVNMQR-VLDMLEDLDDVQDVYHNAI 238
>gi|110823373|gb|ABG98657.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 305
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 76 RGKAFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGG 135
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG MADPGSV + F R V
Sbjct: 136 ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGV 195
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ D +D +L LDAGAE+V + DT +++VS + + + L
Sbjct: 196 VTLEKGDQSEDDVLMAVLDAGAEEVTDL----GDT--------FEIVSEPTDLVAVRSAL 243
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ ++ + VD + +L+ L E DDV VYT+
Sbjct: 244 QEAGIDYDSAE-ADFRASVEVPVDADGARKVFKLVDALEESDDVQNVYTN 292
>gi|441500313|ref|ZP_20982477.1| hypothetical protein C900_05160 [Fulvivirga imtechensis AK7]
gi|441435926|gb|ELR69306.1| hypothetical protein C900_05160 [Fulvivirga imtechensis AK7]
Length = 247
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
++GGP+P N L ++ AK +VPKD +ER I + S +IE YE YG GV+
Sbjct: 36 AREGGPDPEGNPRLRLAIQNAKGQNVPKDNIERAINKGSGSDAVDYIETTYEGYGPHGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLDI 138
+ VE TD + R+VA+VR + GG + GSV + F R+ + ++ + D+D L
Sbjct: 96 VFVECATDNLNRTVASVRSLFSKYGGSLGVNGSVDYMFERKGTFLIVQNEETDQDDLTLE 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL- 197
+D GAE+V + E Y +V +++ ++ KL E + ET +EL
Sbjct: 156 LIDGGAEEV------------EFNEGYVEVTCAMEDFGNMQHKLDELSLEAET---AELQ 200
Query: 198 -LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TT+ +DDE + +LI L + DDV VY +
Sbjct: 201 RIPTTTVALDDEQFDKVMKLIEALEDDDDVQKVYHN 236
>gi|339624570|ref|ZP_08660359.1| hypothetical protein FfruK3_03905 [Fructobacillus fructosus KCTC
3544]
Length = 240
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V++KAK ++PKD ++R + +AS G F E YE YG GV+
Sbjct: 36 AKAGGADPEMNASLRLVVDKAKAANMPKDNIQRALDKASGAGGAKFEEVTYEGYGTAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLL 136
++VE TD I R+V++VR K GG + GSV F+F R I D D+D +L
Sbjct: 96 VLVEASTDNINRTVSSVRNSFKHFGGSLGTSGSVAFQFDRKGYFAIDREANPDLDEDTIL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ AL+AGAEDV ++ +++ + ++ + L EAG +
Sbjct: 156 EAALEAGAEDV------------QTSDEAFEIYTAPSDFQAVEAALTEAGYDL-AEAEVT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + + DE E +L+ +L + +DV AVYT
Sbjct: 203 MIAQNPMSISDEDREKLDKLVDELEDNEDVLAVYT 237
>gi|320352801|ref|YP_004194140.1| hypothetical protein Despr_0673 [Desulfobulbus propionicus DSM
2032]
gi|320121303|gb|ADW16849.1| protein of unknown function DUF28 [Desulfobulbus propionicus DSM
2032]
Length = 249
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 120/214 (56%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L + + AK ++PK+ ++R IK+ + + G + E +YE YG GGV+
Sbjct: 37 KMGGGDPEGNPRLRSAITVAKSENMPKENIDRAIKKGTGDLGGAVYEEILYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE +TD R+VA +R GG + + G V + F + +++ +++QL+D+A
Sbjct: 97 VLVETMTDNKNRTVADIRHFFAKSGGNLGESGCVAWMFDKKGTISVDKAGVNEEQLMDVA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+AGAEDV+E E+D+ +++++ +++ D+ +L + I F S ++P
Sbjct: 157 LEAGAEDVVE----EEDS--------FQIITAPESFNDVVDQLEKGKIKFAEATLS-MVP 203
Query: 200 ITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
TIEV +E A L+ L + DDV V+ +
Sbjct: 204 KNTIEVTEEKAARSLLRLLDNLEDHDDVQKVHAN 237
>gi|409422850|ref|ZP_11259930.1| hypothetical protein PsHYS_12189 [Pseudomonas sp. HYS]
Length = 248
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 18/236 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + K+GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAAKQGGGDPASNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGTAEADNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L++ A++A A+DV+ N+D + + V ++ +++
Sbjct: 134 FERKGQISFA-AGVDEDALMEAAMEADADDVVS---NDDGS--------FDVFTSFNSFY 181
Query: 177 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L EAG D + P T+ E+D + + +LI L +LDDV VY++
Sbjct: 182 AVRNALEEAGFK-AADAEIVMQPTTSAELDLDGAQKVLKLIDMLEDLDDVQNVYSN 236
>gi|395769327|ref|ZP_10449842.1| hypothetical protein Saci8_06092 [Streptomyces acidiscabies 84-104]
Length = 250
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 116/214 (54%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P+ N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RTGGADPSGNPTLFDAIQKAKKSSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R V+ + + +D +LD
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGNMADPGSVSYLFNRKGVIIVPKGELSEDDVLDA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+ AGI +++ + S +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVLSEATDLVAVRTALQSAGIDYDSAD-SNFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|317484652|ref|ZP_07943555.1| hypothetical protein HMPREF0179_00906 [Bilophila wadsworthia 3_1_6]
gi|316924126|gb|EFV45309.1| hypothetical protein HMPREF0179_00906 [Bilophila wadsworthia 3_1_6]
Length = 248
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 115/216 (53%), Gaps = 22/216 (10%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA---FIEKVYEVYGYGGV 78
K G +P SN+ L A + AK +++PKD +E I++ + GQ+A IE YE YG GGV
Sbjct: 37 KNGGDPASNSRLRAAIAAAKSINLPKDKIEAAIRKGT--GQDAGGDIIEINYEGYGPGGV 94
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE TD R+VA +R ++ GG M + G V +KF R V+ +DQL++
Sbjct: 95 AVIVETATDNRNRTVAEIRHLMSKGGGSMGENGCVSWKFERKGVIQFSKEKYTEDQLMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL- 197
AL+AGA+D+ D+ D +++ + ++ + AG+ + +EL
Sbjct: 155 ALEAGADDL------RDEGD------VWEIQTAMADFNSVREAFEAAGLEMIS---AELN 199
Query: 198 -LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TT+EVD E I L + DDV VY+D
Sbjct: 200 QVPQTTMEVDLETARKLLRFIELLEDNDDVQNVYSD 235
>gi|410666303|ref|YP_006918674.1| hypothetical protein M5M_19080 [Simiduia agarivorans SA1 = DSM
21679]
gi|409028660|gb|AFV00945.1| hypothetical protein M5M_19080 [Simiduia agarivorans SA1 = DSM
21679]
Length = 247
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 118/217 (54%), Gaps = 24/217 (11%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ---EAFIEKVYEVYGYGGV 78
KGGPNP N L A ++KA ++ +D +++ I + S GQ E + E YE YG GV
Sbjct: 37 KGGPNPDDNPRLRAAVDKALGANMKRDTIDKAIAKGS--GQTDGENYEECTYEGYGLAGV 94
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E +TD R+VA VR GG + GSV + F R V I F AD+D L++
Sbjct: 95 AVLIECMTDNRNRTVAEVRNAFSKKGGNLGTDGSVAYLFTRTGV--ISFAGADEDALMEA 152
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS-DNYTDITTKLREAGIPFETDNGS-E 196
A++AGA DVI VN+D + VV T+ +++ + L AG F+ D+
Sbjct: 153 AIEAGAADVI---VNDDGS---------VVVHTAFEDFLSVKDALVAAG--FKPDDAEVT 198
Query: 197 LLPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
+LP T E+DD + E LI L +LDDV VYT+
Sbjct: 199 MLPATHAEIDDKDTAEKVMALIDMLEDLDDVQNVYTN 235
>gi|116490816|ref|YP_810360.1| hypothetical protein OEOE_0768 [Oenococcus oeni PSU-1]
gi|290890261|ref|ZP_06553340.1| hypothetical protein AWRIB429_0730 [Oenococcus oeni AWRIB429]
gi|419759030|ref|ZP_14285342.1| hypothetical protein AWRIB304_1599 [Oenococcus oeni AWRIB304]
gi|419856746|ref|ZP_14379466.1| hypothetical protein AWRIB202_540 [Oenococcus oeni AWRIB202]
gi|419858734|ref|ZP_14381394.1| hypothetical protein AWRIB129_769 [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421185222|ref|ZP_15642633.1| hypothetical protein AWRIB318_1595 [Oenococcus oeni AWRIB318]
gi|421187758|ref|ZP_15645102.1| hypothetical protein AWRIB419_521 [Oenococcus oeni AWRIB419]
gi|421189492|ref|ZP_15646806.1| hypothetical protein AWRIB422_538 [Oenococcus oeni AWRIB422]
gi|421191052|ref|ZP_15648336.1| hypothetical protein AWRIB548_373 [Oenococcus oeni AWRIB548]
gi|421194078|ref|ZP_15651313.1| hypothetical protein AWRIB553_1735 [Oenococcus oeni AWRIB553]
gi|421195534|ref|ZP_15652742.1| hypothetical protein AWRIB568_1501 [Oenococcus oeni AWRIB568]
gi|421197645|ref|ZP_15654820.1| hypothetical protein AWRIB576_1832 [Oenococcus oeni AWRIB576]
gi|122277002|sp|Q04FS7.1|Y768_OENOB RecName: Full=Probable transcriptional regulatory protein OEOE_0768
gi|116091541|gb|ABJ56695.1| hypothetical protein OEOE_0768 [Oenococcus oeni PSU-1]
gi|290480047|gb|EFD88692.1| hypothetical protein AWRIB429_0730 [Oenococcus oeni AWRIB429]
gi|399904485|gb|EJN91941.1| hypothetical protein AWRIB304_1599 [Oenococcus oeni AWRIB304]
gi|399964403|gb|EJN99044.1| hypothetical protein AWRIB318_1595 [Oenococcus oeni AWRIB318]
gi|399967004|gb|EJO01503.1| hypothetical protein AWRIB419_521 [Oenococcus oeni AWRIB419]
gi|399969696|gb|EJO04018.1| hypothetical protein AWRIB553_1735 [Oenococcus oeni AWRIB553]
gi|399972582|gb|EJO06781.1| hypothetical protein AWRIB422_538 [Oenococcus oeni AWRIB422]
gi|399973748|gb|EJO07913.1| hypothetical protein AWRIB548_373 [Oenococcus oeni AWRIB548]
gi|399975254|gb|EJO09322.1| hypothetical protein AWRIB576_1832 [Oenococcus oeni AWRIB576]
gi|399975959|gb|EJO09994.1| hypothetical protein AWRIB568_1501 [Oenococcus oeni AWRIB568]
gi|410497891|gb|EKP89359.1| hypothetical protein AWRIB129_769 [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|410499197|gb|EKP90633.1| hypothetical protein AWRIB202_540 [Oenococcus oeni AWRIB202]
Length = 240
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 115/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P++N L V++KAK ++PKD V+R + +A+ G F E YE Y GG++
Sbjct: 36 AKAGGADPSANASLRLVMDKAKAANMPKDNVQRALDKATGAGDVKFEEATYEGYAPGGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVV--NIKFTDADKDQLL 136
++VE TD I R+V+ VR GG + GSV F+F RR V D +DQ++
Sbjct: 96 VLVETSTDNINRTVSNVRNSFNHHGGSLGTSGSVSFQFDRRGHFVIDRQSHPDITEDQVM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ A++AGAEDV T +D +++ S ++ + L + G ++
Sbjct: 156 EDAIEAGAEDV--------QTSDDA----FEIFSQPADFAAVEGALTDKGYDL-AESEIT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P +EV + E ++LI +L + DDV AVYT
Sbjct: 203 MIPQNPVEVPEADQEKFEKLIDELEDNDDVLAVYT 237
>gi|269795056|ref|YP_003314511.1| hypothetical protein Sked_17500 [Sanguibacter keddieii DSM 10542]
gi|269097241|gb|ACZ21677.1| conserved hypothetical protein TIGR01033 [Sanguibacter keddieii DSM
10542]
Length = 252
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA----FIEKVYEVYGY 75
+ GG + N L ++KAK+ VP D +ER +KR S GQEA + +YE YG
Sbjct: 36 ARTGGGDINGNPTLFDAVQKAKKTSVPNDNIERALKRGS--GQEAGGADYQTIMYEGYGP 93
Query: 76 GGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQL 135
GG++ +VE LTD R+ A VR GG++ADPGSV + F R VV + D+D +
Sbjct: 94 GGIAFLVECLTDNKNRAAAEVRIAFTRNGGQLADPGSVSYLFSRKGVVIVPKDGTDEDSV 153
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
L+ L+AG E+V +D E ++V+S + + + T L+EAGI +++ +
Sbjct: 154 LEAVLEAGGEEV-------NDLGES-----FEVLSEATDLVAVRTALQEAGIEYDSAD-V 200
Query: 196 ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +EVD E L+ L + DDV V+ +
Sbjct: 201 VFHPSMQVEVDAEGARKALRLVDALEDSDDVQNVFAN 237
>gi|118467795|ref|YP_887259.1| hypothetical protein MSMEG_2940 [Mycobacterium smegmatis str. MC2
155]
gi|399987276|ref|YP_006567625.1| hypothetical protein MSMEI_2866 [Mycobacterium smegmatis str. MC2
155]
gi|441208041|ref|ZP_20973802.1| hypothetical protein D806_2988 [Mycobacterium smegmatis MKD8]
gi|166228930|sp|A0QWH1.1|Y2940_MYCS2 RecName: Full=Probable transcriptional regulatory protein
MSMEG_2940/MSMEI_2866
gi|118169082|gb|ABK69978.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
gi|399231837|gb|AFP39330.1| UPF0082 protein [Mycobacterium smegmatis str. MC2 155]
gi|440627776|gb|ELQ89583.1| hypothetical protein D806_2988 [Mycobacterium smegmatis MKD8]
Length = 251
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 110/212 (51%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GG +P N L ++KAK+ VP D +ER KR + E G + YE YG GV++
Sbjct: 39 GGGDPGGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGGADWQNITYEGYGPNGVAV 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+VE LTD R+ VR + GG MADPGSV + F R VV ++ +D +L L
Sbjct: 99 LVECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFSRKGVVTLEKNGLTEDDVLLAVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AGAE+V D D ++++S + + T L+EAGI +++ + S P
Sbjct: 159 EAGAEEV------NDLGDS------FEIISEPSDLVAVRTALQEAGIDYDSADAS-FQPS 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ VD E +L+ L + DDV VYT+
Sbjct: 206 VTVPVDLEGARKVLKLVDALEDSDDVQDVYTN 237
>gi|417770411|ref|ZP_12418319.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Pomona]
gi|418682672|ref|ZP_13243886.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Kennewicki LC82-25]
gi|418706519|ref|ZP_13267366.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Hebdomadis str. R499]
gi|418712581|ref|ZP_13273318.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 08452]
gi|421115021|ref|ZP_15575435.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|400325594|gb|EJO77869.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Kennewicki LC82-25]
gi|409947552|gb|EKN97548.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Pomona]
gi|410013742|gb|EKO71819.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|410763848|gb|EKR34568.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Hebdomadis str. R499]
gi|410790951|gb|EKR84635.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 08452]
gi|455665733|gb|EMF31235.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pomona str. Fox 32256]
Length = 249
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 119/214 (55%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER I++ + E + E +YE +G GG++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRKGTGELEGVTYEECLYECFGPGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQISEDELVDVA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE D Y+V+S DNY + L E G+ E ++ +P
Sbjct: 157 VGGGAEDVI----NEGDV--------YRVISVPDNYETVLHTLNEKGLKSE-ESEIRYIP 203
Query: 200 ITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
+ + E+ D E E +LI +L DDV +V ++
Sbjct: 204 LVSSEIADKEVAEKIMKLIDQLDGHDDVTSVTSN 237
>gi|255658185|ref|ZP_05403594.1| glucose-1-phosphate adenylyltransferase [Mitsuokella multacida DSM
20544]
gi|260849493|gb|EEX69500.1| glucose-1-phosphate adenylyltransferase [Mitsuokella multacida DSM
20544]
Length = 244
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 27/221 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-----QEAFIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NIKRA EKG + E +YE YG
Sbjct: 36 VRMGGADPTGNMRLKLALSKAKSNNIPKD----NIKRAIEKGLGNSESGTYEELMYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKD 133
GG ++++++LTD R+ A VR + GG + G V + F++ V + K T D+D
Sbjct: 92 PGGTAVMLDILTDNRNRTAADVRHLFSKFGGNLGQDGCVAWMFKKKAVFIVEKETFDDED 151
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAE-RYYKVVSTSDNYTDITTKLREAGIPFETD 192
L++I LDAGAED+ +AE +++ + D + DI L E GI ET
Sbjct: 152 ALMEIVLDAGAEDM-------------KAEDEVFEITAEPDAFDDIEKALGEKGI--ETA 196
Query: 193 NGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P TT+ + + E + LI L E DDV VY++
Sbjct: 197 SAEVTMVPDTTVHLAGKDAEKMQNLIDALEENDDVQNVYSN 237
>gi|169629972|ref|YP_001703621.1| hypothetical protein MAB_2888c [Mycobacterium abscessus ATCC 19977]
gi|365870772|ref|ZP_09410315.1| hypothetical protein MMAS_27170 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679811|ref|YP_006521346.1| transcriptional regulator [Mycobacterium massiliense str. GO 06]
gi|418247997|ref|ZP_12874383.1| hypothetical protein MAB47J26_05205 [Mycobacterium abscessus 47J26]
gi|418420982|ref|ZP_12994160.1| hypothetical protein MBOL_27060 [Mycobacterium abscessus subsp.
bolletii BD]
gi|419710121|ref|ZP_14237588.1| hypothetical protein OUW_11309 [Mycobacterium abscessus M93]
gi|419716647|ref|ZP_14244042.1| hypothetical protein S7W_19523 [Mycobacterium abscessus M94]
gi|420864294|ref|ZP_15327684.1| hypothetical protein MA4S0303_2652 [Mycobacterium abscessus
4S-0303]
gi|420869085|ref|ZP_15332467.1| hypothetical protein MA4S0726RA_2586 [Mycobacterium abscessus
4S-0726-RA]
gi|420873530|ref|ZP_15336907.1| hypothetical protein MA4S0726RB_2176 [Mycobacterium abscessus
4S-0726-RB]
gi|420910490|ref|ZP_15373802.1| hypothetical protein MA6G0125R_2002 [Mycobacterium abscessus
6G-0125-R]
gi|420916943|ref|ZP_15380247.1| hypothetical protein MA6G0125S_3042 [Mycobacterium abscessus
6G-0125-S]
gi|420922107|ref|ZP_15385404.1| hypothetical protein MA6G0728S_2726 [Mycobacterium abscessus
6G-0728-S]
gi|420927769|ref|ZP_15391051.1| hypothetical protein MA6G1108_2968 [Mycobacterium abscessus
6G-1108]
gi|420931961|ref|ZP_15395236.1| hypothetical protein MM1S1510930_2788 [Mycobacterium massiliense
1S-151-0930]
gi|420939072|ref|ZP_15402341.1| hypothetical protein MM1S1520914_2991 [Mycobacterium massiliense
1S-152-0914]
gi|420942213|ref|ZP_15405470.1| hypothetical protein MM1S1530915_2330 [Mycobacterium massiliense
1S-153-0915]
gi|420946561|ref|ZP_15409811.1| hypothetical protein MM1S1540310_2342 [Mycobacterium massiliense
1S-154-0310]
gi|420952464|ref|ZP_15415708.1| hypothetical protein MM2B0626_2696 [Mycobacterium massiliense
2B-0626]
gi|420956634|ref|ZP_15419871.1| hypothetical protein MM2B0107_2033 [Mycobacterium massiliense
2B-0107]
gi|420962017|ref|ZP_15425242.1| hypothetical protein MM2B1231_2761 [Mycobacterium massiliense
2B-1231]
gi|420967314|ref|ZP_15430519.1| hypothetical protein MM3A0810R_3066 [Mycobacterium abscessus
3A-0810-R]
gi|420978109|ref|ZP_15441287.1| hypothetical protein MA6G0212_3028 [Mycobacterium abscessus
6G-0212]
gi|420983496|ref|ZP_15446663.1| hypothetical protein MA6G0728R_2973 [Mycobacterium abscessus
6G-0728-R]
gi|420988982|ref|ZP_15452138.1| hypothetical protein MA4S0206_2673 [Mycobacterium abscessus
4S-0206]
gi|420992595|ref|ZP_15455742.1| hypothetical protein MM2B0307_2009 [Mycobacterium massiliense
2B-0307]
gi|420998442|ref|ZP_15461579.1| hypothetical protein MM2B0912R_3098 [Mycobacterium massiliense
2B-0912-R]
gi|421002881|ref|ZP_15466005.1| hypothetical protein MM2B0912S_2702 [Mycobacterium massiliense
2B-0912-S]
gi|421007526|ref|ZP_15470637.1| hypothetical protein MA3A0119R_2968 [Mycobacterium abscessus
3A-0119-R]
gi|421013459|ref|ZP_15476541.1| hypothetical protein MA3A0122R_3035 [Mycobacterium abscessus
3A-0122-R]
gi|421018361|ref|ZP_15481420.1| hypothetical protein MA3A0122S_2586 [Mycobacterium abscessus
3A-0122-S]
gi|421024204|ref|ZP_15487249.1| hypothetical protein MA3A0731_3125 [Mycobacterium abscessus
3A-0731]
gi|421029638|ref|ZP_15492671.1| hypothetical protein MA3A0930R_3071 [Mycobacterium abscessus
3A-0930-R]
gi|421034356|ref|ZP_15497377.1| hypothetical protein MA3A0930S_2999 [Mycobacterium abscessus
3A-0930-S]
gi|421039767|ref|ZP_15502776.1| hypothetical protein MA4S0116R_2633 [Mycobacterium abscessus
4S-0116-R]
gi|421043884|ref|ZP_15506885.1| hypothetical protein MA4S0116S_1724 [Mycobacterium abscessus
4S-0116-S]
gi|421049843|ref|ZP_15512837.1| hypothetical protein MMCCUG48898_2844 [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|226701554|sp|B1MCJ6.1|Y2888_MYCA9 RecName: Full=Probable transcriptional regulatory protein MAB_2888c
gi|169241939|emb|CAM62967.1| Conserved hypothetical protein [Mycobacterium abscessus]
gi|353452490|gb|EHC00884.1| hypothetical protein MAB47J26_05205 [Mycobacterium abscessus 47J26]
gi|363997044|gb|EHM18258.1| hypothetical protein MMAS_27170 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363998433|gb|EHM19640.1| hypothetical protein MBOL_27060 [Mycobacterium abscessus subsp.
bolletii BD]
gi|382940208|gb|EIC64532.1| hypothetical protein S7W_19523 [Mycobacterium abscessus M94]
gi|382941914|gb|EIC66232.1| hypothetical protein OUW_11309 [Mycobacterium abscessus M93]
gi|392068555|gb|EIT94402.1| hypothetical protein MA4S0726RA_2586 [Mycobacterium abscessus
4S-0726-RA]
gi|392071269|gb|EIT97115.1| hypothetical protein MA4S0303_2652 [Mycobacterium abscessus
4S-0303]
gi|392072558|gb|EIT98399.1| hypothetical protein MA4S0726RB_2176 [Mycobacterium abscessus
4S-0726-RB]
gi|392112484|gb|EIU38253.1| hypothetical protein MA6G0125R_2002 [Mycobacterium abscessus
6G-0125-R]
gi|392121083|gb|EIU46849.1| hypothetical protein MA6G0125S_3042 [Mycobacterium abscessus
6G-0125-S]
gi|392131943|gb|EIU57689.1| hypothetical protein MA6G0728S_2726 [Mycobacterium abscessus
6G-0728-S]
gi|392135002|gb|EIU60743.1| hypothetical protein MA6G1108_2968 [Mycobacterium abscessus
6G-1108]
gi|392136720|gb|EIU62457.1| hypothetical protein MM1S1510930_2788 [Mycobacterium massiliense
1S-151-0930]
gi|392144587|gb|EIU70312.1| hypothetical protein MM1S1520914_2991 [Mycobacterium massiliense
1S-152-0914]
gi|392149640|gb|EIU75354.1| hypothetical protein MM1S1530915_2330 [Mycobacterium massiliense
1S-153-0915]
gi|392153591|gb|EIU79297.1| hypothetical protein MM1S1540310_2342 [Mycobacterium massiliense
1S-154-0310]
gi|392157776|gb|EIU83473.1| hypothetical protein MM2B0626_2696 [Mycobacterium massiliense
2B-0626]
gi|392166383|gb|EIU92068.1| hypothetical protein MA6G0212_3028 [Mycobacterium abscessus
6G-0212]
gi|392168492|gb|EIU94170.1| hypothetical protein MA6G0728R_2973 [Mycobacterium abscessus
6G-0728-R]
gi|392183261|gb|EIV08912.1| hypothetical protein MA4S0206_2673 [Mycobacterium abscessus
4S-0206]
gi|392185379|gb|EIV11028.1| hypothetical protein MM2B0307_2009 [Mycobacterium massiliense
2B-0307]
gi|392186254|gb|EIV11901.1| hypothetical protein MM2B0912R_3098 [Mycobacterium massiliense
2B-0912-R]
gi|392194339|gb|EIV19959.1| hypothetical protein MM2B0912S_2702 [Mycobacterium massiliense
2B-0912-S]
gi|392198979|gb|EIV24589.1| hypothetical protein MA3A0119R_2968 [Mycobacterium abscessus
3A-0119-R]
gi|392203209|gb|EIV28804.1| hypothetical protein MA3A0122R_3035 [Mycobacterium abscessus
3A-0122-R]
gi|392210124|gb|EIV35695.1| hypothetical protein MA3A0122S_2586 [Mycobacterium abscessus
3A-0122-S]
gi|392212219|gb|EIV37782.1| hypothetical protein MA3A0731_3125 [Mycobacterium abscessus
3A-0731]
gi|392224859|gb|EIV50378.1| hypothetical protein MA4S0116R_2633 [Mycobacterium abscessus
4S-0116-R]
gi|392225727|gb|EIV51243.1| hypothetical protein MA3A0930R_3071 [Mycobacterium abscessus
3A-0930-R]
gi|392227677|gb|EIV53190.1| hypothetical protein MA3A0930S_2999 [Mycobacterium abscessus
3A-0930-S]
gi|392237736|gb|EIV63230.1| hypothetical protein MA4S0116S_1724 [Mycobacterium abscessus
4S-0116-S]
gi|392238446|gb|EIV63939.1| hypothetical protein MMCCUG48898_2844 [Mycobacterium massiliense
CCUG 48898]
gi|392249482|gb|EIV74957.1| hypothetical protein MM2B1231_2761 [Mycobacterium massiliense
2B-1231]
gi|392252755|gb|EIV78224.1| hypothetical protein MM3A0810R_3066 [Mycobacterium abscessus
3A-0810-R]
gi|392253533|gb|EIV79001.1| hypothetical protein MM2B0107_2033 [Mycobacterium massiliense
2B-0107]
gi|395458076|gb|AFN63739.1| putative transcriptional regulatory protein [Mycobacterium
massiliense str. GO 06]
Length = 251
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGGADWQTIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E L+D R+ VR + GG MADPGSV + F R VV ++ +D +L
Sbjct: 96 VAVLIECLSDNRNRAAGEVRVAMTRNGGSMADPGSVSYLFSRKGVVTLEKNSLSEDDVLT 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
L+AGAE+V +D E ++V+S + + L+EAGI +E+ S
Sbjct: 156 AVLEAGAEEV-------NDLGE-----TFEVISEPTDLVAVRQALQEAGIDYESAEAS-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ VD E +L+ L + DDV VYT+
Sbjct: 203 QPSMSVPVDVETARKVFKLVDALEDSDDVQNVYTN 237
>gi|75676913|ref|YP_319334.1| hypothetical protein Nwi_2729 [Nitrobacter winogradskyi Nb-255]
gi|119391327|sp|Q3SP09.1|Y2729_NITWN RecName: Full=Probable transcriptional regulatory protein Nwi_2729
gi|74421783|gb|ABA05982.1| Protein of unknown function DUF28 [Nitrobacter winogradskyi Nb-255]
Length = 248
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 109/215 (50%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+AS E++ E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVIAARAENMPKDNIERAIKKASGNDAESYDELRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+++EVLTD R+ + +R GG + + GSV F F R V+ A D +L+ A
Sbjct: 96 VIMEVLTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRLGVIEYDADKASVDDMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV+ +DE E Y ++ D + D+ L F L+
Sbjct: 156 IEAGADDVV--------SDEGGHEIY----ASQDTFRDVAKALEST---FGEARKVALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TI VDD E +LI L E DDV VY +
Sbjct: 201 KPQNTIAVDDNTGEKLLKLIDLLNEHDDVQNVYAN 235
>gi|375100151|ref|ZP_09746414.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
cyanea NA-134]
gi|374660883|gb|EHR60761.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
cyanea NA-134]
Length = 249
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 112/215 (52%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP+D +ER KR + E G + YE Y GG
Sbjct: 36 ARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGADWQNITYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ + VR + GG +ADPGSV + F R VV + +D +L
Sbjct: 96 VAVLIECLTDNKNRAASEVRTALTRNGGSLADPGSVAYLFNRKGVVIMPKNGLSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E+ Y+++S + + + T L++AG +E+ +
Sbjct: 156 AVLDAGAEEV-------NDLGEN-----YEIISEAGDLVAVRTALQDAGYDYESAD-MNF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP + +D E LI L + DDV VY++
Sbjct: 203 LPSVNVPLDAENARKVFRLIDALEDCDDVQNVYSN 237
>gi|218780798|ref|YP_002432116.1| hypothetical protein Dalk_2958 [Desulfatibacillum alkenivorans
AK-01]
gi|226701573|sp|B8FL13.1|Y2958_DESAA RecName: Full=Probable transcriptional regulatory protein Dalk_2958
gi|218762182|gb|ACL04648.1| protein of unknown function DUF28 [Desulfatibacillum alkenivorans
AK-01]
Length = 247
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 14/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GG +P +N L + AK ++PKD ER IK+ + + + E+ YE YG GG
Sbjct: 36 ARMGGGDPDANPRLRTAINAAKAENMPKDNWERAIKKGTGELEGVNYEEFQYEGYGPGGG 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ A +R + CGG + + G V + F + + + + D+D L++I
Sbjct: 96 AVLVESLTDNKNRAAAEIRHIFSKCGGSLGEAGCVAWMFDKKGYIVVNQSVTDEDTLMEI 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV E A ++V++ D+Y + + AGI E D L
Sbjct: 156 ALEAGAEDVRE------------AGDVFEVITQPDDYDAVKEAIDAAGIETE-DASVTKL 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
P T+EV + E L+ L + DDV VYT
Sbjct: 203 PQNTVEVTGKEAEQMVRLLQTLDDCDDVQNVYT 235
>gi|254428271|ref|ZP_05041978.1| conserved hypothetical protein TIGR01033 [Alcanivorax sp. DG881]
gi|196194440|gb|EDX89399.1| conserved hypothetical protein TIGR01033 [Alcanivorax sp. DG881]
Length = 248
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 119/215 (55%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K GG P N L A ++KA ++ +D ++R +KR + + ++++ YE YG GGV
Sbjct: 36 AKMGGGEPNDNPRLRAAIDKALGQNMTRDTIDRAVKRGAGGDDDGNMDEITYEGYGKGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE +TD + R+VA VR G + GSV F F + + + + D+++L+++
Sbjct: 96 AVLVETMTDNVNRTVAEVRHAFSKFAGNLGTSGSVAFLFTKRGEIFFE-SGVDEEKLMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD-NYTDITTKLREAGIPFETDNGSEL 197
AL+AGAEDV E+ + + V +T D ++ ++ LREAG+ F + +
Sbjct: 155 ALEAGAEDV-----------EEVGDDGFVVTTTPDKSFGEVVDALREAGLEF-AEAEVTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T E+D + E +++I L +LDDV VYT+
Sbjct: 203 HPSTEAEMDADTAETVQKMIDMLEDLDDVQNVYTN 237
>gi|414580775|ref|ZP_11437915.1| hypothetical protein MA5S1215_4870 [Mycobacterium abscessus
5S-1215]
gi|420880042|ref|ZP_15343409.1| hypothetical protein MA5S0304_1823 [Mycobacterium abscessus
5S-0304]
gi|420883868|ref|ZP_15347229.1| hypothetical protein MA5S0421_2076 [Mycobacterium abscessus
5S-0421]
gi|420890000|ref|ZP_15353348.1| hypothetical protein MA5S0422_2757 [Mycobacterium abscessus
5S-0422]
gi|420895815|ref|ZP_15359154.1| hypothetical protein MA5S0708_4843 [Mycobacterium abscessus
5S-0708]
gi|420899847|ref|ZP_15363178.1| hypothetical protein MA5S0817_5208 [Mycobacterium abscessus
5S-0817]
gi|420905758|ref|ZP_15369076.1| hypothetical protein MA5S1212_4595 [Mycobacterium abscessus
5S-1212]
gi|420972377|ref|ZP_15435571.1| hypothetical protein MA5S0921_2555 [Mycobacterium abscessus
5S-0921]
gi|392084951|gb|EIU10776.1| hypothetical protein MA5S0304_1823 [Mycobacterium abscessus
5S-0304]
gi|392087191|gb|EIU13014.1| hypothetical protein MA5S0421_2076 [Mycobacterium abscessus
5S-0421]
gi|392087748|gb|EIU13570.1| hypothetical protein MA5S0422_2757 [Mycobacterium abscessus
5S-0422]
gi|392095127|gb|EIU20922.1| hypothetical protein MA5S0708_4843 [Mycobacterium abscessus
5S-0708]
gi|392097208|gb|EIU23002.1| hypothetical protein MA5S0817_5208 [Mycobacterium abscessus
5S-0817]
gi|392103662|gb|EIU29448.1| hypothetical protein MA5S1212_4595 [Mycobacterium abscessus
5S-1212]
gi|392115927|gb|EIU41695.1| hypothetical protein MA5S1215_4870 [Mycobacterium abscessus
5S-1215]
gi|392167489|gb|EIU93171.1| hypothetical protein MA5S0921_2555 [Mycobacterium abscessus
5S-0921]
Length = 251
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGGADWQTIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E L+D R+ VR + GG MADPGSV + F R VV ++ +D +L
Sbjct: 96 VAVLIECLSDNRNRAAGEVRVAMTRNGGSMADPGSVSYLFSRKGVVTLEKNSLSEDDVLT 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
L+AGAE+V +D E ++V+S + + L+EAGI +E+ S
Sbjct: 156 AVLEAGAEEV-------NDLGE-----TFEVISEPTDLVAVRQALQEAGIDYESAEAS-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ VD E +L+ L + DDV VYT+
Sbjct: 203 QPSMSVPVDVETARKVFKLVDALEDSDDVQNVYTN 237
>gi|381400228|ref|ZP_09925205.1| hypothetical protein KKB_00262 [Kingella kingae PYKK081]
gi|380834710|gb|EIC14538.1| hypothetical protein KKB_00262 [Kingella kingae PYKK081]
Length = 241
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 115/216 (53%), Gaps = 15/216 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P +N L ++KA + ++PKD V+R I + + + +IE YE YG GG
Sbjct: 36 AKQGGGDPNANPRLRLAMDKAWDNNMPKDNVQRAIDKGTGNLEGVDYIELRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD TR+VA VR GG + G V F F + +T+AD+D L++
Sbjct: 96 AVMVDCMTDNKTRTVADVRHAFTKHGGNLGTDGCVAFNFEHQGY--LVYTNADEDSLMEA 153
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV+ V++D E V++ ++ I L +AG E D +
Sbjct: 154 ALEAGAEDVL---VDDDGVIE--------VITAPADWAQIKITLEQAGFKAE-DGDVTMR 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T E+ + E ++LI L +LDDV VYT +
Sbjct: 202 AQNTTELSGDDAEKMQKLIDALEDLDDVQNVYTSAV 237
>gi|398873712|ref|ZP_10628964.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM74]
gi|398198557|gb|EJM85512.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM74]
Length = 248
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKG-QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 TGAADTDDVVELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L++ A++A A+DV+ NED + V ++ +
Sbjct: 134 FERKGQISFA-AGVDEDALMEAAMEADADDVV---TNEDGS--------IDVFTSFSGFY 181
Query: 177 DITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG F+ D+ +LP T+ E+D E E +LI L +LDDV VY++
Sbjct: 182 SVRNALEAAG--FKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|365840288|ref|ZP_09381486.1| DNA-binding regulatory protein, YebC/PmpR family [Anaeroglobus
geminatus F0357]
gi|364561864|gb|EHM39740.1| DNA-binding regulatory protein, YebC/PmpR family [Anaeroglobus
geminatus F0357]
Length = 246
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 24/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-----EAFIEKVYEVYG 74
V+ GG +PT N L L+KAKE ++PK+ NI RA +KG +++ E VYE YG
Sbjct: 36 VRMGGADPTGNMRLKLALQKAKENNIPKE----NINRAVQKGAGTLEGQSYEEIVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ + VLTD R+ A VR + GG M + G V + F+ V + AD+D+
Sbjct: 92 PAGVALTLSVLTDNRNRTAAEVRHIFSKYGGNMGETGCVAWMFKNRGVFIVAGEAADEDR 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L++IAL+AGA+D+ D DE Y++++ + Y D+ L + IP E
Sbjct: 152 LMEIALEAGADDI------RADGDE------YEIITVPEAYDDVEKALADNRIPVEHAQI 199
Query: 195 SELLPITTIEVD-DEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P + + D+A +L + +I +LDDV VY +
Sbjct: 200 T-MVPDNFVALGKDDAQKL-ENMIDAFDDLDDVQDVYHN 236
>gi|24213420|ref|NP_710901.1| hypothetical protein LA_0720 [Leptospira interrogans serovar Lai
str. 56601]
gi|45658716|ref|YP_002802.1| hypothetical protein LIC12886 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386073060|ref|YP_005987377.1| hypothetical protein LIF_A0586 [Leptospira interrogans serovar Lai
str. IPAV]
gi|417760114|ref|ZP_12408142.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000624]
gi|417764294|ref|ZP_12412264.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|417775724|ref|ZP_12423575.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000621]
gi|417786754|ref|ZP_12434442.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. C10069]
gi|418669662|ref|ZP_13231041.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
gi|418673802|ref|ZP_13235113.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000623]
gi|418688663|ref|ZP_13249807.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. FPW2026]
gi|418702019|ref|ZP_13262937.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Bataviae str. L1111]
gi|418711254|ref|ZP_13272019.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. UI 08368]
gi|418722454|ref|ZP_13281620.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 12621]
gi|418729656|ref|ZP_13288203.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 12758]
gi|421083760|ref|ZP_15544631.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
santarosai str. HAI1594]
gi|421101977|ref|ZP_15562587.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Icterohaemorrhagiae str. Verdun LP]
gi|421121047|ref|ZP_15581348.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. Brem 329]
gi|421125676|ref|ZP_15585921.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. 2006006986]
gi|421135272|ref|ZP_15595396.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. Andaman]
gi|33517031|sp|Q8F839.1|Y720_LEPIN RecName: Full=Probable transcriptional regulatory protein LA_0720
gi|49037276|sp|P62038.1|Y2886_LEPIC RecName: Full=Probable transcriptional regulatory protein LIC_12886
gi|24194184|gb|AAN47919.1|AE011259_10 conserved hypothetical protein [Leptospira interrogans serovar Lai
str. 56601]
gi|45601960|gb|AAS71439.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353456849|gb|AER01394.1| conserved hypothetical protein [Leptospira interrogans serovar Lai
str. IPAV]
gi|400353530|gb|EJP05699.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|400362163|gb|EJP18107.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. FPW2026]
gi|409944073|gb|EKN89662.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000624]
gi|409950029|gb|EKO04560.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. C10069]
gi|409963822|gb|EKO27544.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 12621]
gi|410020530|gb|EKO87331.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. Andaman]
gi|410346036|gb|EKO97068.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. Brem 329]
gi|410368122|gb|EKP23500.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Icterohaemorrhagiae str. Verdun LP]
gi|410433677|gb|EKP78017.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
santarosai str. HAI1594]
gi|410436782|gb|EKP85893.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. 2006006986]
gi|410574598|gb|EKQ37629.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000621]
gi|410579080|gb|EKQ46930.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. 2002000623]
gi|410754593|gb|EKR16243.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
gi|410759151|gb|EKR25370.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Bataviae str. L1111]
gi|410768407|gb|EKR43655.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. UI 08368]
gi|410775834|gb|EKR55825.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans str. UI 12758]
gi|455791809|gb|EMF43603.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Lora str. TE 1992]
gi|456824629|gb|EMF73055.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Canicola str. LT1962]
gi|456969473|gb|EMG10477.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Grippotyphosa str. LT2186]
gi|456988000|gb|EMG23179.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
interrogans serovar Copenhageni str. LT2050]
Length = 249
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 119/214 (55%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER I++ + E + E +YE +G GG++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRKGTGELEGVTYEECLYECFGPGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQISEDELVDVA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE D Y+V+S DNY + L E G+ E ++ +P
Sbjct: 157 VGGGAEDVI----NEGDV--------YRVISVPDNYETVLHALNEKGLKSE-ESEIRYIP 203
Query: 200 ITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
+ + E+ D E E +LI +L DDV +V ++
Sbjct: 204 LVSSEIADKEVAEKIMKLIDQLDGHDDVTSVTSN 237
>gi|427405777|ref|ZP_18895982.1| YebC/PmpR family DNA-binding regulatory protein [Selenomonas sp.
F0473]
gi|425708618|gb|EKU71657.1| YebC/PmpR family DNA-binding regulatory protein [Selenomonas sp.
F0473]
Length = 242
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 27/221 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI RA +KG A + E VYE YG
Sbjct: 36 VRMGGGDPTGNMRLKLALSKAKANNIPKD----NINRAIQKGLGATEGSNYDEVVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKD 133
GG ++++++LTD R+ A VR + GG + G V + F++ V + K + D+D
Sbjct: 92 PGGTAVLLDILTDNRNRTAADVRHLFSKYGGNLGQDGCVSWMFKKKAVFIVEKDSFNDED 151
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAER-YYKVVSTSDNYTDITTKLREAGIPFETD 192
LL++ LDAGAED+ RAE +++++ D + I T L E GI ET
Sbjct: 152 ALLELVLDAGAEDM-------------RAEEDIFEIIAAPDTFESIETALGEKGI--ETA 196
Query: 193 NGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P TT+ + + E + LI L + DDV VY++
Sbjct: 197 SAEVTMVPDTTVSLSENDAEKMQNLIDALEDNDDVQNVYSN 237
>gi|182439807|ref|YP_001827526.1| hypothetical protein SGR_6014 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326780471|ref|ZP_08239736.1| UPF0082 protein yeeN [Streptomyces griseus XylebKG-1]
gi|226707774|sp|B1W3G1.1|Y6014_STRGG RecName: Full=Probable transcriptional regulatory protein SGR_6014
gi|178468323|dbj|BAG22843.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326660804|gb|EGE45650.1| UPF0082 protein yeeN [Streptomyces griseus XylebKG-1]
Length = 250
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP +E +KR E G + +YE YG GV
Sbjct: 37 RSGGVDPDGNPTLVDAIQKAKKSSVPNKNIESAVKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVILPKGELTEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++VVS + + + T L+EAGI +++ + L
Sbjct: 157 VLDAGAEEV-------NDLGE-----TFEVVSEATDMVAVRTALQEAGIDYDSAE-ANFL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|398955930|ref|ZP_10676677.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM33]
gi|398150396|gb|EJM38989.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM33]
Length = 248
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R I R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAIARG 73
Query: 58 SEKG-QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 TGAADTDDVVELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L++ A++A A+DV+ NED + V ++ +
Sbjct: 134 FERKGQISFA-AGVDEDALMEAAMEADADDVV---TNEDGS--------IDVFTSFAGFY 181
Query: 177 DITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG F+ D+ +LP T+ E+D E E +LI L +LDDV VY++
Sbjct: 182 SVRNALEAAG--FKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|145224410|ref|YP_001135088.1| hypothetical protein Mflv_3828 [Mycobacterium gilvum PYR-GCK]
gi|315444743|ref|YP_004077622.1| hypothetical protein Mspyr1_31710 [Mycobacterium gilvum Spyr1]
gi|189040308|sp|A4TD17.1|Y3828_MYCGI RecName: Full=Probable transcriptional regulatory protein Mflv_3828
gi|145216896|gb|ABP46300.1| protein of unknown function DUF28 [Mycobacterium gilvum PYR-GCK]
gi|315263046|gb|ADT99787.1| conserved hypothetical protein TIGR01033 [Mycobacterium gilvum
Spyr1]
Length = 251
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKNFAKLIKNIEVAARTGGGDPGGNPTLYDAIQKAKKNSVPNDNIERARKRGAGEEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ YE YG GV+I+VE LTD R+ VR + GG MADPGSV + F R V
Sbjct: 81 ADWQNITYEGYGPNGVAILVECLTDNKNRAAGEVRVAMTRNGGNMADPGSVAYLFTRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V + +D +L LDAGAEDV D D ++++S + + T L
Sbjct: 141 VTLDKNGLSEDDVLAAVLDAGAEDV------NDLGDS------FEIISEPTDLVAVRTAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++AGI +++ S P ++ VD + +L+ L + DDV VYT+
Sbjct: 189 QDAGIEYDSAEAS-FQPSVSVPVDLDGARKVLKLVDALEDSDDVQDVYTN 237
>gi|390630020|ref|ZP_10258010.1| UPF0082 protein HMPREF0877_0949 [Weissella confusa LBAE C39-2]
gi|390484811|emb|CCF30358.1| UPF0082 protein HMPREF0877_0949 [Weissella confusa LBAE C39-2]
Length = 240
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P SN L V++KAK ++PKD ++R + +AS G + E YE YG GV+
Sbjct: 36 AKAGGVDPDSNASLRLVIDKAKAANMPKDNIQRALDKASGAGGANYQELTYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFT---DADKDQLL 136
++V+ LTD I R+ A+VR K GG++ GSV F+F R + I+ T D D+DQL
Sbjct: 96 VLVQALTDNINRTAASVRSTFKHFGGELGTTGSVSFQFDRKGYIEIERTEDNDIDEDQLF 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ L+AGAED+ T +D+ +++ + ++ ++ L G D +
Sbjct: 156 EDMLEAGAEDM--------KTYDDQ----FEIYTDPKSFPEVRDALEAKGYTLVNDEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + V ++ L+ +L E DDV AV+T
Sbjct: 203 MVAQNPMAVPEDKQASLASLVDELEENDDVQAVFT 237
>gi|389706431|ref|ZP_10186444.1| hypothetical protein HADU_05593 [Acinetobacter sp. HA]
gi|388610566|gb|EIM39683.1| hypothetical protein HADU_05593 [Acinetobacter sp. HA]
Length = 249
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 129/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + K GGP+ SN L AV+EKA +++ +D++ R I+R A
Sbjct: 16 KQDASRGKLFTKYIRELTTAAKLGGPDAGSNPRLRAVVEKALSVNMTRDVINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV F F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTNGSVAFLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +DQ++++AL+AGAED+ + DED V++T +++
Sbjct: 136 KRG--EITFEDVSLEDQIMEVALEAGAEDI--------EVDEDE----ILVITTPESFGT 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALAAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDVQNVYTN 236
>gi|433647445|ref|YP_007292447.1| DNA-binding regulatory protein, YebC/PmpR family [Mycobacterium
smegmatis JS623]
gi|433297222|gb|AGB23042.1| DNA-binding regulatory protein, YebC/PmpR family [Mycobacterium
smegmatis JS623]
Length = 251
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 119/240 (49%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I K++ R +K GG +P N L ++KAK+ VP D +ER
Sbjct: 11 KHKKAVIDARRGKNFARLIKNIEVAARVGGGDPGGNPTLYDAIQKAKKNSVPNDNIERAR 70
Query: 55 KRAS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E G + YE YG GV++++E LTD R+ VR V GG MADPGS
Sbjct: 71 KRGAGEEAGGADYQAITYEGYGPNGVAVLIECLTDNRNRAAGEVRVAVTRNGGNMADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R +V + +D +L L+AGAE+V + E ++++
Sbjct: 131 VSYLFSRKGLVTLAKDGLTEDDVLTAVLEAGAEEV------------NDLEDSFEIICEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + T L++AGI +E+ S P ++ VD + +LI L +LDDV VYT+
Sbjct: 179 SDLVAVRTALQDAGIDYESAEAS-FQPSVSVPVDLDGARKVVKLIDALEDLDDVQDVYTN 237
>gi|403744524|ref|ZP_10953750.1| hypothetical protein URH17368_1041 [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122058|gb|EJY56306.1| hypothetical protein URH17368_1041 [Alicyclobacillus hesperidum
URH17-3-68]
Length = 198
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 114/199 (57%), Gaps = 18/199 (9%)
Query: 37 LEKAKELDVPKDIVERNIKRASEKGQE-AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAA 95
+E+AK ++P + + R I +A+ + + E +YE YG GV++++E++TD R+ A
Sbjct: 5 IERAKANNLPAENISRTIAKATGTLEGVTYEELLYEGYGPHGVALLIEIVTDNRNRTAAE 64
Query: 96 VREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED 155
VR + + GG +A+ G+V + F+R + + + D+L+ +AL+AGAEDVIE
Sbjct: 65 VRHIFRKRGGSLAESGAVAWMFKRQGQIEVPKAGVEGDELMMLALEAGAEDVIEQ----- 119
Query: 156 DTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL--PITTIEVDDEAMELN 213
E + VV+ +++ + L EAG+ + + +EL+ P T IE+ DEA+E
Sbjct: 120 -------ENAFVVVTAPEDFKQVRVALEEAGVQY---DDAELVYEPATKIELSDEALEEV 169
Query: 214 KELIAKLLELDDVDAVYTD 232
EL+ L + DDV VYT+
Sbjct: 170 YELVEALEDCDDVQTVYTN 188
>gi|332716457|ref|YP_004443923.1| hypothetical protein AGROH133_12039 [Agrobacterium sp. H13-3]
gi|417860867|ref|ZP_12505922.1| hypothetical protein Agau_L100306 [Agrobacterium tumefaciens F2]
gi|418298584|ref|ZP_12910422.1| hypothetical protein ATCR1_13698 [Agrobacterium tumefaciens
CCNWGS0286]
gi|418406054|ref|ZP_12979374.1| hypothetical protein AT5A_02490 [Agrobacterium tumefaciens 5A]
gi|325063142|gb|ADY66832.1| hypothetical protein AGROH133_12039 [Agrobacterium sp. H13-3]
gi|338821271|gb|EGP55240.1| hypothetical protein Agau_L100306 [Agrobacterium tumefaciens F2]
gi|355536497|gb|EHH05770.1| hypothetical protein ATCR1_13698 [Agrobacterium tumefaciens
CCNWGS0286]
gi|358007967|gb|EHK00290.1| hypothetical protein AT5A_02490 [Agrobacterium tumefaciens 5A]
Length = 248
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKAGMPDPNMNARLRLAIQNAKAQSMPKDNIERAIKKASGADSENYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVE LTD R+ + VR + GG + + GSV F F R + K D D++++ A
Sbjct: 96 VVVEALTDNRNRTASNVRSIFTKAGGALGETGSVSFSFDRVGEITYKAEVGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV + +E + ++ + +++ L G+ E ++ +
Sbjct: 156 IEAGADDV------------ESSEDGHTIICGFEAMNEVSKALE--GVLGEAESVKAIWK 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD+E + +LI L + DDV +VY++
Sbjct: 202 PQNTVPVDEEKAQSLMKLIDNLEDDDDVQSVYSN 235
>gi|397631373|gb|EJK70127.1| hypothetical protein THAOC_08541 [Thalassiosira oceanica]
Length = 308
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 125/233 (53%), Gaps = 22/233 (9%)
Query: 4 KQSCIRGWGRKSYLRNVKKGG-PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ 62
K++ + + K + VK+GG P+P +N LA +++ AK VP D + R IKRA+EK
Sbjct: 85 KKAKVNAYYGKKIIMAVKQGGSPDPVANRQLAELIKAAKNNSVPVDNINRAIKRATEKDA 144
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
F E +E YG+GG S+++ VL+D RS A V+ V GK+A+ GSV+F +
Sbjct: 145 GDFSESKFEAYGFGGASLIINVLSDNPNRSTADVKSAVNKNNGKLAESGSVLFMYDLKGK 204
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI--TT 180
V I + D+++LL A+DAG +D + D DE+ TS YTD T+
Sbjct: 205 VEIP-CEVDEEELLMAAIDAGVDD-----MELVDGDEE---------GTSIVYTDPKETS 249
Query: 181 KLREAGIPFETDNGSEL----LPITTIEVDDEAMELNKELIAKLLELDDVDAV 229
L +A + GS++ + +E +E E N ++I L +LDDVD+V
Sbjct: 250 LLFDAVKSMGLEEGSKMSLSHVSKAPVECSEEDFEKNMKIIDALEDLDDVDSV 302
>gi|284048865|ref|YP_003399204.1| hypothetical protein Acfer_1531 [Acidaminococcus fermentans DSM
20731]
gi|283953086|gb|ADB47889.1| protein of unknown function DUF28 [Acidaminococcus fermentans DSM
20731]
Length = 243
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 114/219 (52%), Gaps = 24/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GGP+PT N L L KAK ++PKD NIKRA KGQ A + + YE YG
Sbjct: 36 VRMGGPDPTGNMRLKLALSKAKANNIPKD----NIKRAIAKGQGATEGSNYEQITYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKD 133
GV+I+V LTD R+ A VR V GG M + G V + F+ V ++ A +D
Sbjct: 92 PAGVAIMVSALTDNRNRTAADVRHVFSK-GGNMGESGCVGWMFKNKGVFTVEKEGAPSED 150
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
++L++ALDAGAED+ +T +D Y + ++ ++Y + L + I
Sbjct: 151 EVLEVALDAGAEDM--------ETTDDA----YVITTSPEDYDAVEKALADHNIEVAMSE 198
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
S L+P TI V E E + +I ELDDV VYT+
Sbjct: 199 LS-LIPDNTIAVAGEDAEKVQNMIDAFNELDDVQDVYTN 236
>gi|436836952|ref|YP_007322168.1| protein of unknown function DUF28 [Fibrella aestuarina BUZ 2]
gi|384068365|emb|CCH01575.1| protein of unknown function DUF28 [Fibrella aestuarina BUZ 2]
Length = 237
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 122/241 (50%), Gaps = 24/241 (9%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK ++ WG+ K++ R VK GGP+P +N L AV++ AK ++PK+ VER
Sbjct: 8 RKARKMKRWGQMAKTFTRIGKDIVIAVKAGGPDPDTNGRLRAVIQNAKAANMPKENVERA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK+AS K QE + E VYE Y GV IV+E TD + R+VA +R GG + G +
Sbjct: 68 IKKASSKEQEDYKEIVYEGYAPHGVGIVIETATDNLNRTVANIRSYFNKLGGSLGTQGML 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F R V I D D+L +D GA+++ E D + ++ Y +
Sbjct: 128 DFMFTRKSVFRITAEGVDMDELELELIDFGADEL------EFDEEANQIVIYGDFTA--- 178
Query: 174 NYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ + L EAG + G+E +P E+ DE + ++LI ++ E DDV VY
Sbjct: 179 -FGALQKHLEEAGYELK---GAEFERIPTDYKELTDEQVADVEKLIERIEEDDDVQMVYH 234
Query: 232 D 232
+
Sbjct: 235 N 235
>gi|456865061|gb|EMF83426.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira weilii
serovar Topaz str. LT2116]
Length = 249
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 117/213 (54%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER IK+ + + E+ +YE +G GG++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGDLEGVVYEECLYECFGSGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F R V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFERKGVIVLESSQIGEDELVDLA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ AGAEDVI NE + Y+V++T D+Y + L E G+ E +
Sbjct: 157 VGAGAEDVI----NEGEV--------YRVITTPDDYESVLHALNEKGLKSEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ D E E +LI +L DDV +V ++
Sbjct: 205 VSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|374298163|ref|YP_005048354.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
clariflavum DSM 19732]
gi|359827657|gb|AEV70430.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
clariflavum DSM 19732]
Length = 242
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 118/216 (54%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
V++GGP+P SN+ L V+ KAK ++P + + R IK+A+ E + E VYE YG GGV
Sbjct: 36 VRQGGPDPESNSKLRDVIAKAKAANMPNENIMRCIKKAAGEVDNTDYEEIVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
+++VE +TD R+ A VR GG + G V F F + V+ I K ++D L+
Sbjct: 96 AVIVEAMTDNRNRTAADVRHYFDKFGGNLGTTGCVSFMFDKKGVILIEKNGKINEDDLMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+ GAED TDE+ YY++++ ++++ + L G F E+
Sbjct: 156 EALEYGAEDF--------STDEE----YYEIITAPEDFSKVREGLENKGYEF-IKAEVEM 202
Query: 198 LPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
+P T ++ D + +EL +LI L +LDDV VY +
Sbjct: 203 VPQTMTKLTDPKQIELMDKLIEHLEDLDDVQNVYHN 238
>gi|300087333|ref|YP_003757855.1| hypothetical protein Dehly_0207 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527066|gb|ADJ25534.1| protein of unknown function DUF28 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 250
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 18/217 (8%)
Query: 19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ---EAFIEKVYEVYGY 75
+ K GGP+P N L ++KA++ +P D +ER IK+ S GQ E E E YG
Sbjct: 35 SAKDGGPDPAMNARLRLAVQKARDARMPSDNIERAIKKGS--GQLEGETLFELTLEGYGP 92
Query: 76 GGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQL 135
GGV+I+V+ ++D R++ VR + GG M + G V + F +VN+ + D D++
Sbjct: 93 GGVAILVQAVSDNRNRTIQEVRHLFTKSGGAMGEAGCVAWIFDPKGIVNVNAENRDTDEV 152
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
+DAGAEDV + D D Y +V++ + + + IP E ++G
Sbjct: 153 TLEVIDAGAEDV------KADGD------YLEVITAPEQLEAVRQAVEAKAIPIE-NSGL 199
Query: 196 ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
E+ P T +E+DD+ +L+ L +LDD VY++
Sbjct: 200 EMKPKTLVELDDDTAVQVLKLLTALEDLDDAQNVYSN 236
>gi|86142896|ref|ZP_01061318.1| hypothetical protein MED217_09637 [Leeuwenhoekiella blandensis
MED217]
gi|85830341|gb|EAQ48800.1| hypothetical protein MED217_09637 [Leeuwenhoekiella blandensis
MED217]
Length = 243
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK +++PKD +ER IKRAS
Sbjct: 13 MKRWSAMAKAFTRIGKDIVIAVKEGGPDPDSNSRLRAVIQNAKSVNMPKDNIERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K + E ++E Y G++I++E TD R+VA +R C G + GSV F F
Sbjct: 73 DKSLGDYKEVLFEGYAPHGIAILIETATDNNNRTVANIRSYFNKCNGNLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V E DED Y S + +
Sbjct: 133 HTCNFRINAEGVDAEELELELIDYGAEEVFE--------DEDGIIIYGPFGS----FGAL 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
L EAG +G E +P T + E E ++L+ K+ E DDV VY
Sbjct: 181 QAYLEEAGHEI-LSSGFERIPQVTKTLTPEEAEDVEKLLEKIEEDDDVQNVY 231
>gi|83647605|ref|YP_436040.1| hypothetical protein HCH_04926 [Hahella chejuensis KCTC 2396]
gi|119372143|sp|Q2SCK9.1|Y4926_HAHCH RecName: Full=Probable transcriptional regulatory protein HCH_04926
gi|83635648|gb|ABC31615.1| uncharacterized conserved protein [Hahella chejuensis KCTC 2396]
Length = 248
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 14/212 (6%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSI 80
K G P N L AV++KA +++ KD +E+ I+R + G ++ F E YE YG GGV++
Sbjct: 37 KNGALPEDNPRLRAVIDKALTVNMKKDTIEKAIQRGAGGGDDSNFDELTYEGYGPGGVAV 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
VEV+TD R+VA VR GG + GSV + F + V+ + D D+D +++ AL
Sbjct: 97 YVEVMTDNRNRTVAEVRHAFSKHGGNLGTDGSVAYLFSKTGVI-LFAPDVDEDAVMEAAL 155
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AGA+DVI N+D + E V ++++++ + L AG+ E+ + S ++P
Sbjct: 156 EAGAQDVI---ANDDGSVE--------VQTSAEDFMAVKDALMAAGLTPESADVS-MVPA 203
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +D E E +LI L +LDDV VY++
Sbjct: 204 TMAPLDVENGEKVMKLIEMLEDLDDVQNVYSN 235
>gi|28211819|ref|NP_782763.1| hypothetical protein CTC02215 [Clostridium tetani E88]
gi|33517010|sp|Q891Z5.1|Y2215_CLOTE RecName: Full=Probable transcriptional regulatory protein CTC_02215
gi|28204261|gb|AAO36700.1| glucose-1-phosphate adenylyltransferase [Clostridium tetani E88]
Length = 246
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 117/214 (54%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVS 79
K+GG NP +N+ L V+ KA+ ++P+D + R IK+ A E + E YE YG GV+
Sbjct: 37 KEGGSNPDTNSKLRDVIAKARANNMPQDTISRAIKKGAGELEGVNYEEMTYEGYGPNGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR-RARVVNIKFTDADKDQLLDI 138
VV LTD R+ VR GG + + G V + F+ + +++ + D D+D+++ +
Sbjct: 97 FVVSTLTDNKNRTAGNVRAAFSKHGGNLGETGCVGWMFQSKGQMIIERNEDMDEDEIMMV 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
ALDAGAED + +E +++++T +++ ++ KL G F + + ++
Sbjct: 157 ALDAGAEDF------------ESSEEVFEIITTPESFGEVREKLEAEGFEFISAEVT-MI 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TTIE+ E ++LI KL + DDV VY +
Sbjct: 204 PDTTIEISMERAAGLQKLIDKLEDDDDVQNVYHN 237
>gi|70732091|ref|YP_261847.1| hypothetical protein PFL_4766 [Pseudomonas protegens Pf-5]
gi|119372135|sp|Q4K7D6.1|Y4766_PSEF5 RecName: Full=Probable transcriptional regulatory protein PFL_4766
gi|68346390|gb|AAY93996.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
protegens Pf-5]
Length = 248
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R I R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPNSNPRLRLALDKALGANMSRDIIDRAIARG 73
Query: 58 S-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ G + +E YE YG GV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 TGAAGSDDVVELTYEGYGPNGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 175
F R I F + D+D L++ A++A A+DV+ NED + V ++ +
Sbjct: 134 FERKG--QITFAEGVDEDALMEAAMEADADDVVS---NEDGS--------IDVFTSFAGF 180
Query: 176 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG D +LP T+ E+D E E +LI L +LDDV VY++
Sbjct: 181 YGVRNALEAAGFT-AADAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|311742328|ref|ZP_07716137.1| YebC like protein [Aeromicrobium marinum DSM 15272]
gi|311313956|gb|EFQ83864.1| YebC like protein [Aeromicrobium marinum DSM 15272]
Length = 252
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 26/244 (10%)
Query: 2 QRKQSCI---RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I RG ++N+ + GGP+P N L ++KAK+ VP D ++R +
Sbjct: 11 KHKKAAIDAKRGKMFAKLIKNIEVAARMGGPDPDGNPTLYDAIQKAKKSSVPNDNIDRAV 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR G +A +I +YE YG GV+++VE LTD R+ VR + GG MADPGS
Sbjct: 71 KRGGGVGDDAVDYITIMYEGYGPNGVAMLVECLTDNRNRAAMEVRTAMTRNGGTMADPGS 130
Query: 113 VMFKFRRARVVNIKFTD----ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKV 168
V + F R V+ + +D +L LDAGAE+V D E ++V
Sbjct: 131 VSYMFARKGVIIVPAEQEGGATTEDDILLAVLDAGAEEV-----------NDHGES-FEV 178
Query: 169 VSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDA 228
+ + + + T L++AG+ +++ + S +P +EVD + +LI L + DDV
Sbjct: 179 ICEATDLVAVRTALQDAGLDYDSADAS-FVPSVNVEVDVDGATKVLKLIDALEDCDDVQN 237
Query: 229 VYTD 232
V+ +
Sbjct: 238 VFAN 241
>gi|161353729|ref|YP_706815.2| hypothetical protein RHA1_ro06891 [Rhodococcus jostii RHA1]
gi|119369542|sp|Q0S1C9.2|Y6891_RHOSR RecName: Full=Probable transcriptional regulatory protein
RHA1_ro06891
Length = 250
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKAFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG MADPGSV + F R V
Sbjct: 81 ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ D +D +L LDAGAE+V + DT +++VS + + + L
Sbjct: 141 VTLEKGDQSEDDVLMAVLDAGAEEVTDLG----DT--------FEIVSEPTDLVAVRSAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ ++ + VD + +L+ L E DDV VYT+
Sbjct: 189 QEAGIDYDSAE-ADFRASVEVPVDADGARKVFKLVDALEESDDVQNVYTN 237
>gi|397737379|ref|ZP_10504051.1| hypothetical protein JVH1_8657 [Rhodococcus sp. JVH1]
gi|396926818|gb|EJI94055.1| hypothetical protein JVH1_8657 [Rhodococcus sp. JVH1]
Length = 253
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 24 RGKAFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGG 83
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG MADPGSV + F R V
Sbjct: 84 ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGV 143
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ D +D +L LDAGAE+V + DT +++VS + + + L
Sbjct: 144 VTLEKGDQSEDDVLMAVLDAGAEEVTDLG----DT--------FEIVSEPTDLVAVRSAL 191
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ ++ + VD + +L+ L E DDV VYT+
Sbjct: 192 QEAGIDYDSAE-ADFRASVEVPVDADGARKVFKLVDALEESDDVQNVYTN 240
>gi|345888536|ref|ZP_08839616.1| hypothetical protein HMPREF0178_02390 [Bilophila sp. 4_1_30]
gi|345040610|gb|EGW44850.1| hypothetical protein HMPREF0178_02390 [Bilophila sp. 4_1_30]
Length = 248
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 115/216 (53%), Gaps = 22/216 (10%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA---FIEKVYEVYGYGGV 78
K G +P SN+ L A + AK +++PKD +E I++ + GQ+A IE YE YG GGV
Sbjct: 37 KNGGDPASNSRLRAAIAAAKSINLPKDKIEAAIRKGT--GQDAGGDIIEINYEGYGPGGV 94
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE TD R+VA +R ++ GG M + G V +KF R V+ +DQL++
Sbjct: 95 AVIVETATDNRNRTVAEIRHLMSKGGGSMGENGCVSWKFERKGVIQFSKEKYTEDQLMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL- 197
AL+AGA+D+ D+ D +++ + ++ + AG+ + +EL
Sbjct: 155 ALEAGADDL------RDEGD------VWEIQTAMADFNAVREAFEAAGLEMIS---AELN 199
Query: 198 -LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TT+EVD E I L + DDV VY+D
Sbjct: 200 QVPQTTMEVDLETARKLLRFIELLEDNDDVQNVYSD 235
>gi|121998989|ref|YP_001003776.1| hypothetical protein Hhal_2210 [Halorhodospira halophila SL1]
gi|166227683|sp|A1WZ62.1|Y2210_HALHL RecName: Full=Probable transcriptional regulatory protein Hhal_2210
gi|121590394|gb|ABM62974.1| protein of unknown function DUF28 [Halorhodospira halophila SL1]
Length = 247
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 118/211 (55%), Gaps = 14/211 (6%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIV 81
GGP+P N L L++A +++PKD + IK+ A + EA+ E YE YG GG +I+
Sbjct: 39 GGPDPEMNARLRLALDRAFAVNLPKDRADAAIKKGAGLEEAEAYEEIRYEGYGPGGSAIM 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
V+ +TD R+V+ VR GGKM SV + F+ R V + D DQ+L++AL+
Sbjct: 99 VDCMTDNRNRTVSEVRHAFSKHGGKMGTDNSVAYLFQE-RGVLVFAPGTDSDQVLEVALE 157
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGA+D++E N+D + E V++T + Y + L EAG+ E + ++ P
Sbjct: 158 AGADDLVE---NDDGSLE--------VLTTPEAYRGVRDALTEAGLEPEQADVTQ-RPDL 205
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T++++ + LI +L +LDDV VYT+
Sbjct: 206 TVQIEGDNAVSTARLIERLEDLDDVQHVYTN 236
>gi|405370927|ref|ZP_11026653.1| hypothetical protein YebC [Chondromyces apiculatus DSM 436]
gi|397089267|gb|EJJ20195.1| hypothetical protein YebC [Myxococcus sp. (contaminant ex DSM 436)]
Length = 249
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 116/211 (54%), Gaps = 14/211 (6%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIV 81
GG P+ N L L A+E ++PKD +ER IK+ + E E++ E YE YG GGV+I+
Sbjct: 39 GGGEPSGNARLRVALGLAREANIPKDTIERAIKKGTGELEGESYEEVTYEGYGPGGVAIL 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
VE LTD R+ A +R GG + G+V + F++ V+++K + DQL++ A+D
Sbjct: 99 VECLTDNRNRTAADMRSTFNAYGGNLGAEGAVAWMFQKKGVISVKHGPTE-DQLMEQAID 157
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDVI + D+ E R + +D +T + ++L+E G+P +P
Sbjct: 158 AGAEDVI---MLGDEGAEVR-------CAAADLHT-VGSRLQETGLPLGQQRWV-FIPQN 205
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ +D + + +L+ L E DDV V+ +
Sbjct: 206 TVALDMDTAKRLLKLLDALEENDDVQNVHGN 236
>gi|257455417|ref|ZP_05620652.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
gi|257447379|gb|EEV22387.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
Length = 249
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 122/217 (56%), Gaps = 22/217 (10%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
K+G P+P SN L A +EKA +++ KD V+R I+R + G ++++ YE YG GGV+
Sbjct: 37 KQGDPDPASNPRLRAAVEKANSVNMTKDTVKRAIERGAGGGDNDNMQEITYEGYGLGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD-KDQLLDI 138
++VE +TD + R+V VR GG + GSV + F + I F D +D ++++
Sbjct: 97 VIVETMTDNLNRTVGEVRHAFSKNGGNLGTSGSVAYMFSKRG--EITFDDVSLEDTIMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
AL+AGA D+ E++ D VV+ +N+ D+ L +AG+ ++DN +
Sbjct: 155 ALEAGATDI------ENNGDS------ITVVTEPENFGDVMDALEKAGL--KSDNAEVTM 200
Query: 198 LPITTIEVDD--EAMELNKELIAKLLELDDVDAVYTD 232
P T +V D +A ++ K +I L +LDDV VYT+
Sbjct: 201 SPSTMADVTDVEDAKKIMK-MIDMLEDLDDVQEVYTN 236
>gi|27376645|ref|NP_768174.1| hypothetical protein blr1534 [Bradyrhizobium japonicum USDA 110]
gi|33517014|sp|Q89U83.1|Y1534_BRAJA RecName: Full=Probable transcriptional regulatory protein blr1534
gi|27349786|dbj|BAC46799.1| blr1534 [Bradyrhizobium japonicum USDA 110]
Length = 248
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVIAARAENMPKDNIERAIKKALGSDGENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRTGIIEYDRSVASDDAVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV+ E +++ ++++ Y D+ L F + L+
Sbjct: 156 IEAGADDVVS------------GEGGHEIYASTEGYRDVAKALE---AKFGEPRKAALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 201 KPQNTVAVDDETGEKLLKLMDLLNEHDDVQNVYAN 235
>gi|333978128|ref|YP_004516073.1| hypothetical protein Desku_0663 [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821609|gb|AEG14272.1| UPF0082 protein yeeN [Desulfotomaculum kuznetsovii DSM 6115]
Length = 242
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 118/211 (55%), Gaps = 14/211 (6%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIV 81
GG +P +N L A +++AKE ++P + ++R I++ + E G + E +YE YG GGV+++
Sbjct: 39 GGGDPDANPRLKAAIQRAKEANIPNENIQRAIQKGTGELGAANYEELIYEGYGPGGVAVM 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
+E++TD R+ +R + GG + + G V + F + V+ ++ D+D+L+ AL+
Sbjct: 99 MEIMTDNRNRTAGEIRHLFSRHGGNLGEAGCVSWMFSKKGVIVVEKDGLDEDELMLTALE 158
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAED+ T+ED +++++ +++ + L E GIP + ++P +
Sbjct: 159 AGAEDM--------KTEEDE----FEIITAPEDFEKVRQVLVEKGIPI-AEAQVTMVPQS 205
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+++ + E L+ L + DD+ VY +
Sbjct: 206 TVKLAGQEAEQMMRLMEALEDHDDIQEVYAN 236
>gi|402848490|ref|ZP_10896747.1| hypothetical protein YebC [Rhodovulum sp. PH10]
gi|402501237|gb|EJW12892.1| hypothetical protein YebC [Rhodovulum sp. PH10]
Length = 248
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A+ E + E YE YG GV+
Sbjct: 36 AKLGTPDPAMNPRLRAAIIAARAENMPKDNIERAIKKAAGADTENYEEIRYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VEVLTD R+ + VR GG +A+ G+V F F R V+ A D +L+ A
Sbjct: 96 VIVEVLTDNRNRTASDVRSYFTKSGGNLAETGAVSFMFDRLGVIEYPPEIASADAMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV +DE+ +++ ++ + Y D+ L E F + L+
Sbjct: 156 IEAGADDVA--------SDEES----HEIFASQETYRDVAKVLEE---KFGEPRKAALVW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TI VDDEA E +LI L E DDV VY +
Sbjct: 201 KPQNTITVDDEAAEKLFKLIETLEEHDDVQNVYAN 235
>gi|262368435|ref|ZP_06061764.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262316113|gb|EEY97151.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 249
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 129/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG ++R + K GG + SN L AV+EKA +++ +D++ R I+R A
Sbjct: 16 KQDASRGKLFTKFIRELTTAAKLGGGDAASNPRLRAVVEKALSVNMTRDVINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV F F
Sbjct: 76 GEDNDDLKEITYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTNGSVAFLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +DQ++D+AL+AGAED+ + DED V++T +++ D
Sbjct: 136 KRG--EITFEDVSLEDQIMDVALEAGAEDI--------EVDEDE----ILVITTPESFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDVQNVYTN 236
>gi|219121619|ref|XP_002181160.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407146|gb|EEC47083.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 241
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 23/226 (10%)
Query: 11 WGRKSYLRNVKKGG-PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV 69
+G+K + VK+GG P+P +N LA V++ AK VP D + R IK+ASE F E
Sbjct: 26 YGKK-LIMAVKQGGSPDPKANKALADVIKGAKANSVPVDNINRAIKKASEGNVGDFKEAT 84
Query: 70 YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD 129
+E YG+GGVS+++ VLTD R+ + VR V GK+A+ GSV+F + R ++ ++ D
Sbjct: 85 FEAYGFGGVSLIINVLTDNNNRATSDVRTAVNKRDGKIAESGSVLFMYDRKGMIEVQ-QD 143
Query: 130 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT--TKLREAGI 187
D++ +L+ A++AG +D ++ D V T+ YTD + + + EA
Sbjct: 144 LDEEAVLEAAIEAGCDDY---ELSAGD-----------VEGTTILYTDPSEVSMMFEALK 189
Query: 188 PFETDNGSEL-LPITT---IEVDDEAMELNKELIAKLLELDDVDAV 229
D G+++ L T +E DE + N ++I L +LDDVD+V
Sbjct: 190 SLGCDAGAKMSLTYVTKAPVECSDEDFDKNMDIIEALEDLDDVDSV 235
>gi|317154309|ref|YP_004122357.1| hypothetical protein Daes_2613 [Desulfovibrio aespoeensis Aspo-2]
gi|316944560|gb|ADU63611.1| protein of unknown function DUF28 [Desulfovibrio aespoeensis
Aspo-2]
Length = 247
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 24/223 (10%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K + K GG NP N+ L ++KAK++++PKD +E IK+ + E FIE +YE
Sbjct: 30 KDIILAAKAGGGNPEDNSGLRLAIQKAKQVNLPKDRIENAIKKGTGELAGGDFIEVMYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTD 129
YG GGV+++V+ TD R+VA +R GG MA+ G+V + F + V+ KFT+
Sbjct: 90 YGPGGVALLVDAATDNRNRTVAEIRHTFSKHGGSMAEAGAVSYMFSKKGVIIFDKEKFTE 149
Query: 130 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
DQL+++ L+AGAED++ DD D V + ++ + +AG+ F
Sbjct: 150 ---DQLMEVGLEAGAEDIM------DDGDS------LIVHTAPGDFMAVQQAFTDAGMAF 194
Query: 190 ETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
E+ +E+ +P I VD L L + DDV VY
Sbjct: 195 ES---AEVGRVPENLIPVDVSTGRKTMNLFDALEDNDDVQKVY 234
>gi|29375262|ref|NP_814415.1| hypothetical protein EF0663 [Enterococcus faecalis V583]
gi|227554777|ref|ZP_03984824.1| protein of hypothetical function DUF28 [Enterococcus faecalis HH22]
gi|256964553|ref|ZP_05568724.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257077537|ref|ZP_05571898.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|294780447|ref|ZP_06745812.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis PC1.1]
gi|422713602|ref|ZP_16770351.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309A]
gi|422716344|ref|ZP_16773051.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309B]
gi|422736378|ref|ZP_16792642.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1341]
gi|33516992|sp|Q838A9.1|Y663_ENTFA RecName: Full=Probable transcriptional regulatory protein EF_0663
gi|29342721|gb|AAO80486.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
V583]
gi|227176076|gb|EEI57048.1| protein of hypothetical function DUF28 [Enterococcus faecalis HH22]
gi|256955049|gb|EEU71681.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256985567|gb|EEU72869.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|294452446|gb|EFG20883.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis PC1.1]
gi|315166881|gb|EFU10898.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1341]
gi|315575399|gb|EFU87590.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309B]
gi|315581457|gb|EFU93648.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309A]
Length = 242
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GGP+P N L ++KAK ++P D + R IK+AS G+ E + E YE YG GGV
Sbjct: 36 AKAGGPDPAMNPALRLAVDKAKSANMPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLL 136
+++V LTD R+ VR GG + + GSV + F R + IK D ++D +L
Sbjct: 96 AVLVHALTDNRNRTATNVRVAFTRNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ L+AG ED+ P +++ + +++T + L +AG +
Sbjct: 156 EVVLEAGGEDIETSP------------EVFEIYTAPEDFTAVRDALEQAGYSLAQAELT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T + ++DE + L+ KL + DDV V+T
Sbjct: 203 MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
>gi|407983397|ref|ZP_11164049.1| hypothetical protein C731_2008 [Mycobacterium hassiacum DSM 44199]
gi|407375024|gb|EKF23988.1| hypothetical protein C731_2008 [Mycobacterium hassiacum DSM 44199]
Length = 251
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 106/212 (50%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GG +P N L ++KAK+ VP D +ER KR S E G + YE YG GV++
Sbjct: 39 GGGDPAGNPTLYDAIQKAKKASVPNDNIERARKRGSGEEAGGADYQPVTYEGYGPNGVAV 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
++E LTD R+ VR + GG MADPGSV + F R VV ++ + +L L
Sbjct: 99 LIECLTDNRNRAAGEVRVAMTRNGGSMADPGSVAYLFSRKGVVTLEKNGLTEGDVLAAVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAEDV D D +++ + + T L++AGI +++ P
Sbjct: 159 DAGAEDV------RDLGDS------FQITCEPGDLVAVRTALQDAGIDYDSAEAG-FEPS 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ VD E +L+ L +LDDV VYT+
Sbjct: 206 VTVPVDLEGARKILKLVDALEDLDDVQDVYTN 237
>gi|334340937|ref|YP_004545917.1| hypothetical protein [Desulfotomaculum ruminis DSM 2154]
gi|334092291|gb|AEG60631.1| protein of unknown function DUF28 [Desulfotomaculum ruminis DSM
2154]
Length = 243
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 117/216 (54%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
+ GGP+P N L +EKA+E ++P D ++R I++ + G+ A F E YE YG GGV
Sbjct: 36 ARNGGPDPAGNRRLKTAVEKAREANIPNDNIQRAIQKGAGGGEGANFEEFAYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
++++ V TD R+ A VR ++ GG + + G V MFK + +++ +D L+
Sbjct: 96 AVLIYVATDNRNRTAAEVRHILSKQGGNLGESGCVNWMFKEKGILILDRSQIKMSEDDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
AL+AGAED+ T+ED +++ + +++ + L++ GIP D
Sbjct: 156 LAALEAGAEDI--------KTEEDS----FEITTAPEDFEKVCEALKQQGIPL-ADAELS 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ T +++ + E ++I L + DDV AVYT+
Sbjct: 203 MVAQTMVKLQGDEAEKMVKIIDLLEDNDDVQAVYTN 238
>gi|334337150|ref|YP_004542302.1| hypothetical protein Isova_1656 [Isoptericola variabilis 225]
gi|334107518|gb|AEG44408.1| UPF0082 protein yeeN [Isoptericola variabilis 225]
Length = 252
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 114/215 (53%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER +KR S +G +A + +YE YG G+
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERAVKRGSGEGADAVDYQTIMYEGYGNNGI 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+++VE LTD R+ A VR GG +ADPGSV + F R +V + +D +D ++
Sbjct: 97 AVLVECLTDNKNRAAAEVRTAFSRNGGSLADPGSVSYLFSRKGLVVVPKSDGVTEDDVML 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGAE+V TDE +V+ + + + T ++EAGI +++ +
Sbjct: 157 AALDAGAEEV---------TDEGEV---IEVLCEATDLVAVRTAIQEAGIEYDSAD-VIW 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +EVD E LI L + DDV VY +
Sbjct: 204 HPSMEVEVDVEGARKITRLIDALEDSDDVQNVYAN 238
>gi|119962527|ref|YP_948039.1| hypothetical protein AAur_2300 [Arthrobacter aurescens TC1]
gi|403527507|ref|YP_006662394.1| hypothetical protein ARUE_c24550 [Arthrobacter sp. Rue61a]
gi|166227709|sp|A1R727.1|Y2300_ARTAT RecName: Full=Probable transcriptional regulatory protein AAur_2300
gi|119949386|gb|ABM08297.1| putative Domain of unknown function DUF28 [Arthrobacter aurescens
TC1]
gi|403229934|gb|AFR29356.1| hypothetical protein ARUE_c24550 [Arthrobacter sp. Rue61a]
Length = 251
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I G KS+ + +K GGP+ N L + KAK+ VP D ++R I
Sbjct: 11 KHKKAIIDGRRAKSFAKLIKNIEVAARMGGPDLAGNPGLELAVTKAKKTSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + E +YE G G ++++E LTD R+ + VR + GG +ADPGS
Sbjct: 71 KRGAGLTGEVVDYTEIMYEARGPQGSALLIECLTDNKNRAASEVRLAISRNGGTIADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R VV + +D +L L+AGAE+V D+ E+ +++ S
Sbjct: 131 VSYLFARKGVVVLPKNGLSEDDILMAVLEAGAEEV-------KDSGEN-----WEIHSEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ I L+EAGI +ETD +E +P +++D + + +L+ L +LDDV VY++
Sbjct: 179 SDLQAIRDALKEAGIDYETDE-AEFVPSMQVDLDVDGAKKFMKLVDALEDLDDVQNVYSN 237
>gi|384103686|ref|ZP_10004652.1| hypothetical protein W59_19998 [Rhodococcus imtechensis RKJ300]
gi|419965690|ref|ZP_14481630.1| hypothetical protein WSS_A26245 [Rhodococcus opacus M213]
gi|432342657|ref|ZP_19591903.1| hypothetical protein Rwratislav_36414 [Rhodococcus wratislaviensis
IFP 2016]
gi|383838756|gb|EID78124.1| hypothetical protein W59_19998 [Rhodococcus imtechensis RKJ300]
gi|414568883|gb|EKT79636.1| hypothetical protein WSS_A26245 [Rhodococcus opacus M213]
gi|430772316|gb|ELB88098.1| hypothetical protein Rwratislav_36414 [Rhodococcus wratislaviensis
IFP 2016]
Length = 250
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKAFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG MADPGSV + F R V
Sbjct: 81 ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ D +D +L LDAGAE+V + DT +++VS + + + L
Sbjct: 141 VTLEKGDQTEDDVLMAVLDAGAEEVTDLG----DT--------FEIVSEPTDLVAVRSAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ ++ + VD + +L+ L E DDV VYT+
Sbjct: 189 QEAGIDYDSAE-ADFRASVEVPVDADGARKVFKLVDALEESDDVQNVYTN 237
>gi|379704912|ref|YP_005203371.1| YebC/PmpR family DNA-binding regulatory protein [Streptococcus
infantarius subsp. infantarius CJ18]
gi|374681611|gb|AEZ61900.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 241
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K GG +P+ N L VL+KA+ ++PKD + R IK+A++ G + E YE YG GGV
Sbjct: 36 AKAGGGDPSMNASLRMVLDKARAANMPKDNINRAIKKATDVGDTTNYDEITYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V LTD R+ A + + GG M GSV + F R V++ + D D+D +L
Sbjct: 96 AILVHTLTDNKKRTDANMHTIFTRNGGNMGSTGSVAYMFERKGYIVIDRENLDLDEDSIL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ LDAGAED+ T +D Y++ + S + + L+ I F S
Sbjct: 156 ELILDAGAEDL--------KTSDDA----YEIFTESKEFPAVKEALQAQNIEFAQAQLS- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P I +D E ++ + L+ KL + DDV VYT+
Sbjct: 203 MIPQNYISLDAEQADILETLVDKLEDDDDVQDVYTN 238
>gi|226366279|ref|YP_002784062.1| hypothetical protein ROP_68700 [Rhodococcus opacus B4]
gi|254806575|sp|C1B4C8.1|Y6870_RHOOB RecName: Full=Probable transcriptional regulatory protein ROP_68700
gi|226244769|dbj|BAH55117.1| hypothetical protein [Rhodococcus opacus B4]
Length = 250
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKAFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG MADPGSV + F R V
Sbjct: 81 ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ D +D +L LDAGAE+V D E +++VS + + + L
Sbjct: 141 VTLEKGDQTEDDVLMAVLDAGAEEVT-----------DLGET-FEIVSEPTDLVAVRSAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ ++ + VD + +L+ L E DDV VYT+
Sbjct: 189 QEAGIDYDSAE-ADFRASVEVPVDADGARKVFKLVDALEESDDVQNVYTN 237
>gi|398888020|ref|ZP_10642550.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM55]
gi|398912067|ref|ZP_10655815.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM49]
gi|426411197|ref|YP_007031296.1| hypothetical protein PputUW4_04299 [Pseudomonas sp. UW4]
gi|398182820|gb|EJM70322.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM49]
gi|398191564|gb|EJM78752.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM55]
gi|426269414|gb|AFY21491.1| hypothetical protein PputUW4_04299 [Pseudomonas sp. UW4]
Length = 248
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKG-QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 TGAADTDDVVELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L++ A++A A+DV+ NED + V ++ +
Sbjct: 134 FERKGQISFA-AGVDEDALMEAAMEADADDVV---TNEDGS--------IDVFTSFAGFY 181
Query: 177 DITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG F+ D+ +LP T+ E+D E E +LI L +LDDV VY++
Sbjct: 182 SVRNALEAAG--FKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|160902273|ref|YP_001567854.1| hypothetical protein Pmob_0807 [Petrotoga mobilis SJ95]
gi|189040610|sp|A9BHC2.1|Y807_PETMO RecName: Full=Probable transcriptional regulatory protein Pmob_0807
gi|160359917|gb|ABX31531.1| protein of unknown function DUF28 [Petrotoga mobilis SJ95]
Length = 251
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 120/213 (56%), Gaps = 16/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
++GG +P SN L +E AK ++PKD +E IK+ + + + + ++ YE YG GGV
Sbjct: 36 AREGGGDPESNPRLRTAVENAKAANMPKDKIESAIKKGTGELEGEELTEIMYEAYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
++++ V+TD R+ VR V+ GG +A+ GSV + F R ++ I + D D+L+
Sbjct: 96 ALLISVVTDNKNRTAQEVRHVLSKWGGALAESGSVSWNFERKGLITIPKEEVEDIDELML 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A++AGAED+ +++TD ++++ +N T + L+EAG +
Sbjct: 156 LAVEAGAEDL------DENTDP------LEIITAPENLTQVRNALKEAG--YTVSEKLTF 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
LP TT+++ DE E +L+ L ++DDV V+
Sbjct: 202 LPKTTVKLSDEDAEKLLKLLNALDDMDDVQEVF 234
>gi|378549170|ref|ZP_09824386.1| hypothetical protein CCH26_03755 [Citricoccus sp. CH26A]
Length = 251
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I K++ + VK GGP+ N L + KAK+ VP D ++R I
Sbjct: 11 KHKKAVIDARRAKAFAKYVKGIEVAARVGGPDLDGNPALELAVTKAKKQSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + E +YEV G G +++VE LTD R+ A VR V GG MAD GS
Sbjct: 71 KRGAGLTGEVIDYTEIIYEVRGPQGSALMVECLTDNKNRAAADVRTAVTRNGGTMADAGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V F F R VV + +D++L LDAGAE+V+ ++ ++V+
Sbjct: 131 VAFLFNRTGVVRLPAEGTTEDEVLMAVLDAGAEEVV------------KSGDSFEVLCDP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + +T L AGI ++TD E + +++D + + L L +LDDV VY++
Sbjct: 179 SDMSAVTAALDGAGIEYDTDE-MEFVATMKVDLDAKGAKTFLHLEEALEDLDDVQGVYSN 237
>gi|397689746|ref|YP_006527000.1| Transcriptional regulator [Melioribacter roseus P3M]
gi|395811238|gb|AFN73987.1| Transcriptional regulator [Melioribacter roseus P3M]
Length = 243
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 119/214 (55%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
++GG +P N L ++ AK ++P D +ER IK+A+ + + A + E VYE YG GG++
Sbjct: 37 RQGGGDPEGNPRLRLAIDNAKAANMPADNIERAIKKATGELEGATYYEVVYEGYGPGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE TD R+VA VR + GG + + SV + F R ++ +K +D++++I
Sbjct: 97 ILVEAATDNKNRTVAEVRHIFSKNGGSLGESNSVAWMFERKGIITVKRDGMSEDEMMEII 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELL 198
+DAGA+D+ T+ED +++VV+T +++ + L + G+ E N S + +
Sbjct: 157 IDAGADDL--------QTEED----FFEVVTTLESFEPVRRALVDKGLQVE--NASLQWI 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ V E E +LI L + DDV V+T+
Sbjct: 203 AKNQVAVKGEEAEKVMKLIESLEDNDDVQNVFTN 236
>gi|399527724|ref|ZP_10767411.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
ICM39]
gi|398361660|gb|EJN45402.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
ICM39]
Length = 253
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 118/217 (54%), Gaps = 18/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG GG
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKRGSGAEAGGANYETIMYEGYGPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R +V + D D++ ++
Sbjct: 96 VAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVAYLFSRRGIVEVPAADGVDEESIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
LDAGAE+V ED E + V S + + T L++AGI +++ +
Sbjct: 156 MAVLDAGAEEV-----------EDAGELFI-VESDPKDVVAVRTALQDAGIDYDSAE-VQ 202
Query: 197 LLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
+ T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 203 FVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|424852301|ref|ZP_18276698.1| hypothetical protein OPAG_03838 [Rhodococcus opacus PD630]
gi|356666966|gb|EHI47037.1| hypothetical protein OPAG_03838 [Rhodococcus opacus PD630]
Length = 253
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 24 RGKAFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGG 83
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG MADPGSV + F R V
Sbjct: 84 ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGV 143
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ D +D +L LDAGAE+V + DT +++VS + + + L
Sbjct: 144 VTLEKGDQTEDDVLMAVLDAGAEEVTDLG----DT--------FEIVSEPTDLVAVRSAL 191
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ ++ + VD + +L+ L E DDV VYT+
Sbjct: 192 QEAGIDYDSAE-ADFRASVEVPVDADGARKVFKLVDALEESDDVQNVYTN 240
>gi|395244749|ref|ZP_10421703.1| UPF0082 protein LBGG_00571 [Lactobacillus hominis CRBIP 24.179]
gi|394482955|emb|CCI82711.1| UPF0082 protein LBGG_00571 [Lactobacillus hominis CRBIP 24.179]
Length = 243
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P+ N L V++KA+ ++PK +ER IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPSGNPSLRLVMDKARAANMPKTNIERAIKKAEGNSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
++VE LTD R+ + VR GG + GSV + F R + I TDAD+DQ+L
Sbjct: 96 VLVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRRGYIAIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ + ++ +++ + +T + L +AG D +
Sbjct: 156 DVMDAGGDDL------------ETSDEAFEIYTDPKQFTAVRDALEKAGYKI-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E + LI L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFEHLIDALEDNDDVSNVYT 236
>gi|359776291|ref|ZP_09279606.1| hypothetical protein ARGLB_039_00200 [Arthrobacter globiformis NBRC
12137]
gi|359306310|dbj|GAB13435.1| hypothetical protein ARGLB_039_00200 [Arthrobacter globiformis NBRC
12137]
Length = 251
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I KS+ + +K GGP+ N L + KAK+ VP D ++R I
Sbjct: 11 KHKKAIIDSRRAKSFAKLIKNIEVAARMGGPDLAGNPGLELAVTKAKKTSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + E +YE G G ++++E LTD R+ + VR + GG +ADPGS
Sbjct: 71 KRGAGLTGEVVDYTEIMYECRGPQGSALLIECLTDNKNRAASEVRLAISRNGGTIADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R VV + D +D +L LDAGAE+V +D+ D +++ S
Sbjct: 131 VSYLFTRKGVVTLPKNDLTEDDVLMAVLDAGAEEV------KDNGD------TFEIHSDP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + L+EAGI ++TD +E +P + +D +A + +L+ L +LDDV VY++
Sbjct: 179 KDLQAVRDALKEAGIDYDTDE-AEFVPSMEVPLDLDAAKKFMKLVDALEDLDDVQNVYSN 237
>gi|53804482|ref|YP_113684.1| hypothetical protein MCA1220 [Methylococcus capsulatus str. Bath]
gi|67462035|sp|Q609L3.1|Y1220_METCA RecName: Full=Probable transcriptional regulatory protein MCA1220
gi|53758243|gb|AAU92534.1| conserved hypothetical protein TIGR01033 [Methylococcus capsulatus
str. Bath]
Length = 248
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 117/213 (54%), Gaps = 14/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
+ GGP+P +N L ++KA ++ KD +ER IK+ S E+V YE YG GG++
Sbjct: 37 RTGGPDPGNNPRLRTAIDKALVANMSKDTIERAIKKGSGAADGDNYEEVRYEGYGPGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++V+ LTD R+VA VR GG + GSV + F + VV+ D +D++++ A
Sbjct: 97 VLVDCLTDNRNRTVAEVRHAFSKAGGNLGTDGSVAYLFSKTGVVSFS-ADLGEDRVMEPA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGA+DV+ VNED + V++ D + + L AG+ E+ + +
Sbjct: 156 LDAGADDVV---VNEDGS--------VDVLTAPDQFEAVRDALEAAGLTPESAEVT-MRA 203
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T++++D E E L+ +L +LDDV VY++
Sbjct: 204 STSVKLDKEDAEKMIRLLERLEDLDDVQNVYSN 236
>gi|398931387|ref|ZP_10665160.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM48]
gi|398163669|gb|EJM51822.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM48]
Length = 248
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 22/238 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKG-QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 TGAADTDDVVELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 175
F R I F D+D L++ A++A A+DV+ NED + V ++ +
Sbjct: 134 FERKG--QISFAQGMDEDALMEAAMEADADDVV---TNEDGS--------IDVFTSFAGF 180
Query: 176 TDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG F+ D+ +LP T+ E+D E E +LI L +LDDV VY++
Sbjct: 181 YSVRNALEAAG--FKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|335036736|ref|ZP_08530059.1| hypothetical protein AGRO_4067 [Agrobacterium sp. ATCC 31749]
gi|333791884|gb|EGL63258.1| hypothetical protein AGRO_4067 [Agrobacterium sp. ATCC 31749]
Length = 248
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKTGMPDPNMNARLRLAIQNAKAQSMPKDNIERAIKKASGADSENYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVE LTD R+ + VR + GG + + GSV F F R + K D D++++ A
Sbjct: 96 VVVEALTDNRNRTASNVRSIFTKAGGALGETGSVSFSFDRVGEITYKAEVGDADKIMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV + +E + ++ + +++ L G+ E ++ +
Sbjct: 156 IEAGADDV------------ESSEDGHTIICGFEAMNEVSKALE--GVLGEAESVKAIWK 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD+E + +LI L + DDV VY++
Sbjct: 202 PQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|170781146|ref|YP_001709478.1| hypothetical protein CMS_0715 [Clavibacter michiganensis subsp.
sepedonicus]
gi|189040590|sp|B0REB7.1|Y715_CLAMS RecName: Full=Probable transcriptional regulatory protein CMS0715
gi|169155714|emb|CAQ00835.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 255
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 120/242 (49%), Gaps = 23/242 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I KS+ + +K GG + + N L ++KAK+ VP D ++R +
Sbjct: 11 KHKKAIIDSRRAKSFAKLIKNIEVAAKIGGADMSGNPTLVDAVQKAKKTSVPNDNIDRAV 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + +YE Y GV+++VE LTD R+ A VR + GG MADPGS
Sbjct: 71 KRGAGLLGEVVDYQTIMYEGYAANGVAMLVECLTDNKNRAAAEVRTAMSRNGGTMADPGS 130
Query: 113 VMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 171
V + F R V+ + DA +D +L LDAGAEDV D E +
Sbjct: 131 VAYNFHRKGVIAVPHADAPTEDDVLAAVLDAGAEDVT-----------DHGEVFEIRCEP 179
Query: 172 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
SD + L+EAGI +++ + E +P +EVD E +L+ + +LDDV +Y
Sbjct: 180 SD-MVGVRQALQEAGIDYDSAD-VEFVPQVKVEVDLETARKVNKLVDAMEDLDDVQNIYV 237
Query: 232 DQ 233
+
Sbjct: 238 NS 239
>gi|333991022|ref|YP_004523636.1| hypothetical protein JDM601_2382 [Mycobacterium sp. JDM601]
gi|333486990|gb|AEF36382.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length = 251
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I K++ R +K GG +P+ N L ++KAK+ VP D +ER
Sbjct: 11 KHKKAVIDARRGKNFARLIKNIEVAARVGGGDPSGNPTLYDAIQKAKKNSVPNDNIERAR 70
Query: 55 KRAS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E G + YE YG GV++++E LTD R+ + VR + GG MADPGS
Sbjct: 71 KRGAGEEAGGADYQTITYEGYGPNGVAVLIECLTDNRNRAASEVRVAMTRNGGTMADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R V ++ +D +L LDAGAEDV +D E ++V+S
Sbjct: 131 VAYLFSRKGTVTLEKNGLTEDDVLVAVLDAGAEDV-------NDLGES-----FEVISEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + T L +AGI +++ S P ++ VD E +L+ L + DDV V+T+
Sbjct: 179 GDLVAVRTALVDAGIDYDSAEAS-FQPSVSVPVDVEGARKVFKLVEALEDSDDVQNVWTN 237
>gi|429758846|ref|ZP_19291359.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 181 str. F0379]
gi|429173060|gb|EKY14597.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
oral taxon 181 str. F0379]
Length = 253
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 116/217 (53%), Gaps = 18/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLFDAIQKAKKNSVPADNIDRAVKRGSGAEAGGANYETIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R V+ + D D+D ++
Sbjct: 96 VAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVAYLFSRRGVIEVPAADGVDEDSIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ LDAGAE+V ED E + SD + L+EAGI +++ +
Sbjct: 156 EAVLDAGAEEV-----------EDLGEGFVIECEPSD-VVAVRKALQEAGIDYDSAE-VQ 202
Query: 197 LLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
+ T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 203 FVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|402311569|ref|ZP_10830510.1| DNA-binding regulatory protein, YebC/PmpR family [Lachnospiraceae
bacterium ICM7]
gi|404482378|ref|ZP_11017605.1| YebC/PmpR family DNA-binding regulatory protein [Clostridiales
bacterium OBRC5-5]
gi|400371741|gb|EJP24691.1| DNA-binding regulatory protein, YebC/PmpR family [Lachnospiraceae
bacterium ICM7]
gi|404344539|gb|EJZ70896.1| YebC/PmpR family DNA-binding regulatory protein [Clostridiales
bacterium OBRC5-5]
Length = 242
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK +VP D +ER IK+A+ + + + YE YG GV
Sbjct: 36 VKEGGPDPNNNSRLRDVIAKAKANNVPNDTIERGIKKAAGDVNSVNYEQNTYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARV-VNIKFTDADKDQLL 136
+I+VE LTD R+ A VR GG + PG V F F +R ++ ++ + D D D+L+
Sbjct: 96 AIIVETLTDNKNRTAANVRAAFTKGGGNIGTPGCVSFMFDKRGQILIDKEECDMDADELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
ALD GAED DE E Y++++ +N++ + L + G+P +
Sbjct: 156 MAALDLGAEDF---------NDE---EDSYEILTDPENFSAVREGLEKLGVPMANAEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVY 230
++P + + DE I LL+ DDV VY
Sbjct: 203 MIPQNWVTLSDEEDIKKMNRILDLLDAEDDVQNVY 237
>gi|419718294|ref|ZP_14245618.1| DNA-binding regulatory protein, YebC/PmpR family
[Lachnoanaerobaculum saburreum F0468]
gi|383305510|gb|EIC96871.1| DNA-binding regulatory protein, YebC/PmpR family
[Lachnoanaerobaculum saburreum F0468]
Length = 242
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK +VP D +ER IK+A+ + + + YE YG GV
Sbjct: 36 VKEGGPDPNNNSKLRDVIAKAKANNVPNDTIERGIKKAAGDINSVNYEQNTYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+VE LTD R+ A VR GG + G V F F + +++ + D D D+L+
Sbjct: 96 AIIVETLTDNKNRTAANVRAAFTKGGGNIGTQGCVSFMFDKKGQIIIDKEECDMDSDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
ALD GAED E E+D+ Y++++ DN++ + L + GIP D
Sbjct: 156 MTALDLGAEDFSE----EEDS--------YEILTDPDNFSVVREGLEKLGIPM-ADAEIT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVY 230
++P + + DE I LL+ DDV VY
Sbjct: 203 MIPQNWVTLSDEEDIKKMNRILDLLDAEDDVQNVY 237
>gi|220912788|ref|YP_002488097.1| hypothetical protein Achl_2034 [Arthrobacter chlorophenolicus A6]
gi|254801527|sp|B8H9D9.1|Y2034_ARTCA RecName: Full=Probable transcriptional regulatory protein Achl_2034
gi|219859666|gb|ACL40008.1| protein of unknown function DUF28 [Arthrobacter chlorophenolicus
A6]
Length = 251
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I KS+ + +K GGP+ N L + KAK+ VP D ++R I
Sbjct: 11 KHKKAIIDSRRAKSFAKLIKNIEVAARMGGPDLAGNPGLELAVTKAKKTSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + E +YE G G ++++E LTD R+ + VR + GG +ADPGS
Sbjct: 71 KRGAGLTGEVVDYTEIMYEARGPQGSALLIECLTDNKNRAASEVRLAISRNGGTIADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R VVN+ +D +L LDAGAE+V +D E +++ S
Sbjct: 131 VSYLFNRKGVVNLPKNGLGEDDVLMAVLDAGAEEV-----------KDNGES-FEIHSEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ I L++AGI ++TD E +P +E+D + +L L ELDDV VY++
Sbjct: 179 GDLPAIREALKDAGIEYDTDE-VEFVPSMQVELDVDGARKFMKLADALEELDDVQNVYSN 237
>gi|429766217|ref|ZP_19298491.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
celatum DSM 1785]
gi|429185197|gb|EKY26186.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
celatum DSM 1785]
Length = 246
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 13/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK GGP+P +N L + KAK ++P D V+R+IK+AS E G + VYE YG GV
Sbjct: 36 VKNGGPDPDNNPKLRDAIAKAKAANMPNDTVQRSIKKASGELGAVDYERIVYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ LTD RS VR GG M G V F F+ + I+ D D+++L+ +
Sbjct: 96 AVIVDTLTDNKNRSAGNVRSAFTKGGGNMGTTGCVGFMFQEKGEIVIEKGDLDEEELMMM 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
ALDAGAED ++DE E + + + D++ + L G+ F + +++
Sbjct: 156 ALDAGAEDF--------NSDE---EEVFIITTEPDDFGTVREALEAEGLEF-LEAAVKMI 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T E+D++A + ++++ L + DDV VY +
Sbjct: 204 PDTYTEIDEDAAKKFQKMLDLLEDDDDVQEVYHN 237
>gi|399926282|ref|ZP_10783640.1| hypothetical protein MinjM_04575 [Myroides injenensis M09-0166]
Length = 238
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 22/218 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGPNP SN+ L AV++ AK ++PKD VER IKRA++K E + E ++E YG G++
Sbjct: 34 VKEGGPNPESNSRLRAVIQNAKAANMPKDNVERAIKRATDKDTENYKEVIFEGYGPHGIA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKD------ 133
++E TD R+VA +R C G + GSV F F I F D ++D
Sbjct: 94 FLIECATDNNNRTVANIRSYFNKCNGTLGTSGSVEFMFDHTCNFRIPF-DPNRDLEEFEL 152
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+L+D +D + ED+ E + + +++ I +L GI +
Sbjct: 153 ELIDFGIDE---------IFEDEDGEG-----VMIYAPFESFGAIQKELESRGIEI-LSS 197
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
G + +P T E+ +E +L+ K+ E DDV +V+T
Sbjct: 198 GFDRIPQVTKELSEEEQADVDKLLEKIEEDDDVQSVFT 235
>gi|417003448|ref|ZP_11942511.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerococcus
prevotii ACS-065-V-Col13]
gi|325478640|gb|EGC81752.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 240
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 23/225 (10%)
Query: 16 YLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVY 70
+ RN+ K+GG NP N L +EKAK ++P D ++R IK+A+ + + F +Y
Sbjct: 28 HARNITVAAKEGGVNPDYNPALKTAIEKAKADNMPNDNIDRAIKKAAGDDASDNFERIIY 87
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFT 128
E YG GGV+I+V+ LTD R+ VR GG + GSVMF F R +VN ++
Sbjct: 88 EGYGPGGVAIIVDCLTDNKNRTAPDVRHAFDKNGGNLGTDGSVMFMFDRKGDIIVNSEYK 147
Query: 129 DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP 188
D D+ + AL+AG EDV +D E Y++ ++ + D L+EAG
Sbjct: 148 DF--DEFMMDALEAGCEDV-----------KDMGE-YFEAITDVQAFNDANDNLKEAGYK 193
Query: 189 FETDNGSELLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 232
E+ + S L I+VDDE + +LI L + DDV VY++
Sbjct: 194 VESADIS-YLAQNLIKVDDEDQKSKLTKLIDTLEDNDDVQEVYSN 237
>gi|293192648|ref|ZP_06609602.1| protein YebC [Actinomyces odontolyticus F0309]
gi|292820155|gb|EFF79152.1| protein YebC [Actinomyces odontolyticus F0309]
Length = 253
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 118/217 (54%), Gaps = 18/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG GG
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKRGSGAEAGGANYETIMYEGYGPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R +V + D D++ ++
Sbjct: 96 VAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVSYLFSRRGIVEVPAADGVDEESIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
LDAGAE+V ED E + V S + + T L++AGI +++ +
Sbjct: 156 MAVLDAGAEEV-----------EDAGELFI-VESDPKDVVAVRTALQDAGIDYDSAE-VQ 202
Query: 197 LLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
+ T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 203 FVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|227517625|ref|ZP_03947674.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX0104]
gi|229546489|ref|ZP_04435214.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX1322]
gi|229548603|ref|ZP_04437328.1| protein of hypothetical function DUF28 [Enterococcus faecalis ATCC
29200]
gi|256617545|ref|ZP_05474391.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256761434|ref|ZP_05502014.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256854478|ref|ZP_05559842.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256959795|ref|ZP_05563966.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|257080904|ref|ZP_05575265.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257083593|ref|ZP_05577954.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086018|ref|ZP_05580379.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089091|ref|ZP_05583452.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415233|ref|ZP_05592227.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257418279|ref|ZP_05595273.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257420921|ref|ZP_05597911.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293384983|ref|ZP_06630817.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
R712]
gi|293389253|ref|ZP_06633715.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
S613]
gi|307277053|ref|ZP_07558158.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX2134]
gi|307289644|ref|ZP_07569588.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0109]
gi|312900251|ref|ZP_07759563.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0470]
gi|312904320|ref|ZP_07763482.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0635]
gi|312905972|ref|ZP_07764985.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 512]
gi|312909318|ref|ZP_07768174.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 516]
gi|312953038|ref|ZP_07771891.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0102]
gi|384512358|ref|YP_005707451.1| glucose-1-phosphate adenylyltransferase [Enterococcus faecalis
OG1RF]
gi|384517711|ref|YP_005705016.1| hypothetical protein EF62_1032 [Enterococcus faecalis 62]
gi|421513636|ref|ZP_15960394.1| hypothetical protein YebC [Enterococcus faecalis ATCC 29212]
gi|422684700|ref|ZP_16742930.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4000]
gi|422688229|ref|ZP_16746388.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0630]
gi|422691325|ref|ZP_16749362.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0031]
gi|422695662|ref|ZP_16753641.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4244]
gi|422697480|ref|ZP_16755419.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1346]
gi|422702276|ref|ZP_16760112.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1302]
gi|422705807|ref|ZP_16763600.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0043]
gi|422721390|ref|ZP_16777982.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0017]
gi|422724355|ref|ZP_16780834.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2137]
gi|422725309|ref|ZP_16781773.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0312]
gi|422731299|ref|ZP_16787670.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0645]
gi|424671353|ref|ZP_18108356.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis 599]
gi|424677084|ref|ZP_18113944.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV103]
gi|424681173|ref|ZP_18117964.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV116]
gi|424682674|ref|ZP_18119439.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV129]
gi|424687939|ref|ZP_18124556.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV25]
gi|424689910|ref|ZP_18126447.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV31]
gi|424694874|ref|ZP_18131262.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV37]
gi|424697187|ref|ZP_18133522.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV41]
gi|424702202|ref|ZP_18138364.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV62]
gi|424702579|ref|ZP_18138727.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV63]
gi|424706587|ref|ZP_18142589.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV65]
gi|424716765|ref|ZP_18146067.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV68]
gi|424720938|ref|ZP_18150037.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV72]
gi|424725635|ref|ZP_18154325.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV73]
gi|424726827|ref|ZP_18155477.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV81]
gi|424742385|ref|ZP_18170708.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV85]
gi|424752401|ref|ZP_18180400.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV93]
gi|424760312|ref|ZP_18187940.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis R508]
gi|430359757|ref|ZP_19425984.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis OG1X]
gi|430369672|ref|ZP_19428687.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis M7]
gi|227074931|gb|EEI12894.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX0104]
gi|229306234|gb|EEN72230.1| protein of hypothetical function DUF28 [Enterococcus faecalis ATCC
29200]
gi|229308389|gb|EEN74376.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX1322]
gi|256597072|gb|EEU16248.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256682685|gb|EEU22380.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256710038|gb|EEU25082.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256950291|gb|EEU66923.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256988934|gb|EEU76236.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256991623|gb|EEU78925.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994048|gb|EEU81350.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256997903|gb|EEU84423.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157061|gb|EEU87021.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160107|gb|EEU90067.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257162745|gb|EEU92705.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291077661|gb|EFE15025.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
R712]
gi|291081417|gb|EFE18380.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
S613]
gi|306499458|gb|EFM68831.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0109]
gi|306506224|gb|EFM75389.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX2134]
gi|310627967|gb|EFQ11250.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 512]
gi|310629067|gb|EFQ12350.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0102]
gi|310632416|gb|EFQ15699.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0635]
gi|311290342|gb|EFQ68898.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 516]
gi|311292612|gb|EFQ71168.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0470]
gi|315025655|gb|EFT37587.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2137]
gi|315030527|gb|EFT42459.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4000]
gi|315031354|gb|EFT43286.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0017]
gi|315146891|gb|EFT90907.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4244]
gi|315153893|gb|EFT97909.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0031]
gi|315156691|gb|EFU00708.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0043]
gi|315159721|gb|EFU03738.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0312]
gi|315162694|gb|EFU06711.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0645]
gi|315166177|gb|EFU10194.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1302]
gi|315173939|gb|EFU17956.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1346]
gi|315578761|gb|EFU90952.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0630]
gi|323479844|gb|ADX79283.1| conserved hypothetical protein [Enterococcus faecalis 62]
gi|327534247|gb|AEA93081.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
OG1RF]
gi|401673235|gb|EJS79635.1| hypothetical protein YebC [Enterococcus faecalis ATCC 29212]
gi|402351767|gb|EJU86639.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV116]
gi|402355582|gb|EJU90353.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV103]
gi|402358831|gb|EJU93490.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis 599]
gi|402362137|gb|EJU96674.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV25]
gi|402365413|gb|EJU99833.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV31]
gi|402366631|gb|EJV00996.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV129]
gi|402369631|gb|EJV03904.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV37]
gi|402369877|gb|EJV04132.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV62]
gi|402376547|gb|EJV10484.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV41]
gi|402386799|gb|EJV20294.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV68]
gi|402386961|gb|EJV20455.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV63]
gi|402387407|gb|EJV20884.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV65]
gi|402391004|gb|EJV24323.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV73]
gi|402392590|gb|EJV25839.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV72]
gi|402398338|gb|EJV31288.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV81]
gi|402400503|gb|EJV33326.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV85]
gi|402403837|gb|EJV36490.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis R508]
gi|402404591|gb|EJV37208.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV93]
gi|429513221|gb|ELA02809.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis OG1X]
gi|429515769|gb|ELA05276.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis M7]
Length = 242
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GGP+P N L ++KAK ++P D + R IK+AS G+ E + E YE YG GGV
Sbjct: 36 AKAGGPDPAMNPALRLAVDKAKSANMPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLL 136
+++V LTD R+ VR GG + + GSV + F R + IK D ++D +L
Sbjct: 96 AVLVHALTDNRNRTATNVRVAFTRNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ L+AG ED+ P +++ + +++T + L +AG +
Sbjct: 156 EVVLEAGGEDLETSP------------EVFEIYTAPEDFTAVRDALEQAGYSLAQAELT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T + ++DE + L+ KL + DDV V+T
Sbjct: 203 MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
>gi|300862052|ref|ZP_07108132.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TUSoD Ef11]
gi|422739636|ref|ZP_16794810.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2141]
gi|428766190|ref|YP_007152301.1| DUF28 family protein [Enterococcus faecalis str. Symbioflor 1]
gi|300848577|gb|EFK76334.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TUSoD Ef11]
gi|315144554|gb|EFT88570.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2141]
gi|427184363|emb|CCO71587.1| DUF28 family protein [Enterococcus faecalis str. Symbioflor 1]
Length = 242
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GGP+P N L ++KAK ++P D + R IK+AS G+ E + E YE YG GGV
Sbjct: 36 AKAGGPDPAMNPALRLAVDKAKSANMPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLL 136
+++V LTD R+ VR GG + + GSV + F R + IK D ++D +L
Sbjct: 96 AVLVHALTDNRNRTATNVRVAFTRNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ L+AG ED+ P +++ + +++T + L +AG +
Sbjct: 156 EVVLEAGGEDLETSP------------EVFEIYTAPEDFTAVRDALEQAGYSLAQAELT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T + ++DE + L+ KL + DDV V+T
Sbjct: 203 MVPQTLLTLNDEQKAQLESLVDKLEDDDDVSEVFT 237
>gi|331697384|ref|YP_004333623.1| hypothetical protein Psed_3599 [Pseudonocardia dioxanivorans
CB1190]
gi|326952073|gb|AEA25770.1| UPF0082 protein yeeN [Pseudonocardia dioxanivorans CB1190]
Length = 250
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S + G + YE YG GV
Sbjct: 37 RTGGGDPDGNPTLYDAIQKAKKSSVPNDNIDRAVKRGSGADAGGADYQTITYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG MADPGSV + F R VV + +D +L
Sbjct: 97 AVLIECLTDNRNRAATEVRTAMTRNGGTMADPGSVAYLFNRKGVVIVPKNGLTEDDVLLA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V D E ++VVS + + + T L EAGI +++ + + L
Sbjct: 157 VLDAGAEEV-----------NDLGES-FEVVSEATDLVAVRTALVEAGIDYDSADPT-FL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D E + +LI L + D+V VY +
Sbjct: 204 PSMQVELDAEGAKKVFKLIDALEDSDEVQNVYAN 237
>gi|302338524|ref|YP_003803730.1| hypothetical protein Spirs_2014 [Spirochaeta smaragdinae DSM 11293]
gi|301635709|gb|ADK81136.1| protein of unknown function DUF28 [Spirochaeta smaragdinae DSM
11293]
Length = 248
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 21/240 (8%)
Query: 1 MQRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
++ K+ I K++ + +K+ GG +P +N L + KAK ++PKD VER
Sbjct: 10 IKHKKGAIDAKRGKAFTKIIKEITVAARMGGGDPEANPRLRTAVLKAKSANMPKDNVERA 69
Query: 54 IKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
IK+ + + ++E YE YG GGV+I+++ LTD R+ A VR ++ GG + + G
Sbjct: 70 IKKGTGDLEGVDYVELTYEAYGPGGVAILIDALTDNKNRTAADVRSILTKGGGNLGESGC 129
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F+R ++N ++ + ++AL+AGAEDV E DT E V++
Sbjct: 130 VSYLFQRKGIINYSAESYTEEAIFEVALEAGAEDV----STEGDTIE--------VMTAP 177
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ + L+ AG E S+ +P +T+ +DDE LI +L + DDV +V T+
Sbjct: 178 EDFEPVLKALQAAGFEEELAEVSK-VPDSTVTLDDEKTRKALRLIERLDDHDDVQSVATN 236
>gi|300856550|ref|YP_003781534.1| hypothetical protein CLJU_c33870 [Clostridium ljungdahlii DSM
13528]
gi|300436665|gb|ADK16432.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 246
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 117/215 (54%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K+GG NP SN+ L V+ KAK ++P+D V+R IK+ S + E++ YE YG GV
Sbjct: 36 AKEGGSNPDSNSKLRDVIAKAKANNMPQDTVQRAIKKGSGELTGVNYEEISYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR-RARVVNIKFTDADKDQLLD 137
+++V+ LTD RS + VR GG + G V + F+ + ++V + D D+D+++
Sbjct: 96 AMIVKALTDNKNRSASNVRAAFSRHGGNLGANGCVGWMFQAKGQIVIERKEDMDEDEIMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAED I E ++V++T +++ + KL E G F + + + +
Sbjct: 156 QVLDAGAEDFIAE------------EEVFEVITTVEDFGTVREKLEEQGFEFLSADIT-M 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T+ VD E + LI KL + DDV VY +
Sbjct: 203 IPDNTVAVDMETAGKVQRLIDKLEDDDDVQDVYHN 237
>gi|315651757|ref|ZP_07904762.1| glucose-1-phosphate adenylyltransferase [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315486012|gb|EFU76389.1| glucose-1-phosphate adenylyltransferase [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 253
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK +VP D +ER IK+A+ + + + YE YG GV
Sbjct: 47 VKEGGPDPNNNSKLRDVIAKAKANNVPNDTIERGIKKAAGDINSVNYEQNTYEGYGPNGV 106
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+VE LTD R+ A VR GG + G V F F + +++ + D D D+L+
Sbjct: 107 AIIVETLTDNKNRTAANVRAAFTKGGGNIGTQGCVSFMFDKKGQIIIDKEECDMDSDELM 166
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
ALD GAED E E+D+ Y++++ DN++ + L + GIP D
Sbjct: 167 MTALDLGAEDFSE----EEDS--------YEILTDPDNFSVVREGLEKLGIPM-ADAEIT 213
Query: 197 LLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVY 230
++P + + DE I LL+ DDV VY
Sbjct: 214 MIPQNWVTLSDEEDIKKMNRILDLLDAEDDVQNVY 248
>gi|307289932|ref|ZP_07569861.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0411]
gi|306498998|gb|EFM68487.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0411]
Length = 242
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GGP+P N L ++KAK ++P D + R IK+AS G+ E + E YE YG GGV
Sbjct: 36 AKAGGPDPAMNPALRLAVDKAKSANMPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLL 136
+++V LTD R+ VR GG + + GSV + F R + IK D ++D +L
Sbjct: 96 AVLVHALTDNRNRTATNVRVAFTRNGGSLGETGSVNYMFDRKGYIVIKREDHEIEEDDML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ L+AG ED+ P +++ + +++T + L +AG +
Sbjct: 156 EVVLEAGGEDLETSP------------EVFEIYTAPEDFTAVRDALEQAGYSLAQAELT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T + ++DE + L+ KL + DDV V+T
Sbjct: 203 MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
>gi|334364220|ref|ZP_08513212.1| DNA-binding regulatory protein, YebC/PmpR family [Alistipes sp.
HGB5]
gi|390947208|ref|YP_006410968.1| YebC/PmpR family DNA-binding regulatory protein [Alistipes
finegoldii DSM 17242]
gi|313159415|gb|EFR58778.1| DNA-binding regulatory protein, YebC/PmpR family [Alistipes sp.
HGB5]
gi|390423777|gb|AFL78283.1| DNA-binding regulatory protein, YebC/PmpR family [Alistipes
finegoldii DSM 17242]
Length = 241
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 23/240 (9%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK ++ WG +++ + VK GP+P+ NT L +++ AK ++PK+ VER
Sbjct: 8 RKARKMKRWGHMARTFTKLGKEIEIAVKAAGPDPSGNTRLRILMQNAKAENMPKENVERA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRA+EK + E +YE YG G++ +VE TD R+VA VR CGG + + GSV
Sbjct: 68 IKRATEKDAADYKEVIYEGYGSHGIAFLVETATDNTNRTVANVRMYFNKCGGTLGNSGSV 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F V KF A+ + ++ L ++I+ V+E +ED V + +
Sbjct: 128 AFMFDHKCV--FKFRPAEGVDMEELEL-----EMIDLGVDEFYPEEDGV----TVYAPYE 176
Query: 174 NYTDITTKLREAGIPFETDNG-SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ I L + G +E +G S LP T E+D E E ++L+ KL E DDV VY +
Sbjct: 177 SFGAIQKWLDDKG--YEIVSGESVYLPTDTKELDAEGRESIEKLVEKLEEDDDVTNVYHN 234
>gi|271967394|ref|YP_003341590.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270510569|gb|ACZ88847.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 250
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GGP+P N L + KA++ VP D +ER KR E G + +YE Y GG
Sbjct: 36 ARTGGPDPDGNPTLYDAITKARKSSVPIDNIERARKRGGGLEAGGADWQTIMYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ + VR + GG +ADPGSV + F R VV + + +D +L
Sbjct: 96 VAVLIECLTDNRNRAASEVRVALTRNGGSLADPGSVSYMFNRKGVVLVPKGELSEDDVLT 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V D D+ ++VVS + + + L+EAGI +++ S
Sbjct: 156 AVLDAGAEEV------NDLGDQ------FEVVSEATDLVPVRKALQEAGIDYDSAE-SSF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP + +D++ LI L + DDV V+ +
Sbjct: 203 LPTMNVPLDEDGARKVFRLIDALEDSDDVQNVWAN 237
>gi|408378756|ref|ZP_11176352.1| hypothetical protein QWE_14207 [Agrobacterium albertimagni AOL15]
gi|407747206|gb|EKF58726.1| hypothetical protein QWE_14207 [Agrobacterium albertimagni AOL15]
Length = 248
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 115/240 (47%), Gaps = 23/240 (9%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q IR R + K G P+P N L ++ AK +PKD +ER I
Sbjct: 11 MHRKGKQDGIRSKMFSKLAREITVAAKTGLPDPAMNAALRLAVQNAKAQSMPKDNIERAI 70
Query: 55 KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
K+AS E + YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 71 KKASGADAETYDAIRYEGYGPGGVAVIVETLTDNRNRTASVVRSTFSKAGGALGETGSVS 130
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F F + K + D D++++ A++AGAEDV+ +DED Y
Sbjct: 131 FSFDHVGEITYKASVGDADKVMEAAIEAGAEDVV--------SDEDGHTIYCA------- 175
Query: 175 YTDIT--TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ DI +K EA + + P TIEVD+E +LI L + DDV VY++
Sbjct: 176 FEDINEVSKALEAVLGGAESVKAIWKPQNTIEVDEEKATSLMKLIDTLEDDDDVQNVYSN 235
>gi|296270039|ref|YP_003652671.1| hypothetical protein Tbis_2066 [Thermobispora bispora DSM 43833]
gi|296092826|gb|ADG88778.1| protein of unknown function DUF28 [Thermobispora bispora DSM 43833]
Length = 250
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GGP+P +N L + KA++ VP + +ER KR E G + +YE YG GGV+I
Sbjct: 39 GGPDPDANPTLYDAILKARKNSVPLENIERARKRGGGLEAGGADWQTIMYEGYGPGGVAI 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
++E LTD R+ + VR + GG +ADPGSV + F+R VV + +D +L +
Sbjct: 99 LIECLTDNRNRAASEVRVALTRNGGSLADPGSVSYMFKRKGVVIVPKGSRTEDDVLMAVV 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAE+V +D E+ ++V+ + + L++AGI +E+ S LP
Sbjct: 159 DAGAEEV-------NDLGEN-----FEVICEPSDLIAVRQALQDAGIEYESAEVS-FLPT 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ +D+E+ LI L + DDV VY +
Sbjct: 206 VSVPLDEESARKVFRLIEALEDSDDVQNVYAN 237
>gi|326390108|ref|ZP_08211669.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
JW 200]
gi|325993756|gb|EGD52187.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
JW 200]
Length = 246
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 15/221 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K ++ K+GG +P +N+ L +EKAK ++P + ++R IK+ + E G E +YE
Sbjct: 30 KDIIKAAKEGGGDPNTNSKLRDAIEKAKANNLPNENIQRAIKKGTGELGGANLEEVIYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-D 131
YG G +I+VE LTD R+ +R + GG + GSV + F + ++ ++ D+ D
Sbjct: 90 YGPAGTAIIVEALTDNKNRTAGEIRHIFDRHGGSLGAAGSVTWMFDKVGIIIVEKNDSID 149
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
+D+L +A+DAGA+D + ED +++++ N+ ++ + +AG +
Sbjct: 150 EDELAMVAIDAGAQDF---------SAEDEE---FEIITEPSNFQEVKEAIEKAGYKI-S 196
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +LP TI++ E E ++LI KL E DDV VY +
Sbjct: 197 EAEVTMLPKNTIQLSPEDYEKFEKLIDKLEENDDVQNVYHN 237
>gi|323487122|ref|ZP_08092430.1| hypothetical protein HMPREF9474_04181 [Clostridium symbiosum
WAL-14163]
gi|323694629|ref|ZP_08108795.1| glucose-1-phosphate adenylyltransferase [Clostridium symbiosum
WAL-14673]
gi|355623211|ref|ZP_09047082.1| hypothetical protein HMPREF1020_01161 [Clostridium sp. 7_3_54FAA]
gi|323399623|gb|EGA92013.1| hypothetical protein HMPREF9474_04181 [Clostridium symbiosum
WAL-14163]
gi|323501397|gb|EGB17293.1| glucose-1-phosphate adenylyltransferase [Clostridium symbiosum
WAL-14673]
gi|354822539|gb|EHF06897.1| hypothetical protein HMPREF1020_01161 [Clostridium sp. 7_3_54FAA]
Length = 242
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 123/218 (56%), Gaps = 19/218 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D +ER IK+A+ E + YE YG GV
Sbjct: 36 VKEGGADPANNSRLRDVIAKAKANNMPNDTIERGIKKAAGDANSVNYENLTYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + PGSV F F + +++ + + D D+L+
Sbjct: 96 AIIVDALTDNKNRTAANVRSAFTKGGGNVGTPGSVSFMFDKKGQIIIDKEECEMDADELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP-FETDNGS 195
++LDAGAED E E+D+ Y+V++ ++++ + L + GIP E D
Sbjct: 156 MLSLDAGAEDFAE----EEDS--------YEVITAPEDFSAVREALEKEGIPMMEAD--V 201
Query: 196 ELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
++P T +E+ DD+A++ ++ L + DDV A Y +
Sbjct: 202 TMIPQTWVELTDDDAIKKMNRILDLLDDDDDVQATYHN 239
>gi|255973735|ref|ZP_05424321.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256957473|ref|ZP_05561644.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|307278247|ref|ZP_07559326.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0860]
gi|397699055|ref|YP_006536843.1| hypothetical protein EFD32_0476 [Enterococcus faecalis D32]
gi|422700819|ref|ZP_16758662.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1342]
gi|422711574|ref|ZP_16768503.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0027]
gi|422867918|ref|ZP_16914480.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TX1467]
gi|255966607|gb|EET97229.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256947969|gb|EEU64601.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|306504998|gb|EFM74189.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0860]
gi|315034409|gb|EFT46341.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0027]
gi|315170771|gb|EFU14788.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1342]
gi|329576934|gb|EGG58417.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TX1467]
gi|397335694|gb|AFO43366.1| hypothetical protein EFD32_0476 [Enterococcus faecalis D32]
Length = 242
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GGP+P N L ++KAK ++P D + R IK+AS G+ E + E YE YG GGV
Sbjct: 36 AKAGGPDPAMNPALRLAVDKAKSANMPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLL 136
+++V LTD R+ VR GG + + GSV + F R + IK D ++D +L
Sbjct: 96 AVLVHALTDNRNRTATNVRVAFTRNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ L+AG ED+ P +++ + +++T + L +AG +
Sbjct: 156 EVVLEAGGEDLETSP------------EVFEIYTVPEDFTAVRDALEQAGYSLAQAELT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T + ++DE + L+ KL + DDV V+T
Sbjct: 203 MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
>gi|294056004|ref|YP_003549662.1| hypothetical protein [Coraliomargarita akajimensis DSM 45221]
gi|293615337|gb|ADE55492.1| protein of unknown function DUF28 [Coraliomargarita akajimensis DSM
45221]
Length = 249
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 116/216 (53%), Gaps = 19/216 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
+ GG +P N L + KAK ++P D ++R IK+ + + E+V YE YG GGV
Sbjct: 37 RSGGGDPGFNPRLRTCILKAKAANMPADNIDRAIKKGTGELPGVVYEEVLYEGYGAGGVG 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE+ TD RS + VR + GG +A G+V F+F R I+ + D++ L+D+A
Sbjct: 97 VIVEITTDNKNRSASEVRSTMGKNGGNLAGVGAVAFQFDRKGQFIIEASQTDEESLMDVA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+AGAED++ A+ +++V+ Y ++ L E GI ET + SEL
Sbjct: 157 LEAGAEDIV------------TADDHFEVICPMTEYDSVSQALEEKGI--ETLS-SELAY 201
Query: 200 ITTIEV---DDEAMELNKELIAKLLELDDVDAVYTD 232
I IEV D + L+ KL +L+DV AV+ +
Sbjct: 202 IPNIEVPVSDKDTARKVLHLVEKLDDLEDVKAVHHN 237
>gi|345017505|ref|YP_004819858.1| hypothetical protein Thewi_1151 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|392941148|ref|ZP_10306792.1| DNA-binding regulatory protein, YebC/PmpR family
[Thermoanaerobacter siderophilus SR4]
gi|344032848|gb|AEM78574.1| UPF0082 protein yeeN [Thermoanaerobacter wiegelii Rt8.B1]
gi|392292898|gb|EIW01342.1| DNA-binding regulatory protein, YebC/PmpR family
[Thermoanaerobacter siderophilus SR4]
Length = 246
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 15/221 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K ++ K+GG +P +N+ L +EKAK ++P + ++R IK+ + E G E +YE
Sbjct: 30 KDIIKAAKEGGGDPNTNSKLRDAIEKAKANNLPNENIQRAIKKGTGELGGANLEEVIYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-D 131
YG G +I+VE LTD R+ +R + GG + GSV + F + ++ ++ D+ D
Sbjct: 90 YGPSGTAIIVEALTDNKNRTAGEIRHIFDRHGGSLGAAGSVTWMFDKVGIIIVEKNDSID 149
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
+D+L +A+DAGA+D + ED +++++ N+ ++ + +AG +
Sbjct: 150 EDELAMVAIDAGAQDF---------SAEDEE---FEIITEPSNFQEVKEAIEKAGYKI-S 196
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +LP TI++ E E ++LI KL E DDV VY +
Sbjct: 197 EAEVTMLPKNTIQLSPEDYEKFEKLIDKLEENDDVQNVYHN 237
>gi|326798500|ref|YP_004316319.1| hypothetical protein [Sphingobacterium sp. 21]
gi|326549264|gb|ADZ77649.1| UPF0082 protein yeeN [Sphingobacterium sp. 21]
Length = 241
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 118/217 (54%), Gaps = 11/217 (5%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+ GP+P SN+ L ++ AK +++PKD +E IKRASEK + + E VYE YG GV
Sbjct: 34 VKESGPHPESNSRLRTAIQNAKAVNMPKDRIEAAIKRASEKDAKGYEEHVYEGYGPHGVP 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFT-DADKDQLLDI 138
I++E TD R+VA +R GG + GS+ F F+R + T D + ++L
Sbjct: 94 ILIETATDNTNRTVANIRSYFTKAGGSLGKTGSLDFIFQRKSIFRFAATEDLNLEELELE 153
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS-DNYTDITTKLREAGIPFETDNGSEL 197
+D G E++ V D+ D VV TS +++ ++ L E GI ++ E
Sbjct: 154 LIDGGLEELY---VEADEEGNDIV-----VVQTSFEDFGNMQKLLEEKGIDVKSAK-LER 204
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
+ ++T EV +EA +LI K+ E DDV AVY + +
Sbjct: 205 INLSTTEVSEEASAEVMKLIDKIEEDDDVQAVYHNMV 241
>gi|148269594|ref|YP_001244054.1| hypothetical protein Tpet_0454 [Thermotoga petrophila RKU-1]
gi|281411688|ref|YP_003345767.1| hypothetical protein Tnap_0248 [Thermotoga naphthophila RKU-10]
gi|166227268|sp|A5IJV5.1|Y454_THEP1 RecName: Full=Probable transcriptional regulatory protein Tpet_0454
gi|147735138|gb|ABQ46478.1| protein of unknown function DUF28 [Thermotoga petrophila RKU-1]
gi|281372791|gb|ADA66353.1| protein of unknown function DUF28 [Thermotoga naphthophila RKU-10]
Length = 253
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 119/216 (55%), Gaps = 20/216 (9%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
++GG N +N L A +EKA+ ++PK+ +ER IKR + + + + E +YE Y GGV+
Sbjct: 37 REGGGNIETNPRLRAAVEKARAENMPKENIERAIKRGTGELEGVDYQEVIYEGYAPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDI 138
+ + LTD R+ +R + GG +A+ GSV + F R V+ I D ++L+ I
Sbjct: 97 VYIRALTDNKNRTAQELRHLFNKYGGSLAESGSVSWIFERKGVIEIPRDKVKDLEELMMI 156
Query: 139 ALDAGAEDV--IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
A+DAGAED+ E P+ ++++T +N +++ +KL EAG +E +
Sbjct: 157 AIDAGAEDIKDTEDPI--------------QIITTPENLSEVKSKLEEAG--YEVEAKVT 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T++V + E E + L ++DDV VY++
Sbjct: 201 FIPKNTMKVTGKDAEKVLEFLNALEDMDDVQEVYSN 236
>gi|15891221|ref|NP_356893.1| hypothetical protein Atu3727 [Agrobacterium fabrum str. C58]
gi|33517060|sp|Q8U9K1.1|Y3727_AGRT5 RecName: Full=Probable transcriptional regulatory protein Atu3727
gi|15159582|gb|AAK89678.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 248
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKTGMPDPNMNARLRLAIQNAKAQSMPKDNIERAIKKASGADSENYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+VVE LTD R+ + VR + GG + + GSV F F R + K D D++++ A
Sbjct: 96 VVVEALTDNRNRTASNVRSIFTKAGGALGETGSVSFSFDRVGEITYKAEVGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV + +E + ++ + +++ L G+ E ++ +
Sbjct: 156 IEAGADDV------------ESSEDGHTIICGFEAMNEVSKALE--GVLGEAESVKAIWK 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD+E + +LI L + DDV VY++
Sbjct: 202 PQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|408828110|ref|ZP_11213000.1| hypothetical protein SsomD4_13053 [Streptomyces somaliensis DSM
40738]
Length = 250
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 115/216 (53%), Gaps = 19/216 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA----FIEKVYEVYGYG 76
+ GG +P N L ++KAK+ VP ++ +KR S GQEA + +YE YG
Sbjct: 37 RTGGGDPEGNPTLYDAIQKAKKQSVPNKNIDSAVKRGS--GQEAGGADYETIMYEGYGPN 94
Query: 77 GVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLL 136
GV++++E LTD R+ + VR + GG MADPGSV + F R VV + +D +L
Sbjct: 95 GVAVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVILPKGGLTEDDVL 154
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
LDAGAE+V +D E ++V+S + + + T L++AGI +E+ S
Sbjct: 155 GAVLDAGAEEV-------NDLGE-----TFEVISEATDLVAVRTALQDAGIDYESAEAS- 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P +E+D+E +LI L + DDV V+ +
Sbjct: 202 FVPTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|383824378|ref|ZP_09979561.1| hypothetical protein MXEN_06123 [Mycobacterium xenopi RIVM700367]
gi|383337391|gb|EID15768.1| hypothetical protein MXEN_06123 [Mycobacterium xenopi RIVM700367]
Length = 250
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 109/212 (51%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GG +P N L ++KAK+ VP + +ER KR + E G + YE YG GV+I
Sbjct: 39 GGGDPAGNPTLYDAIQKAKKSSVPNENIERARKRGAGEEAGGADWQTITYEGYGPNGVAI 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
++E LTD R+ + VR + GG MADPGSV + F R VV ++ +D +L L
Sbjct: 99 LIECLTDNRNRAASEVRVAMTRNGGTMADPGSVSYLFSRKGVVTLEKDGLTEDDVLAAVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAEDV D D ++V++ + + T L++AGI +++ P
Sbjct: 159 DAGAEDV------NDLGDS------FEVITEPGDLVAVRTALQQAGIDYDSAEAG-FQPS 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ +D E +L+ L + DDV VYT+
Sbjct: 206 VTVPLDAEGARKVMKLVDALEDSDDVQNVYTN 237
>gi|367470987|ref|ZP_09470650.1| hypothetical protein PAI11_39910 [Patulibacter sp. I11]
gi|365813949|gb|EHN09184.1| hypothetical protein PAI11_39910 [Patulibacter sp. I11]
Length = 249
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 20/217 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
K+GG +P N LA ++KAK+ +PKD ++R I + + G +A F +YE YG GG
Sbjct: 36 AKEGGGDPVGNAALALAVQKAKDASMPKDNIQRAIDKGTGAGADAANFEAVMYEGYGPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++VE LTD R+ + VR + GG + +PGSV + F + V+ + D+D L+
Sbjct: 96 VAVLVEALTDNRNRTGSEVRHMFSKHGGSLGEPGSVAYLFDKKGVIVVDGDKHDEDDLM- 154
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A++AGAED + EDD ++V+S + T + L AGI +E +EL
Sbjct: 155 VAIEAGAED-----IEEDDGS-------FEVISEPGSLTAVREALDAAGIEYER---AEL 199
Query: 198 L--PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ P +D+E +LI L + DDV V+ +
Sbjct: 200 VYRPQVRTPLDEEQATKLAKLIDTLDDNDDVSEVHAN 236
>gi|414163918|ref|ZP_11420165.1| UPF0082 protein [Afipia felis ATCC 53690]
gi|410881698|gb|EKS29538.1| UPF0082 protein [Afipia felis ATCC 53690]
Length = 248
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E++ E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVIAARAENMPKDNIERAIKKAIGGEGESYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F V+ AD D +L+ A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDHVGVIEYDAAKADADTMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL---REAGIPFETDNGSE 196
+DAGA+DV+ + +D E Y S S+ + K R+A + ++
Sbjct: 156 IDAGADDVV--------SSDDGHEIYTSQASLSEAAKALEAKFGEPRKAALIWK------ 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P I V DE E +L+ +L E DDV VY +
Sbjct: 202 --PQNNIAVSDEVGEKLFKLLDQLNEHDDVQNVYAN 235
>gi|411001443|ref|ZP_11377772.1| hypothetical protein SgloC_01457 [Streptomyces globisporus C-1027]
Length = 250
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 37 RSGGVDPDGNPTLVDAIQKAKKSSVPNKNIDSAVKRGGGLEAGGTDYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++VVS + + + T L+EAGI +++ + L
Sbjct: 157 VLDAGAEEV-------NDLGE-----AFEVVSEATDMVAVRTALQEAGIDYDSAE-ANFL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|337286113|ref|YP_004625586.1| hypothetical protein Thein_0743 [Thermodesulfatator indicus DSM
15286]
gi|335358941|gb|AEH44622.1| protein of unknown function DUF28 [Thermodesulfatator indicus DSM
15286]
Length = 252
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 129/217 (59%), Gaps = 21/217 (9%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE---AFIEKVYEVYGYGG 77
+ GG +P++N L A ++ AK ++PK+ +ER I++ + GQE + E YE YG GG
Sbjct: 37 RMGGGDPSANPRLRAAIQAAKAANMPKENIERAIRKGT--GQEPGTTWEEVTYEGYGPGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++++ +TD R+V+ +R + CGG +A+PG+V + F + ++ + + D+++LL+
Sbjct: 95 VAVLIKSVTDNKRRTVSELRHIFSKCGGNLAEPGAVAWVFEQKGLILVNRNETDEEKLLE 154
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAEDV E E +++++ ++ ++ L EAG ++ + +
Sbjct: 155 AALEAGAEDVRE------------YESEFEIITLPEDLENVKKALEEAGFVIQSARVT-M 201
Query: 198 LPITTIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
+P +T++++DE A ++ + L+ L + DDV VY +
Sbjct: 202 VPKSTVKIEDEKTAQQMLR-LMETLEDHDDVQQVYAN 237
>gi|332638204|ref|ZP_08417067.1| hypothetical protein WcibK1_05875 [Weissella cibaria KACC 11862]
Length = 240
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 115/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P SN L V++KAK ++PKD ++R + +AS G + E YE YG GV+
Sbjct: 36 AKAGGVDPDSNAGLRLVIDKAKAANMPKDNIQRALDKASGAGGANYQELTYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF---TDADKDQLL 136
++V+ LTD I R+ A+VR K GG++ GSV F+F R + I+ D D+DQL
Sbjct: 96 VLVQALTDNINRTAASVRSTFKHFGGELGTTGSVSFQFDRKGYIEIERNEDNDIDEDQLF 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ L+AGAED+ T +D+ +++ + + ++ ++ L G D +
Sbjct: 156 EDMLEAGAEDM--------KTYDDQ----FEIYTDAKSFPEVRDALEAKGYTLVNDEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++ + V ++ L+ +L E DDV AV+T
Sbjct: 203 MVAQNPMAVPEDKQASLASLVDELEENDDVQAVFT 237
>gi|260438339|ref|ZP_05792155.1| glucose-1-phosphate adenylyltransferase [Butyrivibrio crossotus DSM
2876]
gi|292808926|gb|EFF68131.1| glucose-1-phosphate adenylyltransferase [Butyrivibrio crossotus DSM
2876]
Length = 247
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 15/199 (7%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEV 72
K + VK+GGP+P +N+ L V+ KAK ++P D ++R+IK+A+ A F YE
Sbjct: 30 KELMVAVKEGGPDPNNNSKLRDVIAKAKSNNMPNDTIDRSIKKAAGDANAANFTAITYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF--RRARVVNIKFTDA 130
YG G +I+VE LTD R+ + VR GG + PG V F F + ++N + +
Sbjct: 90 YGPNGTAIIVETLTDNKNRTASNVRNAFTKGGGNVGTPGCVSFMFDTKGQILINKEECNM 149
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D D+L+ +ALDAGA+D +D DED +++++ D+ + L +AG+ +
Sbjct: 150 DSDELMMLALDAGADDF-------NDEDED----AFEILTNPDDCGTVREALEKAGLKLD 198
Query: 191 TDNGSELLPITTIEVDDEA 209
+ ++P T +E+ D A
Sbjct: 199 QAEVT-MIPQTWVELTDPA 216
>gi|421186767|ref|ZP_15644149.1| hypothetical protein AWRIB418_1364 [Oenococcus oeni AWRIB418]
gi|399965571|gb|EJO00143.1| hypothetical protein AWRIB418_1364 [Oenococcus oeni AWRIB418]
Length = 240
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 117/215 (54%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P++N L V++KAK ++PKD V+R + +A+ G F E YE Y GG++
Sbjct: 36 AKAGGADPSANASLRLVMDKAKAANMPKDNVQRALDKATGAGDVKFEEATYEGYAPGGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDAD--KDQLL 136
++VE TD I R+V+ VR GG + GSV F+F RR V + + + +DQ++
Sbjct: 96 VLVETSTDNINRTVSNVRNSFNHHGGSLGTSGSVSFQFDRRGHFVIDRRSHPNITEDQVM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ A++AGAEDV T +D +++ S ++ + L + G ++
Sbjct: 156 EDAIEAGAEDV--------QTSDDA----FEIFSQPADFAAVEGALTDKGYDL-AESEIT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P +EV + E ++LI +L + DDV AVYT
Sbjct: 203 MIPQNPVEVPEADQEKFEKLIDELEDNDDVLAVYT 237
>gi|157691527|ref|YP_001485989.1| hypothetical protein BPUM_0743 [Bacillus pumilus SAFR-032]
gi|167016788|sp|A8FB12.1|Y743_BACP2 RecName: Full=Probable transcriptional regulatory protein BPUM_0743
gi|157680285|gb|ABV61429.1| hypothetical protein BPUM_0743 [Bacillus pumilus SAFR-032]
Length = 239
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G PNP SN L VLE+AK VPK IV+R I++A +E F E Y
Sbjct: 26 FGREIYVA-AKQGEPNPESNQALRFVLERAKTYSVPKHIVDRAIEKAKGGAEENFDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G ++V+ LT+ + R+ + VR GG M GSV + F + V+ ++
Sbjct: 85 EGFGPNGSMVIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDQTAVIGVEGKSE 144
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
++ L + D D++E ED+T V + D + + ++AG+
Sbjct: 145 EETLELLMEADVDVRDIME----EDET--------VIVYAEPDQFHQVQEAFKQAGVEEF 192
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +LP + +DDE+ E ++LI L EL+DV VY +
Sbjct: 193 TVAEITMLPQNEVTLDDESKEQFEKLIDVLEELEDVQQVYHN 234
>gi|373252603|ref|ZP_09540721.1| hypothetical protein NestF_06800 [Nesterenkonia sp. F]
Length = 252
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 19/216 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GGP+ N L ++KAK+ VP D ++R IKR + +A + E +YEV G G
Sbjct: 37 RSGGPDTDGNPALETAVQKAKKNSVPNDNIDRAIKRGAGLTGDAVEYEEILYEVRGPQGS 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR V GG MADPGSV + F+R +V + +D +L
Sbjct: 97 ALMVECLTDNRNRAASEVRTAVNRAGGTMADPGSVAYMFQRRGIVTLPKNGMSEDDVLAA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AG +DVIE D+T E R E + +D+ LREAGI + D E+
Sbjct: 157 VLEAGVDDVIE----NDETFEIRCE--------PQDLSDVVDALREAGIEHDND---EVA 201
Query: 199 PITTIEVDDEAMELNKEL-IAKLLE-LDDVDAVYTD 232
++ + VD + K L I +LE +DDV ++T+
Sbjct: 202 FVSDVSVDLDLAAAKKFLRIYDVLEDVDDVQNIHTN 237
>gi|239986450|ref|ZP_04707114.1| hypothetical protein SrosN1_03996 [Streptomyces roseosporus NRRL
11379]
gi|291443397|ref|ZP_06582787.1| UPF0082 protein [Streptomyces roseosporus NRRL 15998]
gi|291346344|gb|EFE73248.1| UPF0082 protein [Streptomyces roseosporus NRRL 15998]
Length = 250
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 37 RSGGVDPDGNPTLVDAIQKAKKSSVPNKNIDSAVKRGGGLEAGGTDYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++VVS + + + T L+EAGI +++ + L
Sbjct: 157 VLDAGAEEV-------NDLGE-----TFEVVSEATDMVAVRTALQEAGIDYDSAE-ANFL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|108799218|ref|YP_639415.1| hypothetical protein Mmcs_2251 [Mycobacterium sp. MCS]
gi|119868334|ref|YP_938286.1| hypothetical protein Mkms_2298 [Mycobacterium sp. KMS]
gi|126434876|ref|YP_001070567.1| hypothetical protein Mjls_2290 [Mycobacterium sp. JLS]
gi|122977046|sp|Q1B9S5.1|Y2251_MYCSS RecName: Full=Probable transcriptional regulatory protein Mmcs_2251
gi|166227705|sp|A3PYU9.1|Y2290_MYCSJ RecName: Full=Probable transcriptional regulatory protein Mjls_2290
gi|166227708|sp|A1UF88.1|Y2298_MYCSK RecName: Full=Probable transcriptional regulatory protein Mkms_2298
gi|108769637|gb|ABG08359.1| protein of unknown function DUF28 [Mycobacterium sp. MCS]
gi|119694423|gb|ABL91496.1| protein of unknown function DUF28 [Mycobacterium sp. KMS]
gi|126234676|gb|ABN98076.1| protein of unknown function DUF28 [Mycobacterium sp. JLS]
Length = 250
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKNFAKLIKNIEVAARTGGGDPGGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ YE YG GV++++E LTD R+ VR + GG MADPGSV + F R V
Sbjct: 81 ADWQTITYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVSYLFSRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
+ ++ +D +L L+AGAE+V D D ++++S + + T L
Sbjct: 141 ITLEKNGLSEDDVLMAVLEAGAEEVT------DLGDS------FEIISEPTDLVAVRTAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++AGI +++ + S P T+ +D E +L+ L + DDV VYT+
Sbjct: 189 QDAGIDYDSADAS-FQPSVTVPLDAEGARKVMKLVDALEDSDDVQDVYTN 237
>gi|206889587|ref|YP_002249658.1| hypothetical protein THEYE_A1868 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|226696157|sp|B5YHS2.1|Y1868_THEYD RecName: Full=Probable transcriptional regulatory protein
THEYE_A1868
gi|206741525|gb|ACI20582.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 251
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-----EAFIEKVYEVYGYGG 77
GG +P N L +EKA+E+++P D NIKRA KG + E +YE YG GG
Sbjct: 39 GGGDPEKNPRLRVAIEKAREVNMPMD----NIKRAIMKGTGELAGTTYEEVIYEGYGPGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I++E +TD R+V+ +R ++ GG + + G V + F + + + D+D L+
Sbjct: 95 VAILIEAMTDNKNRTVSEIRHLLSKHGGSLGESGCVSWIFEKKGYILVDKKTIDEDTLIS 154
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+AL+AG EDV P E+ Y+++ + + + T + +AGIP + +
Sbjct: 155 VALEAGVEDVKNDPKEEN----------YEIIVSPEQLNQVKTIIEKAGIPVSFAQVT-M 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP I ++ E E +L+ L + DDV VY +
Sbjct: 204 LPKNYISIEGEDAEKMLKLMDALEDHDDVQNVYAN 238
>gi|145594336|ref|YP_001158633.1| hypothetical protein Strop_1792 [Salinispora tropica CNB-440]
gi|189039017|sp|A4X5V5.1|Y1792_SALTO RecName: Full=Probable transcriptional regulatory protein
Strop_1792
gi|145303673|gb|ABP54255.1| protein of unknown function DUF28 [Salinispora tropica CNB-440]
Length = 249
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++NV + GG +P N L ++KAK+ VP D ++R +KR S E G
Sbjct: 21 RGKMFAKLIKNVEVAARTGGGDPAGNPTLYDAIQKAKKNSVPNDNIDRAVKRGSGLESGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG AD GSV + F R V
Sbjct: 81 ADYQTVMYEGYGPNGVALLIECLTDNRNRAATEVRTALTRNGGSFADAGSVSYLFSRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V + +D ++ LDAGAE+V +D E ++V+S + + T L
Sbjct: 141 VIVAKAGTTEDDVMLAVLDAGAEEV-------NDLGE-----AFEVLSEPGDLVAVRTAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++AGI +E+ S L+P ++ VD+E +LI L + DDV V+ +
Sbjct: 189 QDAGIEYESAE-SSLVPSVSVPVDEEGARKILKLIDVLEDCDDVQNVFAN 237
>gi|299134167|ref|ZP_07027360.1| protein of unknown function DUF28 [Afipia sp. 1NLS2]
gi|298590914|gb|EFI51116.1| protein of unknown function DUF28 [Afipia sp. 1NLS2]
Length = 248
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E++ E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVIAARAENMPKDNIERAIKKAIGGEGESYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F V+ AD + +L+ A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDHVGVIEYDAAKADAETMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL---REAGIPFETDNGSE 196
+DAGA+DV+ + ED E Y S S+ + K R+A + ++
Sbjct: 156 IDAGADDVV--------SSEDGHEIYTSQASLSEAAKALEAKFGEPRKAALIWK------ 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P I V DE E +L+ +L E DDV VY +
Sbjct: 202 --PQNNIAVSDEVGEKLFKLLDQLNEHDDVQNVYAN 235
>gi|94264072|ref|ZP_01287871.1| Protein of unknown function DUF28 [delta proteobacterium MLMS-1]
gi|93455488|gb|EAT05678.1| Protein of unknown function DUF28 [delta proteobacterium MLMS-1]
Length = 249
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 119/215 (55%), Gaps = 21/215 (9%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIV 81
GG + T N L + L AK ++PK+ VER IK+ + + + A E++ YE YG GGV+++
Sbjct: 39 GGGDSTGNPRLRSALAAAKAENMPKENVERAIKKGTGELEGAAYEEITYEGYGPGGVAVL 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
VE +TD R+VA VR GG + + SV + F + V I+ +D LL++AL+
Sbjct: 99 VEAMTDNRVRTVAEVRHAFSKAGGNLGETNSVSWMFDKKGQVFIERQGLAEDDLLEMALE 158
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAED+I E+ ++++ + ++ LRE G+P ++ ++P
Sbjct: 159 AGAEDMISD------------EQSFQILCDPGEFDQVSQALRERGLPV-SEAAVTMIPKN 205
Query: 202 TIEVDDEAMELNKELIAKLLEL----DDVDAVYTD 232
+EV DE + ++L+ K+LE+ DDV V+++
Sbjct: 206 LVEVSDE--KTARQLL-KMLEMLEDNDDVQQVHSN 237
>gi|300361336|ref|ZP_07057513.1| glucose-1-phosphate adenylyltransferase [Lactobacillus gasseri
JV-V03]
gi|300353955|gb|EFJ69826.1| glucose-1-phosphate adenylyltransferase [Lactobacillus gasseri
JV-V03]
Length = 243
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 18/232 (7%)
Query: 3 RKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ 62
++ + R+ Y+ K GGP+P+ N L V++KA+ ++PK +ER IK+A
Sbjct: 20 KRGKVFQKLSREIYMA-AKSGGPDPSGNPTLRMVMDKARAANMPKTNIERAIKKAEGNSD 78
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR- 121
E + E YE Y GGV+++VE LTD R+ + VR GG + GSV + F R
Sbjct: 79 EHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGY 138
Query: 122 -VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITT 180
V++ TDAD+DQ+L +DAG +D+ +T++D +++ + +T +
Sbjct: 139 IVIDRSTTDADEDQVLLDVMDAGGDDL--------ETNDDA----FEIYTDPKQFTAVRD 186
Query: 181 KLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
L +AG ++ N ++P T V + E LI L + DDV VYT
Sbjct: 187 ALEKAG--YKLANAELTMIPQNTTPVPADKKEQFSHLIDALEDNDDVSNVYT 236
>gi|387789899|ref|YP_006254964.1| YebC/PmpR family DNA-binding regulatory protein [Solitalea
canadensis DSM 3403]
gi|379652732|gb|AFD05788.1| DNA-binding regulatory protein, YebC/PmpR family [Solitalea
canadensis DSM 3403]
Length = 239
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 118/240 (49%), Gaps = 24/240 (10%)
Query: 3 RKQSCIRGWGRKSYLRN---------VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RKQS ++ WG+ + L VK GGPNP SN L +++ AK ++PKD +E
Sbjct: 8 RKQSKMKRWGKMAKLFTRIGKDIVIAVKAGGPNPESNARLRVIMQNAKGANMPKDRIEAA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRA++K + E VYE YG V+I+VE TD I R+V VR + GG + G +
Sbjct: 68 IKRATDKDTSNYEEIVYEGYGPYKVAILVETSTDNINRTVGNVRSYITRSGGTLGTSGLL 127
Query: 114 MFKFRRARVVNIKFTDADKDQL-LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
F F R V I D ++L LD+ +D GAE+V + E + +
Sbjct: 128 NFIFERKAVFRIAADGVDVEELELDL-IDFGAEEVFQD------------ENEITITTEF 174
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ + L + G + E T EV E ++LI KL E DDV+AVY +
Sbjct: 175 EDFGKMQKALEDKGFNI-ISSEFERFCTTYKEVTAEQEAEVQKLIDKLEEDDDVNAVYHN 233
>gi|325963421|ref|YP_004241327.1| hypothetical protein Asphe3_20380 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469508|gb|ADX73193.1| conserved hypothetical protein TIGR01033 [Arthrobacter
phenanthrenivorans Sphe3]
Length = 251
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I KS+ + +K GGP+ N L + KAK+ VP D ++R I
Sbjct: 11 KHKKAIIDSRRAKSFAKLIKNIEVAARMGGPDLAGNPGLELAVTKAKKTSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + E +YE G G ++++E LTD R+ + VR + GG +ADPGS
Sbjct: 71 KRGAGLTGEVVDYTEIMYEARGPQGSALLIECLTDNKNRAASEVRLAISRNGGTIADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R VVN+ +D +L LDAGAE+V +D+ D +++ S
Sbjct: 131 VSYLFTRKGVVNLPKNGLSEDDVLMAVLDAGAEEV------KDNGD------TFEIHSEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ I L+EAGI ++TD E +P +E+D + +L L +LDDV VY++
Sbjct: 179 GDLPAIREALKEAGIEYDTDE-VEFVPSMQVELDVDGARKFLKLADALEDLDDVQNVYSN 237
>gi|225848858|ref|YP_002729022.1| hypothetical protein SULAZ_1049 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644599|gb|ACN99649.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 251
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 120/215 (55%), Gaps = 20/215 (9%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIV 81
GG +P +N L +EKAKE+++P + +ER IKR + + + E+V YE YG GV+I+
Sbjct: 39 GGGDPEANPRLRMAIEKAKEVNMPSENIERAIKRGTGELEGVNYEEVRYEGYGPEGVAII 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
VE TD R+ A VR + GG + G V F F V+N++ + ++++L+ AL+
Sbjct: 99 VEATTDNRNRTTAEVRHIFSKYGGNLGSSGCVSFLFEDKGVINVEKSKYSEEEILEKALE 158
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL--LP 199
AGAEDVI DD D YY++ ++ ++ + L + G+ +EL +P
Sbjct: 159 AGAEDVI-----TDDED------YYEIRTSVQDFYKVKENLEKMGVEIAR---AELTKIP 204
Query: 200 ITTIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
TT+++ +E A +L K L+ L + DDV VY +
Sbjct: 205 TTTVKITNEETATKLMK-LLDALEDNDDVQKVYAN 238
>gi|424862887|ref|ZP_18286800.1| hypothetical protein NT01SARS_0195 [SAR86 cluster bacterium SAR86A]
gi|400757508|gb|EJP71719.1| hypothetical protein NT01SARS_0195 [SAR86 cluster bacterium SAR86A]
Length = 245
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 129/235 (54%), Gaps = 22/235 (9%)
Query: 4 KQSCIRGWGRKSYLRNVK---KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 60
+Q RG +R + K GP+P N L LEKA ++PKD ++R I++ S
Sbjct: 16 RQDASRGKIWTKVIREITVAAKDGPDPADNPRLRLALEKANSANMPKDTIKRAIEKGSGT 75
Query: 61 GQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
G+ +E++ +E YG GGV+I+VE +TD R+V+ VR GG + GSV + F++
Sbjct: 76 GETGVLEEITFEGYGPGGVAILVETMTDNRNRTVSDVRHAFSKYGGNLGTDGSVSYLFKK 135
Query: 120 ARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+V + FT+ ++L++I +D GA+D+ E E D ++++++ S+++ D
Sbjct: 136 LGIVQVDKNFTE---EELMEIVIDIGADDLSE----EGD--------FFEIITDSNSFND 180
Query: 178 ITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++E I + ++ L T +++D+E E ++ + +LDDV V+T+
Sbjct: 181 VVDAIKEKKIKY-SNAELTLRAETLVKLDNEMSEKVLNIMEFMDDLDDVQEVHTN 234
>gi|237785623|ref|YP_002906328.1| hypothetical protein ckrop_1032 [Corynebacterium kroppenstedtii DSM
44385]
gi|259645700|sp|C4LIY0.1|Y1032_CORK4 RecName: Full=Probable transcriptional regulatory protein
ckrop_1032
gi|237758535|gb|ACR17785.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
44385]
Length = 250
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P++N L +++KAK+ VP D +ER KR S E G + YE YG GG
Sbjct: 36 ARTGGGDPSANPTLDDMIKKAKKASVPNDNIERARKRGSGEEAGGADWETVTYEGYGNGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I++E LTD R+ VR + GG MAD GSV + F R VV + +D +L
Sbjct: 96 VAILIECLTDNRNRAATDVRTAMNKNGGNMADAGSVAYMFNRKGVVQLPKEGNTEDDILM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V + N ++VVS + + + + L+EAG+ +++ +
Sbjct: 156 AVLDAGAEEVNDLGQN------------FEVVSAAGDLSAVRDALKEAGLEYDSAE-PDY 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++D LI L + DDV VYT+
Sbjct: 203 RADVKVQLDASGARKIFHLIDALEDSDDVQNVYTN 237
>gi|304436500|ref|ZP_07396474.1| glucose-1-phosphate adenylyltransferase [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304370546|gb|EFM24197.1| glucose-1-phosphate adenylyltransferase [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 242
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 25/220 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI RA +KG A + E +YE YG
Sbjct: 36 VRMGGADPTGNMRLKLALSKAKANNIPKD----NINRAIQKGLGATEGSNYEEVIYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKD 133
GG ++++++LTD R+ A VR + GG + G V + F++ V + + T D+D
Sbjct: 92 PGGTAVMLDILTDNRNRTAADVRHLFSKYGGNLGQDGCVSWMFKKKAVFVVERDTFDDED 151
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL++ L+AGAED+ +EDD +++V+ D Y I T L E GI ET +
Sbjct: 152 ALLELVLEAGAEDM----RSEDDV--------FEIVAEPDAYDAIETVLGEKGI--ETAS 197
Query: 194 GS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT+ + D+ E + LI L + DDV VY++
Sbjct: 198 AEVTMVPDTTVHLVDKDAEKMQTLIDALEDNDDVQNVYSN 237
>gi|444910772|ref|ZP_21230951.1| hypothetical protein D187_01571 [Cystobacter fuscus DSM 2262]
gi|444718869|gb|ELW59677.1| hypothetical protein D187_01571 [Cystobacter fuscus DSM 2262]
Length = 249
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 112/215 (52%), Gaps = 22/215 (10%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIV 81
GG NP N L + A+E ++P D ++R IK+ + E E++ E VYE YG GGV+++
Sbjct: 39 GGGNPEGNARLRVAIAAAREANMPNDNIQRAIKKGTGELEGESYEEIVYEGYGPGGVALL 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
VE LTD RS A VR ++ GG M GSV + F + VV +K +D +++ ALD
Sbjct: 99 VECLTDNRNRSAADVRSMLGKEGGNMGAEGSVSWMFHKKGVVTVK-PGPSEDVVMEKALD 157
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDV+ P+ ED ++V + + + L AG+ + LP
Sbjct: 158 AGAEDVL--PLGEDG---------FEVRCAPADLHAVASALEGAGLKLGEQKWT-YLPQN 205
Query: 202 TIEVDDEAMELNKELIAKLLEL----DDVDAVYTD 232
T+ V+ + N + KL+EL DDV VY +
Sbjct: 206 TVRVEGD----NARKMLKLMELLEDNDDVQNVYAN 236
>gi|420241253|ref|ZP_14745402.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF080]
gi|398072049|gb|EJL63282.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF080]
Length = 248
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 19/238 (7%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q IR R + K G P+PT N L ++ AK +PKD ++R I
Sbjct: 11 MHRKGKQDSIRSKMFSKLAREITVAAKTGLPDPTMNAALRLAIQNAKAQSMPKDNIDRAI 70
Query: 55 KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
K+AS E + YE YG GG +++VE LTD R+ + VR + GG + + GSV
Sbjct: 71 KKASGSDAENYDSVRYEGYGPGGTAVIVEALTDNRNRTASNVRSIFTKAGGVLGETGSVS 130
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F F + K + D D++++ A++AGA+DV TDED + ++ ++
Sbjct: 131 FSFDHVGEITYKASVGDADKVMEAAIEAGADDVT--------TDEDG----HTIICAFES 178
Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ L EA + P TIEVD+E + +LI L + DDV +VY++
Sbjct: 179 LGEVSKAL-EATLGQAETVKVIWRPQNTIEVDEEKAQSLLKLIDNLEDDDDVQSVYSN 235
>gi|86751376|ref|YP_487872.1| hypothetical protein RPB_4273 [Rhodopseudomonas palustris HaA2]
gi|119391999|sp|Q2IS49.1|Y4273_RHOP2 RecName: Full=Probable transcriptional regulatory protein RPB_4273
gi|86574404|gb|ABD08961.1| Protein of unknown function DUF28 [Rhodopseudomonas palustris HaA2]
Length = 248
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 107/215 (49%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVIAARAENMPKDNIERAIKKAIGGDSENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R V+ A D +L+ A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRTGVIEYDADKASADDMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV +E ++V ++ D + D+ L F + L+
Sbjct: 156 IEAGADDVAS------------SESGHEVYASQDTFRDVAKALE---AKFGEARKAALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L + DDV VY +
Sbjct: 201 KPQNTVAVDDETGEKLFKLMDHLNDHDDVQNVYAN 235
>gi|359728331|ref|ZP_09267027.1| hypothetical protein Lwei2_16019 [Leptospira weilii str.
2006001855]
gi|417778541|ref|ZP_12426346.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira weilii
str. 2006001853]
gi|410781334|gb|EKR65908.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira weilii
str. 2006001853]
Length = 249
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 117/213 (54%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER IK+ + + E+ +YE +G GG++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGDLEGVVYEECLYECFGSGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDELVDLA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ AGAEDVI NE + Y+V++T D+Y + L E G+ E +
Sbjct: 157 VGAGAEDVI----NEGEV--------YRVITTPDDYESVLQALNEKGLKSEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ D E E +LI +L DDV +V ++
Sbjct: 205 VSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|255319220|ref|ZP_05360437.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262379722|ref|ZP_06072878.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|421465280|ref|ZP_15913968.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
radioresistens WC-A-157]
gi|255303613|gb|EET82813.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262299179|gb|EEY87092.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|400204542|gb|EJO35526.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
radioresistens WC-A-157]
Length = 249
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 130/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + K GGP+ SN L AV+EKA +++ +D + R I+R A
Sbjct: 16 KQDASRGKVFTKYIREIVTAAKLGGPDAASNPRLRAVVEKALSVNMTRDTINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEITYEGYGTGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTSGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D ++++L++AL+AGAED+ ++ED+ V++T +++ D
Sbjct: 136 KRG--EISFDDLSLEEKILEVALEAGAEDI---EISEDE---------ILVITTPESFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALSAAGL--KSDNAEVVMSPSTKAEITDIDQAKQIMK-MIDMLEDLDDVQNVYTN 236
>gi|222099181|ref|YP_002533749.1| hypothetical protein CTN_0207 [Thermotoga neapolitana DSM 4359]
gi|221571571|gb|ACM22383.1| Hypothetical Protein CTN_0207 [Thermotoga neapolitana DSM 4359]
Length = 254
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 119/216 (55%), Gaps = 20/216 (9%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
++GG NP +N L A +E+A+ ++PK+ +E+ IKR + + + + E VYE Y GGV+
Sbjct: 38 REGGGNPETNPRLRAAIERARAENMPKENIEKAIKRGTGELEGVDYQEVVYEGYAPGGVA 97
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLDI 138
+ + LTD R+ +R + GG +A+ GSV + F R V+ I K D ++L+ +
Sbjct: 98 VYIRALTDNKNRTAQELRHLFSKHGGSLAESGSVSWIFERKGVIEIAKDKVKDLEELMML 157
Query: 139 ALDAGAEDV--IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
A+DAGAED+ E P+ ++++ ++ +++ +L EAG +E D
Sbjct: 158 AIDAGAEDIKDTEDPI--------------QIITAPEDLSEVKRQLEEAG--YEVDAKVT 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T+ V + E EL+ L ++DDV VY++
Sbjct: 202 FIPKNTVRVTGKDAEKVLELLNALEDMDDVQEVYSN 237
>gi|363580119|ref|ZP_09312929.1| hypothetical protein FbacHQ_01121 [Flavobacteriaceae bacterium
HQM9]
Length = 239
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 15/236 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK ++PKD VER IK+AS
Sbjct: 13 MKRWSAMAKTFTRIGKDIVMAVKEGGPDPASNSRLRAVIQNAKAANMPKDNVERAIKKAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G++I+VE TD R+VA VR C G + GSV F F
Sbjct: 73 DKDQGDYKEVLFEGYAPHGIAILVETATDNNNRTVANVRAAFNKCNGNLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE++ + DED Y + +++ I
Sbjct: 133 HTCNFRINAEGIDVEELELEFIDFGAEEIFK--------DEDGILIY----APFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
+L I +G E +P T E+ + + ++L+ KL E DDV VY +
Sbjct: 181 QKELENRNIEI-LSSGFERIPQVTKELSGDELADVEKLLEKLEEDDDVQNVYHSMV 235
>gi|390942737|ref|YP_006406498.1| YebC/PmpR family DNA-binding regulatory protein [Belliella baltica
DSM 15883]
gi|390416165|gb|AFL83743.1| DNA-binding regulatory protein, YebC/PmpR family [Belliella baltica
DSM 15883]
Length = 235
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 124/240 (51%), Gaps = 24/240 (10%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK+ + W + K + VK GGP+P +NT L +++ AK +PKD +E
Sbjct: 8 RKERKFKRWNKMSKVFTRLGKEIVMAVKAGGPDPVNNTKLRTIIQNAKGAAMPKDRIEAA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRAS K ++ + E +YE YG GV++++E TD R+VA +R G ++ GSV
Sbjct: 68 IKRASNKDEKDYEEVLYEGYGPHGVAVIIETSTDNTNRTVANIRSYFSKSNGSLSTSGSV 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F + V + D ++L +D G D+ D++ E + V + +
Sbjct: 128 SFMFNKKAVFRFAQGEYDIEELELELIDFGL----------DEIDQNEGEIF--VYTAFE 175
Query: 174 NYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
++ ++ L + I + + P TT+E+ +D+ E+NK LI KL + DD+++V+T+
Sbjct: 176 DFGNMQKALEDKNIEI-INADFQWFPTTTVELPEDQEEEINK-LIEKLEDDDDINSVFTN 233
>gi|418404641|ref|ZP_12978091.1| hypothetical protein SM0020_31052 [Sinorhizobium meliloti
CCNWSX0020]
gi|359501395|gb|EHK74007.1| hypothetical protein SM0020_31052 [Sinorhizobium meliloti
CCNWSX0020]
Length = 248
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 19/238 (7%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q +R R + K G P+PT N L ++ AK +PKD +ER +
Sbjct: 11 MHRKGRQDAVRSKMFSKLAREITVAAKTGLPDPTMNPRLRLAIQNAKAQSMPKDNIERAV 70
Query: 55 KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
K+A+ E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 71 KKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSTFTKAGGALGETGSVS 130
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F F R + K + D D++++ A++AGA+DV +TDE+ + + ++
Sbjct: 131 FSFDRVGEITYKLSAGDADKVMEAAIEAGADDV--------ETDEEG----HTITCGFED 178
Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ L A ET + P T+ VD+E + +LI L + DDV VY++
Sbjct: 179 IGEVSKALEGALGEAETVK-AVWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|289578206|ref|YP_003476833.1| hypothetical protein Thit_1001 [Thermoanaerobacter italicus Ab9]
gi|297544487|ref|YP_003676789.1| hypothetical protein Tmath_1058 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289527919|gb|ADD02271.1| protein of unknown function DUF28 [Thermoanaerobacter italicus Ab9]
gi|296842262|gb|ADH60778.1| protein of unknown function DUF28 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 246
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 15/221 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K ++ K+GG +P +N+ L +EKAK ++P + ++R IK+ + E G E +YE
Sbjct: 30 KDIIKAAKEGGGDPNTNSKLRDAIEKAKANNLPNENIQRAIKKGTGELGGANLEEVIYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-D 131
YG G +I+VE LTD R+ +R + GG + GSV + F + ++ ++ D+ D
Sbjct: 90 YGPAGTAIIVEALTDNKNRTAGEIRHIFDRNGGSLGAAGSVTWMFDKVGIITVRKDDSID 149
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
+++L +A+DAGAED + ED +++++ N+ ++ + +AG +
Sbjct: 150 EEELAMVAIDAGAEDF---------SAEDEE---FEIITEPSNFQEVKEAIEKAGYKI-S 196
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +LP TI++ E + ++LI KL E DDV VY +
Sbjct: 197 EAEVTMLPKNTIQLSPEDYQKFEKLIDKLEENDDVQNVYHN 237
>gi|359421092|ref|ZP_09213022.1| hypothetical protein GOARA_064_00930 [Gordonia araii NBRC 100433]
gi|358242957|dbj|GAB11091.1| hypothetical protein GOARA_064_00930 [Gordonia araii NBRC 100433]
Length = 250
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + E G + YE YG G
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGGADWQNITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ VR + GG MADPGSV + F R VV ++ + +D +L
Sbjct: 96 VALLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVAYLFTRKGVVTLEKSGQSEDDILM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E ++VVS + + T L+EAGI +++ ++
Sbjct: 156 AVLDAGAEEV-------NDLGES-----FEVVSEPTDLVAVRTALQEAGIDYDSAE-ADF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD + +LI L + DDV VY++
Sbjct: 203 RASVEVPVDADGARKVFKLIDALEDSDDVQNVYSN 237
>gi|385676949|ref|ZP_10050877.1| hypothetical protein AATC3_13584 [Amycolatopsis sp. ATCC 39116]
Length = 250
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP+D +ER KR + E G + YE YG G
Sbjct: 36 ARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGADWQTINYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ VR + GG +ADPGSV + F R VV + D +D +L
Sbjct: 96 VAVLIECLTDNRNRAAGEVRTALTRNGGSLADPGSVSYLFNRKGVVIMPKNDLSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V + N +++VS + + ++ L++AG +E+ + +
Sbjct: 156 AVLDAGAEEVNDLGDN------------FEIVSEATDLINVRKALQDAGYDYESADPT-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP ++ +D E + LI L + DDV VY +
Sbjct: 203 LPSVSVPLDAEGAKKVFRLIDALEDCDDVQNVYAN 237
>gi|357402868|ref|YP_004914793.1| hypothetical protein SCAT_5302 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386358946|ref|YP_006057192.1| hypothetical protein SCATT_52990 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337769277|emb|CCB77990.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365809454|gb|AEW97670.1| hypothetical protein SCATT_52990 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 250
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RTGGADPDGNPTLYDAIQKAKKNSVPNKNIDSAVKRGAGLEAGGADYQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASEVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E+ ++VVS + + T L+E GI +E+ + +
Sbjct: 157 VLDAGAEEV-------NDLGEN-----FEVVSEPGDLVAVRTALQEQGIDYESAE-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|28493233|ref|NP_787394.1| hypothetical protein TWT266 [Tropheryma whipplei str. Twist]
gi|28572653|ref|NP_789433.1| hypothetical protein TW504 [Tropheryma whipplei TW08/27]
gi|54039951|sp|P67192.1|Y504_TROW8 RecName: Full=Probable transcriptional regulatory protein TW504
gi|54042655|sp|P67191.1|Y266_TROWT RecName: Full=Probable transcriptional regulatory protein TWT_266
gi|28410785|emb|CAD67171.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
gi|28476274|gb|AAO44363.1| unknown [Tropheryma whipplei str. Twist]
Length = 252
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 117/216 (54%), Gaps = 13/216 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
K+GGP+ N LA ++KAK+ VP D ++R IKR S E ++ VYEV + GV
Sbjct: 37 KQGGPDLAGNPGLAEAVQKAKKNSVPNDNIDRAIKRGSGLTGEHINYVSLVYEVKAFDGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R A +R +V G M +PGS+ + F+R +V ++ DA+ + L
Sbjct: 97 ALLVECLTDNKNRCAAGIRSIVTRSGCSMVNPGSLAYNFKRKGIVVLQDRDANGNLL--- 153
Query: 139 ALDAGAEDVIEPPVNEDDTDE--DRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ED++ V E + D+ + +++++ N + + LR++GI + + +
Sbjct: 154 -----SEDLVLSAVLEAEVDDIVPTGDCGFEIIAEPSNLSAVCNALRDSGIQYRSVE-TV 207
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P +T+ + ++ + +I L E DDV VYT+
Sbjct: 208 YVPNSTVSLPEQKYDRIIRMIEALEESDDVQGVYTN 243
>gi|338814877|ref|ZP_08626852.1| hypothetical protein ALO_21429 [Acetonema longum DSM 6540]
gi|337273182|gb|EGO61844.1| hypothetical protein ALO_21429 [Acetonema longum DSM 6540]
Length = 246
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 121/219 (55%), Gaps = 23/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
VK GG +P N L L+KA+E ++PK+ NI+RA +KG A + E +YE YG
Sbjct: 36 VKNGGSDPAGNMRLKLALQKARENNIPKE----NIQRAIQKGAGALDGSSYEEILYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GGV+I+++++TD R+ A +R + GG + + G V + F + ++ ++ + AD++
Sbjct: 92 PGGVAIMLDIMTDNRNRTAADIRHLFSKHGGNLGESGCVSWMFAQKGIIRVEKSAADEES 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L+ + LDAGAED + ED E +++++ D + + L + I +
Sbjct: 152 LMLLVLDAGAEDF---------SAED--EEAFEIITAPDQFEAVHNALEASKITVASSEI 200
Query: 195 SELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P TTI + D+A +L K L+ L E DDV VY +
Sbjct: 201 T-MVPQTTIALAGDDAAKLIK-LVDALEEHDDVQEVYGN 237
>gi|15966506|ref|NP_386859.1| hypothetical protein SMc03969 [Sinorhizobium meliloti 1021]
gi|334317510|ref|YP_004550129.1| hypothetical protein Sinme_2808 [Sinorhizobium meliloti AK83]
gi|384530636|ref|YP_005714724.1| hypothetical protein [Sinorhizobium meliloti BL225C]
gi|384537338|ref|YP_005721423.1| hypothetical protein SM11_chr2917 [Sinorhizobium meliloti SM11]
gi|407721819|ref|YP_006841481.1| hypothetical protein BN406_02610 [Sinorhizobium meliloti Rm41]
gi|433614585|ref|YP_007191383.1| DNA-binding regulatory protein, YebC/PmpR family [Sinorhizobium
meliloti GR4]
gi|33517136|sp|Q92M88.1|Y2753_RHIME RecName: Full=Probable transcriptional regulatory protein R02753
gi|15075777|emb|CAC47332.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333812812|gb|AEG05481.1| UPF0082 protein yeeN [Sinorhizobium meliloti BL225C]
gi|334096504|gb|AEG54515.1| UPF0082 protein yeeN [Sinorhizobium meliloti AK83]
gi|336034230|gb|AEH80162.1| hypothetical protein SM11_chr2917 [Sinorhizobium meliloti SM11]
gi|407320051|emb|CCM68655.1| hypothetical protein BN406_02610 [Sinorhizobium meliloti Rm41]
gi|429552775|gb|AGA07784.1| DNA-binding regulatory protein, YebC/PmpR family [Sinorhizobium
meliloti GR4]
Length = 248
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 19/238 (7%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q +R R + K G P+PT N L ++ AK +PKD +ER +
Sbjct: 11 MHRKGRQDAVRSKMFSKLAREITVAAKTGLPDPTMNPRLRLAIQNAKAQSMPKDNIERAV 70
Query: 55 KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
K+A+ E + E YE YG GGV+++VE LTD R+ + VR GG + + GSV
Sbjct: 71 KKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSTFTKAGGALGETGSVS 130
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F F R + K + D D++++ A++AGA+DV +TDE+ + + ++
Sbjct: 131 FSFDRVGEITYKLSAGDADKVMEAAIEAGADDV--------ETDEEG----HTITCGFED 178
Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ L A ET + P T+ VD+E + +LI L + DDV VY++
Sbjct: 179 IGEVSKALEGALGEAETVK-AVWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|256371999|ref|YP_003109823.1| hypothetical protein Afer_1219 [Acidimicrobium ferrooxidans DSM
10331]
gi|256008583|gb|ACU54150.1| protein of unknown function DUF28 [Acidimicrobium ferrooxidans DSM
10331]
Length = 250
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 118/216 (54%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
++GG + ++N L +++KA++ VP+ +ER IKR + + + A E+V YE Y GGV
Sbjct: 36 AREGGGDTSANATLRTMVQKARDASVPQATIERAIKRGTGELEGARYEQVNYEGYAPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V LTD R+ A VR GG +A+PG+V ++F+R + + DAD+D+L
Sbjct: 96 AIIVSCLTDNRNRTGADVRAAFSRNGGSLAEPGAVSWQFQRLGQIRLS-RDADEDELFQA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL AGAED+ DD D + V + + + L AG E+ EL+
Sbjct: 155 ALAAGAEDLT------DDGD------AWLVTVAASDLGAVRDALEAAGFAVESAE-VELV 201
Query: 199 PITTIEVDD--EAMELNKELIAKLLELDDVDAVYTD 232
P TT+ V+D EA + + L+ L +LDDV V +
Sbjct: 202 PQTTVPVEDPQEARRVLR-LVEALEDLDDVQEVTAN 236
>gi|164687570|ref|ZP_02211598.1| hypothetical protein CLOBAR_01211 [Clostridium bartlettii DSM
16795]
gi|164603344|gb|EDQ96809.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
bartlettii DSM 16795]
Length = 239
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 113/215 (52%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI-KRASEKGQEAFIEKVYEVYGYGGV 78
++GG +P N L ++KAK ++P D ++R I K A G E + YE YG GGV
Sbjct: 33 AREGGADPEYNAALKTAIDKAKADNMPNDNIKRAIDKGAGAGGGEDYFSNTYEGYGPGGV 92
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ +R GG + G V F F R + I + ++QL+D
Sbjct: 93 AVIVETLTDNKNRTAGNIRYYFDKNGGNLGTTGCVGFMFDRKGQILIAAENVSEEQLMDD 152
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGA+D+I T+ED ++VV+ +++ + L E G F + + +L+
Sbjct: 153 ALEAGADDII--------TEEDG----FEVVTAPEDFNAVRDALVEKGYEFVSAD-IKLI 199
Query: 199 PITTIEVDDEAMELNKELIAKLLEL-DDVDAVYTD 232
P TT +D+E + E + LLE DDV VY +
Sbjct: 200 PQTTTVLDNEGQVKSMEKLIDLLEEDDDVQNVYHN 234
>gi|225164120|ref|ZP_03726400.1| protein of unknown function DUF28 [Diplosphaera colitermitum TAV2]
gi|224801255|gb|EEG19571.1| protein of unknown function DUF28 [Diplosphaera colitermitum TAV2]
Length = 240
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 113/216 (52%), Gaps = 18/216 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
K GG +P N L +L KA+E ++P D ++R IK+ + + E + YE YG GGV+
Sbjct: 37 KAGGGDPEGNARLRTLLLKAREANMPVDNIDRAIKKGTGELPGVVYEDITYEAYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+V+V TD TRS VR V GG +A G+V F+F A I +D L+++A
Sbjct: 97 FIVKVTTDNKTRSAQEVRSVFARHGGNLASTGAVAFQFTHAGQFLIASDQTTEDALMEVA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL-- 197
LDAGA+DV+ +E ++V + + T L +AGI E+ +EL
Sbjct: 157 LDAGADDVLT------------SEHGFEVRCDVHVFDKVLTALDKAGIKTES---AELAY 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
+P T+ VD ++L L E+DDV V++++
Sbjct: 202 IPTNTVPVDASVASGIEKLHDALDEIDDVQHVFSNE 237
>gi|433462670|ref|ZP_20420246.1| hypothetical protein D479_13777 [Halobacillus sp. BAB-2008]
gi|432188539|gb|ELK45723.1| hypothetical protein D479_13777 [Halobacillus sp. BAB-2008]
Length = 250
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 123/216 (56%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
K+GG +P +N L ++KA+ ++PKD V+R IK+A+ + + E YE YG GGV
Sbjct: 36 AKQGGGDPETNPPLRLAMDKARANNMPKDNVDRAIKKATGDLDGVHYEEYTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+++V+VLTD R+ A VR G + + G V F F+R+ V++ TDAD++ ++
Sbjct: 96 AVMVKVLTDNKNRTAADVRHAFNKNDGNLGENGCVSFMFQRSGYLVIDRSLTDADEEDMM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
A++AGAE++ +T EDR E Y + ++++ + L+++G F T N
Sbjct: 156 LEAIEAGAEEM--------ETYEDRFEIY----TAPESFSTVKDALKDSGYQFLT-NEVT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T ++D+ +E +LI L + DDV VY +
Sbjct: 203 MIPETYTDLDESGVEKMLKLIDMLEDNDDVQEVYHN 238
>gi|284044632|ref|YP_003394972.1| hypothetical protein Cwoe_3178 [Conexibacter woesei DSM 14684]
gi|283948853|gb|ADB51597.1| protein of unknown function DUF28 [Conexibacter woesei DSM 14684]
Length = 249
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 124/216 (57%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKV-YEVYGYGG 77
++GG +P N LA ++KAK+ +PKD +ER I + + +G +A IE + YE YG GG
Sbjct: 36 AREGGGDPELNATLANAVQKAKDASMPKDNIERAIAKGTGEGADADAIEAILYEGYGPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E L+D R+ A VR ++ GG + +PGSV + F R VV + +D L+
Sbjct: 96 VALLIEALSDNRNRTGADVRHLLSKHGGSLGEPGSVAYLFDRQGVVVVDAERWSEDDLI- 154
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A+DAGA D+ + DED ++V++ + + + T L EAGI + ++
Sbjct: 155 VAIDAGALDI--------EQDED----VFEVLTEPSDLSAVRTALEEAGIEIQNAEVTQ- 201
Query: 198 LPITTIEVD-DEAMELNKELIAKLLELDDVDAVYTD 232
P T + +D D+A +L + LI L E DDV+ V+ +
Sbjct: 202 RPKTRVNLDEDQATKLLR-LIDALDENDDVNEVHAN 236
>gi|167758270|ref|ZP_02430397.1| hypothetical protein CLOSCI_00608 [Clostridium scindens ATCC 35704]
gi|336421715|ref|ZP_08601871.1| hypothetical protein HMPREF0993_01248 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167664167|gb|EDS08297.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
scindens ATCC 35704]
gi|336000186|gb|EGN30339.1| hypothetical protein HMPREF0993_01248 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 243
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 108/193 (55%), Gaps = 17/193 (8%)
Query: 20 VKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG +P +N+ L V+ KAK ++P D +ERNIK+A A E + YE YG G
Sbjct: 36 VKEGGSADPANNSRLRDVIAKAKANNMPNDTIERNIKKADSDANAANYEHITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQL 135
+I+VE LTD R+ + V+ G + PG V F F + VV+ + + D D+L
Sbjct: 96 TAIIVEALTDNKNRTASNVKNAFTKGNGNVGTPGCVSFMFDKKGQIVVDKEEYEGDSDEL 155
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
+ +ALDAGAED +E E+D+ Y++++ ++++ + + EAGIP +
Sbjct: 156 MMLALDAGAEDFVE----EEDS--------YEILTDPEDFSAVRLAMEEAGIPMAAAEVT 203
Query: 196 ELLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 204 -MIPQTYVELTDE 215
>gi|29833374|ref|NP_828008.1| hypothetical protein SAV_6832 [Streptomyces avermitilis MA-4680]
gi|33517123|sp|Q827T9.1|Y6832_STRAW RecName: Full=Probable transcriptional regulatory protein SAV_6832
gi|29610497|dbj|BAC74543.1| hypothetical protein SAV_6832 [Streptomyces avermitilis MA-4680]
Length = 250
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 115/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RTGGADPAGNPTLFDAIQKAKKSSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGNMADPGSVSYLFNRKGVVIVPKGELSEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++VVS + + + T L++AGI +++ + + +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVVSEATDLVAVRTALQDAGIDYDSAD-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|345869213|ref|ZP_08821173.1| YebC/PmpR family DNA-binding regulatory protein [Bizionia
argentinensis JUB59]
gi|344046375|gb|EGV42039.1| YebC/PmpR family DNA-binding regulatory protein [Bizionia
argentinensis JUB59]
Length = 240
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK +++PKD VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKSVNMPKDNVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G++I+VE TD R+VA VR C G + GSV+F F
Sbjct: 73 DKSQGNYKEVIFEGYAPHGIAILVETATDNNMRTVANVRSYFNKCDGSLGTSGSVVFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V +DD + + + + I
Sbjct: 133 HTCNFRIPAEGLDPEELELEFIDFGAEEVF----GDDDG--------ILIYAPFEYFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L I +G E +P T + E + ++L+ +L E DDV VY
Sbjct: 181 QAELESREIEI-LSSGFERIPQVTKTISAEEIADVEKLLERLEEDDDVQNVY 231
>gi|85714398|ref|ZP_01045386.1| hypothetical protein NB311A_15642 [Nitrobacter sp. Nb-311A]
gi|85698845|gb|EAQ36714.1| hypothetical protein NB311A_15642 [Nitrobacter sp. Nb-311A]
Length = 248
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVIAARAENMPKDNIERAIKKASGNDAENYDELRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+++EVLTD R+ + +R GG + + GSV F F R V+ D +L+ A
Sbjct: 96 VIMEVLTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRLGVIEYDPDKGSADDMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV+ E +++ ++ +++ D+ L + F L+
Sbjct: 156 IEAGADDVVS------------GEGGHEIYASQESFRDVAKALED---KFGEARKVALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDD E +LI +L E DDV VY +
Sbjct: 201 KPQNTLAVDDNTGEKLLKLIDQLNEHDDVQNVYAN 235
>gi|379059565|ref|ZP_09850091.1| hypothetical protein SproM1_15934 [Serinicoccus profundi MCCC
1A05965]
Length = 256
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 19/219 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +PT N L ++KAK+ VP D ++R +KR S E G ++ VYE Y GG
Sbjct: 36 ARMGGGDPTGNPTLYDAIQKAKKSSVPNDNIDRAVKRGSGAEAGGASYEALVYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTD---ADKD 133
V++ +E LTD R+V VR + GG MAD GSV + F R+ +VV K + A +D
Sbjct: 96 VALYIECLTDNKNRAVMEVRTALTRNGGSMADSGSVAYLFERKGQVVVPKDQEGGAASED 155
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL+I L++GAE+V ED E ++V+S + + + T L++AG+ +++
Sbjct: 156 SLLEIVLESGAEEV-----------EDAGES-FEVISEAGDVVAVRTALQDAGMDYDSAE 203
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +P + +D + + +I L + DDV VY++
Sbjct: 204 VT-FVPSMQVPLDADGAKKVIRVIDALEDCDDVQNVYSN 241
>gi|398355034|ref|YP_006400498.1| hypothetical protein USDA257_c52160 [Sinorhizobium fredii USDA 257]
gi|390130360|gb|AFL53741.1| UPF0082 protein [Sinorhizobium fredii USDA 257]
Length = 248
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ AK +PKD +ER +K+A+ E + E YE YG GGV+
Sbjct: 36 AKTGLPDPGMNPRLRLAIQNAKAQSMPKDNIERAVKKAAGGDAENYEEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + + D D++++ A
Sbjct: 96 VIVEALTDNRNRTASNVRSTFTKAGGALGETGSVSFSFDRVGEITYTLSAGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGAEDV TDE+ + ++ ++ D++ L G+ E + +
Sbjct: 156 IEAGAEDV--------STDEEG----HTIICGFEDIGDVSKALE--GVLGEAETVKAIWR 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD+E + +LI L + DDV VY++
Sbjct: 202 PQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|227875450|ref|ZP_03993591.1| protein of hypothetical function DUF28 [Mobiluncus mulieris ATCC
35243]
gi|269977298|ref|ZP_06184271.1| DNA-binding regulatory protein, YebC/PmpR family [Mobiluncus
mulieris 28-1]
gi|306818762|ref|ZP_07452484.1| YebC like protein [Mobiluncus mulieris ATCC 35239]
gi|227844004|gb|EEJ54172.1| protein of hypothetical function DUF28 [Mobiluncus mulieris ATCC
35243]
gi|269934601|gb|EEZ91162.1| DNA-binding regulatory protein, YebC/PmpR family [Mobiluncus
mulieris 28-1]
gi|304648448|gb|EFM45751.1| YebC like protein [Mobiluncus mulieris ATCC 35239]
Length = 253
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 16/193 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER +KR S E G + YE YG G
Sbjct: 36 ARTGGGDPAGNPTLFDAIQKAKKSSVPADNIERAVKRGSGAESGGADWQSITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLL 136
V +VE LTD R+V+ VR + GG MAD GSV ++F R V+ + K D D+D++
Sbjct: 96 VGFIVECLTDNKNRAVSEVRTIFSRNGGNMADTGSVSYQFARRGVIEVTKAADLDEDKIF 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ ++AGA+DV ED E + SD + T L+EAGI +++ S+
Sbjct: 156 EAVMEAGADDV-----------EDAGEIFVIETDPSD-LVGVRTALQEAGIDYDSAE-SQ 202
Query: 197 LLPITTIEVDDEA 209
+P +++D E
Sbjct: 203 FVPSVKVDLDLEG 215
>gi|225010724|ref|ZP_03701193.1| protein of unknown function DUF28 [Flavobacteria bacterium
MS024-3C]
gi|225005095|gb|EEG43048.1| protein of unknown function DUF28 [Flavobacteria bacterium
MS024-3C]
Length = 237
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 14/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK +++PKD VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKAVNMPKDNVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K + E ++E Y G++I+VE TD TR+VA +R C G M GSV F F
Sbjct: 73 DKSLGDYKEVLFEGYAPHGIAILVETATDNNTRTVANIRSYFNKCNGNMGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D D ++L +D GAE+V DE+ Y + +++ I
Sbjct: 133 HTCNFRIPAGDLDPEELELELIDFGAEEVF--------VDEEEGILIY---APFESFGAI 181
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L G+ +G E +P T ++ +E ++L+ K+ E DDV VY
Sbjct: 182 QKELESRGLEI-LSSGFERIPQVTKQLTEEEAADVEKLLEKIEEDDDVQNVY 232
>gi|307701103|ref|ZP_07638128.1| DNA-binding regulatory protein, YebC/PmpR family [Mobiluncus
mulieris FB024-16]
gi|307614098|gb|EFN93342.1| DNA-binding regulatory protein, YebC/PmpR family [Mobiluncus
mulieris FB024-16]
Length = 253
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 102/192 (53%), Gaps = 16/192 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER +KR S E G + YE YG GV
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKSSVPADNIERAVKRGSGAESGGADWQSITYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
+VE LTD R+V+ VR + GG MAD GSV ++F R V+ + K D D+D++ +
Sbjct: 97 GFIVECLTDNKNRAVSEVRTIFSRNGGNMADTGSVSYQFARRGVIEVTKAADLDEDKIFE 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
++AGA+DV ED E + SD + T L+EAGI +++ S+
Sbjct: 157 AVMEAGADDV-----------EDAGEIFVIETDPSD-LVGVRTALQEAGIDYDSAE-SQF 203
Query: 198 LPITTIEVDDEA 209
+P +++D E
Sbjct: 204 VPSVKVDLDLEG 215
>gi|157363874|ref|YP_001470641.1| hypothetical protein Tlet_1011 [Thermotoga lettingae TMO]
gi|166919120|sp|A8F5Z3.1|Y1011_THELT RecName: Full=Probable transcriptional regulatory protein Tlet_1011
gi|157314478|gb|ABV33577.1| protein of unknown function DUF28 [Thermotoga lettingae TMO]
Length = 253
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 123/216 (56%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK--GQEAFIEKVYEVYGYGG 77
++GG +P +N+ L +EKAKE ++P++ +E+ IKR + + G E + E +YE YG GG
Sbjct: 36 AREGGGDPETNSRLRTAIEKAKEANMPRENIEKAIKRGTGELEGVE-YQEIIYEAYGPGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD-ADKDQLL 136
V++ + LTD R+ +R V+ GG +AD G+V + F R ++++ A+ ++L+
Sbjct: 95 VALYIRALTDNKNRTAQELRHVLSRHGGSLADLGAVGWIFERKGIISVPRDQVANVEELV 154
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+A+DAGAED+ DD D+ ++ ++ DN + +L + G ++ + G
Sbjct: 155 MMAIDAGAEDI-------DDQDDP-----VRITTSPDNLMSVKEELEKNG--YKAEAGIS 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T++V + E L+ L ++DDV VY++
Sbjct: 201 YVPKNTVQVTGKDAEKILALLNALEDMDDVQDVYSN 236
>gi|386839034|ref|YP_006244092.1| hypothetical protein SHJG_2945 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374099335|gb|AEY88219.1| hypothetical protein SHJG_2945 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451792326|gb|AGF62375.1| hypothetical protein SHJGH_2709 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 250
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 116/214 (54%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RMGGADPEGNPTLYDAIQKAKKSSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D++L
Sbjct: 97 AVLIECLTDNRNRAASEVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDEVLMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+EAGI +++ + +
Sbjct: 157 VLDAGAEEV-------NDLGE-----TFEVISEATDLVAVRTALQEAGIDYDSAE-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E + +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGAKKIFKLIDALEDSDDVQNVFAN 237
>gi|153004475|ref|YP_001378800.1| hypothetical protein Anae109_1612 [Anaeromyxobacter sp. Fw109-5]
gi|152028048|gb|ABS25816.1| protein of unknown function DUF28 [Anaeromyxobacter sp. Fw109-5]
Length = 240
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 124/240 (51%), Gaps = 19/240 (7%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK + W R K + R VK GGPNP +N L L+ A+ ++PKD VE
Sbjct: 8 RKATMFARWNRMAKVFTRISKDIAIAVKSGGPNPDNNPALRRALQNARGANMPKDKVEAA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRAS + Q+A+ +YE YG G++++VE TD + R+VA VR K+ GG + GSV
Sbjct: 68 IKRASGQDQQAYEVVLYEGYGPHGIAVMVETATDNVVRTVANVRMHFKNHGGNLGTSGSV 127
Query: 114 MFKFRRARVVNIKFTDADKDQL-LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
F+FR+ V + D D + LD+ +D G E++ E T E + E+ + S
Sbjct: 128 AFQFRKMGVFRLAPEGLDLDTIELDL-IDHGLEEMGE------GTGE-KGEKQLVIRSAF 179
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ + + E +P + E + T +E+ +E + E++ L + +DV V+ +
Sbjct: 180 ESFGQLQGAIEERKLPLLSAE-LEFVAQTPVELPEEQAKEVLEMVDALEQDEDVQRVFHN 238
>gi|110597084|ref|ZP_01385373.1| Protein of unknown function DUF28 [Chlorobium ferrooxidans DSM
13031]
gi|110341275|gb|EAT59740.1| Protein of unknown function DUF28 [Chlorobium ferrooxidans DSM
13031]
Length = 250
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 116/214 (54%), Gaps = 13/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
K GG +P N L ++ A+ +P D ++R +K+ + E + E YE YG G+
Sbjct: 36 AKMGGGDPNGNPRLRLAIDTARANSMPMDNIQRAVKKGTGELEGVTYDEITYEGYGPAGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E TD R+VA +R ++ G + + GSV + F+R V++ + AD+DQL++I
Sbjct: 96 ALIIETATDNRNRTVADIRHIMSRNNGSLGESGSVAWMFQRKGTVDVLKSAADEDQLMEI 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAG ED+ +D+D + YY V++ D+ L EA I +E + +LL
Sbjct: 156 LLDAGLEDL---------SDDD--DNYYTVITDVRQLEDVKKVLDEAAIAYE-NAKIDLL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P IE++ + E +LI L DD+ AVY++
Sbjct: 204 PENYIELEADDAEKVIKLIDALENNDDIQAVYSN 237
>gi|332298168|ref|YP_004440090.1| hypothetical protein Trebr_1536 [Treponema brennaborense DSM 12168]
gi|332181271|gb|AEE16959.1| UPF0082 protein yeeN [Treponema brennaborense DSM 12168]
Length = 246
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 113/215 (52%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ GG +P SN L + KA+ ++PKD +ER IK+ + E G F EK+YE YG GGV
Sbjct: 36 ARMGGGDPGSNPRLRTAMLKARAANMPKDNIERAIKKGTGELGGAIFEEKLYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+VEVLTD R+ A VR + GG + GSV + F R V+ +D++++
Sbjct: 96 AILVEVLTDNNNRAAANVRNIFSKTGGNLGATGSVAYMFNRKGVIEYDAEAVSEDEVMEA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
AL+AGAED+ V+ED V + + + L+ G +E+ + +
Sbjct: 156 ALEAGAEDI----VSEDGV--------VTVTTDPSAFESVLEALQNKG--YESVSAEVAM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P +D E ++LI +L E DDV VY++
Sbjct: 202 VPDMYSAIDMETATKVQKLIDRLEEDDDVQNVYSN 236
>gi|295134428|ref|YP_003585104.1| hypothetical protein ZPR_2585 [Zunongwangia profunda SM-A87]
gi|294982443|gb|ADF52908.1| conserved hypothetical protein [Zunongwangia profunda SM-A87]
Length = 241
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P +N+ L AV++ AK +++PKD +ER IKRAS
Sbjct: 13 MKRWSAMAKAFTRIGKDIVMAVKEGGPDPDANSKLRAVIQNAKSVNMPKDNIERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + ++E Y G++++VE TD R+VA VR C G + GSV F F
Sbjct: 73 DKSQGDYKIVLFEGYAPHGIAVLVETATDNNNRTVANVRSYFNKCDGNLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V E DED Y + + + I
Sbjct: 133 HTCNFRINAKGLDVEELELEFIDYGAEEVFE--------DEDGIHIY----APFEYFGSI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L I +G E +P T ++ E ++L+ KL E DDV VY
Sbjct: 181 QKELESKNIEI-ISSGFERIPQVTKQLTPEQSADVEKLLEKLEEDDDVQNVY 231
>gi|399022063|ref|ZP_10724142.1| DNA-binding regulatory protein, YebC/PmpR family [Chryseobacterium
sp. CF314]
gi|398085430|gb|EJL76088.1| DNA-binding regulatory protein, YebC/PmpR family [Chryseobacterium
sp. CF314]
Length = 246
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GG +P +N L ++ AK ++PKD VER IK+AS E + E YE YG GGV+
Sbjct: 34 VKAGGSDPEANPALRRCIQNAKGANMPKDNVERAIKKASGTDAENYEEITYEGYGQGGVA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD--ADKDQLLD 137
VE T+ TR+VA VR + G + G + F F R + N+ + D D
Sbjct: 94 FFVECTTNNTTRTVANVRAIFNKFDGNLGKNGELAFIFDRKGIFNLDLSQIKMDWDDFEM 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+D GAED+ D+ E + + +++ ++ KL E GI ++ +EL
Sbjct: 154 EMIDGGAEDI------------DKDEEEVMITTAFEDFGSLSHKLDELGIEVKS---AEL 198
Query: 198 --LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T EV+ E + N +++ + + DDV VY +
Sbjct: 199 QRIPNNTKEVNAEQFKANMKMLERFEDDDDVQNVYHN 235
>gi|375142520|ref|YP_005003169.1| YebC/PmpR family DNA-binding regulatory protein [Mycobacterium
rhodesiae NBB3]
gi|359823141|gb|AEV75954.1| DNA-binding regulatory protein, YebC/PmpR family [Mycobacterium
rhodesiae NBB3]
Length = 251
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++NV + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKNFAKLIKNVEVAARVGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ YE YG GV++++E LTD R+ VR + GG MADPGSV + F R +
Sbjct: 81 ADYQNITYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFSRKGL 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ +D +L L+AGAE++ +D D+ ++++ + + T L
Sbjct: 141 VTLEKNGLTEDDVLTAVLEAGAEEI-------NDLDDS-----FEIICEPTDLVAVRTAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++AGI +E+ S P ++ VD E +L+ L + DDV V+T+
Sbjct: 189 QDAGIDYESAEAS-FQPSVSVPVDLEGARKVLKLVDALEDSDDVQDVFTN 237
>gi|238926804|ref|ZP_04658564.1| protein of hypothetical function DUF28 [Selenomonas flueggei ATCC
43531]
gi|238885336|gb|EEQ48974.1| protein of hypothetical function DUF28 [Selenomonas flueggei ATCC
43531]
Length = 242
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 25/220 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI RA +KG A + E +YE YG
Sbjct: 36 VRMGGADPTGNMRLKLALSKAKANNIPKD----NINRAIQKGLGATEGSNYEEVIYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKD 133
GG ++++++LTD R+ A VR + GG + G V + F++ V + + T D+D
Sbjct: 92 PGGTAVMLDILTDNRNRTAADVRHLFSKYGGNLGQDGCVSWMFKKKAVFVVERDTFDDED 151
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL++ L+AGAED+ +EDD +++++ D Y I T L E GI ET +
Sbjct: 152 ALLELVLEAGAEDM----RSEDDV--------FEIIAEPDAYDAIETVLGEKGI--ETAS 197
Query: 194 GS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT+ + D+ E + LI L + DDV VY++
Sbjct: 198 AEVTMVPDTTVHLVDKDAEKMQTLIDALEDNDDVQNVYSN 237
>gi|429333867|ref|ZP_19214551.1| hypothetical protein CSV86_18497 [Pseudomonas putida CSV86]
gi|428761474|gb|EKX83704.1| hypothetical protein CSV86_18497 [Pseudomonas putida CSV86]
Length = 248
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + K+GG +P SN L L+KA ++ +DI++R I R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAAKQGGGDPASNPRLRLALDKALGANMSRDIIDRAIARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGTAEADNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 175
F R I F + D+D L++ A++A A+DV+ N D + + V ++ ++
Sbjct: 134 FERKG--QISFGEGVDEDALMEAAMEADADDVVS---NGDGS--------FDVFTSFASF 180
Query: 176 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + L AG +D + P T+ E+D + + +LI L +LDDV VY++
Sbjct: 181 YAVRSALEAAGFK-ASDAEIVMQPTTSAELDLDGAQKVLKLIDMLEDLDDVQNVYSN 236
>gi|406672883|ref|ZP_11080108.1| YebC/PmpR family DNA-binding regulatory protein [Bergeyella
zoohelcum CCUG 30536]
gi|405587427|gb|EKB61155.1| YebC/PmpR family DNA-binding regulatory protein [Bergeyella
zoohelcum CCUG 30536]
Length = 246
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P SN L ++ AK ++PKD VER IK+AS E + E YE YG GGV+
Sbjct: 34 VKAGGPDPESNPALRRCIQNAKGANMPKDNVERAIKKASGADAEQYDEITYEGYGQGGVA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD--ADKDQLLD 137
VE T+ TR+VA VR + G + G + F F R + + + D +
Sbjct: 94 FFVECTTNNPTRTVANVRAIFNKMDGNLGKNGELAFIFDRKGIFTLDKSSITMDWEDFEM 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+D GAE++ DTDE+ V + +++ ++ KL E GI ++ +EL
Sbjct: 154 EMIDGGAEEI--------DTDENEV----MVTTAFEDFGALSHKLEELGIEAKS---AEL 198
Query: 198 --LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T EV +E + N +++ K E DDV VY +
Sbjct: 199 QRIPNMTKEVTEEQFKNNMKMLEKFEEDDDVQNVYHN 235
>gi|338730388|ref|YP_004659780.1| hypothetical protein Theth_0596 [Thermotoga thermarum DSM 5069]
gi|335364739|gb|AEH50684.1| protein of unknown function DUF28 [Thermotoga thermarum DSM 5069]
Length = 253
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 119/212 (56%), Gaps = 16/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIV 81
GG NP +N L A +EKA+E +PK+ +E+ IKR + + + A + E +YE Y GGV++
Sbjct: 39 GGGNPETNPRLRAAIEKAREASMPKENIEKAIKRGTGELEGADYQEIIYEAYAPGGVALY 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD-ADKDQLLDIAL 140
+ LTD R+ +R V+ GG +AD G+V + F R V+ + + A+ ++L+ +A+
Sbjct: 99 IRTLTDNKNRTAQELRHVLSRHGGSLADLGAVSWIFERKGVITVPRSQVANVEELMMLAI 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAED+ DD+D+ ++++ D+ + L + G ++++ +P
Sbjct: 159 DAGAEDI-------DDSDDP-----IRIITAPDDLMKVKEVLDQNG--YKSEASISYIPK 204
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T++V + E L+ L ++DDV VY++
Sbjct: 205 NTVKVSGKDAERVLALLNALEDMDDVQEVYSN 236
>gi|95931131|ref|ZP_01313856.1| protein of unknown function DUF28 [Desulfuromonas acetoxidans DSM
684]
gi|95132821|gb|EAT14495.1| protein of unknown function DUF28 [Desulfuromonas acetoxidans DSM
684]
Length = 248
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG + +N L ++KAK ++PKD +ER IK+ + + ++ E E YG GGV+
Sbjct: 37 KIGGGDLEANPRLRTAVDKAKGGNMPKDTIERAIKKGTGDLDGVSYEEGTMEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE++TD TR+VA VR G + GSV F F R ++ I +AD D + +IA
Sbjct: 97 VMVEIMTDNRTRTVADVRHCFTKHNGSLGVDGSVAFLFDRKGLIAIS-NEADFDTIFEIA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+ GAEDV +D E Y+V++ + +T + L E GI FE+ + ++P
Sbjct: 156 LENGAEDV-----------KDEGES-YEVITEPNEFTAVRDALAEQGIEFESAEVT-MIP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+E++ + E +L+ L + DDV VYT+
Sbjct: 203 QNTVELEGKKAEQMLKLMDMLEDNDDVQNVYTN 235
>gi|443628955|ref|ZP_21113292.1| putative transcriptional regulatory protein [Streptomyces
viridochromogenes Tue57]
gi|443337553|gb|ELS51858.1| putative transcriptional regulatory protein [Streptomyces
viridochromogenes Tue57]
Length = 250
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 116/214 (54%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RMGGADPDGNPTLYDAIQKAKKQSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYMFSRKGVVIVPKGELTEDDVLAA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E+ ++V+S + + + T L++AGI +E+ + +
Sbjct: 157 VLDAGAEEV-------NDLGEN-----FEVISEATDLVAVRTALQDAGIDYESAE-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E + +LI L + DDV V+ +
Sbjct: 204 PSVQVELDEEGAKKIFKLIDALEDSDDVQNVFAN 237
>gi|407280037|ref|ZP_11108507.1| hypothetical protein RhP14_26271 [Rhodococcus sp. P14]
Length = 250
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 113/215 (52%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + E G + YE YG G
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGGADWQTITYEGYGPSG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ VR + GG MADPGSV + F R VV ++ +D++L+
Sbjct: 96 VAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGVVVLEKNGRTEDEILE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+ L+AGAE++ D D +++VS + + + T L EAGI +E+ + +
Sbjct: 156 VVLEAGAEEI------NDLGDS------FEIVSEAGDLIAVRTALVEAGIDYESAD-PDF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD E+ +L+ L + DDV VYT+
Sbjct: 203 RASVEVPVDAESARKVFKLVDALEDSDDVQNVYTN 237
>gi|424864685|ref|ZP_18288588.1| hypothetical protein NT02SARS_0353 [SAR86 cluster bacterium SAR86B]
gi|400759431|gb|EJP73613.1| hypothetical protein NT02SARS_0353 [SAR86 cluster bacterium SAR86B]
Length = 245
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 126/234 (53%), Gaps = 20/234 (8%)
Query: 4 KQSCIRGWGRKSYLRNVK---KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 60
+Q RG +R + KGGP+P N L L+KA ++PKD + R I++ S
Sbjct: 16 RQDAKRGKVFTKIIREITVAAKGGPDPADNPRLRLALDKANSENMPKDTITRAIQKGSGT 75
Query: 61 GQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
G+ IE++ +E YG GG++I +E +TD R+VA VR GG + GSV + F +
Sbjct: 76 GETGDIEEITFEGYGPGGIAIYIETVTDNRNRTVAEVRHAFSKFGGNLGTDGSVSYLFNK 135
Query: 120 ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
++++ + +++++D ++ A+D IE ED+ +Y++V++ + I
Sbjct: 136 IGIIHLN-KEFSEEEIMDFVIEYEADDFIE----EDE--------FYEIVTSPSSLHAIV 182
Query: 180 TKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
K++E I ++ N L P TT+ +D+E E +L+ + +LDDV V+T+
Sbjct: 183 DKMKENNI--DSINAELTLRPETTVLIDEEMSEKVIKLMNHMDDLDDVQEVHTN 234
>gi|293604474|ref|ZP_06686879.1| YebC like protein [Achromobacter piechaudii ATCC 43553]
gi|292817055|gb|EFF76131.1| YebC like protein [Achromobacter piechaudii ATCC 43553]
Length = 243
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 16/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
+ GGP+P SN L +KA + ++PKD ++R I+R A +A+ E YE YG GG
Sbjct: 36 ARAGGPDPDSNPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGDAYEEVRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR-ARVVNIKFTDADKDQLLD 137
+++V+ +TD TR+VA VR GG + GSV F F+ + V T DK +++
Sbjct: 96 AVIVDCMTDNRTRTVAEVRHAFAKNGGNLGQEGSVAFMFKHCGQFVFAPGTPEDK--VME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGAEDV TDE E +VV +Y + EAG+ E D G +
Sbjct: 154 AALDAGAEDVT--------TDE---EGVIEVVCAPADYAAVRKAFDEAGLKAEVD-GIVM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ E+ E ++L+ L LDDV VYT
Sbjct: 202 KALNETELAGEDAIKMQKLLDALEGLDDVQEVYT 235
>gi|284032309|ref|YP_003382240.1| hypothetical protein Kfla_4408 [Kribbella flavida DSM 17836]
gi|283811602|gb|ADB33441.1| protein of unknown function DUF28 [Kribbella flavida DSM 17836]
Length = 253
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 19/219 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG + N L ++KAK+ VP D +ER +KR S E G + YE YG G
Sbjct: 36 ARTGGGDLAGNPTLYDAVQKAKKSSVPNDNIERAVKRGSGAEAGGADWQSITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDA---DKD 133
V++++E LTD R+ A VR + GG +ADP SV + F R V+ + K D +D
Sbjct: 96 VAMLIECLTDNRNRAAADVRTAMSRNGGSLADPNSVAYLFNRKGVIVLSKEQDGRTLTED 155
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
L++ L+AGA++V +D E ++V+S + + + T L+EAGI +E+ +
Sbjct: 156 DLMEAVLEAGADEV-------NDLGES-----FEVISEASDLVKVRTALQEAGIDYESAD 203
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
S +P T+E+D E LI L + DDV VY +
Sbjct: 204 AS-FVPSMTVELDAEGANKIFRLIDALEDSDDVQNVYAN 241
>gi|372273405|ref|ZP_09509453.1| hypothetical protein MstaS_20103 [Marinobacterium stanieri S30]
Length = 245
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K+GG NP N L A ++KA ++ KD +E+ I R + G+ + + E YE YG GV
Sbjct: 36 AKEGGGNPEDNPRLRAAVDKALGANMKKDTIEKAIARGAGGGEGDNYDELTYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+VE +TD + R+V+ VR GG + GSV + F + ++ DAD+D +++
Sbjct: 96 AILVECMTDNVNRTVSQVRAAFNKAGGNLGTNGSVAYLFEKKGQISFG-DDADEDAIMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSEL 197
AL+AGA+DV+ NED + V + + D+ L +AG+ P + G +
Sbjct: 155 ALEAGADDVV---TNEDGS--------IDVFAPWQEFMDVKQGLMDAGLEPVYAEVG--M 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TT+++D + +LI L +LDD VY +
Sbjct: 202 IPSTTVDLDVDTGTKALKLIDALEDLDDTQNVYHN 236
>gi|319786203|ref|YP_004145678.1| hypothetical protein Psesu_0589 [Pseudoxanthomonas suwonensis 11-1]
gi|317464715|gb|ADV26447.1| protein of unknown function DUF28 [Pseudoxanthomonas suwonensis
11-1]
Length = 241
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 118/220 (53%), Gaps = 27/220 (12%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
+ GG +P +N L A ++K+ ++ KD++ER IK+A+ + + E+V YE Y GGV+
Sbjct: 34 RAGGGDPANNPRLRAAVDKSLASNMSKDVIERAIKKATGELEGVEYEEVRYEGYAPGGVA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++V+ LTD R+VA VR CGG M GSV F F+R V++ + AD++++ + A
Sbjct: 94 VIVDCLTDNRVRTVADVRHAFSKCGGNMGTEGSVSFMFKRLGVLSYE-AGADEEKITEAA 152
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAG-------IPFETD 192
++ GA+DV+ P ED A VV+ +N+ + L AG I F D
Sbjct: 153 IEGGADDVVVYP-------EDGA---IDVVTAPENFDAVKQALEAAGLAPGYAEITFRAD 202
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
N I V E + ++L+ L +LDDV VY++
Sbjct: 203 N--------DIAVSGETAQQVQKLLHMLEDLDDVQNVYSN 234
>gi|238023201|ref|ZP_04603627.1| hypothetical protein GCWU000324_03128 [Kingella oralis ATCC 51147]
gi|237865584|gb|EEP66724.1| hypothetical protein GCWU000324_03128 [Kingella oralis ATCC 51147]
Length = 241
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 111/216 (51%), Gaps = 15/216 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P SN L ++KA + ++PKD V+R I + + + ++E YE YG GG
Sbjct: 36 AKQGGGDPASNPRLRLAMDKAWDANMPKDNVQRAIDKGTGNLEGVDYVELRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD TR+VA VR GG + G V F F + F + D+D L++
Sbjct: 96 ALMVDCMTDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGY--LVFANVDEDALMEA 153
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDVI DD E +V++ +++ I L +AG E D +
Sbjct: 154 ALEAGAEDVI-----VDD------EGIIEVITAPNDWAAIKAALEQAGFKAE-DGDVTMR 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T E+ E ++LI L LDDV VYT +
Sbjct: 202 AQNTTELSGADAEKMQKLIDALESLDDVQNVYTSAV 237
>gi|305667593|ref|YP_003863880.1| hypothetical protein FB2170_15148 [Maribacter sp. HTCC2170]
gi|88709643|gb|EAR01876.1| hypothetical protein FB2170_15148 [Maribacter sp. HTCC2170]
Length = 236
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK +++PKD VER IKRA+
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPNSNSRLRAVIQNAKSVNMPKDNVERAIKRAT 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K + E ++E Y G++I+VE TD TR+VA VR C G + GSV F F
Sbjct: 73 DKSLGDYKEVLFEGYAPHGIAILVETATDNNTRTVANVRSYFNKCNGNLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V DED Y + +++ I
Sbjct: 133 HTCNFRIPAEGIDPEELELEMIDFGAEEVF--------VDEDGILIY----APFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L + I +G E +P T ++ +E ++L+ K+ E DDV VY
Sbjct: 181 QKELEKREIEI-LSSGFERIPQVTKKLTEEETTDVEKLLEKIEEDDDVQNVY 231
>gi|336434909|ref|ZP_08614628.1| hypothetical protein HMPREF0988_00213 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336002317|gb|EGN32428.1| hypothetical protein HMPREF0988_00213 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 244
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIV 81
GGP+P +N+ L V+ KAK ++P D +ERNIK+A+ +G E + YE YG G +I+
Sbjct: 40 GGPDPANNSRLRDVIAKAKSNNMPNDTIERNIKKAAGEGAGDNYEHITYEGYGPNGTAII 99
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLLDIA 139
V+ LTD R+ + VR G + PG V F F + + D D D+L+ +A
Sbjct: 100 VKTLTDNKNRTASNVRSAFTKGSGNIGTPGCVSFMFDEKGQILVAKEDCEMDADELMMLA 159
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAED E E +++++ +++++ KL EAGI + ++P
Sbjct: 160 LDAGAEDFAEE------------EESFEILTDPADFSEVRLKLEEAGIQMANAEVT-MIP 206
Query: 200 ITTIEVDDEAMELNKELIAKLLEL-DDVDAVYTD 232
T +E+ E N + LLE DDV VY +
Sbjct: 207 QTYVELTKEEDIKNIQKTLDLLEEDDDVQDVYHN 240
>gi|423315669|ref|ZP_17293574.1| YebC/PmpR family DNA-binding regulatory protein [Bergeyella
zoohelcum ATCC 43767]
gi|405585773|gb|EKB59576.1| YebC/PmpR family DNA-binding regulatory protein [Bergeyella
zoohelcum ATCC 43767]
Length = 246
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 28/243 (11%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK S + W + K++ R VK GGP+P SN L ++ AK ++PKD VER
Sbjct: 8 RKASKMARWDKMAKTFSRIGKDIAIAVKAGGPDPESNPALRRCIQNAKGANMPKDNVERA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK+AS E + E YE YG GGV+ VE T+ TR+VA VR + G + G +
Sbjct: 68 IKKASGADAEQYDEITYEGYGQGGVAFFVECTTNNPTRTVANVRAIFNKMDGNLGKNGEL 127
Query: 114 MFKFRRARVVNIKFTD--ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 171
F F R + + + D ++ +D GAE++ DTDE+ V +
Sbjct: 128 AFIFDRKGIFTLDKSSITMDWEEFEMEMIDGGAEEI--------DTDENEV----MVTTA 175
Query: 172 SDNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAV 229
+++ ++ KL + GI ++ +EL +P T EV +E + N +++ K E DDV V
Sbjct: 176 FEDFGALSHKLEKLGIEAKS---AELQRIPNMTKEVTEEQFKNNMKMLEKFEEDDDVQNV 232
Query: 230 YTD 232
Y +
Sbjct: 233 YHN 235
>gi|104773767|ref|YP_618747.1| hypothetical protein Ldb0677 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513771|ref|YP_812677.1| hypothetical protein LBUL_0609 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815391|ref|YP_005851782.1| hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418035513|ref|ZP_12673970.1| hypothetical protein LDBUL1519_00670 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|118574391|sp|Q1GAZ3.1|Y677_LACDA RecName: Full=Probable transcriptional regulatory protein Ldb0677
gi|122275459|sp|Q04BD3.1|Y609_LACDB RecName: Full=Probable transcriptional regulatory protein LBUL_0609
gi|103422848|emb|CAI97506.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093086|gb|ABJ58239.1| hypothetical protein LBUL_0609 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325125428|gb|ADY84758.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354690502|gb|EHE90450.1| hypothetical protein LDBUL1519_00670 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 243
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L ++KA+ ++PKD ++R IK+A E + E YE Y GGV+
Sbjct: 36 AKSGGPDPLGNPRLRLAVDKARAANMPKDNIQRAIKKAEGNSDEHYDEVTYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ ++VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 ILVEALTDNKNRTASSVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
++AG +D+ DD Y++ + + ++T + L +AG SEL
Sbjct: 156 DVMEAGGDDL----QTSDDA--------YEIYTDAKSFTAVRDALEKAGYQLAV---SEL 200
Query: 198 --LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E ++L+ L + DDV VYT
Sbjct: 201 TMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNVYT 236
>gi|381165514|ref|ZP_09874744.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
azurea NA-128]
gi|418463641|ref|ZP_13034637.1| hypothetical protein SZMC14600_21778 [Saccharomonospora azurea SZMC
14600]
gi|359732124|gb|EHK81145.1| hypothetical protein SZMC14600_21778 [Saccharomonospora azurea SZMC
14600]
gi|379257419|gb|EHY91345.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
azurea NA-128]
Length = 249
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV--YEVYGYGG 77
+ GG +P N L ++KAK+ VP+D +ER KR + + + YE Y GG
Sbjct: 36 ARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGAEWQTITYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ + VR + GG +ADPGSV + F R VV + +D +L
Sbjct: 96 VAVLIECLTDNKNRAASEVRTALSRNGGSLADPGSVSYLFNRKGVVIMPKNGLSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V + N Y+++S + + + T L+EAG +E+ + S
Sbjct: 156 AVLDAGAEEVNDLGDN------------YEIISEAGDMVAVRTALQEAGYDYESADMS-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP ++ +D E LI L + DDV VY++
Sbjct: 203 LPTVSVPLDAENARKVFRLIDALEDCDDVQNVYSN 237
>gi|311105296|ref|YP_003978149.1| hypothetical protein AXYL_02110 [Achromobacter xylosoxidans A8]
gi|310759985|gb|ADP15434.1| hypothetical protein AXYL_02110 [Achromobacter xylosoxidans A8]
Length = 243
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 114/216 (52%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
+ GGP+P SN L +KA + ++PKD ++R I+R A EA+ E YE YG GG
Sbjct: 36 ARAGGPDPDSNPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGEAYEEVRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR-ARVVNIKFTDADKDQLLD 137
+++V+ +TD TR+VA VR GG + GSV F F+ + V T DK +++
Sbjct: 96 AVIVDCMTDNRTRTVAEVRHAFAKNGGNLGQEGSVAFMFKHCGQFVFAPGTSEDK--VME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAEDV TDE E +VV +Y + + AG+ E D G +
Sbjct: 154 AALEAGAEDVT--------TDE---EGVIEVVCAPADYAAVRSAFDAAGLKAEVD-GIVM 201
Query: 198 LPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
+ E+ E A+++ K L+ L LDDV VYT+
Sbjct: 202 KALNETELAGEDAIKMQK-LLDALEGLDDVQEVYTN 236
>gi|456062822|ref|YP_007501792.1| hypothetical protein D521_0488 [beta proteobacterium CB]
gi|455440119|gb|AGG33057.1| hypothetical protein D521_0488 [beta proteobacterium CB]
Length = 239
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K GG + +N L ++KAK+ ++P D V+R I+R + + E++ YE YG G
Sbjct: 36 AKLGGGDIATNPRLRLAIDKAKDANMPNDNVQRAIQRGTGSLEGVNYEEIRYEGYGLNGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ LTD TR+VA VR GG M GSV F F+ + I ++DQL++I
Sbjct: 96 AIIVDCLTDNRTRTVAEVRHAFAKNGGNMGAEGSVAFMFKHCGQM-IFAPGTNEDQLMEI 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
ALDAGAEDVI T ED + +V++ ++ + L +AG+ E + +
Sbjct: 155 ALDAGAEDVI--------THEDGS---LEVLTPVPDFPRVQDVLIQAGLKAEIATVT-MR 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T E + E E ++L+ L LDDV V+T+
Sbjct: 203 PETETEFEGEQAESMQKLLDALENLDDVQEVFTN 236
>gi|386851478|ref|YP_006269491.1| hypothetical protein ACPL_6541 [Actinoplanes sp. SE50/110]
gi|359838982|gb|AEV87423.1| uncharacterized protein [Actinoplanes sp. SE50/110]
Length = 250
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 15/212 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P+ N L ++KAK+ VP D ++R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPSGNPTLYDAIQKAKKSSVPNDNIDRAVKRGSGLEAGGADWQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E LTD R+ VR + G AD GSV + F R VV + + +D L+
Sbjct: 97 AILIECLTDNRNRAATEVRTRLTRNHGTFADAGSVSYLFNRKGVVIVPKGELTEDDLMLA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAE++ D D ++VVS + + T L+ AGI +++ S L+
Sbjct: 157 VLEAGAEEI------NDLGDS------FEVVSEPTDLVAVRTALQSAGIDYDSAE-SSLV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P T+EVD++A +LI L + DDV +Y
Sbjct: 204 PTMTVEVDEDAARKVFKLIDALEDCDDVQNIY 235
>gi|298209067|ref|YP_003717246.1| hypothetical protein CA2559_12523 [Croceibacter atlanticus
HTCC2559]
gi|83848994|gb|EAP86863.1| hypothetical protein CA2559_12523 [Croceibacter atlanticus
HTCC2559]
Length = 248
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 12/216 (5%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK +++PKD VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNSRLRAVIQNAKSVNMPKDNVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G+++++E TD TR+VA VR G + GSV+F F
Sbjct: 73 DKSQGDYKEVIFEGYAQHGIAVLIETATDNNTRTVANVRAAFNKTDGNLGTSGSVVFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVV---STSDNY 175
IK + D ++L +D G E++ E DTDE+ KV+ + +++
Sbjct: 133 HTCNFKIKGDNLDLEELELELIDFGVEEIFE------DTDENEQGETQKVIMIYAPFESF 186
Query: 176 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAME 211
+I L I +G E +P T ++ E E
Sbjct: 187 GNIQGYLEANNIEI-ISSGFERIPQVTKKLTPEQQE 221
>gi|42518829|ref|NP_964759.1| hypothetical protein LJ0904 [Lactobacillus johnsonii NCC 533]
gi|227889668|ref|ZP_04007473.1| protein of hypothetical function DUF28 [Lactobacillus johnsonii
ATCC 33200]
gi|268319775|ref|YP_003293431.1| hypothetical protein FI9785_1304 [Lactobacillus johnsonii FI9785]
gi|385826178|ref|YP_005862520.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|417837868|ref|ZP_12484106.1| hypothetical protein PF01_00971 [Lactobacillus johnsonii pf01]
gi|49036509|sp|P62037.1|Y904_LACJO RecName: Full=Probable transcriptional regulatory protein LJ_0904
gi|41583115|gb|AAS08725.1| hypothetical protein LJ_0904 [Lactobacillus johnsonii NCC 533]
gi|227849811|gb|EEJ59897.1| protein of hypothetical function DUF28 [Lactobacillus johnsonii
ATCC 33200]
gi|262398150|emb|CAX67164.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
johnsonii FI9785]
gi|329667622|gb|AEB93570.1| hypothetical protein LJP_1248c [Lactobacillus johnsonii DPC 6026]
gi|338761411|gb|EGP12680.1| hypothetical protein PF01_00971 [Lactobacillus johnsonii pf01]
Length = 243
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 18/232 (7%)
Query: 3 RKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ 62
++ + R+ Y+ K GGP+P+ N L V++KA+ ++PK +ER IK+A
Sbjct: 20 KRGKVFQKLSREIYMA-AKSGGPDPSGNPTLRMVMDKARAANMPKTNIERAIKKAEGNSD 78
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR- 121
E + E YE Y GGV+++VE LTD R+ + VR GG + GSV + F R
Sbjct: 79 EHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGY 138
Query: 122 -VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITT 180
V++ TDAD+DQ+L +DAG +D+ +T +D +++ + +T +
Sbjct: 139 LVIDRSTTDADEDQVLLDVMDAGGDDL--------ETSDDA----FEIYTDPKQFTAVRD 186
Query: 181 KLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
L +AG ++ N ++P T V + E LI L + DDV VYT
Sbjct: 187 ALEKAG--YKLANAELTMIPQNTTPVPADKKEQFAHLIDALEDNDDVSNVYT 236
>gi|284035162|ref|YP_003385092.1| hypothetical protein Slin_0228 [Spirosoma linguale DSM 74]
gi|283814455|gb|ADB36293.1| protein of unknown function DUF28 [Spirosoma linguale DSM 74]
Length = 255
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 120/239 (50%), Gaps = 20/239 (8%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK ++ WG+ K++ R VK GGP+P SN L A+++ AK ++PK+ V+R
Sbjct: 26 RKARKMKRWGQMAKTFTRIGKDIVMAVKSGGPDPDSNGRLRAIIQNAKAANMPKENVDRA 85
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK+AS K QE + E VYE Y G+++V+E TD R+VA VR + GG + G +
Sbjct: 86 IKKASSKEQEDYKEIVYEAYAPHGIALVIETATDNHNRTVANVRSYLNKLGGSLGTQGML 145
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F R V I D+++L +D G ++V + DE+ + Y +
Sbjct: 146 DFMFDRKSVFRITAEGIDQEELELELIDVGGDEV--------EFDEEAGQ--YVIYGEFT 195
Query: 174 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ I L E G + E +P E+ DE + ++LI ++ E DDV VY +
Sbjct: 196 AFGSIQKFLEEKGYEIKQAE-FERIPNDYKELTDEEVADVEKLIERIEEDDDVQMVYHN 253
>gi|406037685|ref|ZP_11045049.1| hypothetical protein AparD1_12189 [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 249
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ R Y+R + K GG +P SN L AV+EKA +++ +D + R ++R A
Sbjct: 16 KQDASRAKVFTKYIREIVTAAKLGGGDPASNPRLRAVIEKALSVNMTRDAINRAVQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ E E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNEDLNEVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFSKNNGNLGTSGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++D+AL+AGAED+ V+ED V++T +++ D
Sbjct: 136 KRG--EISFEDVSLEDKIMDVALEAGAEDI---EVSEDG---------ILVITTPESFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I +LDDV VYT+
Sbjct: 182 VQDALNAAGL--KSDNAEVVMSPSTKAEITDIDQAKQIMK-MIDMFEDLDDVQNVYTN 236
>gi|418029141|ref|ZP_12667689.1| hypothetical protein LDBUL1632_00483 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354690859|gb|EHE90801.1| hypothetical protein LDBUL1632_00483 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 243
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L ++KA+ ++PKD ++R IK+A E + E YE Y GGV+
Sbjct: 36 AKSGGPDPLGNPRLRLAVDKARAANMPKDNIQRAIKKAEGNSDEHYDEVTYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I+VE LTD R+ ++VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 ILVEALTDNKNRTASSVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
++AG +D+ DD Y++ + + ++T + L +AG SEL
Sbjct: 156 DVMEAGGDDL----QTSDDA--------YEIYTDAKSFTAVRDALEKAGYKLAV---SEL 200
Query: 198 --LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E ++L+ L + DDV VYT
Sbjct: 201 TMVPQNTTPVPADKKEQFEKLVDALEDDDDVSNVYT 236
>gi|303231617|ref|ZP_07318341.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica ACS-049-V-Sch6]
gi|302513734|gb|EFL55752.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica ACS-049-V-Sch6]
Length = 245
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 110/201 (54%), Gaps = 23/201 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-----QEAFIEKVYEVYG 74
+ GG +PT N L L+KA+E ++PKD NI+RA +KG A+ E VYE YG
Sbjct: 36 ARMGGADPTGNMRLKLALQKARENNIPKD----NIQRAIDKGVGATDMNAYEEIVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ VEV+TD R+ A VR GG + + G V + F+ V I D+D+
Sbjct: 92 PAGVAVTVEVMTDNRNRAAADVRHAFSKQGGNLGESGCVGWMFKSKGVFVIDKEGHDEDE 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L +ALDAGAED+ EDD +++ +T ++Y + L +AGI E
Sbjct: 152 LTLLALDAGAEDLKA----EDDV--------FEIYTTPEDYDAVEQALADAGIETEVAKI 199
Query: 195 SELLPITTIEVD-DEAMELNK 214
+ ++P TTIE+ D+A+++ K
Sbjct: 200 T-MIPDTTIELSGDDAVKMQK 219
>gi|238916834|ref|YP_002930351.1| hypothetical protein EUBELI_00902 [Eubacterium eligens ATCC 27750]
gi|259710169|sp|C4Z5P5.1|Y902_EUBE2 RecName: Full=Probable transcriptional regulatory protein
EUBELI_00902
gi|238872194|gb|ACR71904.1| glucose-1-phosphate adenylyltransferase [Eubacterium eligens ATCC
27750]
Length = 247
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK+GGP+ +N+ L V+ K K ++P D ++R IK+A+ + YE Y
Sbjct: 30 KELMIAVKEGGPDVNNNSKLRQVVAKCKAANMPNDTIDRAIKKAASNDMSNYESVTYEGY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF--RRARVVNIKFTDAD 131
G G +I+VE LTD R+ + +R GG + PG V F F + +V+ + D
Sbjct: 90 GPNGTAIIVEALTDNRNRAASNIRSAFTKGGGNVGTPGCVSFMFDNKGQMIVDKEEYTGD 149
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
D+L+ +ALDAGA+D E E Y+++++ + + + L +AG+ F +
Sbjct: 150 ADELMMLALDAGADDFNEE------------EDCYEILTSPEEFDAVNQALADAGVTFAS 197
Query: 192 DNGSELLPITTIEV--DDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P TT+++ +D+ ++N+ ++ L E DDV VY +
Sbjct: 198 AEVT-MIPQTTVDLTSEDDIKKMNR-ILGLLDEDDDVQNVYHN 238
>gi|116629905|ref|YP_815077.1| hypothetical protein LGAS_1276 [Lactobacillus gasseri ATCC 33323]
gi|238853649|ref|ZP_04644017.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282851506|ref|ZP_06260871.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
gasseri 224-1]
gi|311110459|ref|ZP_07711856.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
gi|420148474|ref|ZP_14655742.1| Putative transcriptional regulatory protein [Lactobacillus gasseri
CECT 5714]
gi|122273157|sp|Q042I3.1|Y1276_LACGA RecName: Full=Probable transcriptional regulatory protein LGAS_1276
gi|116095487|gb|ABJ60639.1| hypothetical protein LGAS_1276 [Lactobacillus gasseri ATCC 33323]
gi|238833687|gb|EEQ25956.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282557474|gb|EFB63071.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
gasseri 224-1]
gi|311065613|gb|EFQ45953.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
gi|398400026|gb|EJN53622.1| Putative transcriptional regulatory protein [Lactobacillus gasseri
CECT 5714]
Length = 243
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 18/232 (7%)
Query: 3 RKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ 62
++ + R+ Y+ K GGP+P+ N L V++KA+ ++PK +ER IK+A
Sbjct: 20 KRGKVFQKLSREIYMA-AKSGGPDPSGNPTLRMVMDKARAANMPKTNIERAIKKAEGNSD 78
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR- 121
E + E YE Y GGV+++VE LTD R+ + VR GG + GSV + F R
Sbjct: 79 EHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGY 138
Query: 122 -VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITT 180
V++ TDAD+DQ+L +DAG +D+ +T +D +++ + +T +
Sbjct: 139 IVIDRSTTDADEDQVLLDVMDAGGDDL--------ETSDDA----FEIYTDPKQFTAVRD 186
Query: 181 KLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
L +AG ++ N ++P T V + E LI L + DDV VYT
Sbjct: 187 ALEKAG--YKLANAELTMIPQNTTPVPADKKEQFTHLIDALEDNDDVSNVYT 236
>gi|374307553|ref|YP_005053984.1| glucose-1-phosphate adenylyltransferase [Filifactor alocis ATCC
35896]
gi|291166435|gb|EFE28481.1| glucose-1-phosphate adenylyltransferase [Filifactor alocis ATCC
35896]
Length = 237
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-QEAFIEKVYEVYGYGGV 78
VK+GGP+P N L +EKAK +++P D +ER IK+ + G E F VYE YG GGV
Sbjct: 33 VKEGGPDPEYNASLKTAIEKAKAMNMPNDNIERAIKKGTGAGDSENFESIVYEGYGPGGV 92
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFT-DADKDQLLD 137
++++E LTD R+ VR + GG + G V F F R ++ IK + D +D L++
Sbjct: 93 AMIIETLTDNKNRTAGNVRYYLDKNGGNLGTSGCVSFMFDRKGIILIKKSDDISEDSLME 152
Query: 138 IALDAGAEDVI 148
+AL+AGAED +
Sbjct: 153 VALEAGAEDFL 163
>gi|269126342|ref|YP_003299712.1| hypothetical protein Tcur_2108 [Thermomonospora curvata DSM 43183]
gi|268311300|gb|ACY97674.1| protein of unknown function DUF28 [Thermomonospora curvata DSM
43183]
Length = 249
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P +N L + KAK+ VP D +ER +R + E G + +YE Y GGV
Sbjct: 37 RTGGGDPDANPTLYDAIYKAKKNSVPNDNIERARRRGAGEEAGGADWQTVMYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR V GG MA+PGSV + F R ++ + D +D ++
Sbjct: 97 ALLIECLTDNRNRAASEVRTAVTRNGGSMAEPGSVSYLFNRKGIIIVPKKDVTEDDVMMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E +VVS + + T L+EAGI +E+ ++ +
Sbjct: 157 VLDAGAEEV-------NDLGES-----LEVVSEPGDLVAVRTALQEAGIDYESAE-AKWV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ +D+E + LI L + DDV V+ +
Sbjct: 204 PSVSVPLDEETAKKVFRLIEALEDSDDVQEVFAN 237
>gi|193212194|ref|YP_001998147.1| hypothetical protein Cpar_0525 [Chlorobaculum parvum NCIB 8327]
gi|226707685|sp|B3QLZ4.1|Y525_CHLP8 RecName: Full=Probable transcriptional regulatory protein Cpar_0525
gi|193085671|gb|ACF10947.1| protein of unknown function DUF28 [Chlorobaculum parvum NCIB 8327]
Length = 251
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 113/214 (52%), Gaps = 13/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K GG +P+ N L ++ A+ +P D ++R IK+ + + + A E++ YE YG GG+
Sbjct: 36 AKMGGGDPSGNPRLRLAIDTARANSMPMDNIQRAIKKGTGELEGATYEEITYEGYGPGGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E TD R+VA +R ++ GG + + GSV + F R + + + +D L+++
Sbjct: 96 AIIIETATDNRNRTVADIRHLMSRSGGSLGENGSVGWMFNRKGSIEVPKSAISEDDLMEL 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAG E++ E E+YY V++ + + L EA IPFE +++
Sbjct: 156 LLDAGLEEL-----------ESDDEQYYTVLTDVKDLEPVKKALEEAEIPFENAK-MDMI 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D E +LI L DD AVY++
Sbjct: 204 PDNYVELDVEDARKALKLIDALENSDDAQAVYSN 237
>gi|373957475|ref|ZP_09617435.1| UPF0082 protein yeeN [Mucilaginibacter paludis DSM 18603]
gi|373894075|gb|EHQ29972.1| UPF0082 protein yeeN [Mucilaginibacter paludis DSM 18603]
Length = 241
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 121/240 (50%), Gaps = 19/240 (7%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK+ + W + K + VK GGP+P +N+ L V++ +K +++PKD V+
Sbjct: 8 RKERKFKRWAKMAIQFTRLGKEIVMAVKDGGPDPDTNSRLRTVIQNSKAVNMPKDRVDAA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRAS K + + E VYE Y GV ++VE TD R+VA VR GG + GS+
Sbjct: 68 IKRASNKDESNYEELVYEGYAPHGVPVLVETATDNTNRTVANVRSYFTKTGGSLGKTGSL 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS- 172
F F R + + D D ++L +DAG E++ + D+ D A V T+
Sbjct: 128 DFIFSRKSIFRFEPADHDLEELEFELIDAGLEELY---IETDENGHDIA-----VAQTAF 179
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ + L E GI ++ + T +++A ++ K LI KL E DDV AVY +
Sbjct: 180 EDFGKMQKALEEKGIEVKSAKLERIAQSHTKVTEEQAADVMK-LIDKLEEDDDVQAVYHN 238
>gi|220932072|ref|YP_002508980.1| hypothetical protein Hore_12350 [Halothermothrix orenii H 168]
gi|259645757|sp|B8CXG6.1|Y1235_HALOH RecName: Full=Probable transcriptional regulatory protein
Hore_12350
gi|219993382|gb|ACL69985.1| conserved hypothetical protein TIGR01033 [Halothermothrix orenii H
168]
Length = 253
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 123/217 (56%), Gaps = 17/217 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGV 78
++GG +P N L ++KAK+ ++P D +ER IKR + + + EK VYE YG GGV
Sbjct: 36 AREGGGDPEMNPDLRLAIQKAKDNNMPNDNIERAIKRGTGELEGVKYEKFVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
++ +E+++D R+ A +R V+ GG + + G V MFK R +V++ +D D+D+L+
Sbjct: 96 ALYLELMSDNRNRTAAEIRHVLSKNGGNLGESGCVSWMFKRRGQLIVDLNESDFDEDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
AL+AGAEDV V ED+ + + ++ ++ +L E GI F + + +
Sbjct: 156 LEALEAGAEDV----VTEDN--------LLTIYTDPSDFEEVRKQLEEQGIKFSSADIA- 202
Query: 197 LLPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 232
++P + VDD++ +L+ L + DDV VY++
Sbjct: 203 MVPENNVNVDDKSTAKKVLKLMDALEDHDDVQEVYSN 239
>gi|295114114|emb|CBL32751.1| conserved hypothetical protein TIGR01033 [Enterococcus sp. 7L76]
Length = 242
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GGP+P N L ++KAK ++P D + R IK+AS G+ E + E YE YG GGV
Sbjct: 36 AKAGGPDPAMNPALRLAVDKAKSANMPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLL 136
+++V LTD R+ VR GG + + GSV + F R + IK D ++D +L
Sbjct: 96 AVLVHALTDNRNRTATNVRVAFTRNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ L+AG ED+ P +++ + +++T + L +AG +
Sbjct: 156 EVVLEAGGEDLETSP------------EVFEIYTAPEDFTAVRDALEQAGYSLAQAELT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T + +++E + L+ KL + DDV V+T
Sbjct: 203 MVPQTLLTLNEEQKAQLERLVDKLEDDDDVSEVFT 237
>gi|389571390|ref|ZP_10161486.1| hypothetical protein BAME_00550 [Bacillus sp. M 2-6]
gi|407979230|ref|ZP_11160049.1| hypothetical protein BA1_08511 [Bacillus sp. HYC-10]
gi|388428951|gb|EIL86740.1| hypothetical protein BAME_00550 [Bacillus sp. M 2-6]
gi|407414158|gb|EKF35819.1| hypothetical protein BA1_08511 [Bacillus sp. HYC-10]
Length = 239
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G PNP SN L VLE+AK VPK IV+R I++A +E F E Y
Sbjct: 26 FGREIYVA-AKQGEPNPESNQALRFVLERAKTYSVPKHIVDRAIEKAKGGAEENFDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G ++V+ LT+ + R+ + VR GG M GSV + F + V+ ++
Sbjct: 85 EGFGPNGSMVIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDQTAVIGVEGKSE 144
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
++ L + D D++E EDDT V + D + + ++AG+
Sbjct: 145 EETLELLMEADIDVRDIME----EDDT--------VIVYAEPDQFHQVQEAFKQAGVEEF 192
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +LP + +DDE+ ++LI L EL+DV VY +
Sbjct: 193 TVAEITMLPQNEVTLDDESKAQFEKLIDVLEELEDVQQVYHN 234
>gi|386822100|ref|ZP_10109315.1| DNA-binding regulatory protein, YebC/PmpR family [Joostella marina
DSM 19592]
gi|386423346|gb|EIJ37177.1| DNA-binding regulatory protein, YebC/PmpR family [Joostella marina
DSM 19592]
Length = 239
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN L AV++ AK +++PKD VER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDSNARLRAVIQNAKAINMPKDNVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K E + E ++E Y G++I+VE TD R+VA +R C G + GSV F F
Sbjct: 73 DKNTEDYKEVLFEGYAPHGIAILVETATDNNNRTVANIRSYFNKCNGSLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V DED Y + +++ I
Sbjct: 133 HTCNFRIPAEGIDPEELELEMIDFGAEEVF--------ADEDGILIY----APFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L I +G E +P T ++ + + ++L+ K+ E DDV VY
Sbjct: 181 QKELESRNIEI-LSSGFERIPQVTKKLSGDDIADVEKLLEKIEEDDDVQNVY 231
>gi|383935764|ref|ZP_09989197.1| UPF0082 protein [Rheinheimera nanhaiensis E407-8]
gi|383703083|dbj|GAB59288.1| UPF0082 protein [Rheinheimera nanhaiensis E407-8]
Length = 247
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 112/210 (53%), Gaps = 16/210 (7%)
Query: 25 PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGVSIVVE 83
P+ ++N L ++KA ++ +D ++R IKR + + E + E VYE YG GGV+++VE
Sbjct: 40 PDISANPRLRLAVDKALSENMTRDTIDRAIKRGAGASEGENYDELVYEGYGPGGVAVIVE 99
Query: 84 VLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG 143
+TD R+VA VR GG + GSV + F R R V + D+D L+D AL+AG
Sbjct: 100 TMTDNHKRTVADVRHAFTKAGGSLGTTGSVAYLFSR-RGVLLFAPGVDEDALMDAALEAG 158
Query: 144 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLPITT 202
AED++ N DD +V++ ++ Y D+ L AG F DN L+P +
Sbjct: 159 AEDIM----NHDDGS-------IEVLTAAEQYNDVKDALAAAG--FNADNSEVTLIPASR 205
Query: 203 IEVDDEAMELNKELIAKLLELDDVDAVYTD 232
EV E +L+ +L + DDV VY +
Sbjct: 206 CEVTAEHAAAFFKLLDQLEDSDDVQNVYHN 235
>gi|227823323|ref|YP_002827295.1| hypothetical protein NGR_c27950 [Sinorhizobium fredii NGR234]
gi|254801469|sp|C3MIH9.1|Y2795_RHISN RecName: Full=Probable transcriptional regulatory protein
NGR_c27950
gi|227342324|gb|ACP26542.1| UPF0082 protein [Sinorhizobium fredii NGR234]
Length = 248
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ AK +PKD +ER +K+A+ E + E YE YG GGV+
Sbjct: 36 AKSGMPDPAMNPRLRLAIQNAKAQSMPKDNIERAVKKAAGGDAENYEEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR + GG + + GSV F F R + + D D++++ A
Sbjct: 96 VIVEALTDNRNRTASNVRSMFTKAGGALGETGSVSFSFDRVGEITYTLSAGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
+++GA+DV TDED + ++ + D++ L G+ E + +
Sbjct: 156 IESGADDVT--------TDEDG----HTILCGFEEIGDVSKALE--GVLGEAETVKAIWK 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD+E + +LI L + DDV VY++
Sbjct: 202 PQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|149914396|ref|ZP_01902927.1| hypothetical protein RAZWK3B_20386 [Roseobacter sp. AzwK-3b]
gi|149811915|gb|EDM71748.1| hypothetical protein RAZWK3B_20386 [Roseobacter sp. AzwK-3b]
Length = 249
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L +++AK + VPKD++ER IK++ + + E YE YG GGV+
Sbjct: 36 AKMGDPDPEKNPRLRMAVKEAKAVSVPKDVIERAIKKSQAGEGDDYEEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE +TD R+ + VR GG + + GSV F F R ++ D D ++ A
Sbjct: 96 VIVEAMTDNRNRTASNVRSTFTKHGGNLGETGSVAFMFERKGEISYPAEAGDADTVMMAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV + +E + V + D++T L EA + P
Sbjct: 156 IEAGAEDV------------ESSEEGHTVWCADTDLNDVSTAL-EAELGESASTRLAWRP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TT E+D E M+ +L+ L + DDV V T+
Sbjct: 203 ATTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 235
>gi|429195331|ref|ZP_19187369.1| DNA-binding regulatory protein, YebC/PmpR family [Streptomyces
ipomoeae 91-03]
gi|428668968|gb|EKX67953.1| DNA-binding regulatory protein, YebC/PmpR family [Streptomyces
ipomoeae 91-03]
Length = 250
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RMGGADPDGNPTLYDAIQKAKKSSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+EAGI +++ + +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVLSEATDLVAVRTALQEAGIDYDSAE-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P IE+D+E + +LI L + DDV V+ +
Sbjct: 204 PTMQIELDEEGAKKIFKLIDALEDSDDVQNVFAN 237
>gi|399923832|ref|ZP_10781190.1| hypothetical protein Prhi1_01255 [Peptoniphilus rhinitidis 1-13]
Length = 241
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 112/215 (52%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEVYGYGGV 78
K+GG +P N L ++KAK ++P D ++R I +A + F E VYE YG GGV
Sbjct: 36 AKEGGLDPDYNPSLKVAIDKAKAENMPNDNIDRAIAKAGGGDNDDNFEEIVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V LTD R+ VR + G + PG V F F + + + D+D+ I
Sbjct: 96 AVMVNCLTDNRNRTAPEVRHIFDKYSGNLGQPGCVSFMFDKKGSLGVLKEGLDEDEFTLI 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETDNGSEL 197
A+DAGAEDVI DR E +++++ ++Y ++ L E+G F E+D
Sbjct: 156 AIDAGAEDVI-----------DRGEA-FEIITEPEDYHNVRKTLEESGRSFVESD--ITF 201
Query: 198 LPITTIEVDDEAMELNKE-LIAKLLELDDVDAVYT 231
+P TT E+ DE N + LI L + DDV VYT
Sbjct: 202 IPQTTTELTDEDDIKNMDKLIDALEDNDDVTDVYT 236
>gi|225620450|ref|YP_002721707.1| hypothetical protein BHWA1_01533 [Brachyspira hyodysenteriae WA1]
gi|384207809|ref|YP_005593529.1| hypothetical protein Bint_0315 [Brachyspira intermedia PWS/A]
gi|254800549|sp|C0R1L5.1|Y1533_BRAHW RecName: Full=Probable transcriptional regulatory protein
BHWA1_01533
gi|225215269|gb|ACN84003.1| conserved hypothetical protein [Brachyspira hyodysenteriae WA1]
gi|343385459|gb|AEM20949.1| conserved hypothetical protein [Brachyspira intermedia PWS/A]
Length = 247
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGG-PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG P+P N L V+ KAK ++P D ++R IKR + G+ A IE++ YE Y GG
Sbjct: 36 VKEGGSPDPDQNARLRMVIVKAKGTNMPNDNIDRAIKRGAGAGEGANIEEMSYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I+V+V TD R+ A +R + GG +A+ G+V ++F++ VV I ++ L+D
Sbjct: 96 VAIIVDVATDNKNRTAAEIRSIFSKNGGNLAENGAVSWQFKKKAVVMIPAAGNTEESLMD 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
I LDAGAED+ ++ E + + + + I L+ GI E+ +
Sbjct: 156 IVLDAGAEDI------------EQDEEVFTITGPMETLSSIVDALKAKGIEPESAEIVRV 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +++A ++ K +I + DDV AV T+
Sbjct: 204 ADNTMTIAENDAKKVMK-IIGLFEDHDDVSAVATN 237
>gi|163756058|ref|ZP_02163174.1| hypothetical protein KAOT1_09341 [Kordia algicida OT-1]
gi|161323932|gb|EDP95265.1| hypothetical protein KAOT1_09341 [Kordia algicida OT-1]
Length = 236
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGPNP +N+ L AV++ AK ++PKD VER IK+AS
Sbjct: 13 MKRWSAMAKTFTRIGKDIVMAVKEGGPNPDTNSRLRAVIQNAKAANMPKDNVERAIKKAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K E + E ++E YG G++I+VE TD R+VA VR C G + GSV F F
Sbjct: 73 DKNTENYKEVLFEGYGPHGIAILVETATDNNNRTVANVRSYFNKCDGSLGTQGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D G E+V D+D Y +++ I
Sbjct: 133 HTCNFRIPAEGQDAEELELEFIDFGVEEVF--------ADDDGILLY----GPFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L I +G E +P T +++E ++L+ KL E DDV VY
Sbjct: 181 QKELENREIEI-LSSGFERIPQVTKPLNEEETADIEKLLEKLEEDDDVQNVY 231
>gi|419759890|ref|ZP_14286175.1| hypothetical protein H17ap60334_03130 [Thermosipho africanus
H17ap60334]
gi|407514929|gb|EKF49715.1| hypothetical protein H17ap60334_03130 [Thermosipho africanus
H17ap60334]
Length = 252
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 118/214 (55%), Gaps = 17/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
K+GG +P +N L AVLE+A+ ++PKD +E++IK+ + + + + E +YE Y GV+
Sbjct: 37 KEGGGDPETNPRLRAVLERARAANMPKDTIEKSIKKGTGELEGVDYQEIIYEAYAPAGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLDI 138
+ + +TD R+ +R ++ GG +A+ GSV + F R ++ I K AD ++ +
Sbjct: 97 LYIYAMTDNKNRTAQELRHLLSKHGGSLAESGSVAWLFERKGIIEIPKEKIADFEEFAMV 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A+DAGAED+I EDD +V++ D T++ KL E G FE + +
Sbjct: 157 AIDAGAEDII-----EDDP--------IQVITAPDMLTEVKDKLAENG--FEGEAKVTFI 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T++V E +L++ L + DDV VY +
Sbjct: 202 PKNTVKVTGADAEKVLKLVSVLEDNDDVQEVYAN 235
>gi|334881995|emb|CCB82940.1| UPF0082 protein lp_2253 [Lactobacillus pentosus MP-10]
gi|339639197|emb|CCC18428.1| UPF0082 protein lp_2253 [Lactobacillus pentosus IG1]
Length = 242
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 18/221 (8%)
Query: 13 RKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEV 72
R+ Y+ VK GGP+P SN L V++KAK ++PKD ++R + + S G E + E YE
Sbjct: 30 RELYMA-VKAGGPDPDSNAQLRLVMDKAKAANMPKDNIKRAVDKGSGSGAENYEEVTYEG 88
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GG++++V LTD R+ AAVR GG +A G+V + F R + I D D
Sbjct: 89 YGPGGIAVLVHALTDNKNRTAAAVRSAFTHHGGALAATGAVSYMFDRKGYIVISREDLDT 148
Query: 133 DQ---LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
D+ L+D+ LDAG +D+ ++ +++ + + L +G
Sbjct: 149 DEDTMLMDV-LDAGGDDL------------QSSDEAFEIYTDPKQLAAVRDALEASGYKL 195
Query: 190 ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
ET + ++P +V + +E + +I +L + DDV VY
Sbjct: 196 ETAELT-MIPENLTDVPADKVEKLQHMIDELEDNDDVSEVY 235
>gi|359430500|ref|ZP_09221507.1| hypothetical protein ACT4_042_00110 [Acinetobacter sp. NBRC 100985]
gi|358234043|dbj|GAB03046.1| hypothetical protein ACT4_042_00110 [Acinetobacter sp. NBRC 100985]
Length = 249
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + + GGP+ SN L AV+EKA +++ +D + R I+R A
Sbjct: 16 KQDASRGKVFTKYIREIVTAARLGGPDAASNPRLRAVVEKALSVNMTRDTINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTNGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++++AL+AGA+D+ + DED V+++ +++ D
Sbjct: 136 KRG--EISFEDVSLEDKVMEVALEAGADDI--------EIDEDS----ILVITSPESFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E++ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKAEINDIDQAKQIMK-MIDMLEDLDDVQNVYTN 236
>gi|335041526|ref|ZP_08534553.1| hypothetical protein MAMP_00031 [Methylophaga aminisulfidivorans
MP]
gi|333788140|gb|EGL54022.1| hypothetical protein MAMP_00031 [Methylophaga aminisulfidivorans
MP]
Length = 249
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K GG +P SN L A ++KA ++ KD++ER KR + + + E++ YE YG G
Sbjct: 36 AKMGGSDPASNPRLRAAIDKALGANMTKDVIERATKRGAGELEGVNYEEIRYEGYGPNGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ +TD R+VAAVR V GG M G V F F + ++++ + D+D ++++
Sbjct: 96 AIMVDCMTDNRNRTVAAVRNVFTKRGGNMGTDGCVAFLFNKKGIISLA-SGTDEDAVMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED++ A+ V ++ ++Y+ + L AG+ E+ + +
Sbjct: 155 ALEAGAEDIVT-----------NADGSIDVFTSPEDYSTVKDALDAAGLEAESAQVT-MH 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT+ +D + + +I +LDDV VY++
Sbjct: 203 PDTTVSLDVDDAQKAINMIEAFEDLDDVQEVYSN 236
>gi|381188716|ref|ZP_09896276.1| hypothetical protein HJ01_02797 [Flavobacterium frigoris PS1]
gi|379649354|gb|EIA07929.1| hypothetical protein HJ01_02797 [Flavobacterium frigoris PS1]
Length = 237
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGPNP +N+ L AV++ +K ++PK+ VER IK+A+
Sbjct: 13 MKRWSAMAKAFTRIGKDIVMAVKEGGPNPEANSRLRAVIQNSKAANMPKENVERAIKKAT 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K + E ++E Y G++++VE TD R+VA VR C G M GSV F F
Sbjct: 73 DKDTANYKEVLFEGYAPHGIALLVETATDNNNRTVANVRSFFNKCNGTMGTQGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V E DED Y S + I
Sbjct: 133 HTCNFRIPAEGLDPEELELELIDFGAEEVFE--------DEDGILIYAPFAS----FGTI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L G+ +G E +P T ++ + M ++LI KL E DDV VY
Sbjct: 181 QKELENRGLEI-LSSGFERIPQITKKLTEAEMADVEKLIEKLEEDDDVMNVY 231
>gi|294786919|ref|ZP_06752173.1| conserved hypothetical protein [Parascardovia denticolens F0305]
gi|315226555|ref|ZP_07868343.1| glucose-1-phosphate adenylyltransferase [Parascardovia denticolens
DSM 10105 = JCM 12538]
gi|294485752|gb|EFG33386.1| conserved hypothetical protein [Parascardovia denticolens F0305]
gi|315120687|gb|EFT83819.1| glucose-1-phosphate adenylyltransferase [Parascardovia denticolens
DSM 10105 = JCM 12538]
Length = 252
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 15/192 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L + KAK+ VP D + R +KR S E G + E VYE Y GG
Sbjct: 36 ARTGGGDPNGNPTLYDAIVKAKKSSVPADNITRAVKRGSGEEAGGANYEEIVYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+ ++++ LTD R+ A VR + GG +A+ GSV F F R + + D D D L +
Sbjct: 96 IGLIIQCLTDNRNRAAADVRSTLSKNGGSLAENGSVSFNFHRQGQIEVPAKDVDFDSLFE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
A +AGA+DV ED+ + +Y V + D+ +++AG +++ + L
Sbjct: 156 TAAEAGADDV-----------EDKGD-FYLVTTDPSTVVDVRKAIQDAGFDYDSAE-TTL 202
Query: 198 LPITTIEVDDEA 209
+P+ ++E+D E
Sbjct: 203 VPLNSVELDLEG 214
>gi|225027968|ref|ZP_03717160.1| hypothetical protein EUBHAL_02228 [Eubacterium hallii DSM 3353]
gi|224954682|gb|EEG35891.1| DNA-binding regulatory protein, YebC/PmpR family [Eubacterium
hallii DSM 3353]
Length = 244
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 15/175 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK ++P D +ER IK+A+ +++ YE YG G+
Sbjct: 36 VKEGGPDPANNSKLRDVIAKAKSNNMPNDTIERGIKKAAGDANSVNYVQNTYEGYGPNGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+VE LTD R+ A VR G + G V F F++ +V+ + + D D+ +
Sbjct: 96 AIIVETLTDNKNRTAANVRSAFSKGRGNIGTSGCVSFMFQKKGQIIVSKEEYETDPDEFM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
+ALDAGAED +E EDD+ Y++ + D + ++ L + G+P +
Sbjct: 156 MVALDAGAEDFVE----EDDS--------YEITTDPDAFGEVREALEKEGVPMAS 198
>gi|423016690|ref|ZP_17007411.1| hypothetical protein AXXA_19667 [Achromobacter xylosoxidans AXX-A]
gi|338780272|gb|EGP44685.1| hypothetical protein AXXA_19667 [Achromobacter xylosoxidans AXX-A]
Length = 243
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 14/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
+ GGP+P SN L +KA + ++PKD ++R I+R A EA+ E YE YG GG
Sbjct: 36 ARAGGPDPDSNPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGEAYEEVRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD TR+VA VR GG + GSV F F+ + +DQ+++
Sbjct: 96 AVIVDCMTDNRTRTVAEVRHAFAKNGGNLGQEGSVAFMFKHCGQF-VFAPGTPEDQVMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV TDE E +V+ +Y + +AG+ E D G +
Sbjct: 155 ALEAGAEDVA--------TDE---EGVIEVICAPTDYAAVRKAFDDAGLKAEVD-GIVMK 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ E+ E ++L+ L LDDV VYT
Sbjct: 203 ALNETELAGEDAIKMQKLLDALEGLDDVQEVYT 235
>gi|403252203|ref|ZP_10918513.1| hypothetical protein EMP_00422 [Thermotoga sp. EMP]
gi|418045360|ref|ZP_12683456.1| protein of unknown function DUF28 [Thermotoga maritima MSB8]
gi|33517115|sp|Q9WYT7.2|Y466_THEMA RecName: Full=Probable transcriptional regulatory protein TM_0466
gi|351678442|gb|EHA61589.1| protein of unknown function DUF28 [Thermotoga maritima MSB8]
gi|402812216|gb|EJX26695.1| hypothetical protein EMP_00422 [Thermotoga sp. EMP]
Length = 253
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 118/214 (55%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
++GG N +N L A +E+A+ ++PK+ +ER IKR + + + + E +YE Y GGV+
Sbjct: 37 REGGGNIETNPRLRAAVERARAENMPKENIERAIKRGTGELEGVDYQEVIYEGYAPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDI 138
+ + LTD R+ +R + GG +A+ GSV + F R V+ I D ++L+ I
Sbjct: 97 VYIRALTDNKNRTAQELRHLFNKYGGSLAESGSVSWIFERKGVIEISRDKVKDLEELMMI 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A+DAGAED+ + AE ++++ +N +++ +KL EAG +E + +
Sbjct: 157 AIDAGAEDIKD------------AEDPIQIITAPENLSEVKSKLEEAG--YEVEAKVTFI 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T++V + E E + L ++DDV VY++
Sbjct: 203 PKNTVKVTGKDAEKVLEFLNALEDMDDVQEVYSN 236
>gi|420237066|ref|ZP_14741538.1| hypothetical protein A200_04644 [Parascardovia denticolens IPLA
20019]
gi|391879703|gb|EIT88208.1| hypothetical protein A200_04644 [Parascardovia denticolens IPLA
20019]
Length = 252
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 15/192 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L + KAK+ VP D + R +KR S E G + E VYE Y GG
Sbjct: 36 ARTGGGDPNGNPTLYDAIVKAKKSSVPADNITRAVKRGSGEEAGGANYEEIVYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+ ++++ LTD R+ A VR + GG +A+ GSV F F R + + D D D L +
Sbjct: 96 IGLIIQCLTDNRNRAAADVRSTLSKNGGSLAENGSVSFNFHRQGQIEVPAKDVDFDSLFE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
A +AGA+DV ED+ + +Y V + D+ +++AG +++ + L
Sbjct: 156 TAAEAGADDV-----------EDKGD-FYLVTTDPSTVVDVRKAIQDAGFDYDSAE-TTL 202
Query: 198 LPITTIEVDDEA 209
+P+ ++E+D E
Sbjct: 203 VPLNSVELDLEG 214
>gi|217077314|ref|YP_002335032.1| hypothetical protein THA_1246 [Thermosipho africanus TCF52B]
gi|226696296|sp|B7IHX7.1|Y1246_THEAB RecName: Full=Probable transcriptional regulatory protein THA_1246
gi|217037169|gb|ACJ75691.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
Length = 252
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 118/214 (55%), Gaps = 17/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
K+GG +P +N L AVLE+A+ ++PKD +E++IK+ + + + + E +YE Y GV+
Sbjct: 37 KEGGGDPETNPRLRAVLERARAANMPKDTIEKSIKKGTGELEGVDYQEIIYEAYAPAGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLDI 138
+ + +TD R+ +R ++ GG +A+ GSV + F R ++ I K AD ++ +
Sbjct: 97 LYIYAMTDNKNRTAQELRHLLSKHGGSLAESGSVAWLFERKGIIEIPKEKIADFEEFAMV 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A+DAGAED+I EDD +V++ D T++ KL E G FE + +
Sbjct: 157 AIDAGAEDII-----EDDP--------IQVITAPDMLTEVKDKLAENG--FEGEAKVTFI 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T++V E +L++ L + DDV VY +
Sbjct: 202 PKNTVKVTGADAEKVLKLVSVLEDNDDVQEVYAN 235
>gi|58337048|ref|YP_193633.1| hypothetical protein LBA0733 [Lactobacillus acidophilus NCFM]
gi|227903611|ref|ZP_04021416.1| protein of hypothetical function DUF28 [Lactobacillus acidophilus
ATCC 4796]
gi|67461868|sp|Q5FL22.1|Y733_LACAC RecName: Full=Probable transcriptional regulatory protein LBA0733
gi|58254365|gb|AAV42602.1| hypothetical protein LBA0733 [Lactobacillus acidophilus NCFM]
gi|227868498|gb|EEJ75919.1| protein of hypothetical function DUF28 [Lactobacillus acidophilus
ATCC 4796]
Length = 242
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L V++KA+ ++PKD ++R IK+A E + E YE Y GGV+
Sbjct: 36 AKSGGPDPDGNPALRMVIDKARSNNMPKDNIQRAIKKAEGGSDEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
+ VE LTD R+ + VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VFVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ DD Y++ + + ++ L +AG D +
Sbjct: 156 DVMDAGGDDL----QTSDDA--------YEIYTDPKQFAEVRDALIKAGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E + L+ L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFEHLVEALEDSDDVQNVYT 236
>gi|262372335|ref|ZP_06065614.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262312360|gb|EEY93445.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 249
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + + GGP+ SN L AV+EKA +++ +D + R I+R A
Sbjct: 16 KQDASRGKVFTKYIREIVTASRLGGPDAASNPRLRAVVEKALSVNMTRDTINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTNGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++++AL+AGA+D+ + DED V+++ +++ D
Sbjct: 136 KRG--EISFDDVSLEDKVMEVALEAGADDI--------EIDEDS----ILVITSPESFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E++ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKAEINDIDQAKQIMK-MIDMLEDLDDVQNVYTN 236
>gi|188996624|ref|YP_001930875.1| hypothetical protein SYO3AOP1_0685 [Sulfurihydrogenibium sp.
YO3AOP1]
gi|226708017|sp|B2V8P8.1|Y685_SULSY RecName: Full=Probable transcriptional regulatory protein
SYO3AOP1_0685
gi|188931691|gb|ACD66321.1| protein of unknown function DUF28 [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 251
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 20/215 (9%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIV 81
GG +P +N L +EKAKE+++P + VER IKR + + + E+V YE YG GGV+IV
Sbjct: 39 GGGDPEANPRLRIAIEKAKEVNMPMENVERAIKRGTGELEGVNYEEVQYEGYGPGGVAIV 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
VE TD R+ A +R + GG + G V F F ++N+ +D++ + A++
Sbjct: 99 VEATTDNRNRTTAEIRHIFSKYGGNLGSSGCVSFSFEDKGIINVPKDKYSEDEIFEKAIE 158
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL--LP 199
AGAEDVI DD + YY++ + + L + G+ +EL +P
Sbjct: 159 AGAEDVI-----MDDPE------YYEIRTAPSELYKVRENLEKMGVEIAK---AELTKIP 204
Query: 200 ITTIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
TT+++ DE A +L K L+ L + DDV VY +
Sbjct: 205 TTTVQITDEETATKLMK-LLDALEDNDDVQKVYAN 238
>gi|46580664|ref|YP_011472.1| hypothetical protein DVU2259 [Desulfovibrio vulgaris str.
Hildenborough]
gi|387153948|ref|YP_005702884.1| hypothetical protein Deval_2102 [Desulfovibrio vulgaris RCH1]
gi|49037275|sp|P62035.1|Y2259_DESVH RecName: Full=Probable transcriptional regulatory protein DVU_2259
gi|46450083|gb|AAS96732.1| conserved hypothetical protein TIGR01033 [Desulfovibrio vulgaris
str. Hildenborough]
gi|311234392|gb|ADP87246.1| protein of unknown function DUF28 [Desulfovibrio vulgaris RCH1]
Length = 247
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 116/212 (54%), Gaps = 14/212 (6%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSI 80
K G +P N+ L A + AK +++PKD +E IK+ + E +E YE YG GGV++
Sbjct: 37 KAGGDPVGNSRLRAAIAAAKAINLPKDKIENAIKKGTGELAGGDILEMAYEGYGPGGVAL 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+VEV TD R+VA VR ++ GG M + G V + F R V+ ++ ++QL+++AL
Sbjct: 97 IVEVATDNKNRTVAEVRHILSKHGGSMGESGCVAWMFDRKGVITLEKDKYTEEQLMEVAL 156
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AGAEDV TDE + ++VV+ + ++ + L AG+ ++ + ++P
Sbjct: 157 EAGAEDV---------TDEGES---WEVVTAAADFNAVREALEAAGVEMQSAEFT-MVPQ 203
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
IEVD E L+ L + DDV V+ +
Sbjct: 204 NEIEVDAETGRKLMRLVDALEDNDDVQNVHAN 235
>gi|170288270|ref|YP_001738508.1| hypothetical protein TRQ2_0469 [Thermotoga sp. RQ2]
gi|226706222|sp|B1L927.1|Y469_THESQ RecName: Full=Probable transcriptional regulatory protein TRQ2_0469
gi|170175773|gb|ACB08825.1| protein of unknown function DUF28 [Thermotoga sp. RQ2]
Length = 253
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 118/216 (54%), Gaps = 20/216 (9%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
++GG N +N L A +E+A+ ++PK+ +ER IKR + + + + E +YE Y GGV+
Sbjct: 37 REGGGNIETNPRLRAAVERARAENMPKENIERAIKRGTGELEGVDYQEVIYEGYAPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDI 138
+ + LTD R+ +R + GG +A+ GSV + F R V+ I D ++L+ I
Sbjct: 97 VYIRALTDNKNRTAQELRHLFNKYGGSLAESGSVSWIFERKGVIEISRDKVKDLEELMMI 156
Query: 139 ALDAGAEDV--IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
A+DAGAED+ E P+ ++++ +N +++ +KL EAG +E +
Sbjct: 157 AIDAGAEDIKDTEDPI--------------QIITAPENLSEVKSKLEEAG--YEVEAKVT 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T++V + E E + L ++DDV VY++
Sbjct: 201 FIPKNTVKVTGKDAEKVLEFLNALEDMDDVQEVYSN 236
>gi|392949240|ref|ZP_10314827.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
pentosus KCA1]
gi|392435552|gb|EIW13489.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
pentosus KCA1]
Length = 242
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 18/221 (8%)
Query: 13 RKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEV 72
R+ Y+ VK GGP+P SN L V++KAK ++PKD ++R + + S G E + E YE
Sbjct: 30 RELYMA-VKAGGPDPDSNAQLRLVMDKAKAANMPKDNIKRAVDKGSGSGAENYEEVTYEG 88
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GG++++V LTD R+ AAVR GG +A G+V + F R + I D D
Sbjct: 89 YGPGGIAVLVHALTDNKNRTAAAVRSAFTHHGGSLAATGAVSYMFDRKGYIVISREDLDT 148
Query: 133 DQ---LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
D+ L+D+ LDAG +D+ ++ +++ + + L +G
Sbjct: 149 DEDTMLMDV-LDAGGDDL------------QSSDEAFEIYTDPKQLAAVRDALEASGYKL 195
Query: 190 ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
ET + ++P +V + E + +I +L + DDV VY
Sbjct: 196 ETAELT-MIPENLTDVPADKAEKLQHMIDELEDNDDVSEVY 235
>gi|329113838|ref|ZP_08242609.1| Hypothetical protein APO_0612 [Acetobacter pomorum DM001]
gi|326696848|gb|EGE48518.1| Hypothetical protein APO_0612 [Acetobacter pomorum DM001]
Length = 249
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ G P+P +N L A + A+E+++PKD +ER IK+AS G + ++E YE YG GV
Sbjct: 36 TRSGLPDPAANPRLRAAISAAREVNMPKDTIERAIKKASGAAGSDDYVEVRYEGYGPAGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+VE LTD R+ + VR GG M + SV F FRR V+ + A +D++L+
Sbjct: 96 AIIVEGLTDNRNRTASDVRAAFSKHGGSMGESNSVSFMFRRLGVIAYPASVASEDEMLEA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKV 168
A++AGAE+V+ + + T E E ++ V
Sbjct: 156 AIEAGAENVVSTETSHEVTCE--VESFFAV 183
>gi|124008996|ref|ZP_01693681.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123985422|gb|EAY25330.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 248
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 117/215 (54%), Gaps = 18/215 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K G P+P +N L ++ AK +++PKD +ER IK+A+ + E YE Y G+++
Sbjct: 37 KIGSPDPETNPRLRLAIQNAKGVNMPKDNIERAIKKATGADGTDYTETTYEGYAPNGIAV 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQLLD 137
VE TD + R+VA+VR + GG +A GSV F F R V I + DAD+ + L+
Sbjct: 97 FVECTTDNLNRTVASVRSIFNKYGGNLATNGSVEFLFDRKGVFQIIRPEGIDADEFE-LE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A D GAE+V + ++ Y V +++ ++ KL E I E + G E
Sbjct: 156 LA-DGGAEEV------------EFSDDYIVVTCAMEDFGNVQKKLDEMTIEAE-NAGLER 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T++ + DE ++ + ++I KL + DDV VY +
Sbjct: 202 IPTTSVNLSDEDLQQSMKVIDKLEDDDDVQKVYHN 236
>gi|441517668|ref|ZP_20999402.1| putative transcriptional regulator [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441455542|dbj|GAC57363.1| putative transcriptional regulator [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 251
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 110/214 (51%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + E G + VYE YG GV
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERARKRGAGEEAGGADWQTIVYEGYGPSGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E LTD R+ VR + GG MADPGSV + F R VV ++ + +D +L
Sbjct: 97 AILIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFTRKGVVTLEKGEQSEDDVLLA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++VV + + T L+EAGI +++ +
Sbjct: 157 VLDAGAEEV-------NDLGE-----AFEVVCDPGDLVAVRTALQEAGIDYDSAE-PDFR 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD + +L+ L + DDV VYT+
Sbjct: 204 ASVEVPVDADGARKVMKLVDALEDSDDVQNVYTN 237
>gi|425734802|ref|ZP_18853119.1| hypothetical protein C272_06695 [Brevibacterium casei S18]
gi|425480738|gb|EKU47902.1| hypothetical protein C272_06695 [Brevibacterium casei S18]
Length = 250
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GGP+P N L ++KAK+ VP D + R +KR EA + +YE Y GGV
Sbjct: 37 RNGGPDPDGNPTLFDAIQKAKKNSVPADNINRAVKRGGGLDGEAVNYETIMYEGYAAGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR V GG MADPGSV + F R V+ + D+D +++
Sbjct: 97 ALLIECLTDNRNRAASEVRVAVTRNGGSMADPGSVSYNFNRKGVIVVPAEGTDEDAIVEA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAE+V D E ++V+S + + + + L +AGI +++ S +
Sbjct: 157 TLEAGAEEV-----------NDEGET-FEVISEATDLVAVRSALVDAGIDYDSAEAS-FV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + +D +LI L + D+V VY++
Sbjct: 204 PGLKVSLDAATAAKVFKLIDALEDSDEVQNVYSN 237
>gi|378827393|ref|YP_005190125.1| hypothetical protein SFHH103_02808 [Sinorhizobium fredii HH103]
gi|365180445|emb|CCE97300.1| conserved hyphotetical protein [Sinorhizobium fredii HH103]
Length = 248
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ AK +PKD +ER +K+A+ E + E YE YG GGV+
Sbjct: 36 AKSGMPDPAMNPRLRLAIQNAKAQSMPKDNIERAVKKAAGGDAENYEEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR + GG + + GSV F F R + + D D++++ A
Sbjct: 96 VIVEALTDNRNRTASNVRSMFTKAGGALGETGSVSFSFDRVGEITYTLSAGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
+++GA+DV TDED + ++ + D++ L G+ E + +
Sbjct: 156 IESGADDVT--------TDEDG----HTILCGFEEIGDVSKALE--GVLGEAETVKAIWK 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD+E + LI L + DDV VY++
Sbjct: 202 PQNTVPVDEEKAQSLMRLIDNLEDDDDVQNVYSN 235
>gi|402758814|ref|ZP_10861070.1| hypothetical protein ANCT7_14108 [Acinetobacter sp. NCTC 7422]
Length = 249
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + + GGP+ SN L AV+EKA +++ +D + R I+R A
Sbjct: 16 KQDASRGKVFTKYIREIVTAARLGGPDAASNPRLRAVVEKALSVNMTRDTINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTNGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++++AL+AGA+D+ + DED V+++ +++ D
Sbjct: 136 KRG--EISFEDVSLEDKVMEVALEAGADDI--------EIDEDT----ILVITSPESFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E++ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKAEINDIDQAKQIMK-MIDMLEDLDDVQNVYTN 236
>gi|433604879|ref|YP_007037248.1| hypothetical protein BN6_30680 [Saccharothrix espanaensis DSM
44229]
gi|407882732|emb|CCH30375.1| hypothetical protein BN6_30680 [Saccharothrix espanaensis DSM
44229]
Length = 250
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GG +P N L ++KA++ VP D +ER KR + + +YE YG GV
Sbjct: 37 RTGGSDPDGNPTLYDAIQKARKNSVPLDNIERARKRGGGEEAGGADWQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR + GG MADPGSV + F R VV + D +D +L
Sbjct: 97 AVLVECLTDNRNRAASEVRTAMTRNGGSMADPGSVSYMFTRKGVVIVPKGDLAEDDVLMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E Y+VVS + + + T L++AG +E+ + L
Sbjct: 157 VLDAGAEEV-------NDLGES-----YEVVSEAGDMVAVRTALQDAGYDYESAE-ANFL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T++++ E +LI L + DDV V+ +
Sbjct: 204 PSVTVQLEAEGARKIFKLIDALEDCDDVQNVFAN 237
>gi|15643232|ref|NP_228276.1| hypothetical protein TM0466 [Thermotoga maritima MSB8]
gi|4980974|gb|AAD35550.1|AE001724_8 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 254
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 118/214 (55%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
++GG N +N L A +E+A+ ++PK+ +ER IKR + + + + E +YE Y GGV+
Sbjct: 38 REGGGNIETNPRLRAAVERARAENMPKENIERAIKRGTGELEGVDYQEVIYEGYAPGGVA 97
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDI 138
+ + LTD R+ +R + GG +A+ GSV + F R V+ I D ++L+ I
Sbjct: 98 VYIRALTDNKNRTAQELRHLFNKYGGSLAESGSVSWIFERKGVIEISRDKVKDLEELMMI 157
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A+DAGAED+ + AE ++++ +N +++ +KL EAG +E + +
Sbjct: 158 AIDAGAEDIKD------------AEDPIQIITAPENLSEVKSKLEEAG--YEVEAKVTFI 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T++V + E E + L ++DDV VY++
Sbjct: 204 PKNTVKVTGKDAEKVLEFLNALEDMDDVQEVYSN 237
>gi|294669541|ref|ZP_06734608.1| hypothetical protein NEIELOOT_01440 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308454|gb|EFE49697.1| hypothetical protein NEIELOOT_01440 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 241
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 113/214 (52%), Gaps = 17/214 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGGVSI 80
GG +P +N L ++KA ++PKD V+R I + + +G E +IE YE YG GG ++
Sbjct: 39 GGGDPGANPRLRLAMDKAAASNMPKDNVQRAIDKGTGNLEGVE-YIELRYEGYGIGGAAL 97
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+V+ +TD TR+VA VR GG + G V F F + FT D+D L++ AL
Sbjct: 98 MVDCMTDNKTRTVADVRHAFNKNGGNLGTDGCVAFNFVHQGY--LVFTGVDEDALMEAAL 155
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AGAEDVI DE E +V++ ++ ++ KL AG E + +
Sbjct: 156 EAGAEDVI--------ADE---EGIIEVITAPADWAEVKAKLEAAGFKSEDGDVTMRAQN 204
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T+ D+A+++ K LI L LDDV VYT +
Sbjct: 205 ETVLSGDDAVKMQK-LIDALEALDDVQNVYTSAV 237
>gi|410939200|ref|ZP_11371035.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
noguchii str. 2006001870]
gi|410785705|gb|EKR74661.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
noguchii str. 2006001870]
Length = 249
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 120/214 (56%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER +++ + E + E +YE +G GG++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAVRKGTGELEGVTYEECLYECFGPGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQISEDELVDVA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE D Y+V+++ D+Y + L E G+ E ++ +P
Sbjct: 157 VGGGAEDVI----NEGDV--------YRVITSPDDYETVLHALNEKGLKSE-ESEIRYIP 203
Query: 200 ITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
+ + E+ D E E +LI +L DDV +V ++
Sbjct: 204 LVSSEIADKEVAEKVMKLIDQLDGHDDVTSVTSN 237
>gi|306830926|ref|ZP_07464088.1| glucose-1-phosphate adenylyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|304426949|gb|EFM30059.1| glucose-1-phosphate adenylyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 256
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 39/257 (15%)
Query: 2 QRKQSCIRGWGRKSYLRN-----------------------VKKGGPNPTSNTVLAAVLE 38
R++ C+ G + S ++N K GG +P+ N L VL+
Sbjct: 10 NREEFCMSGHNKWSKIKNKKGEADAKRGAIFNKLSREIFVAAKAGGGDPSMNASLRMVLD 69
Query: 39 KAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVR 97
KA+ ++PKD + R IK+A++ G + E YE YG GGV+I+V LTD R+ A +
Sbjct: 70 KARAANMPKDNINRAIKKATDVGDTTNYDEITYEGYGPGGVAILVHTLTDNKKRTDANMH 129
Query: 98 EVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED 155
+ GG M GSV + F R V++ D D+D +L++ LDAGAED+ D
Sbjct: 130 TIFTRNGGNMGSTGSVAYMFDRKGYIVIDRDNLDLDEDAMLEVILDAGAEDL----KTSD 185
Query: 156 DTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKE 215
D +++ + + + L+ + F S ++P + +DDE ++ +
Sbjct: 186 DA--------FEIFTEPKEFPAVKEALQAQNLEFAQAQLS-MIPQNYVSLDDEQADILET 236
Query: 216 LIAKLLELDDVDAVYTD 232
L+ KL + DDV VYT+
Sbjct: 237 LVDKLEDDDDVQDVYTN 253
>gi|294795135|ref|ZP_06760269.1| glucose-1-phosphate adenylyltransferase [Veillonella sp. 3_1_44]
gi|294453927|gb|EFG22302.1| glucose-1-phosphate adenylyltransferase [Veillonella sp. 3_1_44]
Length = 245
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 111/201 (55%), Gaps = 23/201 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-----QEAFIEKVYEVYG 74
+ GG +PT N L L+KA+E ++PKD NI+RA +KG A+ E VYE YG
Sbjct: 36 ARMGGADPTGNMRLKLALQKARENNIPKD----NIQRAIDKGIGATDMNAYEEIVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ VEV+TD R+ A VR GG + + G V + F+ V I D+D+
Sbjct: 92 PAGVAVTVEVMTDNRNRAAADVRHAFSKQGGNLGESGCVGWMFKSKGVFVIDKEGHDEDE 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L +ALDAGAED+ +EDD +++ +T +++ + L +AGI E
Sbjct: 152 LTLLALDAGAEDL----KSEDDV--------FEIYTTPEDFDAVEAALADAGIETEVAKI 199
Query: 195 SELLPITTIEVD-DEAMELNK 214
+ ++P TTIE+ D+A+++ K
Sbjct: 200 T-MIPDTTIELSGDDAVKMQK 219
>gi|291550434|emb|CBL26696.1| conserved hypothetical protein TIGR01033 [Ruminococcus torques
L2-14]
Length = 243
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 100/174 (57%), Gaps = 16/174 (9%)
Query: 20 VKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG +PT+N+ L V+ KAK ++P D +ERNIK+A+ +G E++ YE YG G
Sbjct: 36 VKEGGSADPTNNSRLRDVIAKAKANNMPNDTIERNIKKAAGEGTADNYERITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF--RRARVVNIKFTDADKDQL 135
+I+V+ LTD R+ + VR G + PG V F F + +++ + D D D L
Sbjct: 96 TAIIVKTLTDNKNRTASNVRNAFTKGSGNVGTPGCVSFMFDEKGQIIIDKEECDMDSDDL 155
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
+ LDAGAED E E+D+ Y+V++ ++++D+ K+ EAGIP
Sbjct: 156 MMTVLDAGAEDFNE----EEDS--------YEVLTAPEDFSDVRLKMEEAGIPM 197
>gi|452943699|ref|YP_007499864.1| DNA-binding regulatory protein, YebC/PmpR family [Hydrogenobaculum
sp. HO]
gi|452882117|gb|AGG14821.1| DNA-binding regulatory protein, YebC/PmpR family [Hydrogenobaculum
sp. HO]
Length = 249
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 16/210 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GGP+P +N L +E A+++ +P D +E+ IKR S +E +E+ VYE YG GG +
Sbjct: 37 KLGGPDPNANPRLRMAIEAARKVSMPMDTIEKAIKRGSGNDKEGALEEIVYEGYGPGGTA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V V TD ++ + VR GG + G V + F + V+ I D+++L++ A
Sbjct: 97 IMVVVATDNRNKATSEVRHAFSKHGGNLGSSGCVSYLFEQKGVIEIPKESTDEEKLMEAA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+AGA+DV +T ED Y + D YT + L G E+ S L+P
Sbjct: 157 LEAGADDV--------ETTEDMFIVY---TNPKDVYT-VKDILASKGFAIESAKTS-LIP 203
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAV 229
TT+E+ D ++ K+L+ L LD++D V
Sbjct: 204 TTTVEIKD--IDTAKKLLNLLEHLDELDEV 231
>gi|255536189|ref|YP_003096560.1| hypothetical protein FIC_02056 [Flavobacteriaceae bacterium
3519-10]
gi|255342385|gb|ACU08498.1| hypothetical protein FIC_02056 [Flavobacteriaceae bacterium
3519-10]
Length = 260
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P +N L ++ AK ++PKD VER IK+AS E + E YE YG GGV+
Sbjct: 48 VKAGGPDPEANPALRRCIQNAKGANMPKDNVERAIKKASGAEAENYEEVTYEGYGQGGVA 107
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+E T+ TR+VA VR + G + G + F F R + I + L+ +A
Sbjct: 108 FFIECTTNNTTRTVANVRAIFNKFDGNLGKNGELAFVFDRKGIFTIDRS------LIKMA 161
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL-- 197
D ++I+ + D+DE+ + S +++ + KL E GI + +EL
Sbjct: 162 WDDFEMEMIDGGAEDIDSDEEEV----MITSAYEDFGAVAHKLDELGIEVKA---AELQR 214
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T EV +E + N +++ + E DDV VY +
Sbjct: 215 IPNNTKEVSEEQFKANMKMLDRFEEDDDVQNVYHN 249
>gi|169633711|ref|YP_001707447.1| hypothetical protein ABSDF2152 [Acinetobacter baumannii SDF]
gi|169796215|ref|YP_001714008.1| hypothetical protein ABAYE2155 [Acinetobacter baumannii AYE]
gi|184157856|ref|YP_001846195.1| hypothetical protein ACICU_01536 [Acinetobacter baumannii ACICU]
gi|213157051|ref|YP_002319096.1| hypothetical protein AB57_1731 [Acinetobacter baumannii AB0057]
gi|215483670|ref|YP_002325891.1| hypothetical protein ABBFA_001989 [Acinetobacter baumannii
AB307-0294]
gi|239502267|ref|ZP_04661577.1| hypothetical protein AbauAB_08130 [Acinetobacter baumannii AB900]
gi|260555277|ref|ZP_05827498.1| UPF0082 protein [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|301346643|ref|ZP_07227384.1| hypothetical protein AbauAB0_10366 [Acinetobacter baumannii AB056]
gi|301512569|ref|ZP_07237806.1| hypothetical protein AbauAB05_13327 [Acinetobacter baumannii AB058]
gi|301594641|ref|ZP_07239649.1| hypothetical protein AbauAB059_02490 [Acinetobacter baumannii
AB059]
gi|332855487|ref|ZP_08435907.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013150]
gi|332866616|ref|ZP_08437103.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013113]
gi|332872497|ref|ZP_08440467.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6014059]
gi|384131951|ref|YP_005514563.1| hypothetical protein [Acinetobacter baumannii 1656-2]
gi|384142943|ref|YP_005525653.1| hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|385236763|ref|YP_005798102.1| hypothetical protein ABTW07_1212 [Acinetobacter baumannii
TCDC-AB0715]
gi|385237274|ref|YP_005798613.1| hypothetical protein ABTW07_1724 [Acinetobacter baumannii
TCDC-AB0715]
gi|387124186|ref|YP_006290068.1| YebC/PmpR family DNA-binding regulatory protein [Acinetobacter
baumannii MDR-TJ]
gi|403676805|ref|ZP_10938686.1| hypothetical protein ANCT1_18745 [Acinetobacter sp. NCTC 10304]
gi|407932567|ref|YP_006848210.1| YebC/PmpR family DNA-binding regulatory protein [Acinetobacter
baumannii TYTH-1]
gi|416145905|ref|ZP_11600755.1| hypothetical protein AB210_0766 [Acinetobacter baumannii AB210]
gi|417543871|ref|ZP_12194957.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC032]
gi|417547611|ref|ZP_12198693.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-18]
gi|417553299|ref|ZP_12204369.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-81]
gi|417560855|ref|ZP_12211734.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC137]
gi|417565262|ref|ZP_12216136.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC143]
gi|417568224|ref|ZP_12219087.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC189]
gi|417572546|ref|ZP_12223400.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC-5]
gi|417578834|ref|ZP_12229667.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-17]
gi|417869776|ref|ZP_12514756.1| hypothetical protein ABNIH1_06420 [Acinetobacter baumannii ABNIH1]
gi|417873238|ref|ZP_12518114.1| hypothetical protein ABNIH2_04440 [Acinetobacter baumannii ABNIH2]
gi|417878620|ref|ZP_12523229.1| hypothetical protein ABNIH3_11253 [Acinetobacter baumannii ABNIH3]
gi|417883264|ref|ZP_12527518.1| hypothetical protein ABNIH4_12543 [Acinetobacter baumannii ABNIH4]
gi|421197871|ref|ZP_15655040.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC109]
gi|421204552|ref|ZP_15661673.1| dna-binding regulatory family [Acinetobacter baumannii AC12]
gi|421456106|ref|ZP_15905449.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-123]
gi|421536414|ref|ZP_15982660.1| transcriptional regulatory protein [Acinetobacter baumannii AC30]
gi|421622046|ref|ZP_16062956.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC074]
gi|421624767|ref|ZP_16065631.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC098]
gi|421629548|ref|ZP_16070280.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC180]
gi|421632780|ref|ZP_16073425.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-13]
gi|421645011|ref|ZP_16085485.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-235]
gi|421648607|ref|ZP_16089010.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-251]
gi|421652901|ref|ZP_16093249.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC0162]
gi|421653637|ref|ZP_16093970.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-72]
gi|421657141|ref|ZP_16097416.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-83]
gi|421661953|ref|ZP_16102123.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC110]
gi|421669903|ref|ZP_16109914.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC099]
gi|421676611|ref|ZP_16116518.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC065]
gi|421678618|ref|ZP_16118502.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC111]
gi|421687549|ref|ZP_16127270.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-143]
gi|421691100|ref|ZP_16130764.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-116]
gi|421696971|ref|ZP_16136550.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-692]
gi|421699766|ref|ZP_16139290.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-58]
gi|421703382|ref|ZP_16142845.1| hypothetical protein B825_08914 [Acinetobacter baumannii ZWS1122]
gi|421707105|ref|ZP_16146504.1| hypothetical protein B837_08480 [Acinetobacter baumannii ZWS1219]
gi|421791126|ref|ZP_16227310.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-2]
gi|421798438|ref|ZP_16234460.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-21]
gi|421798619|ref|ZP_16234636.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC1]
gi|421804890|ref|ZP_16240786.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-694]
gi|421809091|ref|ZP_16244931.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC035]
gi|424052617|ref|ZP_17790149.1| UPF0082 protein [Acinetobacter baumannii Ab11111]
gi|424060153|ref|ZP_17797644.1| UPF0082 protein [Acinetobacter baumannii Ab33333]
gi|425748810|ref|ZP_18866792.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-348]
gi|425751780|ref|ZP_18869722.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-113]
gi|445406606|ref|ZP_21431883.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-57]
gi|445458714|ref|ZP_21447254.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC047]
gi|445469619|ref|ZP_21451276.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC338]
gi|445475539|ref|ZP_21453429.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-78]
gi|445488780|ref|ZP_21458389.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii AA-014]
gi|226701115|sp|B7H3U3.1|Y1989_ACIB3 RecName: Full=Probable transcriptional regulatory protein
ABBFA_001989
gi|226701194|sp|B0VR58.1|Y2152_ACIBS RecName: Full=Probable transcriptional regulatory protein ABSDF2152
gi|226701197|sp|B0VC84.1|Y2155_ACIBY RecName: Full=Probable transcriptional regulatory protein ABAYE2155
gi|226734691|sp|B2HYW1.1|Y1536_ACIBC RecName: Full=Probable transcriptional regulatory protein
ACICU_01536
gi|226736434|sp|B7I4G5.1|Y1731_ACIB5 RecName: Full=Probable transcriptional regulatory protein AB57_1731
gi|169149142|emb|CAM87021.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
gi|169152503|emb|CAP01477.1| conserved hypothetical protein [Acinetobacter baumannii]
gi|183209450|gb|ACC56848.1| uncharacterized conserved protein [Acinetobacter baumannii ACICU]
gi|213056211|gb|ACJ41113.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
gi|213988098|gb|ACJ58397.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
gi|260411819|gb|EEX05116.1| UPF0082 protein [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|322508171|gb|ADX03625.1| Hypothetical protein ABK1_1991 [Acinetobacter baumannii 1656-2]
gi|323517260|gb|ADX91641.1| hypothetical protein ABTW07_1212 [Acinetobacter baumannii
TCDC-AB0715]
gi|323517772|gb|ADX92153.1| hypothetical protein ABTW07_1724 [Acinetobacter baumannii
TCDC-AB0715]
gi|332727461|gb|EGJ58891.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013150]
gi|332734490|gb|EGJ65603.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013113]
gi|332739303|gb|EGJ70160.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6014059]
gi|333366464|gb|EGK48478.1| hypothetical protein AB210_0766 [Acinetobacter baumannii AB210]
gi|342229648|gb|EGT94507.1| hypothetical protein ABNIH1_06420 [Acinetobacter baumannii ABNIH1]
gi|342231945|gb|EGT96737.1| hypothetical protein ABNIH2_04440 [Acinetobacter baumannii ABNIH2]
gi|342232264|gb|EGT97044.1| hypothetical protein ABNIH3_11253 [Acinetobacter baumannii ABNIH3]
gi|342236161|gb|EGU00703.1| hypothetical protein ABNIH4_12543 [Acinetobacter baumannii ABNIH4]
gi|347593436|gb|AEP06157.1| conserve hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|385878678|gb|AFI95773.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii MDR-TJ]
gi|395523437|gb|EJG11526.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC137]
gi|395554519|gb|EJG20521.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC189]
gi|395557018|gb|EJG23019.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC143]
gi|395566377|gb|EJG28020.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC109]
gi|395567972|gb|EJG28646.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-17]
gi|398325955|gb|EJN42112.1| dna-binding regulatory family [Acinetobacter baumannii AC12]
gi|400208114|gb|EJO39084.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC-5]
gi|400211204|gb|EJO42167.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-123]
gi|400381759|gb|EJP40437.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC032]
gi|400389360|gb|EJP52431.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-18]
gi|400393558|gb|EJP60604.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-81]
gi|404560704|gb|EKA65946.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-692]
gi|404563251|gb|EKA68461.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-116]
gi|404564349|gb|EKA69529.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-143]
gi|404571467|gb|EKA76527.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-58]
gi|404668105|gb|EKB36014.1| UPF0082 protein [Acinetobacter baumannii Ab33333]
gi|404672067|gb|EKB39909.1| UPF0082 protein [Acinetobacter baumannii Ab11111]
gi|407192176|gb|EKE63359.1| hypothetical protein B825_08914 [Acinetobacter baumannii ZWS1122]
gi|407192546|gb|EKE63723.1| hypothetical protein B837_08480 [Acinetobacter baumannii ZWS1219]
gi|407901148|gb|AFU37979.1| YebC/PmpR family DNA-binding regulatory protein [Acinetobacter
baumannii TYTH-1]
gi|408504025|gb|EKK05777.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-235]
gi|408504318|gb|EKK06069.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC0162]
gi|408512990|gb|EKK14628.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-72]
gi|408515441|gb|EKK17029.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-251]
gi|408696560|gb|EKL42093.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC074]
gi|408700461|gb|EKL45912.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC098]
gi|408701534|gb|EKL46963.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC180]
gi|408707888|gb|EKL53167.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-13]
gi|408714283|gb|EKL59435.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-83]
gi|408715445|gb|EKL60573.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC110]
gi|409985665|gb|EKO41872.1| transcriptional regulatory protein [Acinetobacter baumannii AC30]
gi|410379678|gb|EKP32281.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC065]
gi|410386865|gb|EKP39327.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC099]
gi|410392181|gb|EKP44543.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC111]
gi|410394302|gb|EKP46638.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-21]
gi|410403622|gb|EKP55705.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-2]
gi|410410275|gb|EKP62189.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-694]
gi|410412610|gb|EKP64467.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC1]
gi|410414875|gb|EKP66667.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC035]
gi|425489791|gb|EKU56092.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-348]
gi|425499787|gb|EKU65818.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-113]
gi|444767616|gb|ELW91863.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii AA-014]
gi|444774281|gb|ELW98369.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC338]
gi|444775123|gb|ELW99193.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC047]
gi|444778878|gb|ELX02878.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-78]
gi|444781253|gb|ELX05172.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-57]
gi|452953459|gb|EME58878.1| hypothetical protein G347_04673 [Acinetobacter baumannii MSP4-16]
Length = 249
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-S 58
KQ RG Y+R + K GG +P SN L AV+EKA +++ +D + R I+R
Sbjct: 16 KQDASRGKVFTKYIREIVTAAKLGGADPASNPRLRAVVEKALSVNMTRDTINRAIQRGVG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTAGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++D+AL+AGAED+ V+ED+ V+++ + + +
Sbjct: 136 KRG--EITFDDVSLEDKIMDVALEAGAEDI---EVSEDE---------ILVITSPETFGE 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K LI L +LDDV VYT+
Sbjct: 182 VQDALAAAGL--KSDNAEVVMSPSTKAEITDIDQAKQVMK-LIDMLEDLDDVQNVYTN 236
>gi|398331189|ref|ZP_10515894.1| hypothetical protein LalesM3_03919 [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 249
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 117/213 (54%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER I++ + + + E+ +YE +G GG++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRKGTGELEGVVYEECLYECFGSGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDELVDLA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE + Y+V++T D+Y + L E G+ E +
Sbjct: 157 VGGGAEDVI----NEGEV--------YRVITTPDDYESVLHALNEKGLKSEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ D E E +LI +L DDV +V ++
Sbjct: 205 VSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|374289149|ref|YP_005036234.1| hypothetical protein BMS_2482 [Bacteriovorax marinus SJ]
gi|301167690|emb|CBW27273.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 243
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 107/215 (49%), Gaps = 13/215 (6%)
Query: 18 RNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 77
R VK GG + ++N +L LEK K+ +VPKD ++R IK+ + + E YE YG G
Sbjct: 32 RAVKSGGDDASTNFLLRIALEKCKKNNVPKDNIDRAIKKGLGGDDDGYEEVTYEGYGPDG 91
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I VE T+ TR+VA VR GG + G++ F F R V I D D+D
Sbjct: 92 VAIFVETSTNNTTRTVANVRSYFNKAGGSLGTTGTLQFIFTRKAVFEIPQGDLDEDDFTL 151
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+D GAE++ + + ++V + + I+ KL E + E + G E
Sbjct: 152 EMIDCGAEEI------------ELEDGIFEVSGPMEVFGAISKKLEEMNLEPE-EAGLEQ 198
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T EV DE N +LI KL DDV VY +
Sbjct: 199 IPTTFKEVSDETYLNNMKLIEKLESDDDVVKVYHN 233
>gi|405979841|ref|ZP_11038182.1| YebC/PmpR family DNA-binding regulatory protein [Actinomyces
turicensis ACS-279-V-Col4]
gi|404391216|gb|EJZ86280.1| YebC/PmpR family DNA-binding regulatory protein [Actinomyces
turicensis ACS-279-V-Col4]
Length = 253
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKRGSGAEAGGANYETIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R +V + D D+D ++
Sbjct: 96 VAFLVECLTDNRNRAASDVRLGFTRQGGSLADPGSVSYLFSRRGIVEVGAADGVDEDTIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ LDAGAE+V DT + + + S + + ++ L+ AGI +++ +
Sbjct: 156 EAVLDAGAEEVT-------DTGDG-----FVIESAASDVVEVRKALQSAGIDYDSAE-VQ 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ T +EVD E ++LI L E DDV +Y +
Sbjct: 203 FVASTDVEVDLEGALKVQKLIDALEESDDVQNIYNN 238
>gi|455643852|gb|EMF22974.1| hypothetical protein H114_29905 [Streptomyces gancidicus BKS 13-15]
Length = 462
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 114/211 (54%), Gaps = 15/211 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RMGGADPEGNPTLYDAIQKAKKQSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLAA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L++AGI +E+ + + +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVISEATDLVAVRTALQDAGIDYESAD-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAV 229
P +E+D+E + +LI L + DDV V
Sbjct: 204 PTMQVELDEEGAKKIFKLIDALEDSDDVQNV 234
>gi|430376970|ref|ZP_19431103.1| hypothetical protein MOMA_06231 [Moraxella macacae 0408225]
gi|429540107|gb|ELA08136.1| hypothetical protein MOMA_06231 [Moraxella macacae 0408225]
Length = 249
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 126/237 (53%), Gaps = 24/237 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
KQ +G +R + K G P+P +N L AVLEKA ++ KD+++R I R +
Sbjct: 16 KQDAAKGKIFTKIIREIVSAAKAGDPDPANNPRLRAVLEKANAANMTKDVIKRAIDRGAG 75
Query: 60 KGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
G +E++ YE YG GGV+++VE +TD + R+V VR GG + GSV + F
Sbjct: 76 GGDNDNMEEITYEGYGIGGVAVLVETMTDNVNRTVGDVRHAFSKNGGNLGTSGSVAYLFN 135
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
+ + + A +D ++++AL+AGA D+ E+ E VV+ +N+ +
Sbjct: 136 KRGEITVADV-ALEDTVMELALEAGASDI-----------ENDGESLL-VVTEPENFGAV 182
Query: 179 TTKLREAGIPFETDNGS-ELLPITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
L+ AGI + DN + P T+ E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 183 MDALQNAGI--KVDNAEVTMSPSTSAEITNIDDAQKILK-MIDMLEDLDDVQDVYTN 236
>gi|320093782|ref|ZP_08025629.1| YebC like protein [Actinomyces sp. oral taxon 178 str. F0338]
gi|319979283|gb|EFW10779.1| YebC like protein [Actinomyces sp. oral taxon 178 str. F0338]
Length = 253
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 118/217 (54%), Gaps = 18/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKNSVPSDNIDRAVKRGSGAEGGGANYETIMYEGYGPSG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R VV + D D+D ++
Sbjct: 96 VAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVSYLFSRRGVVEVPPADGIDEDAIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ ++AGAE+V ED D + V + + + T L+EAGI +++ +
Sbjct: 156 EAVIEAGAEEV------EDTGDG------FVVETEPQDVVAVRTALQEAGIDYDSAE-VQ 202
Query: 197 LLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
+ T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 203 FVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|408791758|ref|ZP_11203368.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira meyeri
serovar Hardjo str. Went 5]
gi|408463168|gb|EKJ86893.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira meyeri
serovar Hardjo str. Went 5]
Length = 247
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 116/215 (53%), Gaps = 17/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI--EKVYEVYGYGGV 78
K+GG + N L + KAK ++PKD +ER IK+ + G E + E +YE Y GGV
Sbjct: 37 KEGGGDQEGNPRLRLAVTKAKAANMPKDNIERAIKKGT-GGLEGMVYEECLYECYALGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+VLTDK +R+ ++ ++ GG +A+ G+V F R + +K ++ L D+
Sbjct: 96 AIMVDVLTDKKSRTTPEIKSILTKLGGSLANAGAVSRLFERKGQITLKADQISEEALFDL 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL AGAED+ VN+ Y V++ Y + + L G+ E ++ + +
Sbjct: 156 ALGAGAEDI---QVNDG---------MYTVITAPAEYEAVQSALSTKGLNME-ESEIKYI 202
Query: 199 PITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
P+TT+EV+D E E +LI L DDV V ++
Sbjct: 203 PMTTVEVNDKETAEKVMKLIDNLEANDDVQVVSSN 237
>gi|422321645|ref|ZP_16402690.1| hypothetical protein HMPREF0005_01918 [Achromobacter xylosoxidans
C54]
gi|317403476|gb|EFV83984.1| hypothetical protein HMPREF0005_01918 [Achromobacter xylosoxidans
C54]
Length = 243
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 14/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
+ GGP+P SN L +KA + ++PKD ++R I+R A +A+ E YE YG GG
Sbjct: 36 ARAGGPDPDSNPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGDAYEEVRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD TR+VA VR GG + GSV F F+ + +DQ+++
Sbjct: 96 AVIVDCMTDNRTRTVAEVRHAFAKNGGNLGQEGSVAFMFKHCGQF-VFAPGTPEDQVMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV TDE E +VV +Y + +AG+ E D G +
Sbjct: 155 ALEAGAEDVT--------TDE---EGVIEVVCAPADYAAVRKAFDDAGLKAEVD-GIVMK 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ E+ E ++L+ L LDDV VYT
Sbjct: 203 ALNETELAGEDAIKMQKLLDALESLDDVQEVYT 235
>gi|33517052|sp|Q8RAR7.2|Y1135_THETN RecName: Full=Probable transcriptional regulatory protein TTE1135
Length = 243
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 15/221 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K ++ K+GG +P +N+ L +E+AK ++P + ++R IKR + E G E +YE
Sbjct: 30 KDIIKAAKEGGGDPETNSKLKLAIERAKAFNLPSENIQRAIKRGTGELGGAKLEEVIYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-D 131
YG G +I+VE LTD R+ +R + GG + GSV + F + V+ ++ TD+ +
Sbjct: 90 YGPAGTAIIVEALTDNKNRTAGEIRHIFDRNGGTLGAAGSVTWMFDKVGVIVVEKTDSIN 149
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
++ L+ +A++AGAED D E +++++ N+ ++ + +AG +
Sbjct: 150 EEDLMMVAIEAGAEDF----------SADEGE--FEIITDPSNFQEVREAIEKAGYKI-S 196
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +LP TI++ E E ++LI KL + DDV VY +
Sbjct: 197 EAEITMLPKNTIKLSPEDYEKFEKLIDKLEDNDDVQNVYHN 237
>gi|116670851|ref|YP_831784.1| hypothetical protein Arth_2304 [Arthrobacter sp. FB24]
gi|166227722|sp|A0JXB4.1|Y2304_ARTS2 RecName: Full=Probable transcriptional regulatory protein Arth_2304
gi|116610960|gb|ABK03684.1| protein of unknown function DUF28 [Arthrobacter sp. FB24]
Length = 251
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ + KS+ + +K GGP+ N L + KAK+ VP D ++R I
Sbjct: 11 KHKKAILDSRRAKSFAKLIKNIEVAARMGGPDLAGNPSLELAVTKAKKTSVPADNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + E +YE G G ++++E LTD R+ + VR + GG +ADPGS
Sbjct: 71 KRGAGLTGEVVDYTEIMYECRGPQGSALLIECLTDNKNRAASEVRLAISRNGGTIADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R VV + +D +L LDAGAE+V +D E +++ S
Sbjct: 131 VSYLFSRKGVVTLPKNGLSEDDVLMAVLDAGAEEV-----------KDNGET-FEIHSDP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + L++AGI ++TD +E +P + +D +A + +L+ L ELDDV VY++
Sbjct: 179 KDLQAVRDALKDAGIDYDTDE-AEFVPSMEVPLDLDAAKKFMKLVDALEELDDVQNVYSN 237
>gi|354617063|ref|ZP_09034572.1| UPF0082 protein yeeN [Saccharomonospora paurometabolica YIM 90007]
gi|353218584|gb|EHB83314.1| UPF0082 protein yeeN [Saccharomonospora paurometabolica YIM 90007]
Length = 249
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P +N L ++KAK+ VP+D +ER +R + E G + YE Y G
Sbjct: 36 ARTGGGDPEANPTLYDAIQKAKKNSVPQDNIERARRRGNGEEAGGADWQNITYEGYAPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ + VR + GG +AD GSV + F R VV + D +D +L
Sbjct: 96 VAVLIECLTDNKNRAASEVRTALSRNGGTLADAGSVAYLFNRRGVVLMPKNDLSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E ++++S + + T L+EAG +E+ + S
Sbjct: 156 AVLDAGAEEV-------NDLGES-----FEILSAPGDLVSVRTALQEAGYDYESADTS-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP + +D E LI L + DDV VY +
Sbjct: 203 LPSVNVPLDAEGARKVFRLIDALEDCDDVQNVYAN 237
>gi|358062982|ref|ZP_09149611.1| hypothetical protein HMPREF9473_01673 [Clostridium hathewayi
WAL-18680]
gi|356698845|gb|EHI60376.1| hypothetical protein HMPREF9473_01673 [Clostridium hathewayi
WAL-18680]
Length = 242
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D ++R IK+A+ E + YE YG GV
Sbjct: 36 VKEGGADPANNSKLRDVIAKAKANNMPNDTIDRGIKKAAGDANSVNYEVLTYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR G + PGSV + F + +++ + + D D+L+
Sbjct: 96 AIIVDTLTDNKNRTAANVRSAFTKGSGNVGTPGSVSYMFDKKGQIIIDKEECEMDPDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP-FETDNGS 195
ALDAGAED E E+D+ +++++ D+++ + L AGIP E D
Sbjct: 156 MAALDAGAEDFAE----EEDS--------FEILTAPDDFSAVREALEAAGIPMMEAD--V 201
Query: 196 ELLPITTIEVDDE 208
++P T +E+DDE
Sbjct: 202 TMIPQTWVELDDE 214
>gi|344942859|ref|ZP_08782146.1| UPF0082 protein yeeN [Methylobacter tundripaludum SV96]
gi|344260146|gb|EGW20418.1| UPF0082 protein yeeN [Methylobacter tundripaludum SV96]
Length = 248
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK GP+ SN L ++KA ++ +D ++ IK+AS + E V YE YG GG
Sbjct: 36 VKTSGPDAASNPALRTAVDKALGANMRRDTIDTAIKKASGALEGVNYEVVRYEGYGPGGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ LTD R+V VR GG + GSV + F + +++ + D+D L++
Sbjct: 96 AVMVDCLTDNRNRTVGEVRHAFSKAGGNLGTDGSVAYLFSKIGILSYAPS-VDEDALMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDVI VN+D + V++T ++Y ++ L AG FE DN +
Sbjct: 155 ALEAGAEDVI---VNDDGS--------VDVMTTPESYLEVKDALVAAG--FEPDNAEVTM 201
Query: 199 PITTI-EVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ E+D E E LI +L +LDDV VY++
Sbjct: 202 QAATMTELDAEGAEKMMRLIDRLEDLDDVQNVYSN 236
>gi|238019729|ref|ZP_04600155.1| hypothetical protein VEIDISOL_01604 [Veillonella dispar ATCC 17748]
gi|237863770|gb|EEP65060.1| hypothetical protein VEIDISOL_01604 [Veillonella dispar ATCC 17748]
Length = 245
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 111/201 (55%), Gaps = 23/201 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-----QEAFIEKVYEVYG 74
+ GG +PT N L L+KA+E ++PKD NI+RA +KG A+ E VYE YG
Sbjct: 36 ARMGGADPTGNMRLKLALQKARENNIPKD----NIQRAIDKGVGATDMNAYEEIVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ VEV+TD R+ A VR GG + + G V + F+ V I D+D+
Sbjct: 92 PAGVAVTVEVMTDNRNRAAADVRHAFSKQGGNLGESGCVGWMFKSKGVFVIDKEGHDEDE 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L +AL+AGAED+ +EDD +++ +T ++Y + L +AGI E
Sbjct: 152 LTMLALEAGAEDL----KSEDDV--------FEIYTTPEDYDAVEAALADAGIETEVAKI 199
Query: 195 SELLPITTIEV-DDEAMELNK 214
+ ++P TTIE+ D+A+++ K
Sbjct: 200 T-MIPDTTIELTGDDAVKMQK 219
>gi|213964215|ref|ZP_03392449.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
gi|213953134|gb|EEB64482.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
Length = 239
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 13/211 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGP+P SN+ L AV++ AK ++PK+ +ER IK+ASEK + E ++E Y G++
Sbjct: 34 VKEGGPHPESNSRLRAVIQNAKAANMPKENIERAIKKASEKDTANYKEVLFEGYAPHGIA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+++E TD R+VA +R C G + GSV F F I T D ++L
Sbjct: 94 VLIETATDNNNRTVANIRSYFNKCNGTLGTSGSVEFMFDHTCNFRINATGIDPEELELEM 153
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+D GAE+V V+ED + + +++ I +L GI +G E +P
Sbjct: 154 IDFGAEEVF---VDEDGI---------LIYAPFESFGAIQKELESRGIEI-LSSGFERIP 200
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
T E+ E ++L+ K+ E +DV VY
Sbjct: 201 QVTKELTPEEQADVEKLLEKIEEDEDVQNVY 231
>gi|145588803|ref|YP_001155400.1| hypothetical protein Pnuc_0618 [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|189040566|sp|A4SWH2.1|Y618_POLSQ RecName: Full=Probable transcriptional regulatory protein Pnuc_0618
gi|145047209|gb|ABP33836.1| protein of unknown function DUF28 [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 239
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K GG + T+N L ++KAK+ ++P D V+R I+R + + E++ YE YG G
Sbjct: 36 AKMGGGDLTANPRLRLAIDKAKDANMPNDNVQRAIQRGTGSLEGVNYEEIRYEGYGMNGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ LTD TR+VA VR GG M GSV F F+ + + +DQL+++
Sbjct: 96 AIIVDCLTDNRTRTVAEVRHAFNKNGGNMGTEGSVAFLFKHCGQM-LFAPGTSEDQLMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
ALDAGAEDVI T +D + +V++ +++ + + +AG+ E + +
Sbjct: 155 ALDAGAEDVI--------THDDGS---LEVLTPVPDFSKVQDAISQAGLKAELATVA-MR 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T I ++ + E ++L+ L LDDV V+T+
Sbjct: 203 PETEIALEGDQAESMQKLLDALENLDDVQEVFTN 236
>gi|336426918|ref|ZP_08606926.1| hypothetical protein HMPREF0994_02932 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010558|gb|EGN40541.1| hypothetical protein HMPREF0994_02932 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 242
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 17/217 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GG +P++N LA V+ KAK ++P D ++R IK+A+ + G + YE YG G+
Sbjct: 36 VKEGGSDPSNNFKLAQVIAKAKANNMPNDTIDRGIKKAAGDMGNVNYEYVTYEGYGPNGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF--RRARVVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR G + PG V F F R +++ + D + D L+
Sbjct: 96 AIIVDALTDNKNRTAANVRSAFTKGNGSIGTPGCVSFMFDKRGQIIIDKEECDMEADDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
ALDAGAED E E+D+ +++++ D+ + L EAGI + +
Sbjct: 156 MTALDAGAEDFSE----EEDS--------FEILTAPDDLETVQKALEEAGIAMASAEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVYTD 232
++P +E+ DE N LL+ DDV AVY +
Sbjct: 203 MIPQNYVELTDETAIKNLNRTLDLLDAEDDVQAVYHN 239
>gi|398305394|ref|ZP_10508980.1| hypothetical protein BvalD_08028 [Bacillus vallismortis DV1-F-3]
Length = 239
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G P+P SN L VLE+AK VPK+I+ER I++A +E+F E Y
Sbjct: 26 FGREIYVA-AKQGEPDPESNQALKVVLERAKTYSVPKNIIERAIEKAKGGAEESFDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+V+ LT+ + R+ VR GG M GSV + F V+ + A
Sbjct: 85 EGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVDGKSA 144
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D+ + + D D++E EDD+ V + D + + + AG+
Sbjct: 145 DEALEILMEADVDVRDILE----EDDS--------AIVYAEPDQFHAVQEAFKNAGVEEF 192
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +L + +E+ D+A E ++LI L +L+DV VY +
Sbjct: 193 TVAELTMLAQSEVELPDDAKEQFEKLIDALEDLEDVQQVYHN 234
>gi|377556723|ref|ZP_09786411.1| UPF0082 protein [Lactobacillus gastricus PS3]
gi|376167784|gb|EHS86607.1| UPF0082 protein [Lactobacillus gastricus PS3]
Length = 243
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 107/213 (50%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
+ G P+P +N L V++KA+ ++PK ++R I +A+ G F E YE YG GGV+
Sbjct: 36 ARAGDPDPANNPQLRLVMDKARAANMPKQNIQRAIDKATGAGGANFEEITYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK--DQLLD 137
++V LTD R+ +A+R GG + GSV + F R ++ I D DK D++L
Sbjct: 96 VMVSCLTDNKNRTASAIRSAFTHSGGSLGANGSVSYMFNRQGLIEILREDLDKDEDEMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ E + + + + T + L+ G ET + +
Sbjct: 156 DALDAGADDM------------QADEEMFHIYTDPSSMTAVRDALQADGYELETAEVT-M 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+P EV + + + LI +L E DDV VY
Sbjct: 203 IPENKTEVPSDKVSQYQHLIDELEENDDVADVY 235
>gi|20807595|ref|NP_622766.1| hypothetical protein TTE1135 [Thermoanaerobacter tengcongensis MB4]
gi|20516134|gb|AAM24370.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 245
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 15/221 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K ++ K+GG +P +N+ L +E+AK ++P + ++R IKR + E G E +YE
Sbjct: 32 KDIIKAAKEGGGDPETNSKLKLAIERAKAFNLPSENIQRAIKRGTGELGGAKLEEVIYEG 91
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-D 131
YG G +I+VE LTD R+ +R + GG + GSV + F + V+ ++ TD+ +
Sbjct: 92 YGPAGTAIIVEALTDNKNRTAGEIRHIFDRNGGTLGAAGSVTWMFDKVGVIVVEKTDSIN 151
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
++ L+ +A++AGAED D E +++++ N+ ++ + +AG +
Sbjct: 152 EEDLMMVAIEAGAEDF----------SADEGE--FEIITDPSNFQEVREAIEKAGYKI-S 198
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +LP TI++ E E ++LI KL + DDV VY +
Sbjct: 199 EAEITMLPKNTIKLSPEDYEKFEKLIDKLEDNDDVQNVYHN 239
>gi|365887733|ref|ZP_09426554.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
gi|365336645|emb|CCD99085.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
Length = 248
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVVAARAENMPKDNIERAIKKALGGEGENYAEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRVGIIEFDRSVASDDAVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
++AGA+DVI E ++V ++ D++ ++ L R+A + ++
Sbjct: 156 IEAGADDVIS------------GEGGHEVYASPDSFHEVAKNLEAKFGEPRKAALTWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 202 ------PQNTVSVDDETGEKLVKLMDLLNEHDDVQNVYAN 235
>gi|315604288|ref|ZP_07879354.1| YebC like protein [Actinomyces sp. oral taxon 180 str. F0310]
gi|315313994|gb|EFU62045.1| YebC like protein [Actinomyces sp. oral taxon 180 str. F0310]
Length = 253
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 18/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKRGSGAEAGGANYETIMYEGYGPSG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R VV + D D++ ++
Sbjct: 96 VAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVSYLFSRRGVVEVPAADGVDEESIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
LDAGAE+V ED E + + S + + + L+EAGI +++ +
Sbjct: 156 MAVLDAGAEEV-----------EDAGE-LFVIESDPKDVVAVRSALQEAGIDYDSAE-VQ 202
Query: 197 LLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
+ T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 203 FVASTEVELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|146338239|ref|YP_001203287.1| hypothetical protein BRADO1143 [Bradyrhizobium sp. ORS 278]
gi|166228892|sp|A4YMC4.1|Y1143_BRASO RecName: Full=Probable transcriptional regulatory protein BRADO1143
gi|146191045|emb|CAL75050.1| conserved hypothetical protein; YebC-like [Bradyrhizobium sp. ORS
278]
Length = 248
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVVAARAENMPKDNIERAIKKALGGEGENYAEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRVGIIEFDRSVASDDSVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
++AGA+DVI E ++V ++ D++ ++ L R+A + ++
Sbjct: 156 IEAGADDVIS------------GEGGHEVYASPDSFHEVAKNLEAKFGEPRKAALTWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 202 ------PQNTVAVDDETGEKLVKLMDLLNEHDDVQNVYAN 235
>gi|452960682|gb|EME65997.1| hypothetical protein G352_07168 [Rhodococcus ruber BKS 20-38]
Length = 250
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + E G + YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGGADWQTITYEGYGPSGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG MADPGSV + F R VV ++ +D++L++
Sbjct: 97 AVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGVVVLEKNGRTEDEILEV 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAE++ D D ++VVS + + + T L EAGI +E+ + +
Sbjct: 157 VLEAGAEEI------NDLGDS------FEVVSEAGDLIAVRTALVEAGIDYESAD-PDFR 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD ++ +L+ L + DDV VYT+
Sbjct: 204 ASVEVPVDADSARKVFKLVDALEDSDDVQNVYTN 237
>gi|295396079|ref|ZP_06806262.1| YebC like protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971020|gb|EFG46912.1| YebC like protein [Brevibacterium mcbrellneri ATCC 49030]
Length = 253
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP D +ER +KR + + G + +YE Y GGV
Sbjct: 37 RNGGADVAGNPTLYDAIQKAKKSSVPNDNIERAVKRGAGLDGGGVDYQTIMYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR V G MADPGSV + F R VV + +D +L+
Sbjct: 97 ALLIECLTDNRNRAASEVRVAVTRNNGSMADPGSVSYNFNRKGVVAVPVEGTSEDAILEA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D D +V+S + + + T L+EA I +++ + +
Sbjct: 157 TLDAGAEEV------KDQGD------ILEVISEATDLVAVRTALQEADIDYDSAE-ARFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +++D E + LI L +LDDV V+T+
Sbjct: 204 PNLEVQLDAETAKKVFTLIDALEDLDDVQNVFTN 237
>gi|398311640|ref|ZP_10515114.1| hypothetical protein BmojR_20127 [Bacillus mojavensis RO-H-1]
Length = 239
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 120/216 (55%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K+GG +P +N+ L V+EKAK ++P + ++R +K+A+ ++ E++ YE YG G+
Sbjct: 36 AKQGGADPEANSALRLVIEKAKGANMPNENIDRALKKAAGSQDDSSYEEITYEGYGPSGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD--ADKDQLL 136
+++VE LTD R+ VR GG + + G V F F R + I T+ ++D+L+
Sbjct: 96 AVMVECLTDNKNRTATNVRTAFNKNGGSLGESGCVAFLFERKGYIAIDRTERQIEEDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++AG E++ E Y++V+S + + + L EA P ++ +
Sbjct: 156 LDVIEAGGEEL------------RTEEEYFEVLSAPERFEKVKAAL-EADYPVDSAEVT- 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T +VDDEA+E ++LI L + DDV AVYT+
Sbjct: 202 MIPKTYADVDDEAVEKLEKLIDTLEDDDDVQAVYTN 237
>gi|159037404|ref|YP_001536657.1| hypothetical protein Sare_1779 [Salinispora arenicola CNS-205]
gi|189039010|sp|A8LWZ6.1|Y1779_SALAI RecName: Full=Probable transcriptional regulatory protein Sare_1779
gi|157916239|gb|ABV97666.1| protein of unknown function DUF28 [Salinispora arenicola CNS-205]
Length = 249
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKNSVPNDNIDRAVKRGSGLEAGGADYQTVMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG AD GSV + F R VV + +D ++
Sbjct: 97 ALLIECLTDNRNRAATEVRTALTRNGGSFADAGSVSYLFSRKGVVIVAKAGTTEDDVMLA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + T L++AGI +E+ S L+
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVLSEPGDLVAVRTALQDAGIEYESAE-SSLV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ +D++ +LI L + DDV VY +
Sbjct: 204 PSVSVPLDEDGARKILKLIDVLEDSDDVQNVYAN 237
>gi|291300122|ref|YP_003511400.1| hypothetical protein Snas_2629 [Stackebrandtia nassauensis DSM
44728]
gi|290569342|gb|ADD42307.1| protein of unknown function DUF28 [Stackebrandtia nassauensis DSM
44728]
Length = 251
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S + G + +YE Y GGV
Sbjct: 37 RTGGGDPDGNPTLYDAIQKAKKNSVPNDNIDRAVKRGSGADGGGVDYQTIMYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
++++E LTD R+ A VR + GG++ADPGSV + F R VV + TD +D +L
Sbjct: 97 AVLIECLTDNRNRAAAEVRTALTRNGGQLADPGSVAYNFNRKGVVIVPKTDGLTEDDVLM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E ++V+S + + + T L EAG +E+ S
Sbjct: 157 AVLDAGAEEV-------NDLGES-----FEVISEATDLVAVRTALVEAGNDYESAEAS-F 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T+ ++++ ++I L + DDV V+ +
Sbjct: 204 VPSVTVPLEEDGARKILKVIEALEDSDDVQNVWAN 238
>gi|167037422|ref|YP_001665000.1| hypothetical protein Teth39_1009 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040089|ref|YP_001663074.1| hypothetical protein Teth514_1449 [Thermoanaerobacter sp. X514]
gi|256752594|ref|ZP_05493448.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914172|ref|ZP_07131488.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X561]
gi|307724592|ref|YP_003904343.1| hypothetical protein Thet_1453 [Thermoanaerobacter sp. X513]
gi|320115835|ref|YP_004185994.1| hypothetical protein Thebr_1035 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|226734048|sp|B0K951.1|Y1009_THEP3 RecName: Full=Probable transcriptional regulatory protein
Teth39_1009
gi|226734168|sp|B0K0L3.1|Y1449_THEPX RecName: Full=Probable transcriptional regulatory protein
Teth514_1449
gi|166854329|gb|ABY92738.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X514]
gi|166856256|gb|ABY94664.1| protein of unknown function DUF28 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256748532|gb|EEU61582.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889107|gb|EFK84253.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X561]
gi|307581653|gb|ADN55052.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X513]
gi|319928926|gb|ADV79611.1| protein of unknown function DUF28 [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 246
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 15/221 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K ++ K+GG +P +N+ L +EKAK ++P + ++R IK+ + E G E +YE
Sbjct: 30 KDIIKAAKEGGGDPNTNSKLRDAIEKAKANNLPNENIQRAIKKGTGELGGANLEEVIYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDAD 131
YG G +I+VE LTD R+ +R + GG + GSV + F + ++ + K D
Sbjct: 90 YGPSGTAIIVEALTDNKNRTAGEIRHIFDRHGGSLGAAGSVTWMFDKVGIIIVEKDNSID 149
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
+D+L +A+DAGA+D + ED +++++ N+ ++ + +AG +
Sbjct: 150 EDELAMVAIDAGAQDF---------SAEDEE---FEIITEPSNFQEVKEAIEKAGYKI-S 196
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +LP TI++ E E ++LI KL E DDV VY +
Sbjct: 197 EAEVTMLPKNTIQLSPEDYEKFEKLIDKLEENDDVQNVYHN 237
>gi|365866638|ref|ZP_09406246.1| hypothetical protein SPW_6550 [Streptomyces sp. W007]
gi|364003911|gb|EHM25043.1| hypothetical protein SPW_6550 [Streptomyces sp. W007]
Length = 235
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 22 RSGGVDPDGNPTLVDAIQKAKKSSVPNKNIDSAVKRGGGLEAGGADYETIMYEGYGPNGV 81
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 82 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLGA 141
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++VVS + + + T L+EAGI +++ + L
Sbjct: 142 VLDAGAEEV-------NDLGE-----TFEVVSEATDMVAVRTALQEAGIDYDSAE-ANFL 188
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+++E +LI L + DDV V+ +
Sbjct: 189 PTMQVELEEEGARKIFKLIDALEDSDDVQNVFAN 222
>gi|396584018|ref|ZP_10484520.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
ICM47]
gi|395548443|gb|EJG15706.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces sp.
ICM47]
Length = 253
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 117/216 (54%), Gaps = 18/216 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKRGSGAEAGGANYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+ +VE LTD R+ + VR GG +ADPGSV + F R VV + D D++ ++
Sbjct: 97 AFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVSYLFSRRGVVEVPAADGVDEESIMM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V ED D + + S + + T L+EAGI +++ +
Sbjct: 157 AVLDAGAEEV------EDAGD------LFVIESDPKDVVAVRTALQEAGIDYDSAE-VQF 203
Query: 198 LPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
+ T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 204 VASTEVELDLEGALKVNK-LIDVLEDSDDVQNIYTN 238
>gi|374708717|ref|ZP_09713151.1| hypothetical protein SinuC_00760 [Sporolactobacillus inulinus CASD]
Length = 243
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 127/242 (52%), Gaps = 23/242 (9%)
Query: 1 MQRKQSCIRGWGRKSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
+Q K++ + K ++R + GG +P+ N+ L +EKAK ++P D + R
Sbjct: 10 IQHKKNAVDAARGKIFMRLSKDIFLEARHGGGDPSMNSGLRHAIEKAKAANMPNDNISRA 69
Query: 54 IKRASEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
IK+A+ E++ YE YG GGV+++V+VLTD RS + +R GG + + GS
Sbjct: 70 IKKATGDLDGVTYEEITYEGYGPGGVAVMVDVLTDNRNRSASDIRHAFTKSGGNLGESGS 129
Query: 113 VMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 171
V F F + ++ I+ D D+D ++ A+DAGAED+ T++DR + +++T
Sbjct: 130 VGFLFDKQGIIEIEKNDELDEDTMMMDAIDAGAEDM--------KTEDDR----FIIITT 177
Query: 172 SDNYTDITTKLREAGIPFETDNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
D + D+ L E +E D ++P T + + +E + LI L + DDV +Y
Sbjct: 178 PDVFEDVRKALSEDK-GYEVDRAEVAMIPTTKTALTGKDLEKMRTLIEVLEDNDDVQDIY 236
Query: 231 TD 232
T+
Sbjct: 237 TN 238
>gi|148258118|ref|YP_001242703.1| hypothetical protein BBta_6910 [Bradyrhizobium sp. BTAi1]
gi|166228831|sp|A5ERK3.1|Y6910_BRASB RecName: Full=Probable transcriptional regulatory protein BBta_6910
gi|146410291|gb|ABQ38797.1| hypothetical protein BBta_6910 [Bradyrhizobium sp. BTAi1]
Length = 248
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVVAARAENMPKDNIERAIKKALGGEGENYAEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRVGIIEFDRSVASDDAVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
++AGA+DVI E ++V ++ D++ ++ L R+A + ++
Sbjct: 156 IEAGADDVIS------------GEGGHEVYASPDSFHEVAKNLEAKFGEPRKAALTWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 202 ------PQNTVSVDDETGEKLLKLMDLLNEHDDVQNVYAN 235
>gi|296331673|ref|ZP_06874142.1| hypothetical protein BSU6633_11223 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675368|ref|YP_003867040.1| hypothetical protein BSUW23_13470 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151268|gb|EFG92148.1| hypothetical protein BSU6633_11223 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413612|gb|ADM38731.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 240
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 123/216 (56%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K+GG +P +N+ L V+EKAK ++P + ++R IK+A+ + E++ YE YG G+
Sbjct: 36 AKEGGADPEANSALRLVIEKAKGANMPNENIDRAIKKAAGSLDGSSYEEITYEGYGPSGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD--ADKDQLL 136
+++VE +TD R+ + VR GG + + G V F F R + I TD ++D+L+
Sbjct: 96 AVMVECVTDNKNRTASNVRTAFNKNGGSLGESGCVAFLFERKGFIAIDRTDRQIEEDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
L+AG E++ T+ED+ Y+V++ D + ++ T L+ + P + +
Sbjct: 156 LDVLEAGGEEL--------QTEEDQ----YEVLTEPDRFEEVKTALK-SKYPISSAEVT- 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+LP T + DD+A+E ++LI+ L + DDV VYT+
Sbjct: 202 MLPKTYADADDQAVEKLEKLISILEDDDDVQEVYTN 237
>gi|90418962|ref|ZP_01226873.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337042|gb|EAS50747.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 249
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 105/213 (49%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P+ N L + AK +PKD ++R IK+AS E + E YE YG GGV+
Sbjct: 36 AKSGLPDPSMNARLRLAINNAKAQSMPKDNIDRAIKKASGGDSENYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE LTD R+ + VR GG M + GSV F F + + D D +++ A
Sbjct: 96 IIVEALTDNRNRTASNVRSCFTKAGGSMGETGSVSFMFDHVGEIVYPLSAGDADTVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ AGA+DVI E + +V+ ++ D++T L E+ E+ + P
Sbjct: 156 ILAGADDVISD------------ENGHTIVTAFEDIGDVSTALEESLGEAESVRPT-WRP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T VD++ E LI L + DDV VY +
Sbjct: 203 QTGTPVDEDKAESVMRLIGNLDDDDDVQNVYAN 235
>gi|291440762|ref|ZP_06580152.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291343657|gb|EFE70613.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 250
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RMGGADPEGNPTLYDAIQKAKKQSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + +D +L
Sbjct: 97 AVLIECLTDNRNRAASEVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKDGLTEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + T L++AGI +E+ + + +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVLSEPTDLVAVRTALQDAGIDYESAD-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E + +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGAKKIFKLIDALEDSDDVQNVFAN 237
>gi|148272998|ref|YP_001222559.1| hypothetical protein CMM_1817 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|166219526|sp|A5CS09.1|Y1817_CLAM3 RecName: Full=Probable transcriptional regulatory protein CMM_1817
gi|147830928|emb|CAN01872.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 255
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 120/242 (49%), Gaps = 23/242 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I KS+ + +K GG + + N L ++KAK+ VP D ++R +
Sbjct: 11 KHKKAIIDSRRAKSFAKLIKNIEVAAKIGGADMSGNPTLVDAVQKAKKTSVPNDNIDRAV 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + +YE Y GV+++VE LTD R+ A VR + GG MADPGS
Sbjct: 71 KRGAGLLGEVVDYQTIMYEGYAASGVAMLVECLTDNKNRAAAEVRTAMSRNGGTMADPGS 130
Query: 113 VMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 171
V + F R V+ + +A +D +L LDAGAEDV D E +
Sbjct: 131 VAYNFHRKGVIAVPHDEAPTEDDVLAAVLDAGAEDVT-----------DHGEVFEIRCEP 179
Query: 172 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
SD + L+EAGI +++ + E +P +EVD E +L+ + +LDDV +Y
Sbjct: 180 SDMVA-VRQALQEAGIDYDSAD-VEFVPQVKVEVDLETARKVNKLVDAMEDLDDVQNIYV 237
Query: 232 DQ 233
+
Sbjct: 238 NS 239
>gi|392954891|ref|ZP_10320442.1| hypothetical protein WQQ_45140 [Hydrocarboniphaga effusa AP103]
gi|391857548|gb|EIT68079.1| hypothetical protein WQQ_45140 [Hydrocarboniphaga effusa AP103]
Length = 239
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
V+ GP+P N L + +A ++++ KD +E IKRAS +G +A E YE YG GG++
Sbjct: 33 VRASGPDPAGNPRLRLAVSRALDVNMTKDKIETAIKRASGEGADAQQEVRYEGYGPGGIA 92
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVV--NIKFTDADKDQLLD 137
++V+ +TD TR+VA VR GG M GSV F+F A + ++ ++++L+
Sbjct: 93 VIVDCVTDNPTRTVADVRHAFSKHGGNMGTSGSVAFQFAEAGQLWFDVSANPELEEKILE 152
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
IAL+AGA+DV TD + +VV+ D + + L +A + ++
Sbjct: 153 IALEAGADDV--------QTDGG----WCEVVTQPDVFETVRKALVDAKLEPAQARVTQ- 199
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + V+ EA E ++LI +L ELDD VY +
Sbjct: 200 RPSNRVAVEGEAAETLQKLIDRLEELDDTQEVYHN 234
>gi|429123753|ref|ZP_19184285.1| hypothetical protein A966_05658 [Brachyspira hampsonii 30446]
gi|426280322|gb|EKV57337.1| hypothetical protein A966_05658 [Brachyspira hampsonii 30446]
Length = 247
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGG-PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG P+P N L V+ KAK ++P D ++R IKR + G+ A IE++ YE Y GG
Sbjct: 36 VKEGGSPDPDQNARLRMVIVKAKGTNMPNDNIDRAIKRGAGAGEGANIEEMSYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I+V+V TD R+ A +R + GG +A+ G+V ++F++ VV I ++ L+D
Sbjct: 96 VAIIVDVATDNKNRTAAEIRSIFSKNGGNLAENGAVSWQFKKKAVVIIPAAGNTEESLMD 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
I LDAGAED+ ++ E + + + + I L+ GI E+ +
Sbjct: 156 IVLDAGAEDI------------EQDEEVFTITGPMEALSSIVDALKAKGIEPESAEIVRV 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +++A ++ K +I + DDV AV T+
Sbjct: 204 ADNTMTIAENDAKKVMK-IIGLFEDHDDVSAVATN 237
>gi|317508676|ref|ZP_07966331.1| hypothetical protein HMPREF9336_02703 [Segniliparus rugosus ATCC
BAA-974]
gi|316252997|gb|EFV12412.1| hypothetical protein HMPREF9336_02703 [Segniliparus rugosus ATCC
BAA-974]
Length = 251
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GG +P N L + KA++ VP D +ER KR + E G + YE YG GG ++
Sbjct: 39 GGGDPDGNPTLYDAIVKARKNSVPNDNIERARKRGAGEEAGGSDWQSLFYEGYGPGGTAL 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
VE LTD R+ VR + GG +ADPGSV F F R VV ++ + +D LL + L
Sbjct: 99 YVECLTDNRNRAAGEVRTALSRNGGTLADPGSVSFLFARKGVVLVEKGNLTEDDLLGVVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AG E+V + N ++V+S ++ + LR I +E+ E P+
Sbjct: 159 EAGVEEVNDLGDN------------FEVLSDPSDFPAVRDALRGENIEYESAE-VEFQPL 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +EVD E +L+ L + DDV V+T+
Sbjct: 206 SKVEVDLETARKALKLVDALEDCDDVQNVFTN 237
>gi|253578409|ref|ZP_04855681.1| hypothetical protein RSAG_00642 [Ruminococcus sp. 5_1_39B_FAA]
gi|251850727|gb|EES78685.1| hypothetical protein RSAG_00642 [Ruminococcus sp. 5_1_39BFAA]
Length = 243
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGV 78
VK GGP+P +N+ L V+ KAK ++P D +ER IK+A+ EK VYE YG GV
Sbjct: 36 VKAGGPDPNNNSKLRDVIAKAKANNMPNDTIERGIKKAAGADSADNYEKAVYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
+I+VE LTD R+ VR G + G V MF + +++ + + D D+++
Sbjct: 96 AIIVETLTDNKNRTAGNVRNAFTKGNGSIGTQGCVSYMFDQKGQIIIDKEECEMDADEIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ALDAGAED E E+D+ Y++++ D+++ + L +AG+P +
Sbjct: 156 MLALDAGAEDFSE----EEDS--------YEILTAPDDFSAVREALEKAGLPI-AEAQVA 202
Query: 197 LLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 203 MIPQTYVELTDE 214
>gi|254557054|ref|YP_003063471.1| hypothetical protein JDM1_1887 [Lactobacillus plantarum JDM1]
gi|300768047|ref|ZP_07077953.1| glucose-1-phosphate adenylyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|380032985|ref|YP_004889976.1| YebC/PmpR family DNA-binding regulatory protein [Lactobacillus
plantarum WCFS1]
gi|418275780|ref|ZP_12891103.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448821760|ref|YP_007414922.1| putative transcriptional regulatory protein [Lactobacillus
plantarum ZJ316]
gi|33517009|sp|Q88V33.1|Y2253_LACPL RecName: Full=Probable transcriptional regulatory protein lp_2253
gi|254045981|gb|ACT62774.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
gi|300494396|gb|EFK29558.1| glucose-1-phosphate adenylyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|342242228|emb|CCC79462.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
plantarum WCFS1]
gi|376009331|gb|EHS82660.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448275257|gb|AGE39776.1| putative transcriptional regulatory protein [Lactobacillus
plantarum ZJ316]
Length = 242
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 18/221 (8%)
Query: 13 RKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEV 72
R+ Y+ VK GGP+P SN L V++KAK ++PKD ++R + + S G E + E YE
Sbjct: 30 RELYMA-VKAGGPDPDSNAQLRLVMDKAKAANMPKDNIKRAVDKGSGSGAENYEEVTYEG 88
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GG++++V LTD R+ AAVR GG +A G+V + F R + I D D
Sbjct: 89 YGPGGIAVLVHALTDNKNRTAAAVRSAFTHHGGALAATGAVSYMFDRKGYIVISREDLDT 148
Query: 133 DQ---LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
D+ L+D+ LDAG +D+ ++ +++ + + L G
Sbjct: 149 DEDTMLMDV-LDAGGDDL------------QSSDEAFEIYTDPKQLAAVRDALEANGYKL 195
Query: 190 ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
ET + ++P +V + +E + +I +L + DDV VY
Sbjct: 196 ETAELT-MIPENLTDVPADKVEKLQHMIDELEDNDDVSEVY 235
>gi|379007122|ref|YP_005256573.1| hypothetical protein [Sulfobacillus acidophilus DSM 10332]
gi|361053384|gb|AEW04901.1| UPF0082 protein yeeN [Sulfobacillus acidophilus DSM 10332]
Length = 247
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 22/224 (9%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI---EKVY 70
K + K+GG NP +N L +EKAK ++P +ER I+RA+ GQEA + E VY
Sbjct: 30 KEIMAAAKRGGGNPDTNFKLRIAIEKAKANNLPAANIERAIRRAT--GQEAGVHYEEAVY 87
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E YG GG +I +++LTD R+ +R + GG + + G V + F + I TD
Sbjct: 88 EGYGPGGTAIYMDILTDNRNRTAGEIRHIFSRHGGSLGETGCVAWMFEPKGRLVITQTDL 147
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
+++LLDIA++AGA+D+ EDD Y V++ D + + GIP +
Sbjct: 148 TEEELLDIAIEAGADDL----AREDDE--------YVVLTAPDVLDLVRQAFEDRGIPVD 195
Query: 191 TDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EL LP TT+ V+ E EL+ L + DDV VY++
Sbjct: 196 E---AELVRLPKTTVAVEGREAEQLMELLELLEDHDDVQRVYSN 236
>gi|336398381|ref|ZP_08579181.1| UPF0082 protein yeeN [Prevotella multisaccharivorax DSM 17128]
gi|336068117|gb|EGN56751.1| UPF0082 protein yeeN [Prevotella multisaccharivorax DSM 17128]
Length = 247
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 20/240 (8%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK + ++ WG K VK GGP P +N L A++ K ++PKD ++R
Sbjct: 8 RKATKLKRWGHMARTFTKLGKEIAIAVKAGGPEPENNPRLRAIIATCKRENMPKDNIQRA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK A K Q + E YE YG GV+I+V+ LTD TR+VA VR V G + GS+
Sbjct: 68 IKNAMGKDQSEYKEVTYEGYGPHGVAILVDTLTDNTTRTVADVRSVFNKFSGNLGTTGSL 127
Query: 114 MFKFRRARVVNIK-FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
F F V + K D D+L+ +D G ED E DTDE+ E +
Sbjct: 128 SFLFDHKAVFSFKPKADTAMDELILDLIDYGVED-------EYDTDEESGE--VTIYGEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ DI L + G T +P ++ + E ++++ KL + DDV VYT+
Sbjct: 179 TSFGDIQKYLEDNGYEI-TSAEFTYIPNDLTDIPADQRETIEKMVEKLDDFDDVQNVYTN 237
>gi|290967722|ref|ZP_06559277.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera
genomosp. type_1 str. 28L]
gi|290782238|gb|EFD94811.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera
genomosp. type_1 str. 28L]
Length = 241
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 22/218 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +P N L L+KAKE ++PK+ NIKRA +KG A + E VYE YG
Sbjct: 36 VRMGGADPVGNMRLKLALQKAKENNIPKE----NIKRAIQKGAGATEGQNYEEIVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ V VLTD R+ A VR V G M + G V + F + + D+D
Sbjct: 92 PAGVAVTVNVLTDNRNRTAADVRHVFSKYGSSMGETGCVGWMFHSKGIFIVDKAVTDEDT 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
++++ALDAGA+DV + +++++ +N+ + L E I E
Sbjct: 152 VMELALDAGADDV------------KTGDEEFEIITAPENFDSVEKALAEHNIATEHAQI 199
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P I+++ E E + LI L +LDDV VY +
Sbjct: 200 T-MVPDNLIKLNAEDAEKMETLIDALEDLDDVQDVYHN 236
>gi|421788212|ref|ZP_16224521.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-82]
gi|226734885|sp|A3M4T0.2|Y1496_ACIBT RecName: Full=Probable transcriptional regulatory protein A1S_1496
gi|193077146|gb|ABO11924.2| hypothetical protein A1S_1496 [Acinetobacter baumannii ATCC 17978]
gi|410403654|gb|EKP55736.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-82]
Length = 249
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-S 58
KQ RG Y+R + K GG +P SN L AV+EKA +++ +D + R I+R
Sbjct: 16 KQDASRGKVFTKYIREIVTAAKLGGADPASNPRLRAVVEKALSVNMTRDTINRAIQRGVG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTAGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++D+AL+AGAED+ V+ED+ V+++ + + +
Sbjct: 136 KRG--EITFDDISLEDKIMDVALEAGAEDI---EVSEDE---------ILVITSPETFGE 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K LI L +LDDV VYT+
Sbjct: 182 VQDALAAAGL--KSDNAEVVMSPSTKAEITDIDQAKQVMK-LIDMLEDLDDVQNVYTN 236
>gi|345876117|ref|ZP_08827894.1| hypothetical protein l11_19820 [Neisseria weaveri LMG 5135]
gi|417956833|ref|ZP_12599772.1| hypothetical protein l13_01780 [Neisseria weaveri ATCC 51223]
gi|343967338|gb|EGV35585.1| hypothetical protein l11_19820 [Neisseria weaveri LMG 5135]
gi|343969962|gb|EGV38164.1| hypothetical protein l13_01780 [Neisseria weaveri ATCC 51223]
Length = 242
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 24/221 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE-----AFIEKVYEVYG 74
K GG +P SN L ++KA + ++PKD NI+RA +KG +IE YE YG
Sbjct: 36 AKMGGGDPASNPRLRLAMDKAFDNNMPKD----NIQRAIDKGTGNLEGVEYIELRYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GG +++V+ LTD TR+VA VR GG + G V F F + + D+D
Sbjct: 92 IGGAALMVDCLTDNKTRTVADVRHAFNKNGGNLGTDGCVAFNFVHQGYL-LFAPGVDEDA 150
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L++ AL+AGAEDV+ N+D + E V++ +++ I + L EAG F++++G
Sbjct: 151 LMEAALEAGAEDVV---TNDDGSLE--------VITAPNDWAGIKSALEEAG--FKSEDG 197
Query: 195 S-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
+ E+ E E ++LI L +LDDV VYT +
Sbjct: 198 DVTMRAQNETELSGEDAEKMQKLIDALEDLDDVQDVYTSAV 238
>gi|374337613|ref|YP_005094318.1| hypothetical protein SMA_0624 [Streptococcus macedonicus ACA-DC
198]
gi|372283718|emb|CCF01915.1| Hypothetical protein SMA_0624 [Streptococcus macedonicus ACA-DC
198]
Length = 241
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K GG +P+ N L VL+KA+ ++PKD + R IK+A++ G + E YE YG GGV
Sbjct: 36 AKAGGGDPSMNASLRMVLDKARAANMPKDNINRAIKKATDVGDTTNYDEITYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
+I+V LTD R+ A + + GG M GSV MF + V++ D D+D +L
Sbjct: 96 AILVHTLTDNKKRTDANMHTIFTRNGGNMGSTGSVAYMFDHKGYIVIDRDNLDLDEDAML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ LDAGAED+ T +D +++ + + + L+ + F S
Sbjct: 156 EVLLDAGAEDL--------KTSDDA----FEIFTEPKEFPAVKEALKAQNLEFAQAQLS- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P + +DDE +++ + L+ KL + DDV VYT+
Sbjct: 203 MIPQNYVSLDDEQVDILETLVDKLEDDDDVQDVYTN 238
>gi|367477305|ref|ZP_09476659.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
gi|365270388|emb|CCD89127.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
Length = 248
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVVAARAENMPKDNIERAIKKALGGEGENYAEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRVGIIEFDSSVASDDAVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
++AGA+DVI E ++V ++ D++ ++ L R+A + ++
Sbjct: 156 IEAGADDVIS------------GEGGHEVYASPDSFHEVAKNLEAKFGEPRKAALTWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 202 ------PQNTVAVDDETGEKLVKLMDLLNEHDDVQNVYAN 235
>gi|120602034|ref|YP_966434.1| hypothetical protein Dvul_0986 [Desulfovibrio vulgaris DP4]
gi|166227547|sp|A1VC41.1|Y986_DESVV RecName: Full=Probable transcriptional regulatory protein Dvul_0986
gi|120562263|gb|ABM28007.1| protein of unknown function DUF28 [Desulfovibrio vulgaris DP4]
Length = 247
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 116/212 (54%), Gaps = 14/212 (6%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSI 80
K G +P N+ L A + AK +++PKD +E IK+ + E +E YE YG GGV++
Sbjct: 37 KAGGDPVGNSRLRAAIAAAKAINLPKDKIENAIKKGTGELAGGDILEMAYEGYGPGGVAL 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+VEV TD R+VA VR ++ GG M + G V + F R V+ ++ ++QL+++AL
Sbjct: 97 IVEVATDNKNRTVAEVRHILSKHGGSMGESGCVAWMFDRKGVITLEKDKYTEEQLMEVAL 156
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AGAEDV TDE + ++VV+ + ++ + L AG+ ++ + ++P
Sbjct: 157 EAGAEDV---------TDEGES---WEVVTAAADFNAVREALEAAGVEMQSAEFT-MVPQ 203
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
IEVD E L+ L + DDV V+ +
Sbjct: 204 NEIEVDVETGRKLMRLVDALEDNDDVQNVHAN 235
>gi|408371185|ref|ZP_11168955.1| hypothetical protein I215_09806 [Galbibacter sp. ck-I2-15]
gi|407743428|gb|EKF55005.1| hypothetical protein I215_09806 [Galbibacter sp. ck-I2-15]
Length = 239
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P +N L AV++ AK ++PKD +ER IKRAS
Sbjct: 13 MKRWSAMAKTFTRLGKDIVMAVKEGGPDPDANARLRAVIQNAKTANMPKDNIERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K E + E ++E Y G++I++E TD R+VA +R C G + GSV F F
Sbjct: 73 DKNTEDYKEVLFEGYAPHGIAILIETATDNNNRTVANIRSYFNKCNGSLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V + DED Y + +++ I
Sbjct: 133 HTCNFRIPAEGIDPEELELEFIDFGAEEVFK--------DEDGIHIY----APFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L E + +G E +P T +++ + + ++L+ K+ E DDV VY
Sbjct: 181 QKELEERRVEI-LSSGFERIPQVTKKLEADHVADVEKLLEKIEEDDDVQNVY 231
>gi|298346874|ref|YP_003719561.1| hypothetical protein HMPREF0573_11748 [Mobiluncus curtisii ATCC
43063]
gi|304389421|ref|ZP_07371384.1| YebC like protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315655419|ref|ZP_07908319.1| YebC like protein [Mobiluncus curtisii ATCC 51333]
gi|315656668|ref|ZP_07909555.1| YebC like protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|298236935|gb|ADI68067.1| protein of hypothetical function DUF28 [Mobiluncus curtisii ATCC
43063]
gi|304327231|gb|EFL94466.1| YebC like protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315490359|gb|EFU79984.1| YebC like protein [Mobiluncus curtisii ATCC 51333]
gi|315492623|gb|EFU82227.1| YebC like protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 252
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S E G + YE YG GV
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKSSVPADNIDRAVKRGSGAESGGADWQSITYEGYGPSGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+VE LTD R+V+ VR + GG +AD GSV ++F R V+ + D D+D++L+
Sbjct: 97 GFIVECLTDNKNRAVSEVRTIFSRNGGNIADSGSVSYQFARRGVIEVAKVDGLDEDKILE 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
L AGA+DV ED E + +D + T L++AGI +++ S+
Sbjct: 157 AVLAAGADDV-----------EDAGEIFVIETEPTD-LVAVRTALQDAGIDYDSAE-SQF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P + +D +A L L + DDV VY +
Sbjct: 204 VPSVKVGLDLDAYRKVMRLFDALEDSDDVQNVYMN 238
>gi|365879757|ref|ZP_09419162.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
gi|365292255|emb|CCD91693.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
Length = 248
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVVAARAENMPKDNIERAIKKALGGEGENYAEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ + A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRVGIIEFDRSVASDDAVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
++AGA+DVI E ++V ++ D++ ++ L R+A + ++
Sbjct: 156 IEAGADDVIS------------GEGGHEVYASPDSFHEVAKNLEAKFGEPRKAALTWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 202 ------PQNTVAVDDETGEKLVKLMDLLNEHDDVQNVYAN 235
>gi|320103075|ref|YP_004178666.1| hypothetical protein Isop_1532 [Isosphaera pallida ATCC 43644]
gi|319750357|gb|ADV62117.1| protein of unknown function DUF28 [Isosphaera pallida ATCC 43644]
Length = 247
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 24/218 (11%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K G PNP SN L +EKA++ PK+ +ER+IK+A+ E G + + E +YE YG GGV+
Sbjct: 37 KNGDPNPESNLRLRYAIEKARQFSCPKENIERSIKKATGELGADNYEEVLYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++ EVLTD R+ +R+ GG + G V + F + V+ + T +D+L++I
Sbjct: 97 VLCEVLTDNRNRTAGELRKAFDVAGGNLGSTGCVSYLFAKKGVILVNQTAIAEDELMEIV 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL-- 197
L+AGAED + P +Y++ + I L + I E+ +EL
Sbjct: 157 LEAGAED-MHPDSG-----------FYEITCDPKSLDAIKQALVDRHIEIES---AELTY 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELD---DVDAVYTD 232
+P TT+++D +EL K+++ LD DV VY++
Sbjct: 202 IPSTTVDLD---VELGKKMLKLREALDDNEDVQNVYSN 236
>gi|414168791|ref|ZP_11424754.1| UPF0082 protein [Afipia clevelandensis ATCC 49720]
gi|410887527|gb|EKS35337.1| UPF0082 protein [Afipia clevelandensis ATCC 49720]
Length = 248
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRLAITAARAENMPKDNIERAIKKAIGSDGENYDEMRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R V+ A D +L+ A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRVGVIEYDAKVASDDAMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
+DAGA+DV +E ++V+++ + Y ++ L R+A + ++
Sbjct: 156 IDAGADDVAS------------SEDGHEVLASPETYREVAKALEGKFGEARKAALIWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TI VDDE E +L+ L E DDV VY +
Sbjct: 202 ------PQNTITVDDETGEKLFKLLDLLNEHDDVQNVYAN 235
>gi|338972061|ref|ZP_08627440.1| hypothetical protein CSIRO_0500 [Bradyrhizobiaceae bacterium SG-6C]
gi|338234955|gb|EGP10066.1| hypothetical protein CSIRO_0500 [Bradyrhizobiaceae bacterium SG-6C]
Length = 248
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRLAITAARAENMPKDNIERAIKKAIGSDGENYDEMRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R V+ A D +L+ A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRVGVIEYDAKVASDDTMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
+DAGA+DV +E ++V+++ + Y ++ L R+A + ++
Sbjct: 156 IDAGADDVAS------------SEDGHEVLASPETYREVAKALEGKFGEARKAALIWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TI VDDE E +L+ L E DDV VY +
Sbjct: 202 ------PQNTITVDDETGEKLFKLLDLLNEHDDVQNVYAN 235
>gi|288904874|ref|YP_003430096.1| hypothetical protein GALLO_0663 [Streptococcus gallolyticus UCN34]
gi|325977815|ref|YP_004287531.1| hypothetical protein SGGBAA2069_c06150 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386337324|ref|YP_006033493.1| hypothetical protein SGGB_0645 [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288731600|emb|CBI13155.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|325177743|emb|CBZ47787.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334279960|dbj|BAK27534.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 241
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 114/216 (52%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K GG +P+ N L VL+KA+ ++PKD + R IK+A++ G + E YE YG GGV
Sbjct: 36 AKAGGGDPSMNASLRMVLDKARAANMPKDNINRAIKKATDVGDTTNYDEITYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V LTD R+ A + + GG M GSV + F R V++ D D+D +L
Sbjct: 96 AILVHTLTDNKKRTDANMHTIFTRNGGNMGSTGSVAYMFDRKGYIVIDRDNLDLDEDAML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ LDAGAED+ T +D +++ + + + L+ + F S
Sbjct: 156 EVILDAGAEDL--------KTSDDA----FEIFTEPKEFPAVKEALQAQNLEFAQAQLS- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P + +DDE ++ + L+ KL + DDV VYT+
Sbjct: 203 MIPQNYVSLDDEQADILETLVDKLEDDDDVQDVYTN 238
>gi|312113458|ref|YP_004011054.1| hypothetical protein Rvan_0679 [Rhodomicrobium vannielii ATCC
17100]
gi|311218587|gb|ADP69955.1| protein of unknown function DUF28 [Rhodomicrobium vannielii ATCC
17100]
Length = 248
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L + A+ ++PKD +ER IK++ E G +IE YE + GGV
Sbjct: 36 AKIGLPDPAMNPRLRTAILAARAQNMPKDNIERAIKKSQEAGGADYIEVRYEGFAPGGVG 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE LTD R+ VR + GG + + G+V F F R + + +++L+ A
Sbjct: 96 IIVEALTDNRNRTAGEVRSLFTKYGGNLGETGAVSFSFDRVGEIEYPLSAGSAEEMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGA+D E AE ++ + +T D ++++ +L + P ++ P
Sbjct: 156 IEAGADDC-----------ESDAEAHW-LTTTIDAFSEVQAELEKKFGPAKS-AAIGWRP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+EVD+E E +LI L + DDV VY +
Sbjct: 203 QNTVEVDEEKGEKLLKLIDSLEDSDDVQKVYAN 235
>gi|260887323|ref|ZP_05898586.1| glucose-1-phosphate adenylyltransferase [Selenomonas sputigena ATCC
35185]
gi|330838924|ref|YP_004413504.1| hypothetical protein Selsp_1085 [Selenomonas sputigena ATCC 35185]
gi|402833827|ref|ZP_10882437.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
CM52]
gi|260862959|gb|EEX77459.1| glucose-1-phosphate adenylyltransferase [Selenomonas sputigena ATCC
35185]
gi|329746688|gb|AEC00045.1| protein of unknown function DUF28 [Selenomonas sputigena ATCC
35185]
gi|402279673|gb|EJU28455.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
CM52]
Length = 243
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 25/220 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI+RA +KG A + E YE YG
Sbjct: 36 VRMGGGDPTGNMRLKLALSKAKANNIPKD----NIQRAIQKGLGAAEGSNYEELTYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKD 133
G +I++++LTD RS A VR + GG + + G V + F++ V + K T D+D
Sbjct: 92 PAGSAIMLDILTDNRNRSAADVRHIFSKYGGNLGETGCVGWMFKQKAVFIVEKETFEDED 151
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
+L+ I LDAGAED EDD +++ + +Y I L E GI ET +
Sbjct: 152 ELMGIVLDAGAEDFKA----EDDV--------FEITADPADYDAIEAALGEKGI--ETAS 197
Query: 194 GS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT++++ + E + LI L E DDV VY++
Sbjct: 198 AEITMVPDTTVKLEGKDAEKMQNLIDALEENDDVQNVYSN 237
>gi|194018039|ref|ZP_03056645.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|194010284|gb|EDW19860.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
Length = 239
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G PNP SN L VLE+AK VPK IV+R I++A +E F E Y
Sbjct: 26 FGREIYVA-AKQGEPNPESNQALRFVLERAKTYSVPKHIVDRAIEKAKGGAEENFDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G ++V+ LT+ + R+ + VR GG M GSV + F + V+ ++
Sbjct: 85 EGFGPNGSMVIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDQTAVIGVEGKSE 144
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
++ L + D D++E ED+T V + D + + ++AG+
Sbjct: 145 EETLELLMEADVDVRDIME----EDET--------VIVYAEPDQFHQVQEAFKQAGVEEF 192
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +LP + +DDE+ ++LI L EL+DV VY +
Sbjct: 193 TVAEITMLPQNEVTLDDESKAQFEKLIDVLEELEDVQQVYHN 234
>gi|365853706|ref|ZP_09393971.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
parafarraginis F0439]
gi|363711864|gb|EHL95570.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
parafarraginis F0439]
Length = 245
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P +N L V+EKA+ ++PKD V+R I +AS G F E YE YG GG +
Sbjct: 36 AKAGDPDPENNPQLRLVMEKARAANMPKDNVQRAIDKASGLGGAKFEEITYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK--DQLLD 137
I+V LTD R+ A VR GG + GSV + F R + I DK D +L
Sbjct: 96 IMVSALTDNKNRTAAEVRSAFTHHGGSLGASGSVSYMFDRKGYIVILRDGLDKTEDDMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ TD++ +++ + + D+ L++AG +T +
Sbjct: 156 DALDAGADDMKT-------TDDE-----FQIYTDPSSLGDVRDALQKAGYDLDTAE-VRM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P TT EV + + LI +L DDV VY
Sbjct: 203 FPETTTEVPADKTQQYTGLIDELENNDDVQDVY 235
>gi|381195912|ref|ZP_09903254.1| hypothetical protein AlwoW_01470 [Acinetobacter lwoffii WJ10621]
Length = 249
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 128/238 (53%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG ++R + K GG + SN L AV+EKA +++ +D++ R I+R A
Sbjct: 16 KQDASRGKLFTKFIRELTTAAKLGGGDAASNPRLRAVVEKALSVNMTRDVINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV F F
Sbjct: 76 GEDNDDLKEITYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTDGNLGTNGSVAFLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++D+AL+AGAED IE NE V++T +++ D
Sbjct: 136 KRG--EITFEDVSLEDKIMDVALEAGAED-IEVDENE-----------ILVITTPESFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKAEITDIDQAKKIMK-MIDMLEDLDDVQNVYTN 236
>gi|335049247|ref|ZP_08542248.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera sp.
UPII 199-6]
gi|333763613|gb|EGL41053.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera sp.
UPII 199-6]
Length = 235
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 22/218 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +P N L L+KAKE ++PK+ NIKRA +KG A + E VYE YG
Sbjct: 30 VRMGGADPVGNMRLKLALQKAKENNIPKE----NIKRAIQKGAGATEGQNYEEIVYEGYG 85
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ V VLTD R+ A VR V G M + G V + F + + D+D
Sbjct: 86 PAGVAVTVNVLTDNRNRTAADVRHVFSKYGSSMGETGCVGWMFHSKGIFIVDKAVTDEDT 145
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
++++ALDAGA+DV + +++++ +N+ + L E I E
Sbjct: 146 VMELALDAGADDV------------KTGDEEFEIITAPENFDSVEKALAEHNIATEHAQI 193
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P I+++ E E + LI L +LDDV VY +
Sbjct: 194 T-MVPDNLIKLNAEDAEKMETLIDALEDLDDVQDVYHN 230
>gi|222149669|ref|YP_002550626.1| hypothetical protein Avi_3631 [Agrobacterium vitis S4]
gi|254765087|sp|B9JRY6.1|Y3631_AGRVS RecName: Full=Probable transcriptional regulatory protein Avi_3631
gi|221736651|gb|ACM37614.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 248
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+PT N L ++ AK +PKD +ER +K+AS E + E YE YG GGV+
Sbjct: 36 AKAGLPDPTMNARLRLAIQNAKAQSMPKDNIERAVKKASGVDGENYEEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F + + K + D D +++ A
Sbjct: 96 VIVEALTDNRNRTASNVRSTFSKAGGALGETGSVSFSFDKVGEITYKASVGDADAVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV +DED + ++ ++ +++ L EA + + P
Sbjct: 156 IEAGAEDVT--------SDEDG----HTIICGFEDMNEVSKAL-EATLGEAESVKAIWKP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ VD++ + +LI L + DDV VY++
Sbjct: 203 QNTVPVDEDKAQSLMKLIETLEDDDDVQNVYSN 235
>gi|153816435|ref|ZP_01969103.1| hypothetical protein RUMTOR_02688 [Ruminococcus torques ATCC 27756]
gi|317500188|ref|ZP_07958420.1| hypothetical protein HMPREF1026_00362 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087584|ref|ZP_08336514.1| hypothetical protein HMPREF1025_00097 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438006|ref|ZP_08617649.1| hypothetical protein HMPREF0990_00043 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145846223|gb|EDK23141.1| DNA-binding regulatory protein, YebC/PmpR family [Ruminococcus
torques ATCC 27756]
gi|316898403|gb|EFV20442.1| hypothetical protein HMPREF1026_00362 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330400455|gb|EGG80088.1| hypothetical protein HMPREF1025_00097 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336018381|gb|EGN48129.1| hypothetical protein HMPREF0990_00043 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 243
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 21/216 (9%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIV 81
GGP+P +N+ L V+ KAK ++P D +ERNIK+A+ +G E + YE YG G +I+
Sbjct: 40 GGPDPANNSRLRDVIAKAKSNNMPNDTIERNIKKAAGEGAGDNYEHITYEGYGPNGTAII 99
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLLDIA 139
V+ LTD R+ + VR G + PG V F F + + D D D+L+ +A
Sbjct: 100 VKTLTDNKNRTASNVRNAFTKGSGNVGTPGCVSFMFDEKGQIFVAKEDCSMDADELMMLA 159
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE--L 197
LDAGAED E E +++++ ++++ KL EAGI G+E +
Sbjct: 160 LDAGAEDFAEE------------EESFEILTDPAAFSEVRLKLEEAGIVMA---GAEVTM 204
Query: 198 LPITTIEVDDEAMELNKELIAKLLEL-DDVDAVYTD 232
+P T +++ E N + LLE DDV VY +
Sbjct: 205 IPQTYVDLTSEEDIKNIQKTLDLLEEDDDVQDVYHN 240
>gi|89055871|ref|YP_511322.1| hypothetical protein Jann_3380 [Jannaschia sp. CCS1]
gi|119391968|sp|Q28LW5.1|Y3380_JANSC RecName: Full=Probable transcriptional regulatory protein Jann_3380
gi|88865420|gb|ABD56297.1| protein of unknown function DUF28 [Jannaschia sp. CCS1]
Length = 255
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 102/210 (48%), Gaps = 6/210 (2%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L +++AK + VPKD++ER I +A+ E + E YE YG GV+
Sbjct: 36 AKMGDPDPDKNPRLRLAVKEAKSVSVPKDVIERAIAKATGGDSENYDEIRYEGYGPNGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE +TD R+ + VR GG + + GSV F F R V + D D ++ A
Sbjct: 96 VIVETMTDNKNRTASTVRSTFTKNGGNLGETGSVGFMFDRKGQVTYPLSAGDADTIMMAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV NE D DED T N D++ L EA + P
Sbjct: 156 IEAGAEDV---ETNEGDGDEDLGGHVIWCADTDLN--DVSNAL-EADLGESESTKLVWRP 209
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAV 229
TT E+ E + LI L E DDV V
Sbjct: 210 TTTTELGLEDAQKLMRLIDALEEDDDVQTV 239
>gi|421848995|ref|ZP_16281980.1| nucleotidyltransferase [Acetobacter pasteurianus NBRC 101655]
gi|371460264|dbj|GAB27183.1| nucleotidyltransferase [Acetobacter pasteurianus NBRC 101655]
Length = 249
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ G P+P +N L A + A+E+++PKD +ER IK+AS G + ++E YE YG GV
Sbjct: 36 TRSGLPDPAANPRLRAAISAAREVNMPKDTIERAIKKASGAAGGDDYVEVRYEGYGPAGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR GG M + SV F FRR V+ + A +D++L+
Sbjct: 96 AVIVEGLTDNRNRTASDVRAAFSKHGGSMGETNSVSFMFRRLGVITYPASVASEDEMLEA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKV 168
A++AGAE+V+ + + T E E ++ V
Sbjct: 156 AIEAGAENVVSTETSHEVTCE--VESFFTV 183
>gi|339629763|ref|YP_004721406.1| hypothetical protein TPY_3511 [Sulfobacillus acidophilus TPY]
gi|339287552|gb|AEJ41663.1| hypothetical protein TPY_3511 [Sulfobacillus acidophilus TPY]
Length = 231
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 22/224 (9%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI---EKVY 70
K + K+GG NP +N L +EKAK ++P +ER I+RA+ GQEA + E VY
Sbjct: 14 KEIMAAAKRGGGNPDTNFKLRIAIEKAKANNLPAANIERAIRRAT--GQEAGVHYEEAVY 71
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E YG GG +I +++LTD R+ +R + GG + + G V + F + I TD
Sbjct: 72 EGYGPGGTAIYMDILTDNRNRTAGEIRHIFSRHGGSLGETGCVAWMFEPKGRLVITQTDL 131
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
+++LLDIA++AGA+D+ EDD Y V++ D + + GIP +
Sbjct: 132 TEEELLDIAIEAGADDL----AREDDE--------YVVLTAPDVLDLVRQAFEDRGIPVD 179
Query: 191 TDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EL LP TT+ V+ E EL+ L + DDV VY++
Sbjct: 180 E---AELVRLPKTTVAVEGREAEQLMELLELLEDHDDVQRVYSN 220
>gi|303249143|ref|ZP_07335383.1| protein of unknown function DUF28 [Desulfovibrio fructosovorans JJ]
gi|302489468|gb|EFL49415.1| protein of unknown function DUF28 [Desulfovibrio fructosovorans JJ]
Length = 245
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 14/220 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K + + GG + NT L + + AK +++PKD +E+ IK+ + E E F E +YE
Sbjct: 30 KELMLAARAGGADTALNTRLKSAIAAAKAVNLPKDKIEQAIKKGTGELAGENFDEVLYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GGV+I+VE TD R+VA VR ++ GG M + G V + F + V + +
Sbjct: 90 YGPGGVAILVEAATDNRNRTVAEVRHLLSKGGGSMGEAGCVGWMFAKKGVFSFPKESFTE 149
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
+QL+++AL+ GAED+ +E D ++V +++ ++ AG+ + D
Sbjct: 150 EQLMEVALEHGAEDI----ADEGDV--------WEVHCAPEDFDALSGAFEAAGMTID-D 196
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+LP T+ +D E + +LI L + DDV V+T+
Sbjct: 197 AEVSMLPSNTVSLDAENGQKLIKLIDMLEDNDDVQKVHTN 236
>gi|258543671|ref|YP_003189104.1| hypothetical protein APA01_26280 [Acetobacter pasteurianus IFO
3283-01]
gi|384043589|ref|YP_005482333.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-12]
gi|384052106|ref|YP_005479169.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-03]
gi|384055215|ref|YP_005488309.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-07]
gi|384058448|ref|YP_005491115.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-22]
gi|384061089|ref|YP_005500217.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-26]
gi|384064381|ref|YP_005485023.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-32]
gi|384120394|ref|YP_005503018.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421852937|ref|ZP_16285619.1| nucleotidyltransferase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|256634749|dbj|BAI00725.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-01]
gi|256637805|dbj|BAI03774.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-03]
gi|256640859|dbj|BAI06821.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-07]
gi|256643914|dbj|BAI09869.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-22]
gi|256646969|dbj|BAI12917.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-26]
gi|256650022|dbj|BAI15963.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-32]
gi|256653012|dbj|BAI18946.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256656066|dbj|BAI21993.1| nucleotidyltransferase [Acetobacter pasteurianus IFO 3283-12]
gi|371478788|dbj|GAB30822.1| nucleotidyltransferase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 249
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ G P+P +N L A + A+E+++PKD +ER IK+AS G + ++E YE YG GV
Sbjct: 36 TRSGLPDPAANPRLRAAISAAREVNMPKDTIERAIKKASGAAGGDDYVEVRYEGYGPAGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR GG M + SV F FRR V+ + A +D++L+
Sbjct: 96 AVIVEGLTDNRNRTASDVRAAFSKHGGSMGETNSVSFMFRRLGVITYPASVASEDEMLEA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKV 168
A++AGAE+V+ + + T E E ++ V
Sbjct: 156 AIEAGAENVVSTETSHEVTCE--VESFFAV 183
>gi|224003587|ref|XP_002291465.1| hypothetical protein THAPSDRAFT_34698 [Thalassiosira pseudonana
CCMP1335]
gi|220973241|gb|EED91572.1| hypothetical protein THAPSDRAFT_34698 [Thalassiosira pseudonana
CCMP1335]
Length = 241
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 22/233 (9%)
Query: 4 KQSCIRGWGRKSYLRNVKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ 62
K++ + + K + VK+GG +P +N L +++ AK+ VP D + R IKRA+EK
Sbjct: 18 KKAKVNAYYGKKIIMAVKQGGSADPIANRQLGELIKAAKQNSVPVDNINRAIKRATEKDA 77
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
F E +E YG+GG S+++ VL+D RS A V+ V GKMA+ GSV+F +
Sbjct: 78 GDFSEATFEAYGFGGASLIINVLSDNSNRSTADVKTAVNKLKGKMAEQGSVLFMYDLKGK 137
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI--TT 180
+ I D+++LL A+DAG ED+ + E D + TS YTD T+
Sbjct: 138 IEIPAV-VDEEELLMAAIDAGVEDM---ELVEGDEE-----------GTSIVYTDPKETS 182
Query: 181 KLREAGIPFETDNGSEL----LPITTIEVDDEAMELNKELIAKLLELDDVDAV 229
+ +A + GS++ + +E +E + N +I L ELDDVD+V
Sbjct: 183 AMFDAVKAIGLEEGSKMGLAHISKAPVECTEEDFDKNMAIIEALEELDDVDSV 235
>gi|425746691|ref|ZP_18864715.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-323]
gi|425485330|gb|EKU51724.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-323]
Length = 249
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 129/238 (54%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + + GGP+ SN L AV+EKA +++ +D + R I+R A
Sbjct: 16 KQDASRGKVFTKYIREIVTAARLGGPDAASNPRLRAVVEKALSVNMTRDTINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTNGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++++AL+AGA+D+ + DED V+++ +++ D
Sbjct: 136 KRG--EISFDDVSLEDKVMEVALEAGADDI--------EIDEDS----ILVITSPESFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKAEITDIDQAKQIMK-MIDMLEDLDDVQNVYTN 236
>gi|384110140|ref|ZP_10010968.1| DNA-binding regulatory protein, YebC/PmpR family [Treponema sp.
JC4]
gi|383868306|gb|EID83977.1| DNA-binding regulatory protein, YebC/PmpR family [Treponema sp.
JC4]
Length = 247
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 16/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ GG +P SN L ++ KA+ ++PKD +ER IK+ + E G ++ E VYE Y GGV
Sbjct: 36 ARMGGGDPNSNPRLRTIIIKARAANMPKDNIERAIKKGTGEDGATSYEELVYEGYAPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VEVLTD R+ A +R + GG + GSV F+R + +D+++++
Sbjct: 96 AVMVEVLTDNKNRAAADIRNIFTKNGGNLGTTGSVSRMFQRKGTIEYDAEKVSEDEVMEV 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSEL 197
AL+AGA+D+ VNED V ++ D + + L E G D G L
Sbjct: 156 ALEAGADDI----VNEDGV--------ITVTTSPDAFAAVADALNEKGFESLSADVG--L 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+P VD + +++I KL + DDV VY
Sbjct: 202 VPDAYQPVDKDTAAKVQKMIDKLEDNDDVQNVY 234
>gi|372266979|ref|ZP_09503027.1| hypothetical protein AlS89_03732 [Alteromonas sp. S89]
Length = 247
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 111/213 (52%), Gaps = 16/213 (7%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSI 80
K G NP N L A ++KA ++ +D +++ I R + E V YE YG GGV++
Sbjct: 37 KSGGNPDDNPALRATIDKALGANMKRDTIDKAIARGAGNADGENYEAVTYEGYGVGGVAV 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+VE LTD R+VA VR GG + GSV + F R + + AD+D L++ AL
Sbjct: 97 LVECLTDNRNRTVAEVRHAFTKRGGNLGTDGSVAYLFARKGQMYYE-AGADEDALMEAAL 155
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELLP 199
+AGAED+ N+D + E V + +Y + L EAG F+ DN ++P
Sbjct: 156 EAGAEDI---ETNDDGSIE--------VTTEFTDYMSVKDALTEAG--FKPDNAEIAMIP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TT+ +D + E L+ L +LDDV VYT+
Sbjct: 203 STTVPMDKDGAEKVLALVDMLEDLDDVQNVYTN 235
>gi|359799026|ref|ZP_09301595.1| hypothetical protein KYC_18815 [Achromobacter arsenitoxydans SY8]
gi|359363164|gb|EHK64892.1| hypothetical protein KYC_18815 [Achromobacter arsenitoxydans SY8]
Length = 243
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 14/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
+ GGP+P SN L +KA + ++PKD ++R I+R A +A+ E YE YG GG
Sbjct: 36 ARAGGPDPDSNPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGDAYEEVRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD TR+VA VR GG + GSV F F+ + +DQ+++
Sbjct: 96 AVIVDCMTDNRTRTVAEVRHAFAKNGGNLGQEGSVAFMFKHCGQF-VFAPGTPEDQVMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV TDE E +VV +Y + +AG+ E D G +
Sbjct: 155 ALEAGAEDVT--------TDE---EGVIEVVCAPADYAAVRKAFDDAGLKAEVD-GIVMK 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ E+ E ++L+ L LDDV VYT
Sbjct: 203 ALNETELAGEDAIKMQKLLDALEGLDDVQEVYT 235
>gi|403053112|ref|ZP_10907596.1| hypothetical protein AberL1_16630 [Acinetobacter bereziniae LMG
1003]
gi|445424449|ref|ZP_21436930.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter sp.
WC-743]
gi|444754500|gb|ELW79114.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter sp.
WC-743]
Length = 249
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 24/237 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + + GGP+ SN L AV+EKA +++ +D + R I+R A
Sbjct: 16 KQDASRGKVFTKYIRELTTAARLGGPDVGSNPRLRAVVEKALSVNMTRDTINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTAGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++DIAL+AGAED+ + DED V++T + + D
Sbjct: 136 KRG--EITFEDVSLEDKIMDIALEAGAEDI--------EVDEDE----ILVITTPETFGD 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T + D + +L ++I +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKALISDVDQAKLIVKMIDMFEDLDDVQNVYTN 236
>gi|166031787|ref|ZP_02234616.1| hypothetical protein DORFOR_01488 [Dorea formicigenerans ATCC
27755]
gi|346306352|ref|ZP_08848510.1| hypothetical protein HMPREF9457_00219 [Dorea formicigenerans
4_6_53AFAA]
gi|166028240|gb|EDR46997.1| DNA-binding regulatory protein, YebC/PmpR family [Dorea
formicigenerans ATCC 27755]
gi|345900157|gb|EGX69985.1| hypothetical protein HMPREF9457_00219 [Dorea formicigenerans
4_6_53AFAA]
Length = 243
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 107/195 (54%), Gaps = 21/195 (10%)
Query: 20 VKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG +P +N+ L V+ KAK ++P D ++RNIK+A A E + YE YG G
Sbjct: 36 VKEGGSADPANNSRLRDVIAKAKANNMPNDTIDRNIKKAEGDANAANYEHITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQL 135
+I+VE LTD R+ V+ G + PG V F F + +V+ + D D D+L
Sbjct: 96 TAIIVEALTDNRNRTATNVKNAFTKGKGNVGTPGCVSFMFDKKGQIIVDKEEFDGDSDEL 155
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
+ ALDAGAED E E+D+ +++ +T ++++ + L EAGIP G+
Sbjct: 156 MMTALDAGAEDFSE----EEDS--------FEIFTTPEDFSAVRQALEEAGIPMA---GA 200
Query: 196 E--LLPITTIEVDDE 208
E ++P T +E+ DE
Sbjct: 201 EVTMIPQTYVELTDE 215
>gi|403511168|ref|YP_006642806.1| hypothetical protein B005_3741 [Nocardiopsis alba ATCC BAA-2165]
gi|402800589|gb|AFR07999.1| hypothetical protein B005_3741 [Nocardiopsis alba ATCC BAA-2165]
Length = 248
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR S E G + +YE Y GGV
Sbjct: 37 RTGGGDPDGNPTLYDAIQKAKKNSVPADNIERARKRGSGEEAGGAEWQTIMYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR V GG MAD GSV + F R VV + ++D +
Sbjct: 97 ALLVECLTDNRNRAASEVRVAVTRNGGNMADAGSVSYLFNRKGVVIVPKEGTNEDDVTMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAE+V ED D ++++ + + + T L+EAGI +++ + S L
Sbjct: 157 VLEAGAEEV------EDIGDS------FEIICEATDLVSVRTSLQEAGIDYDSAD-SNWL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + VD E + ++ L + DDV V+T+
Sbjct: 204 PSMEVPVDAETAKKVLRVVDALEDSDDVQNVFTN 237
>gi|355677207|ref|ZP_09060401.1| hypothetical protein HMPREF9469_03438 [Clostridium citroniae
WAL-17108]
gi|354813117|gb|EHE97729.1| hypothetical protein HMPREF9469_03438 [Clostridium citroniae
WAL-17108]
Length = 242
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D ++R IK+A+ E + YE YG GV
Sbjct: 36 VKEGGADPANNSKLRDVIAKAKANNMPNDTIDRGIKKAAGDAASVNYEILTYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + PGSV + F + +++ + + D D+L+
Sbjct: 96 AIIVDTLTDNKNRTAANVRSAFTKGGGNVGTPGSVSYMFDKKGQIIIDKEECEMDPDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
IALDAGAED E E+D+ Y+V++ D+++ + L IP +
Sbjct: 156 MIALDAGAEDFAE----EEDS--------YEVITAPDDFSAVREALEAQNIPM-MEASVT 202
Query: 197 LLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 203 MIPQTWVELTDE 214
>gi|423093857|ref|ZP_17081653.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens Q2-87]
gi|397887901|gb|EJL04384.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens Q2-87]
Length = 248
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALSANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGATEADNVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 175
F R I F D+D L + AL+A A+DVI DD ++V ++ ++
Sbjct: 134 FERKG--QISFAPGLDEDALTEAALEADADDVI----GHDDGS-------FEVFTSFASF 180
Query: 176 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG D + P T+ E+D E E +LI L +LDDV VY++
Sbjct: 181 YAVRNALEAAGFK-PADAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|383650357|ref|ZP_09960763.1| hypothetical protein SchaN1_33635 [Streptomyces chartreusis NRRL
12338]
Length = 250
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 116/214 (54%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RMGGADPEGNPTLYDAIQKAKKSSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASEVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLAA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L++AGI +++ + + +
Sbjct: 157 VLDAGAEEV-------NDLGE-----TFEVLSEATDLVAVRTALQDAGIDYDSAD-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E + +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGAKKIFKLIDALEDSDDVQNVFAN 237
>gi|449128583|ref|ZP_21764829.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP33]
gi|448940991|gb|EMB21895.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP33]
Length = 247
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 115/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
K GG +P +N L + KA+ ++PKD +ER IK+ + E G + E +YE YG GGV
Sbjct: 36 AKMGGGDPATNPRLRTAVLKARAANMPKDNIERAIKKGTGELGAVNYEELLYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VEVLTD R+ A+VR + GG + GSV + F R V+ ++ +++
Sbjct: 96 AVLVEVLTDNKNRTAASVRNIFTKSGGNLGATGSVAYMFNRKGVIEYDADAVSEEAIMEA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
AL+AGAED+ ED V + +++ + L+E G FE+ + S +
Sbjct: 156 ALEAGAEDI----ATEDGV--------ITVTTDPNDFASVLEALQEKG--FESVSASVSM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T + +D + + ++I KL E DDV V ++
Sbjct: 202 VPDTYVALDADTTQKALKMIDKLEEDDDVQTVSSN 236
>gi|424779954|ref|ZP_18206840.1| hypothetical protein C683_0189 [Catellicoccus marimammalium
M35/04/3]
gi|422843493|gb|EKU27930.1| hypothetical protein C683_0189 [Catellicoccus marimammalium
M35/04/3]
Length = 241
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 120/216 (55%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GGP+PT+N+ L V++KA+ ++PKD ++R IK+A+E G + ++E +E YG GV
Sbjct: 36 AKAGGPDPTANSSLRLVMDKARAENMPKDNIQRAIKKATESGAGDHYMELTFEGYGPKGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD--ADKDQLL 136
+I+V LTD R+ VR GG + + GSV ++F R + I+ D+D++L
Sbjct: 96 AILVHTLTDNKNRTQTNVRVAFTRNGGSVGESGSVAYQFDRKGYIAIEREGLALDEDEML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ LDAGAED++ ++ +++ + +++T + L + +
Sbjct: 156 EKVLDAGAEDLV------------TSDEVFEIYTAPEDFTSVRDALEKEFTLARAE--LT 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT+ ++ +E + L+ KL + +DV V+T+
Sbjct: 202 MIPQTTVPLEGADLEQLERLVDKLEDDEDVSEVFTN 237
>gi|160939247|ref|ZP_02086598.1| hypothetical protein CLOBOL_04141 [Clostridium bolteae ATCC
BAA-613]
gi|158438210|gb|EDP15970.1| hypothetical protein CLOBOL_04141 [Clostridium bolteae ATCC
BAA-613]
Length = 242
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 107/192 (55%), Gaps = 16/192 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D ++R IK+A+ E + YE YG GV
Sbjct: 36 VKEGGADPANNSKLRDVIAKAKANNMPNDTIDRGIKKAAGDANSVNYETLTYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + PGSV + F + +++ + D D D+L+
Sbjct: 96 AIIVDTLTDNKNRTAANVRSAFTKGGGNVGTPGSVSYMFDKKGQIIIDKEECDMDPDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ALDAGAED E E+D+ Y+VV+ ++++ + L IP + +
Sbjct: 156 MLALDAGAEDFSE----EEDS--------YEVVTAPEDFSAVREALEAQSIPMMQADVT- 202
Query: 197 LLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 203 MIPQTWVELTDE 214
>gi|152967001|ref|YP_001362785.1| hypothetical protein Krad_3057 [Kineococcus radiotolerans SRS30216]
gi|189039811|sp|A6WCI2.1|Y3057_KINRD RecName: Full=Probable transcriptional regulatory protein Krad_3057
gi|151361518|gb|ABS04521.1| protein of unknown function DUF28 [Kineococcus radiotolerans
SRS30216]
Length = 253
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 24/242 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ + KS+ R +K GG + + N L ++KAK+ VP D ++R +
Sbjct: 11 KHKKAVVDAKRAKSFARLIKNIEVAARTGGGDVSGNPTLFDAIQKAKKTSVPADNIDRAV 70
Query: 55 KRAS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR S E G + +YE YG GV+++VE LTD R+ VR + GG +ADPGS
Sbjct: 71 KRGSGAEAGGADWQTIMYEGYGPNGVALLVECLTDNKNRAAMEVRTAMTRNGGSLADPGS 130
Query: 113 VMFKFRRARVVNI--KFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 170
V + F R VV I + TD +D +L LDAGAE+V ++ DT ++V+S
Sbjct: 131 VAYMFSRKGVVVIGKEGTDLTEDDVLGAVLDAGAEEV----SDQGDT--------FEVIS 178
Query: 171 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+ + + L+ AGI +++ S +P + +D E LI L + DDV V+
Sbjct: 179 EATDLAAVRDALKAAGIEYDSAEAS-FVPSVEVPLDAEGATKVFRLIDALDDCDDVQNVF 237
Query: 231 TD 232
+
Sbjct: 238 AN 239
>gi|401680364|ref|ZP_10812284.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
ACP1]
gi|400218689|gb|EJO49564.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
ACP1]
Length = 245
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 23/201 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-----QEAFIEKVYEVYG 74
+ GG +PT N L L+KA+E ++PKD NI+RA +KG A+ E VYE YG
Sbjct: 36 ARMGGADPTGNMRLKLALQKARENNIPKD----NIQRAIDKGVGATDMNAYEEIVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ VEV+TD R+ A VR GG + + G V + F+ V I D+D+
Sbjct: 92 PAGVAVTVEVMTDNRNRAAADVRHAFSKQGGNLGESGCVGWMFKSKGVFVIDKEGHDEDE 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L +ALDAGAED+ EDD +++ +T +++ + L +AGI E
Sbjct: 152 LTLLALDAGAEDLKA----EDDV--------FEIYTTPEDFDAVEQALADAGIETEVAKI 199
Query: 195 SELLPITTIEVD-DEAMELNK 214
+ ++P TTIE+ D+A+++ K
Sbjct: 200 T-MIPDTTIELSGDDAVKMQK 219
>gi|373108191|ref|ZP_09522474.1| UPF0082 protein [Myroides odoratimimus CCUG 10230]
gi|423130092|ref|ZP_17117767.1| UPF0082 protein [Myroides odoratimimus CCUG 12901]
gi|423133773|ref|ZP_17121420.1| UPF0082 protein [Myroides odoratimimus CIP 101113]
gi|423329402|ref|ZP_17307209.1| UPF0082 protein [Myroides odoratimimus CCUG 3837]
gi|371647288|gb|EHO12797.1| UPF0082 protein [Myroides odoratimimus CCUG 12901]
gi|371647412|gb|EHO12920.1| UPF0082 protein [Myroides odoratimimus CCUG 10230]
gi|371648165|gb|EHO13657.1| UPF0082 protein [Myroides odoratimimus CIP 101113]
gi|404603802|gb|EKB03456.1| UPF0082 protein [Myroides odoratimimus CCUG 3837]
Length = 236
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 12/212 (5%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGPNP +N L AV++ AK ++PKD VER IKRA++K E + E ++E YG G++
Sbjct: 34 VKEGGPNPEANARLRAVIQNAKAANMPKDNVERAIKRATDKDTENYKEVIFEGYGPHGIA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++E TD R+VA +R C G + GSV F F N + + L +
Sbjct: 94 FLIECATDNNNRTVANIRSYFNKCNGTLGTQGSVEFMF--DHTCNFRIPAEEGRDLEEFE 151
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L ++I+ ++E DED Y + +++ I +L GI +G + +P
Sbjct: 152 L-----ELIDFGIDEIFEDEDGVMIY----APFESFGSIQKELEGRGIEI-LSSGFDRIP 201
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
T E+ +E + ++L+ K+ E DDV V+T
Sbjct: 202 QVTKELSEEEIADVEKLLEKIEEDDDVQNVFT 233
>gi|308181048|ref|YP_003925176.1| hypothetical protein LPST_C1866 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|308046539|gb|ADN99082.1| hypothetical protein LPST_C1866 [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 242
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 18/221 (8%)
Query: 13 RKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEV 72
R+ Y+ VK GGP+P SN L V++KAK ++PKD ++R + + S G E + E YE
Sbjct: 30 RELYMA-VKAGGPDPDSNAQLRLVMDKAKAANMPKDNIKRAVDKGSGSGAENYEEVTYEG 88
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GG++++V LTD R+ AAVR GG +A G+V + F R + I D D
Sbjct: 89 YGPGGIAVLVHALTDNKNRTAAAVRSAFTHHGGALAATGAVSYMFDRKGYIVISREDLDT 148
Query: 133 DQ---LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
D+ L+D+ LDAG +D+ ++ +++ + + L G
Sbjct: 149 DEDTMLIDV-LDAGGDDL------------QSSDEAFEIYTDPKQLAAVRDALEANGYKL 195
Query: 190 ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
ET + ++P +V + +E + +I +L + DDV VY
Sbjct: 196 ETAELT-MIPENLTDVPADKVEKLQHMIDELEDNDDVSEVY 235
>gi|421668853|ref|ZP_16108886.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC087]
gi|410378987|gb|EKP31596.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC087]
Length = 249
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-S 58
KQ RG Y+R + K GG +P SN L AV+EKA +++ +D + R I+R
Sbjct: 16 KQDASRGKVFTKYIREIVTAAKLGGADPASNPRLRAVVEKALSVNMTRDTINRAIQRGVG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTAGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++D+A++AGAED+ V+ED+ V+++ + + +
Sbjct: 136 KRG--EITFDDVSLEDKIMDVAIEAGAEDI---EVSEDE---------ILVITSPETFGE 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K LI L +LDDV VYT+
Sbjct: 182 VQDALAAAGL--KSDNAEVVMSPSTKAEITDIDQAKQVMK-LIDMLEDLDDVQNVYTN 236
>gi|319404759|emb|CBI78360.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
gi|319407722|emb|CBI81370.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 249
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 109/216 (50%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+PT N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKQGSPDPTMNPRLRLAVQNAKAQSMPKDNIERAIKKASGSDVENYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + KF D +++ A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKSGGALGETGSVSFMFNRIGEIIYKFESGTADTIMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI--TTKLREAGIPFETDNGSEL 197
++AGAEDV ++E+ + + DI +K+ E + E ++ +
Sbjct: 156 IEAGAEDV--------QSEEEGGHHIFCA------FEDIGEVSKILETTLG-EAESIKTI 200
Query: 198 LPITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 232
TT+ DE L+ LIA L E DDV VY +
Sbjct: 201 WKATTLAPIDEEKALSVLRLIATLEEDDDVQNVYAN 236
>gi|302875045|ref|YP_003843678.1| hypothetical protein Clocel_2171 [Clostridium cellulovorans 743B]
gi|307690336|ref|ZP_07632782.1| hypothetical protein Ccel74_19436 [Clostridium cellulovorans 743B]
gi|302577902|gb|ADL51914.1| protein of unknown function DUF28 [Clostridium cellulovorans 743B]
Length = 245
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 112/213 (52%), Gaps = 15/213 (7%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSI 80
KGG NP +N L V+ KAK ++P D + R +K+ A E + E VYE YG GV+
Sbjct: 37 KGGSNPDTNAKLRDVIAKAKAANMPADTISRAVKKGAGELEGVNYEEIVYEGYGPNGVAF 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLDIA 139
VV VLTD RS + VR GG + G V + F ++ +++ + D D+D+++ A
Sbjct: 97 VVNVLTDNKNRSASNVRVAFDRNGGNLGASGCVAWMFAKKGQIIIERTADMDEDEIMMTA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+AGAEDV D E +++++ ++++ + L AG F + + ++P
Sbjct: 157 LEAGAEDV------------DAQEEAFEIITAMEDFSTVREALEAAGFEFASAEIT-MIP 203
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EVD E + L+ +L + DDV VY +
Sbjct: 204 DNYVEVDLATAETVQRLVDRLEDDDDVQDVYHN 236
>gi|388258812|ref|ZP_10135987.1| hypothetical protein O59_003208 [Cellvibrio sp. BR]
gi|387937571|gb|EIK44127.1| hypothetical protein O59_003208 [Cellvibrio sp. BR]
Length = 238
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 114/215 (53%), Gaps = 20/215 (9%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSI 80
KGG NP N L A +EKA ++ KD+VER I R A +A+ E YE YG GV+
Sbjct: 28 KGGANPADNPRLRAAVEKAYLNNLKKDVVERAIARGAGTNESDAYEELTYEGYGVNGVAF 87
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDIA 139
+VE +TD R+ VR GG + GSV + F AR I F ++D L++ A
Sbjct: 88 IVECMTDNRNRTAGDVRHAFDKKGGNLGTSGSVAYLF--ARKGQISFEPGINEDALMEAA 145
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL-- 197
L+AGA+DV+ +N+D + + V++ +++ + L AG+ T +E+
Sbjct: 146 LEAGADDVV---INDDGSAD--------VMTAFEDFFRVKDALASAGL---TPASAEITQ 191
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T+ +D EA E LI L +LDDV VYT+
Sbjct: 192 IPSLTVNLDKEAAEKILALIDALEDLDDVQNVYTN 226
>gi|418473919|ref|ZP_13043460.1| hypothetical protein SMCF_6477 [Streptomyces coelicoflavus ZG0656]
gi|371545474|gb|EHN74093.1| hypothetical protein SMCF_6477 [Streptomyces coelicoflavus ZG0656]
Length = 250
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 37 RMGGVDIEGNPTLYDAIQKAKKQSVPNKNIDSAVKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +LD
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELGEDDVLDA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+EAGI +E+ + + +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVLSEATDLVAVRTALQEAGIDYESAD-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFRLIDALEDSDDVQNVFAN 237
>gi|313884405|ref|ZP_07818166.1| DNA-binding regulatory protein, YebC/PmpR family [Eremococcus
coleocola ACS-139-V-Col8]
gi|312620189|gb|EFR31617.1| DNA-binding regulatory protein, YebC/PmpR family [Eremococcus
coleocola ACS-139-V-Col8]
Length = 244
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 16/232 (6%)
Query: 4 KQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-Q 62
++ + G K K GG +P+ N+ L VL+KAK ++PKD + R IK+A++ G
Sbjct: 23 RKGAVFGKLSKEIFMAAKNGGGDPSMNSTLRMVLDKAKAENMPKDNITRAIKKATDAGDM 82
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR- 121
+ E YE YG GG++I+V LTD R+ + GG + GSV + F R
Sbjct: 83 TNYDEITYEGYGSGGIAILVHTLTDNKNRTDTGIHVAFSRNGGNLGTSGSVAYMFDRKGY 142
Query: 122 -VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITT 180
V++ + + D+D + ++A++AGAEDV ++ +++ + ++ +
Sbjct: 143 VVLDREELEVDEDTIFELAIEAGAEDV------------QVSDEAFEIYTDPSDFAAVKE 190
Query: 181 KLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L AG F + ++P TI +D E +E ++L+ L + DDV VYT+
Sbjct: 191 ALEAAGYEFARAELT-MVPQNTIAIDGEKLEKLEKLVDALEDDDDVQQVYTN 241
>gi|389865011|ref|YP_006367252.1| hypothetical protein MODMU_3360 [Modestobacter marinus]
gi|388487215|emb|CCH88773.1| conserved hypothetical protein; YebC-like [Modestobacter marinus]
Length = 250
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 17/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + + N L ++KAK+ VP D ++R +KR E G + YE YG GGV
Sbjct: 37 RTGGADLSGNPTLYDAVQKAKKSSVPNDNIDRAVKRGGGLEAGGVDYQSITYEGYGPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD RS VR + GG MADPGSV + F R VV + +D +L
Sbjct: 97 AVLIECLTDNKNRSAMEVRTAMSRNGGNMADPGSVSYLFSRKGVVVVPSAGTTEDDVLMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET-DNGSEL 197
LDAGAE+V + DT E VV + + T L++AGI +++ D G
Sbjct: 157 VLDAGAEEVRDLG----DTLE--------VVCEPGDMIAVRTALQDAGIDYDSADMG--F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P +E+D++ LI L +LDDV V+ +
Sbjct: 203 VPSVQVELDEDGAGKVFRLIDALEDLDDVQNVFAN 237
>gi|453077490|ref|ZP_21980236.1| hypothetical protein G419_19294 [Rhodococcus triatomae BKS 15-14]
gi|452759165|gb|EME17538.1| hypothetical protein G419_19294 [Rhodococcus triatomae BKS 15-14]
Length = 250
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 124/240 (51%), Gaps = 22/240 (9%)
Query: 2 QRKQSCI---RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I RG ++N+ + GG +P N L ++KAK+ VP D +ER
Sbjct: 11 KHKKAAIDAKRGKAFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKTSVPNDNIERAR 70
Query: 55 KRAS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E G + +YE YG GV++++E LTD R+ VR + GG MADPGS
Sbjct: 71 KRGAGEEAGGADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R VV + +D++L++ L+AGAE++ D D+ +++VS +
Sbjct: 131 VSYLFSRKGVVLLDKAGRSEDEILEVVLEAGAEEI------NDLGDQ------FEIVSEA 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + + L +AGI +++ + + + VD + +L+ L E DDV VYT+
Sbjct: 179 GDLIAVRSALVDAGIDYDSAD-PDFRASVEVPVDADGARKVFKLVDALEESDDVQNVYTN 237
>gi|371778148|ref|ZP_09484470.1| hypothetical protein AnHS1_12089 [Anaerophaga sp. HS1]
Length = 250
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 113/215 (52%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGP+P SN L ++ A+ +++PKD + R I +ASE G +++ E +E YG GG++
Sbjct: 36 VKEGGPDPESNPRLRLAIQNARSVNMPKDNINRAISKASEAGGDSYQEITFEGYGPGGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+ +E +TD R+V AVR + GG M GS+ F F R V I T+ + L++
Sbjct: 96 VFLECMTDNNNRTVGAVRSIFNKRGGSMGTNGSLSFLFERKGVFQIVKTNEMDLETLELE 155
Query: 140 L-DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
L DAGA+++ + E V + ++ + KL E G+ E N S +
Sbjct: 156 LIDAGAQEI------------EMEEELIIVTTEMADFGAVQKKLDELGVKVE--NASLQR 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T EVD E + +I + E DDV VY +
Sbjct: 202 IPNTYKEVDVETAKKFLRMIDEFEENDDVQNVYHN 236
>gi|337265810|ref|YP_004609865.1| hypothetical protein Mesop_1288 [Mesorhizobium opportunistum
WSM2075]
gi|336026120|gb|AEH85771.1| protein of unknown function DUF28 [Mesorhizobium opportunistum
WSM2075]
Length = 249
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P+ N L ++ AK + +PKD ++R I +AS E + YE YG GGV+
Sbjct: 36 AKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRAINKASMGDAENYEAVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD RS + VR GG M + GSV F + RA + + D+++D A
Sbjct: 96 VIVEALTDNRNRSASNVRAAFTKAGGAMGETGSVSFMWDRAGEIYYPASAGSADKVMDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGA+DV ++DE+ + + +N +++ L EA + P
Sbjct: 156 IEAGADDV--------ESDEEG----HTIYCAFENLGEVSKAL-EASLGEAESVKLIWKP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ VD+E + +L+A L + DDV +VY +
Sbjct: 203 QNTVPVDEERAQSLMKLVATLEDDDDVQSVYAN 235
>gi|406913038|gb|EKD52525.1| protein of unknown function DUF28 [uncultured bacterium]
Length = 249
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 118/213 (55%), Gaps = 17/213 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIV 81
GG +P +N L +EKAK +PKD +ER IK+ + E E++ E YE YG GV++V
Sbjct: 39 GGGDPNANPRLRLAIEKAKAQSLPKDNIERAIKKGTGELEGESYEEISYEGYGQAGVALV 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
V+ +TD R+VA +R GG++A+ G+V F R ++ + + +++L + ALD
Sbjct: 99 VDCMTDNKNRTVAEIRYCFSRKGGRLAETGAVSRIFERKGIIRVSTSVISEEELFEKALD 158
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAED+ +EDD + V ++ + + + L+ AGI + + E +P
Sbjct: 159 AGAEDI----GSEDDV--------FVVTTSFNGFNAVNDALKTAGITIK-EACFEKIPKN 205
Query: 202 TIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
T+ +DDE A +L LI L + DDV V+++
Sbjct: 206 TVRIDDEDTAQKL-LGLIEGLEDNDDVQNVWSN 237
>gi|255971123|ref|ZP_05421709.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255962141|gb|EET94617.1| conserved hypothetical protein [Enterococcus faecalis T1]
Length = 242
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GGP+P N L ++KAK ++P D + R IK+AS G+ E + E YE YG GGV
Sbjct: 36 AKAGGPDPAMNPALRLAVDKAKSANMPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLL 136
+++V LTD R+ VR GG + + GSV + F R + IK D ++D +L
Sbjct: 96 AVLVHALTDNRNRTATNVRVAFTRNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ L+AG ED+ P +++ + +++T + L +A +
Sbjct: 156 EVVLEAGGEDLETSP------------EVFEIYTAPEDFTAVRDALEQADYSLAQAELT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T + ++DE + L+ KL + DDV V+T
Sbjct: 203 MVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
>gi|445062431|ref|ZP_21374822.1| hypothetical protein H263_03411 [Brachyspira hampsonii 30599]
gi|444506222|gb|ELV06593.1| hypothetical protein H263_03411 [Brachyspira hampsonii 30599]
Length = 247
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGG-PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG P+P N L V+ KAK ++P D ++R IKR + G+ A IE++ YE Y GG
Sbjct: 36 VKEGGSPDPDQNARLRMVIVKAKGTNMPNDNIDRAIKRGAGAGEGANIEEMSYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I+V+V TD R+ A +R + GG +A+ G+V ++F++ VV I ++ L+D
Sbjct: 96 VAIIVDVATDNKNRTAAEIRSIFSKNGGNLAENGAVSWQFKKKAVVIIPAAGNTEESLMD 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
I LDAGAED+ ++ E + + + + I L+ GI E+ +
Sbjct: 156 IVLDAGAEDI------------EQDEEVFTITGPMEALSSIVDALKAKGIEPESAEIVRV 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T + +A ++ K +I + DDV AV T+
Sbjct: 204 ADNTMTIAESDAKKVMK-IIGLFEDHDDVSAVATN 237
>gi|254516711|ref|ZP_05128770.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
NOR5-3]
gi|219675134|gb|EED31501.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
NOR5-3]
Length = 248
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 116/214 (54%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K+GGP P N L A ++KA ++ +D ++R I R + + +E++ YE Y GGV
Sbjct: 36 AKQGGPLPEDNPRLRAAVDKALGSNMTRDTIDRAIARGAGNNEADDVEELTYEGYAPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VEV+TD R+VA VR GG + GSV + F R ++ AD++Q+++
Sbjct: 96 AVLVEVMTDNRNRTVAEVRHAFSKRGGNLGTDGSVAYLFERKGQISFA-PGADEEQVMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED+ +T +D + +V + ++++ + + EAG+ D ++
Sbjct: 155 ALEAGAEDI--------ETADDGS---IEVTTAWEDFSGVKAAMEEAGLE-PADGEVTMV 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TT+ VD E LI L ELDDV VY++
Sbjct: 203 ASTTVPVDASGAETVMGLIDALEELDDVQNVYSN 236
>gi|254303430|ref|ZP_04970788.1| hypothetical protein FNP_1082 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323622|gb|EDK88872.1| hypothetical protein FNP_1082 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 249
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGSDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ ++ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEMRMTFSRKDGNLGADGAVSWMFKKKGIITVKAEGIDTDEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV E E Y++V + + + L+ AG +E S ++
Sbjct: 156 ALEAGAEDVTEE------------EGYFEVTTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+++ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVQITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|375096058|ref|ZP_09742323.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
marina XMU15]
gi|374656791|gb|EHR51624.1| DNA-binding regulatory protein, YebC/PmpR family [Saccharomonospora
marina XMU15]
Length = 249
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP+D +ER KR + E G + YE Y G
Sbjct: 36 ARTGGGDPEGNPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGADWQNITYEGYAPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ + VR + GG +ADPGSV + F R VV + +D +L
Sbjct: 96 VAVLIECLTDNKNRAASEVRTALTRNGGSLADPGSVAYLFNRKGVVIMPKNGLSEDDVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E ++++S + + + L++AG +E+ + +
Sbjct: 156 AVLDAGAEEV-------NDLGES-----FEIISEAGDLVAVRKALQDAGYDYESAD-ANF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP + +D E LI L + DDV VY++
Sbjct: 203 LPSVNVPLDAEGARKVFRLIEALEDCDDVQNVYSN 237
>gi|218133601|ref|ZP_03462405.1| hypothetical protein BACPEC_01470 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990976|gb|EEC56982.1| DNA-binding regulatory protein, YebC/PmpR family [[Bacteroides]
pectinophilus ATCC 43243]
Length = 248
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 18/223 (8%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY 73
K + VK+GGP+ +N+ L V+ KAK ++P D +ER IK+A+ + VYE Y
Sbjct: 30 KEIMVAVKEGGPDVNNNSKLRTVVAKAKANNMPNDTIERAIKKAAGSDASNYESVVYEGY 89
Query: 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF--RRARVVNIKFTDAD 131
G G +I+VE LTD R+ + +R GG + PG V F F + +V+ + D D
Sbjct: 90 GPSGSAIIVEALTDNRNRAASNIRSAFTKGGGSIGTPGCVSFMFDDKGLIIVSKEECDMD 149
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
D L+ IALDAGA+D E EDD+ +++ + D++ + L E IP +
Sbjct: 150 ADDLMMIALDAGADDFSE----EDDS--------FEITTAPDDFETVRQALEEQKIPMAS 197
Query: 192 DNGSELLPITTIEVDDEA--MELNKELIAKLLELDDVDAVYTD 232
++ +P +E+ E ++N+ L+ L E DDV VY +
Sbjct: 198 AEVTK-IPQNYVELTSEEDIKKMNRILML-LDEDDDVQNVYHN 238
>gi|444305675|ref|ZP_21141454.1| hypothetical protein G205_08768 [Arthrobacter sp. SJCon]
gi|443482005|gb|ELT44921.1| hypothetical protein G205_08768 [Arthrobacter sp. SJCon]
Length = 251
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 121/240 (50%), Gaps = 22/240 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I KS+ + +K GGP+ N L + KAK+ VP D ++R I
Sbjct: 11 KHKKAIIDSRRAKSFAKLIKNIEVAARMGGPDLAGNPGLELAVTKAKKTSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + E +YE G G ++++E LTD R+ + VR + GG +ADPGS
Sbjct: 71 KRGAGLTGEVVDYTEIMYEARGPQGSALLIECLTDNKNRAASEVRLAISRNGGTIADPGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V + F R VV + +D +L LDAGAE+V +D+ D +++ S
Sbjct: 131 VSYLFTRKGVVTLPKNGLSEDDVLMAVLDAGAEEV------KDNGDS------FEIHSEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ I L+EAGI ++TD E +P +++D + +L L +LDDV VYT+
Sbjct: 179 GDLPAIREALKEAGIEYDTDE-VEFVPSMQVDLDLDGARKFLKLSDALEDLDDVQNVYTN 237
>gi|171778636|ref|ZP_02919732.1| hypothetical protein STRINF_00584 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282593|gb|EDT48017.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 256
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 126/257 (49%), Gaps = 39/257 (15%)
Query: 2 QRKQSCIRGWGRKSYLRN-----------------------VKKGGPNPTSNTVLAAVLE 38
R++ C+ G + S ++N K GG +P+ N L VL+
Sbjct: 10 NREEFCMSGHNKWSKIKNKKGEADAKRGAIFNKLSREIFVAAKAGGGDPSMNASLRMVLD 69
Query: 39 KAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVR 97
KA+ ++PKD + R IK+A++ G + E YE YG GGV+I+V LTD R+ A +
Sbjct: 70 KARAANMPKDNINRAIKKATDVGDTTNYDEITYEGYGPGGVAILVHTLTDNKKRTDANMH 129
Query: 98 EVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNED 155
+ GG M GSV + F R V++ + D D+D +L++ LDA AED+
Sbjct: 130 TIFTRNGGNMGSTGSVAYMFERKGYIVIDRENLDLDEDSILELILDAEAEDL-------- 181
Query: 156 DTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKE 215
T +D +++++ S + + L+ I F S ++P I +D E ++ +
Sbjct: 182 KTSDDA----FEILTESKEFPAVKEALQAQNIEFAQAQLS-MIPQNYISLDAEQADILET 236
Query: 216 LIAKLLELDDVDAVYTD 232
L+ KL + DDV VYT+
Sbjct: 237 LVDKLEDDDDVQDVYTN 253
>gi|108804157|ref|YP_644094.1| hypothetical protein Rxyl_1318 [Rubrobacter xylanophilus DSM 9941]
gi|118573928|sp|Q1AWE6.1|Y1318_RUBXD RecName: Full=Probable transcriptional regulatory protein Rxyl_1318
gi|108765400|gb|ABG04282.1| protein of unknown function DUF28 [Rubrobacter xylanophilus DSM
9941]
Length = 250
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
++GG +P +N LA ++KAK+ ++P D ++R I R + G EA + YE Y GG
Sbjct: 36 AREGGGDPEANPALALAVQKAKDANMPNDNIQRAIDRGTGAGSEAGDYEHITYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++VEVLTD R+ + +R + GGK+ GSV + F R VV + +++L++
Sbjct: 96 VAVMVEVLTDNRNRAASDIRYIFSKHGGKLGTSGSVAYLFERKGVVLVPADAVGEEELME 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAEDV E D D +++V + + + L EAGI +E+ S +
Sbjct: 156 AALEAGAEDV------ELDGD------HWRVTTEPSEFMAVRQGLEEAGIRYESAQLS-M 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P+ T+++D LI L E DDV VY +
Sbjct: 203 EPMNTVKLDASTARQTLRLIDALEENDDVQEVYAN 237
>gi|444916554|ref|ZP_21236668.1| hypothetical protein D187_09136 [Cystobacter fuscus DSM 2262]
gi|444712075|gb|ELW53007.1| hypothetical protein D187_09136 [Cystobacter fuscus DSM 2262]
Length = 229
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 114/213 (53%), Gaps = 12/213 (5%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P +N L L+ A+ ++PKD VE IKRAS + + + +YE YG G+
Sbjct: 23 VKAGGPSPDNNPALRRALQNARHGNMPKDKVEAAIKRASGQDVKNYEVALYEGYGPHGIP 82
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQL-LDI 138
I+VE TD + R+VA VR KD GG M + GSV F F+ V + D+D L LD+
Sbjct: 83 IIVETATDNVVRTVANVRHAFKDGGGNMGNTGSVGFLFQHMGVFRLSPEGVDQDALELDL 142
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSEL 197
+D G +++ E T E + E+ + +++ + + E G+ P + SE
Sbjct: 143 -IDHGLQEMGE------GTGE-KGEKQLIIRCAFNDFGRLQHAIEEKGLSPLSAE--SEY 192
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+P+ + + +E + +++ KL + +DV V+
Sbjct: 193 IPLNPVTLPEEQAQEVLKVVDKLEQDEDVQRVF 225
>gi|421486657|ref|ZP_15934194.1| hypothetical protein QWC_28548 [Achromobacter piechaudii HLE]
gi|400195117|gb|EJO28116.1| hypothetical protein QWC_28548 [Achromobacter piechaudii HLE]
Length = 243
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
+ GGP+P SN L +KA + ++PKD ++R I+R A +A+ E YE YG GG
Sbjct: 36 ARAGGPDPDSNPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGDAYEEVRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR-ARVVNIKFTDADKDQLLD 137
+++V+ +TD TR+VA VR GG + GSV F F+ + V T DK +++
Sbjct: 96 AVIVDCMTDNRTRTVAEVRHAFAKNGGNLGQEGSVAFMFKHCGQFVFAPGTPEDK--VME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAEDV+ TDE E +VV +Y + +AG+ E D G +
Sbjct: 154 AALEAGAEDVL--------TDE---EGVIEVVCAPADYAAVRKAFDDAGLKAEVD-GIVM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ E+ E ++L+ L LDDV VYT
Sbjct: 202 KALNETELAGEDAIKMQKLLDALEGLDDVQEVYT 235
>gi|423349009|ref|ZP_17326665.1| UPF0082 protein [Scardovia wiggsiae F0424]
gi|393703238|gb|EJD65439.1| UPF0082 protein [Scardovia wiggsiae F0424]
Length = 252
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 16/198 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L + KAK+ VP D + R +KR S E G + E VYE Y GG
Sbjct: 36 ARTGGGDPNGNPTLYDAIVKAKKSSVPADNITRAVKRGSGEEAGGANYEEIVYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+ ++V+ LTD R+ A VR + GG +A+ GSV F F R + + D D L D
Sbjct: 96 IGLIVQCLTDNRNRAAADVRSTLSKNGGSLAENGSVSFNFERKGQIVVPSEGVDFDSLFD 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A +AGAEDV E+ + Y + SD T + L+E+GI +++ + L
Sbjct: 156 MAAEAGAEDV-----------ENNGDTYIVTTAPSDVVT-VRKVLQESGIDYDSAE-TTL 202
Query: 198 LPITTIEVD-DEAMELNK 214
+P+ +++D D A+++N+
Sbjct: 203 VPLNEVDLDLDAAVKVNR 220
>gi|406933503|gb|EKD68139.1| hypothetical protein ACD_48C00062G0002 [uncultured bacterium]
Length = 245
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYE 71
K+ K GG + T N L +EKAKE +VPKD ++R+IK+ + K E E +YE
Sbjct: 30 KAITMAAKDGGGDATMNFSLRLAVEKAKEENVPKDNIDRSIKKGTGELKDGEEIQEIIYE 89
Query: 72 VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK----- 126
YG GG++++VE LTD R+V+ V+ G + PGSV ++F R VV I
Sbjct: 90 GYGPGGIAVLVETLTDNKNRTVSEVKNAFTKHNGSVGGPGSVQWQFERRGVVAISNNQLA 149
Query: 127 FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAG 186
+ DK++L ++AGA D++E + + +V + + + L+ G
Sbjct: 150 INNLDKEELELTLIEAGASDILE------------FDEHIEVRCPVEKFQSVLEALKVCG 197
Query: 187 IPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 233
I D G + + + VD E +E + L L LDDV+ +YT++
Sbjct: 198 ITKPEDAGLKWVAKEEVAVDGETVEKMEILYDALDALDDVNEIYTNE 244
>gi|383787008|ref|YP_005471577.1| YebC/PmpR family DNA-binding regulatory protein [Fervidobacterium
pennivorans DSM 9078]
gi|383109855|gb|AFG35458.1| DNA-binding regulatory protein, YebC/PmpR family [Fervidobacterium
pennivorans DSM 9078]
Length = 252
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 113/216 (52%), Gaps = 19/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
++GG NP +N L AVLEKAKE ++PKD +ER+IK+ + E E + E +YE Y GGV
Sbjct: 36 AREGGGNPETNPRLRAVLEKAKEANMPKDTIERSIKKGTGELEGERYEEVIYEAYAPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
++ + LTD R+ +R ++ GG +A+ GSV + F R VV I + AD D+
Sbjct: 96 ALYILALTDNKNRTAQELRHILSKNGGSLAESGSVAWIFERKGVVEIPREKIADMDEFTL 155
Query: 138 IALDAGAEDVIEP-PVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+A+DAGAED+ E PV V ++ +N T + L + G FE
Sbjct: 156 LAIDAGAEDIEEGDPV--------------LVYTSPENLTTLRENLAKNG--FEGSAKIT 199
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++V E +L+ L + DDV V+ +
Sbjct: 200 YKPKNYVKVSGSDAEKVLKLVDALEDNDDVQEVFGN 235
>gi|331002032|ref|ZP_08325552.1| hypothetical protein HMPREF0491_00414 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411828|gb|EGG91233.1| hypothetical protein HMPREF0491_00414 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 242
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK +VP D +ER IK+A+ + + +YE YG GV
Sbjct: 36 VKEGGPDPNNNSKLRDVIAKAKANNVPNDTIERGIKKAAGDVNSVNYEHNIYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+VE LTD R+ A VR GG + G V F F + +++ + D D D+L+
Sbjct: 96 AIIVETLTDNKNRTAANVRAAFTKGGGNIGAQGCVSFMFDKKGQIIIDKEECDMDSDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
ALD GAED DE E Y++++ DN++ + L + IP +
Sbjct: 156 MAALDLGAEDF---------NDE---EDSYEILTDPDNFSAVREGLEKLNIPMANAEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVY 230
++P + + DE I LL+ DDV VY
Sbjct: 203 MIPQNWVTLSDEEDIKKMNRILDLLDAEDDVQNVY 237
>gi|256846085|ref|ZP_05551543.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|256719644|gb|EEU33199.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
Length = 249
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGSDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ ++ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEMRMTFTRKDGNLGADGAVSWMFKKKGIITVKAEGIDTDEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV EDD Y++V + + + L+ AG +E S ++
Sbjct: 156 ALEAGAEDVT-----EDDG-------YFEVTTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+E+ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVEISD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|408784879|ref|ZP_11196629.1| hypothetical protein C241_00330 [Rhizobium lupini HPC(L)]
gi|424912441|ref|ZP_18335818.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|392848472|gb|EJB00995.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|408489218|gb|EKJ97522.1| hypothetical protein C241_00330 [Rhizobium lupini HPC(L)]
Length = 248
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ AK +PKD +ER IK+A+ E + E YE YG GGV+
Sbjct: 36 AKTGMPDPNMNPRLRLAIQNAKAQSMPKDNIERAIKKAAGAEGENYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR + GG + + GSV F F R ++ K D D++++ A
Sbjct: 96 VIVEALTDNRNRTASNVRSIFTKAGGALGETGSVSFSFDRVGEISYKAEVGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV + +E + ++ + +++ L G+ E ++ +
Sbjct: 156 IEAGADDV------------ESSEDGHIIICGFEAMNEVSKALE--GVLGEAESVKAIWK 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD+E + +LI L + DDV VY++
Sbjct: 202 PQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|422338848|ref|ZP_16419808.1| hypothetical protein HMPREF9369_00895 [Fusobacterium nucleatum
subsp. polymorphum F0401]
gi|355371975|gb|EHG19318.1| hypothetical protein HMPREF9369_00895 [Fusobacterium nucleatum
subsp. polymorphum F0401]
Length = 249
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGSDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ V+ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEMRMTFTRKDGNLGADGAVSWMFKKKGVITVKAEGIDADEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV EDD Y++V + + + L+ AG +E S ++
Sbjct: 156 ALEAGAEDVT-----EDDG-------YFEVTTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+E+ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVEITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|336063882|ref|YP_004558741.1| hypothetical protein SGPB_0545 [Streptococcus pasteurianus ATCC
43144]
gi|334282082|dbj|BAK29655.1| conserved hypothetical protein [Streptococcus pasteurianus ATCC
43144]
Length = 241
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K GG +P+ N L VL+KA+ ++PKD + R IK+A++ G + E YE YG GG+
Sbjct: 36 AKAGGGDPSMNASLRIVLDKARAANMPKDNINRAIKKATDVGDTTNYDEITYEGYGPGGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V LTD R+ A + + GG M GSV + F R V++ D D+D +L
Sbjct: 96 AILVHTLTDNKKRTDANMHTIFTRNGGNMGSTGSVAYMFDRKGYIVIDRDNLDLDEDAML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ LDAGAED+ T +D +++ + + + + L+ + F S
Sbjct: 156 EVILDAGAEDL--------KTSDDA----FEIFTEAKEFPAVKEALQVQNLEFAQAQLS- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P + +DDE ++ + L+ KL + DDV VYT+
Sbjct: 203 MIPQNYVSLDDEQADILETLVDKLEDDDDVQDVYTN 238
>gi|418721584|ref|ZP_13280760.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. UI 09149]
gi|410741937|gb|EKQ90688.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. UI 09149]
Length = 249
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 116/213 (54%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER IK+ + + + E+ +YE +G G++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGELEGVVYEECLYECFGPAGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+DIA
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDIA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE + Y+V++T D+Y + L E G+ E +
Sbjct: 157 VGGGAEDVI----NEGEV--------YRVITTPDDYESVLHALNEKGLKSEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ D E E +LI +L DDV +V ++
Sbjct: 205 VSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|398851128|ref|ZP_10607818.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM80]
gi|398989493|ref|ZP_10692733.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM24]
gi|399013205|ref|ZP_10715516.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM16]
gi|398114329|gb|EJM04156.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM16]
gi|398147457|gb|EJM36163.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM24]
gi|398247238|gb|EJN32693.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM80]
Length = 248
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALSANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGATEADNVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L + AL+A A+DV+ +ED + V ++ ++
Sbjct: 134 FERKGQISFA-PGVDEDALTEAALEADADDVVS---HEDGS--------IDVFTSFTSFY 181
Query: 177 DITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG F+ D+ ++ P T+ E+D E E +LI L +LDDV VY++
Sbjct: 182 AVRNALEAAG--FKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|296122800|ref|YP_003630578.1| hypothetical protein Plim_2554 [Planctomyces limnophilus DSM 3776]
gi|296015140|gb|ADG68379.1| protein of unknown function DUF28 [Planctomyces limnophilus DSM
3776]
Length = 248
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 18/226 (7%)
Query: 3 RKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ 62
+K+ + G K+ + ++GG +P +N L +++AK+ +P D +ER IK+ + + Q
Sbjct: 19 QKRGKLFGKLSKAIIVAAQRGG-DPAANLALRYAIDRAKKSSMPADTIERAIKKGTGELQ 77
Query: 63 EAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR 121
E+V YE YG GGV+++ ++LT+ R+ VR + GG + G V + F R
Sbjct: 78 ADNYEQVLYEGYGPGGVAVLCDILTENRNRTAGEVRRIFDIHGGNLGSTGCVAWMFDRRG 137
Query: 122 VVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTK 181
+ +K D+D L++IALDAGA DV + V+ + +T +
Sbjct: 138 LYAVKAGVTDEDTLMEIALDAGALDVTADAGG------------FSVICPPETFTPVGEA 185
Query: 182 LREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 227
L +AGIP E+ + +LP T+E+D +E+ + ++A + L+D D
Sbjct: 186 LEKAGIPMESAEIT-MLPQNTVELD---LEMGRAVLALIDALEDND 227
>gi|226954206|ref|ZP_03824670.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
gi|226835075|gb|EEH67458.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
Length = 279
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 130/239 (54%), Gaps = 28/239 (11%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
KQ RG Y+R + + GGP+ SN L AV+EKA +++ +D + R I+R +
Sbjct: 46 KQDASRGKVFTKYIREIVTAARLGGPDAASNPRLRAVVEKALSVNMTRDTINRAIQRGA- 104
Query: 60 KGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF 117
G+E E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 105 GGEENDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTNGSVAYLF 164
Query: 118 RRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
+ I F D +D+++++AL+AGA+D+ + DED V+++ +++
Sbjct: 165 TKRG--EISFEDVSLEDKIMEVALEAGADDI--------EVDEDS----ILVITSPESFG 210
Query: 177 DITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
++ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 211 EVQDALAAAGL--KSDNAEVVMSPSTKAEITDVDQAKQIMK-MIDMLEDLDDVQNVYTN 266
>gi|365824914|ref|ZP_09366874.1| hypothetical protein HMPREF0045_00510 [Actinomyces graevenitzii
C83]
gi|365259102|gb|EHM89097.1| hypothetical protein HMPREF0045_00510 [Actinomyces graevenitzii
C83]
Length = 254
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 108/214 (50%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D + R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKNSVPADNITRAVKRGSGEEAGGADWQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFT-DADKDQLLD 137
+ +VE LTD R+ + VR G +ADPGSV + F R VV + D D+D +L
Sbjct: 97 AFLVECLTDNRNRAASDVRVAFTRNNGSLADPGSVAYNFSRKGVVEVSAADDVDEDSILM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V VNE + + + ++ + T L EAG+ +++ +
Sbjct: 157 AVLDAGAEEV----VNEGEG--------FSIYCEPNDVVAVRTALTEAGMDYDSAE-VQF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T IEVD + LI L + DDV V+T
Sbjct: 204 VAGTKIEVDADTARKVMRLIDALEDSDDVQNVFT 237
>gi|72162495|ref|YP_290152.1| hypothetical protein Tfu_2096 [Thermobifida fusca YX]
gi|119372121|sp|Q47N40.1|Y2096_THEFY RecName: Full=Probable transcriptional regulatory protein Tfu_2096
gi|71916227|gb|AAZ56129.1| Protein of unknown function DUF28 [Thermobifida fusca YX]
Length = 249
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 109/214 (50%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + E G + +YE Y GGV
Sbjct: 37 RTGGGDPDGNPTLYDAIQKAKKNSVPLDNIERARKRGAGEEAGGADWETIMYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR V GG MAD GSV + F R +V + +D +
Sbjct: 97 ALLVECLTDNRNRAASEVRVAVTRNGGSMADAGSVSYLFNRKGLVVVPKEGTTEDDVTLA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAEDV +D E ++V+ + + T L+EAGI +E+ S +
Sbjct: 157 VLDAGAEDV-------NDVGE-----AFEVICEPSDLVAVRTALQEAGIEYESAELS-FI 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + +D+E L+ L + DDV VYT+
Sbjct: 204 PSVEVPLDEEGARKVMRLVDALEDSDDVQNVYTN 237
>gi|399524508|ref|ZP_10765046.1| DNA-binding regulatory protein, YebC/PmpR family [Atopobium sp.
ICM58]
gi|398374285|gb|EJN51971.1| DNA-binding regulatory protein, YebC/PmpR family [Atopobium sp.
ICM58]
Length = 253
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 18/216 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKNSVPADNIDRAVKRGSGAEAGGANYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+ +VE LTD R+ + VR GG +ADPGSV + F R VV + D D++ ++
Sbjct: 97 AFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVSYLFSRRGVVEVPAADGVDEESIMM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V ED D + + S + + + L+EAGI +++ +
Sbjct: 157 AVLDAGAEEV------EDAGD------LFVIESDPKDVVAVRSALQEAGIDYDSAE-VQF 203
Query: 198 LPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
+ T +E+D E A+++NK LI L + DDV +YT+
Sbjct: 204 VASTEVELDLEGALKVNK-LIDVLEDSDDVQNIYTN 238
>gi|306833043|ref|ZP_07466175.1| glucose-1-phosphate adenylyltransferase [Streptococcus bovis ATCC
700338]
gi|304424942|gb|EFM28076.1| glucose-1-phosphate adenylyltransferase [Streptococcus bovis ATCC
700338]
Length = 241
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K GG +P+ N L VL+KA+ ++PKD + R IK+A++ G + E YE YG GG+
Sbjct: 36 AKAGGGDPSMNASLRIVLDKARAANMPKDNINRAIKKATDVGDTTNYDEVTYEGYGPGGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V LTD R+ A + + GG M GSV + F R V++ D D+D +L
Sbjct: 96 AILVHTLTDNKKRTDANMHTIFTRNGGNMGSTGSVAYMFDRKGYIVIDRDNLDLDEDAML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
++ LDAGAED+ T +D +++ + + + + L+ + F S
Sbjct: 156 EVILDAGAEDL--------KTSDDA----FEIFTEAKEFPAVKEALQVQNLEFAQAQLS- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P + +DDE ++ + L+ KL + DDV VYT+
Sbjct: 203 MIPQNYVSLDDEQADILETLVDKLEDDDDVQDVYTN 238
>gi|359766950|ref|ZP_09270744.1| hypothetical protein GOPIP_056_00220 [Gordonia polyisoprenivorans
NBRC 16320]
gi|378717712|ref|YP_005282601.1| hypothetical protein GPOL_c22030 [Gordonia polyisoprenivorans VH2]
gi|359315578|dbj|GAB23577.1| hypothetical protein GOPIP_056_00220 [Gordonia polyisoprenivorans
NBRC 16320]
gi|375752415|gb|AFA73235.1| UPF0082 protein [Gordonia polyisoprenivorans VH2]
Length = 250
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 108/214 (50%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + + YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGGGEEAGGADWQTITYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E LTD R+ VR + GG MADPGSV + F R VV ++ +D +L
Sbjct: 97 AILIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVAYLFTRKGVVTLEKNGQSEDDILMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++VVS + + T L+EAGI +E+ ++
Sbjct: 157 VLDAGAEEV-------NDLGE-----TFEVVSEPTDLVAVRTALQEAGIDYESAE-ADFR 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD E +LI L + DDV VY++
Sbjct: 204 ASVEVPVDAEGARKVFKLIDALEDSDDVQNVYSN 237
>gi|429753994|ref|ZP_19286749.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 326 str. F0382]
gi|429170881|gb|EKY12541.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 326 str. F0382]
Length = 239
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 13/211 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGP+P +N+ L AV++ AK ++PK+ +ER IK+ASEK + E ++E Y G++
Sbjct: 34 VKEGGPHPETNSRLRAVIQNAKAANMPKENIERAIKKASEKDTANYKEVLFEGYAPHGIA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+++E TD R+VA +R C G + GSV F F I T D ++L
Sbjct: 94 LLIETATDNNNRTVANIRSYFNKCNGTLGTSGSVEFMFDHTCNFRINATGIDPEELELEM 153
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+D GAE+V V+ED + + +++ I +L GI +G E +P
Sbjct: 154 IDFGAEEVF---VDEDGI---------LIYAPFESFGAIQKELESRGIEI-LSSGFERIP 200
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
T E+ E ++L+ K+ E +DV VY
Sbjct: 201 QVTKELTPEEQADVEKLLEKIEEDEDVQNVY 231
>gi|395800727|ref|ZP_10479999.1| hypothetical protein FF52_02655 [Flavobacterium sp. F52]
gi|395437135|gb|EJG03057.1| hypothetical protein FF52_02655 [Flavobacterium sp. F52]
Length = 237
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGPNP SN+ L AV++ AK ++PKD VER IK AS
Sbjct: 13 MKRWSAMAKTFTRIGKDIVMAVKEGGPNPDSNSRLRAVIQNAKAANMPKDNVERAIKNAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
K + E ++E Y G++I++E +D R+VA +R C G M GSV F F
Sbjct: 73 NKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGTMGTQGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V E DED Y S + +
Sbjct: 133 HTCNFRIAKDGIDAEELELELIDFGAEEVFE--------DEDGILIYAPFGS----FGAL 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L G+ +G E +P T E+ + + ++LI K+ E DDV VY
Sbjct: 181 QKELENRGLEI-LSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDVMNVY 231
>gi|372325544|ref|ZP_09520133.1| hypothetical protein OKIT_1676 [Oenococcus kitaharae DSM 17330]
gi|366984352|gb|EHN59751.1| hypothetical protein OKIT_1676 [Oenococcus kitaharae DSM 17330]
Length = 240
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P++N L V++KAK ++PKD V+R + +A+ G F E YE Y GG++
Sbjct: 36 AKAGGADPSANASLRLVMDKAKAANMPKDNVQRALDKATGAGDIKFEEATYEGYAPGGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVV--NIKFTDADKDQLL 136
++VE TD I R+V+ VR GG + GSV F+F RR V + + +DQ++
Sbjct: 96 VLVETSTDNINRTVSTVRNSFSHHGGALGTTGSVSFQFDRRGHFVIDREEHPEITEDQVM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ A+DAGAEDV ++ +++ S ++ + L + G +
Sbjct: 156 EDAIDAGAEDV------------QTSDEAFEIYSDPTDFAAVEDSLVKKGYDL-AEAEIT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P ++V + E ++L+ +L + DDV AVYT
Sbjct: 203 MIPQNPMDVPEADQEKFEKLVDELEDNDDVLAVYT 237
>gi|115526759|ref|YP_783670.1| hypothetical protein RPE_4771 [Rhodopseudomonas palustris BisA53]
gi|122294482|sp|Q07H94.1|Y4771_RHOP5 RecName: Full=Probable transcriptional regulatory protein RPE_4771
gi|115520706|gb|ABJ08690.1| protein of unknown function DUF28 [Rhodopseudomonas palustris
BisA53]
Length = 248
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L + + A++ ++PKD +ER IK+A + + E YE YG GGV+
Sbjct: 36 AKLGAPDPAMNARLRSAIIAARQENMPKDNIERAIKKAIGSDGDNYDEMRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F ++ A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVAFMFDHTGLIEYDAGVASADDVLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV+ ++V ++ D + ++ L F + L+
Sbjct: 156 IEAGADDVLSSDTG------------HEVYASHDTFREVAKALE---AKFGEARKAALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +LI L E DDV VY +
Sbjct: 201 KPQNTVPVDDETGEKLLKLIDLLNEHDDVQNVYAN 235
>gi|52081262|ref|YP_080053.1| hypothetical protein BL01150 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319644772|ref|ZP_07999005.1| hypothetical protein HMPREF1012_00038 [Bacillus sp. BT1B_CT2]
gi|404490141|ref|YP_006714247.1| hypothetical protein BLi02909 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423683242|ref|ZP_17658081.1| hypothetical protein MUY_03095 [Bacillus licheniformis WX-02]
gi|67462036|sp|Q65GN7.1|Y2909_BACLD RecName: Full=Probable transcriptional regulatory protein
BLi02909/BL01150
gi|52004473|gb|AAU24415.1| conserved protein YrbC [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52349143|gb|AAU41777.1| DNA-binding regulatory protein YrbC [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317392581|gb|EFV73375.1| hypothetical protein HMPREF1012_00038 [Bacillus sp. BT1B_CT2]
gi|383440016|gb|EID47791.1| hypothetical protein MUY_03095 [Bacillus licheniformis WX-02]
Length = 240
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 116/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
K+GGP+P SN L V++KAK ++P D ++R IK+AS + +++ E YE YG GV
Sbjct: 36 AKEGGPDPESNASLRLVIDKAKNANMPNDNIDRAIKKASGSQDGKSYEEITYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA--DKDQLL 136
+++V+ LTD R+ +VR GG + + G V + F R + I+ D D+++ +
Sbjct: 96 AVMVKCLTDNKNRTATSVRTAFSKNGGSLGETGCVSYMFDRKGYIAIEREDLEIDEEEFM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+DAGAE++ + +E +++ + + + ++ L E G T +
Sbjct: 156 LEVIDAGAEEL------------ETSEELFEIYTEPEQFEEVKKSLEERGYKLATSEIT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T EVD+ E ++LI L + DDV VYT+
Sbjct: 203 MVPQTYAEVDEALQEKVEKLIDVLEDDDDVQEVYTN 238
>gi|294650143|ref|ZP_06727523.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|292823962|gb|EFF82785.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 249
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 130/239 (54%), Gaps = 28/239 (11%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
KQ RG Y+R + + GGP+ SN L AV+EKA +++ +D + R I+R +
Sbjct: 16 KQDASRGKVFTKYIREIVTAARLGGPDAASNPRLRAVVEKALSVNMTRDTINRAIQRGA- 74
Query: 60 KGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF 117
G+E E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 75 GGEENDDLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFSKTNGNLGTNGSVAYLF 134
Query: 118 RRARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
+ I F D +D+++++AL+AGA+D+ + DED V+++ +++
Sbjct: 135 TKRG--EISFEDVSLEDKIMEVALEAGADDI--------EVDEDS----ILVITSPESFG 180
Query: 177 DITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
++ L AG+ ++DN ++ P T E+ D+A ++ K +I L +LDDV VYT+
Sbjct: 181 EVQDALAAAGL--KSDNAEVVMSPSTKAEITDVDQAKQIMK-MIDMLEDLDDVQNVYTN 236
>gi|297559801|ref|YP_003678775.1| hypothetical protein Ndas_0825 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844249|gb|ADH66269.1| protein of unknown function DUF28 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 249
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KA++ VP D +ER KR S E G + +YE Y GGV
Sbjct: 37 RTGGGDPDGNPTLYDAIQKARKNSVPLDNIERARKRGSGEEAGGAEWQTIMYEGYAAGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR V GG MAD GSV + F R VV + +D +
Sbjct: 97 ALLVECLTDNRNRAASEVRVAVSRNGGNMADAGSVSYLFNRKGVVIVPKEGTTEDDVTLA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAE+V ED E +++V + + + T L+EAGI +++ S L
Sbjct: 157 VLEAGAEEV-----------EDLGES-FEIVCEATDLVAVRTALQEAGIEYDSAE-SSFL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + VD E + ++ L + DDV V+T+
Sbjct: 204 PTMEVPVDAETAKKVMRVVDALEDSDDVQNVFTN 237
>gi|183219483|ref|YP_001837479.1| hypothetical protein LEPBI_I0056 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189909626|ref|YP_001961181.1| hypothetical protein LBF_0056 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|226734028|sp|B0S959.1|Y056_LEPBA RecName: Full=Probable transcriptional regulatory protein LBF_0056
gi|226734029|sp|B0SJP0.1|Y056_LEPBP RecName: Full=Probable transcriptional regulatory protein
LEPBI_I0056
gi|167774302|gb|ABZ92603.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167777905|gb|ABZ96203.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 247
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 117/216 (54%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI--EKVYEVYGYGG 77
K+GG + N L + KAK ++PKD +ER IK+ + G E + E +YE Y GG
Sbjct: 36 AKEGGGDQEGNPRLRLAVTKAKAANMPKDNIERAIKKGT-GGLEGMVYEECLYECYAPGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I+V+VLTDK +R+ ++ ++ GG +A+ G+V F R + +K ++ L D
Sbjct: 95 VAIMVDVLTDKKSRTTPEIKSILTKLGGSLANAGAVSRLFERKGQLTLKADQISEEALFD 154
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+AL AGAED+ VN+ Y V+++ Y + + L G+ E ++ +
Sbjct: 155 LALGAGAEDI---QVNDG---------MYVVLTSPSEYEAVQSALSSKGLNME-ESEIKY 201
Query: 198 LPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
+P+TT+EV++ E E +LI L DDV V ++
Sbjct: 202 IPMTTVEVNEKETAEKVMKLIENLEANDDVQGVSSN 237
>gi|365854887|ref|ZP_09394951.1| DNA-binding regulatory protein, YebC/PmpR family [Acetobacteraceae
bacterium AT-5844]
gi|363719751|gb|EHM03051.1| DNA-binding regulatory protein, YebC/PmpR family [Acetobacteraceae
bacterium AT-5844]
Length = 250
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 118/236 (50%), Gaps = 20/236 (8%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q R +R + ++G P+P N L + ++ A+ ++ KD ++R I
Sbjct: 11 MHRKGAQDAKRARAFAKLIREITVSARQGLPDPAFNPRLRSAVQAARVANMTKDTIDRAI 70
Query: 55 KRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
K+AS E G E ++E YE YG GV+I+VE LTD R+ + +R GG M + GSV
Sbjct: 71 KKASGEGGGEDYVEMRYEGYGPAGVAIIVEALTDNRNRTASDIRSAFSKFGGAMGETGSV 130
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F+F R VV + AD D +L+ A++AGA DV + E +++ + +
Sbjct: 131 SFQFERNGVVRYPASIADADTVLEAAIEAGAADV------------ESTEEGHEIRTGIE 178
Query: 174 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 229
+ + L E P E+ E P T+E+D+E +LI L E DDV V
Sbjct: 179 DLFAVRDVLEEKFGPAESAK-LEWRPNVTVELDEEKARSVMKLIDVLDEHDDVQTV 233
>gi|452909798|ref|ZP_21958482.1| hypothetical protein YebC [Kocuria palustris PEL]
gi|452835170|gb|EME37967.1| hypothetical protein YebC [Kocuria palustris PEL]
Length = 253
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 119/241 (49%), Gaps = 23/241 (9%)
Query: 2 QRKQSCIRGWGRKSYLRNVK-------KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I K++ + +K +GG + N L + KAK+ VP D ++R I
Sbjct: 11 KHKKAAIDAKRAKAFAKYIKGIEVAARQGGADTAGNPALDLAVSKAKKNSVPNDNIDRAI 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR + E + E YE G G ++ +E LTD R+ + VR V GG MADPGS
Sbjct: 71 KRGAGLTGEVIEYSEIFYEARGPQGSALYIECLTDNKNRAASEVRVAVTRNGGTMADPGS 130
Query: 113 VMFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVST 171
V F F R V + D +D ++ LDAGAE+VIE D+D ++V+S
Sbjct: 131 VTFMFERKGVAEVAKADGVTEDDVMMAVLDAGAEEVIE--------DQD----VFEVISE 178
Query: 172 SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ + I T L EA + + D+ + P +E+D +A L + ELDDV VY+
Sbjct: 179 ATDLPQIRTALDEAELEYNNDD-PQFRPNMKVELDADAARKFLRLADAIEELDDVQNVYS 237
Query: 232 D 232
+
Sbjct: 238 N 238
>gi|294790875|ref|ZP_06756033.1| conserved hypothetical protein [Scardovia inopinata F0304]
gi|294458772|gb|EFG27125.1| conserved hypothetical protein [Scardovia inopinata F0304]
Length = 252
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 99/192 (51%), Gaps = 15/192 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L + KAK+ VP D + R +KR S E G + E VYE Y GG
Sbjct: 36 ARTGGADPNGNPTLYDAIVKAKKSSVPADNITRAVKRGSGEEAGGANYEEIVYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V ++V+ LTD R+ A VR + GG +A+ GSV F F R + + AD D L +
Sbjct: 96 VGLIVQCLTDNRNRAAADVRSTLSKNGGSLAENGSVSFNFERKGQIIVPADSADYDSLFE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
A +AGAEDV E+ + Y + SD T + L++ G+ +++ S L
Sbjct: 156 KAAEAGAEDV-----------EENGDSYIITTAPSDLVT-VRKALQDEGVDYDSAETS-L 202
Query: 198 LPITTIEVDDEA 209
+P+ IE+D EA
Sbjct: 203 VPLNEIELDLEA 214
>gi|153955762|ref|YP_001396527.1| hypothetical protein CKL_3148 [Clostridium kluyveri DSM 555]
gi|219856129|ref|YP_002473251.1| hypothetical protein CKR_2786 [Clostridium kluyveri NBRC 12016]
gi|146348620|gb|EDK35156.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569853|dbj|BAH07837.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 246
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 116/214 (54%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
K GG NP +N+ L ++ KAK ++P+D + R IK+ S + + + E VYE YG GV+
Sbjct: 37 KDGGSNPDTNSKLRDIIAKAKSNNMPQDTINRAIKKGSGEMEGVNYEEIVYEGYGSNGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR-RARVVNIKFTDADKDQLLDI 138
++V+ LTD R+ VR + GG + G V + F+ + +V + D D+D+++
Sbjct: 97 VIVKALTDNKNRTAGNVRSIFSKQGGNLGANGCVSWMFQTKGELVVERKDDMDEDEVMMQ 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
ALDAGAED + E +++++T +++ + KL G F + + ++
Sbjct: 157 ALDAGAEDF------------NAEEEVFEIITTVEDFGSVREKLEGEGFEFISAEIT-MI 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD +A ++LI KL + DDV VY +
Sbjct: 204 PDNTVAVDMDAAGKVQKLIDKLEDDDDVQNVYHN 237
>gi|404420187|ref|ZP_11001932.1| hypothetical protein MFORT_07336 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403660291|gb|EJZ14867.1| hypothetical protein MFORT_07336 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 251
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGVSI 80
GG +P N L ++KAK+ VP D +ER KR + + YE YG GV++
Sbjct: 39 GGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGGGEEAGGADWQNITYEGYGPNGVAV 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
++E LTD R+ VR + GG MADPGSV + F R VV ++ +D +L L
Sbjct: 99 LIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFSRKGVVTLEKNGLTEDDVLMAVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AGAE+V + E ++++ + + T L+EAGI +++ S P
Sbjct: 159 EAGAEEV------------NDLEDSFEIICEPTDLVAVRTALQEAGIDYDSAEAS-FQPS 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ VD E +L+ L + DDV VYT+
Sbjct: 206 VTVPVDLEGARKVLKLVDALEDSDDVQEVYTN 237
>gi|291522356|emb|CBK80649.1| conserved hypothetical protein TIGR01033 [Coprococcus catus GD/7]
Length = 242
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 15/173 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D +ER IK+A+ + G + YE YG GV
Sbjct: 36 VKEGGSDPNNNSRLRDVIAKAKANNMPNDTIERGIKKAAGDLGSVNYENNTYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+VE LTD R+ A VR GG + G V F F + +++ + D D D L+
Sbjct: 96 AIIVETLTDNRNRTAANVRSAFTKGGGSIGTSGCVSFMFDKKGQIIIDKEECDMDADDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
IALDAGAED +DE E Y++++ D+++ + L + GIP
Sbjct: 156 MIALDAGAEDF---------SDE---EDSYEIITDPDDFSAVRDALEKEGIPM 196
>gi|440781780|ref|ZP_20960008.1| hypothetical protein F502_07568 [Clostridium pasteurianum DSM 525]
gi|440220498|gb|ELP59705.1| hypothetical protein F502_07568 [Clostridium pasteurianum DSM 525]
Length = 245
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 15/213 (7%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSI 80
K G NP +N L V+ KAK ++P+D + R IK+ A E + E VYE YG GV++
Sbjct: 37 KAGSNPDTNAKLRDVIAKAKANNMPQDTITRAIKKGAGELEGVNYEEIVYEGYGPAGVAV 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDIA 139
+V VLTD RS VR + GG + G V F F+R + I+ D D+D+++ A
Sbjct: 97 IVNVLTDNKNRSAGNVRYIFDRNGGNLGANGCVSFMFQRKGQIIIERKDGLDEDEVMMAA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAED + E +++ + ++++ + L EAG F + + ++P
Sbjct: 157 LDAGAEDF------------NAEEEAFEITTAMEDFSQVRESLEEAGYEFASAELT-MIP 203
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +++ E E ++LI KL + DDV VY +
Sbjct: 204 DTYTQLNLEDSEKVQKLIDKLEDDDDVQDVYHN 236
>gi|402820439|ref|ZP_10870006.1| hypothetical protein IMCC14465_12400 [alpha proteobacterium
IMCC14465]
gi|402511182|gb|EJW21444.1| hypothetical protein IMCC14465_12400 [alpha proteobacterium
IMCC14465]
Length = 252
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 107/216 (49%), Gaps = 15/216 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P SN L + A+ ++PKD +ER IK++++ G E + E YE +G GG+
Sbjct: 36 AKMGMPDPDSNPRLRTAINAARAQNMPKDNIERAIKKSADAGGENYEEVRYEGFGPGGIG 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ VR V GG + + GSV F F R V AD D + + A
Sbjct: 96 VIVETLTDNRNRTAGDVRTVFTKSGGNLGETGSVSFMFDRRGAVEYPGDVADADAVFEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDE--DRAERYYKVVSTSDNYTD-ITTKLREAGIPFETDNGSE 196
++AGAEDV + DDT E E + V + + D + A I ++
Sbjct: 156 IEAGAEDV----ESSDDTHEILCAMEELHNVAAALEGALDGLLGPPPSAQIVWK------ 205
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P I VD+E E ++ L +LDDV VY +
Sbjct: 206 --PQNEISVDEETAEKVLRMMEALDDLDDVQNVYAN 239
>gi|398338077|ref|ZP_10522782.1| hypothetical protein LkmesMB_22523 [Leptospira kmetyi serovar
Malaysia str. Bejo-Iso9]
Length = 249
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 115/213 (53%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE-AFIEKVYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER IK+ + + + E +YE +G GG++
Sbjct: 37 KMGGGDPEGNPRLRLAVLKAKSVNMPKDNIERAIKKGTGDLEGVTYEECLYECFGPGGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESAQIGEDELVDLA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ AGAEDVI NE D Y+V++ D+Y + L E G+ E +
Sbjct: 157 VGAGAEDVI----NEGDV--------YRVITAPDDYETVLHALNEKGLKAEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ D E E +LI +L DDV +V ++
Sbjct: 205 VSSEIADKEVAEKVMKLIDQLDGHDDVTSVTSN 237
>gi|385653007|ref|ZP_10047560.1| hypothetical protein LchrJ3_11539 [Leucobacter chromiiresistens JG
31]
Length = 254
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 17/223 (7%)
Query: 16 YLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKV 69
Y++N+ + GG + + N L ++KAK+ VP D ++R IKR + +A ++ V
Sbjct: 28 YIKNIEVAARIGGADLSGNPTLVDAVQKAKKNSVPGDNIDRAIKRGAGLDGDAVEYMTIV 87
Query: 70 YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD 129
YE YG GV++++E LTD R+ A VR + GG +ADPGSV + F R V+ +
Sbjct: 88 YEGYGPNGVALMIECLTDNKNRAAAEVRTALSRNGGTLADPGSVAYNFGRKGVIVVPAEG 147
Query: 130 ADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
+D +L L+AGAE+V P E + V++ + T L ++GI +
Sbjct: 148 TTEDDVLTAVLEAGAEEVNAAPHGES----------FDVITDASQLVAARTALVDSGIDY 197
Query: 190 ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ + E +P +EVD + LI L + DDV V+++
Sbjct: 198 DSAD-VEFVPNLKVEVDADTARKVFRLIDALEDSDDVQNVFSN 239
>gi|417931868|ref|ZP_12575233.1| DNA-binding regulatory protein, YebC/PmpR family [Propionibacterium
acnes SK182B-JCVI]
gi|340775811|gb|EGR97864.1| DNA-binding regulatory protein, YebC/PmpR family [Propionibacterium
acnes SK182B-JCVI]
Length = 264
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 131/253 (51%), Gaps = 36/253 (14%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I K + R +K GG +PT N L ++KAK+ VP D + R +
Sbjct: 11 KHKKAAIDAKRGKLFARLIKNIEVAARLGGGDPTGNPTLYDAIQKAKKSSVPNDNITRAV 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR S +G +A + +YE YG GV+I++E LTD R+V+ VR V GG MAD GS
Sbjct: 71 KRGSGEGADAVNYETIMYEAYGPAGVAILIECLTDNRNRAVSDVRVAVTRNGGTMADGGS 130
Query: 113 VMFKFRRARVVNIKFT------------DADKDQLLDIALDAGAEDVIEPPVNEDDTDED 160
V F+R VV++ T + D+DQL++ +DA ED++ D
Sbjct: 131 VQRLFQRKGVVSVSKTYEVEEGRKTETREVDEDQLMEATIDAEPEDIV-----------D 179
Query: 161 RAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVD-DEAMELNKELIAK 219
E ++++S + D+ +++AGI +++ S P T VD D A +L K L A
Sbjct: 180 EGE-VFEIISDPNAVVDVRKAVQDAGIDYDSAEVS-FKPDFTQAVDLDGARKLYKILDA- 236
Query: 220 LLELDDVDAVYTD 232
L +LDDV V+++
Sbjct: 237 LEDLDDVQNVFSN 249
>gi|229491986|ref|ZP_04385803.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229321118|gb|EEN86922.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 253
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +PT N L ++KAK+ VP D +ER KR + E G
Sbjct: 24 RGKSFAKLIKNIEVAARTGGGDPTGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGG 83
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG +ADPGSV + F R V
Sbjct: 84 ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRTAMTRNGGNLADPGSVSYLFARKGV 143
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ +D +L LDAGAE+V D E +++VS + + + L
Sbjct: 144 VTLEKNGQSEDDVLMAVLDAGAEEVT-----------DLGE-TFEIVSEPQDLVAVRSAL 191
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ ++ + +D + +L+ L + DDV VYT+
Sbjct: 192 QEAGIDYDSAE-ADFRASVEVPLDVDGARKIFKLVDALEDSDDVQNVYTN 240
>gi|19704982|ref|NP_602477.1| hypothetical protein FN1661 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296329236|ref|ZP_06871737.1| glucose-1-phosphate adenylyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|33517054|sp|Q8RIE0.1|Y1661_FUSNN RecName: Full=Probable transcriptional regulatory protein FN1661
gi|19712888|gb|AAL93776.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296153592|gb|EFG94409.1| glucose-1-phosphate adenylyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 249
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGGDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ V+ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEMRMTFTRKDGNLGADGAVSWMFKKKGVITVKAEGIDADEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV EDD Y++V + + + L+ AG +E S ++
Sbjct: 156 ALEAGAEDVT-----EDDG-------YFEVTTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+E+ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVEITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|254490177|ref|ZP_05103368.1| conserved hypothetical protein TIGR01033 [Methylophaga thiooxidans
DMS010]
gi|224464663|gb|EEF80921.1| conserved hypothetical protein TIGR01033 [Methylophaga thiooxydans
DMS010]
Length = 249
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 117/216 (54%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GG +P SN L A ++KA ++ KD++ER KR + + + E++ YE YG G
Sbjct: 36 ARMGGSDPASNPRLRAAIDKALGNNMTKDVIERATKRGAGELEGVNYEEIRYEGYGPNGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ +TD R+VAAVR V GG M G V F F + ++++ +++ +++
Sbjct: 96 AIMVDCMTDNKNRTVAAVRNVFTKRGGNMGTDGCVAFLFNKKGIISLP-AGLEEETVMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED+ V DD D V +T D+Y + L EAG+ E+ + +
Sbjct: 155 ALEAGAEDI----VTNDDGSID-------VFTTPDDYAAVKDALDEAGLEAESSQVT-MH 202
Query: 199 PITTI--EVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT+ EVDD + +I ELDDV VY++
Sbjct: 203 PDTTVSLEVDDAKKAIG--MIEAFEELDDVQEVYSN 236
>gi|451949073|ref|YP_007469668.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfocapsa
sulfexigens DSM 10523]
gi|451908421|gb|AGF80015.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfocapsa
sulfexigens DSM 10523]
Length = 249
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 120/215 (55%), Gaps = 17/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
+ GG +P N L + + A+ ++PKD + R IK+ + E E + E +YE YG GGV+
Sbjct: 37 RMGGGDPDGNPRLRSAIVTARAENMPKDNITRAIKKGTGELEGEVYDEILYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE +TD R+VA +R GG + + G V + F + ++ + T ++ L+++A
Sbjct: 97 VLVECMTDNRNRTVADIRHYFAKSGGNLGESGCVAYMFDKKGMMLVDKTTISEEALMELA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGA+DV+E EDD Y+++V+ +++ + +L E G+ F + ++P
Sbjct: 157 IEAGADDVVE----EDD--------YFQIVTAPEDFDAVRDELEEGGVSF-AEASLTMVP 203
Query: 200 ITTIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
TTIEV +E A L K L+ + DDV V+ +
Sbjct: 204 QTTIEVTEEKPARALLK-LLDNIEGHDDVQNVHAN 237
>gi|403515367|ref|YP_006656187.1| hypothetical protein R0052_08060 [Lactobacillus helveticus R0052]
gi|403080805|gb|AFR22383.1| hypothetical protein R0052_08060 [Lactobacillus helveticus R0052]
Length = 242
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L V++KA+ ++PKD ++R IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRAIKKAEGGSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
+ VE LTD R+ + VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VFVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ DD +++ + + D+ L + G D +
Sbjct: 156 DVMDAGGDDL----QTSDDA--------FEIYTDPKQFADVRDALIKDGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E + L+ L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>gi|326803199|ref|YP_004321017.1| DNA-binding regulatory protein, YebC/PmpR family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650563|gb|AEA00746.1| DNA-binding regulatory protein, YebC/PmpR family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 243
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 21/233 (9%)
Query: 3 RKQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-G 61
++ + R+ Y+ VK+GGP+ +N L V++KAK ++PK +ER I + S G
Sbjct: 20 KRAKIFQKLSREIYMA-VKQGGPDADANPSLRMVMDKAKAANMPKTNIERAIDKGSNTAG 78
Query: 62 QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR 121
E + E YE YG G+++ VE LTD R++ VR + GG + + GSV + F R
Sbjct: 79 GEDYDEVTYEGYGPNGIAVFVETLTDNTNRTLTNVRTIFNRNGGSLGESGSVAYMFDRKG 138
Query: 122 VVNIKFTDADKDQ--LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
+ I+ D D D+ + A+DAGAED+ ++ +++ + ++++ +
Sbjct: 139 YLAIEREDLDVDEETMFMDAIDAGAEDL------------QTSDEVFEIYTEANDFGAVR 186
Query: 180 TKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
L E G T SEL +P T I++ D+ + LI KL + DDV VY
Sbjct: 187 DALEEKGYKLAT---SELTMVPKTMIDLPDDKKATFETLIEKLEDDDDVQNVY 236
>gi|237743343|ref|ZP_04573824.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|336419935|ref|ZP_08600185.1| hypothetical protein HMPREF0401_02205 [Fusobacterium sp. 11_3_2]
gi|422936127|ref|ZP_16966705.1| glucose-1-phosphate adenylyltransferase [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|229433122|gb|EEO43334.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|336162443|gb|EGN65409.1| hypothetical protein HMPREF0401_02205 [Fusobacterium sp. 11_3_2]
gi|339890870|gb|EGQ79934.1| glucose-1-phosphate adenylyltransferase [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
Length = 249
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGGDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ ++ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEIRMTFTRKDGNLGADGAVSWMFKKKGIITVKAEGIDADEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED V EDD Y++V + + + L+ AG +E S ++
Sbjct: 156 ALEAGAED-----VEEDDG-------YFEVTTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+E+ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVEITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|7339729|gb|AAF60954.1|AF104936_2 unknown [Riemerella anatipestifer]
gi|156081604|gb|ABU48615.1| P25 [Riemerella anatipestifer]
Length = 228
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P SN L ++ AK ++PKD VER IK+AS E + E YE YG GGV+
Sbjct: 16 VKAGGPDPDSNPALRRCIQNAKGANMPKDNVERAIKKASGADAENYEEITYEGYGQGGVA 75
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK--FTDADKDQLLD 137
VE T+ TR+VA VR + G + G + F F R + ++ + D ++
Sbjct: 76 FFVECTTNNSTRTVANVRAIFNKFDGNLGKNGELSFLFDRKGIFTLEKSLINMDWEEFEM 135
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
+D GAED+ D+DE V + +++ ++ KL E GI E N +
Sbjct: 136 EMIDGGAEDI--------DSDETEV----MVTTAFEDFGSLSHKLDELGI--EVKNAELQ 181
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P + V +E N +++ + E DDV VY +
Sbjct: 182 RIPNISKSVSEEQFIANMKMLQRFEEDDDVQNVYHN 217
>gi|328953688|ref|YP_004371022.1| hypothetical protein Desac_2010 [Desulfobacca acetoxidans DSM
11109]
gi|328454012|gb|AEB09841.1| UPF0082 protein yeeN [Desulfobacca acetoxidans DSM 11109]
Length = 250
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 18/214 (8%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK--GQEAFIEKVYEVYGYGGVSI 80
GG +P+ NT L A + AK ++PK+ ++R IK+ + + G AF E YE YG GV++
Sbjct: 39 GGSDPSGNTRLRAAIAAAKAENMPKENIDRAIKKGAGELEGANAFEEVFYEGYGPSGVAL 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+VE LTD R+V+ VR + GG M + G V + F + V+ +D+LL+ AL
Sbjct: 99 LVESLTDNKNRTVSEVRHLFSKYGGSMGEAGCVAWMFDKKGVIAFSRDAVSEDELLEAAL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AGAED+ E Y+V++ ++ + L E G +E ++ P
Sbjct: 159 EAGAEDL------------QVGESEYEVITDLASFEKVKNALEEQGFKWEVAE-IQMHPK 205
Query: 201 TTIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
TTI +++E A +L K L+ L +LDDV V+ +
Sbjct: 206 TTIRLEEEKSAQQLLK-LMEMLEDLDDVQHVFAN 238
>gi|445445754|ref|ZP_21443195.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-92]
gi|444760949|gb|ELW85377.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-92]
Length = 249
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-S 58
KQ RG Y+R + K GG +P SN L AV+EKA +++ +D + R I+R
Sbjct: 16 KQDASRGKVFTKYIREIVTAAKLGGADPASNPRLRAVVEKALSVNMTRDTINRAIQRGVG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTAGSVAYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++D+AL+AGAED+ V+ED+ V+++ + + +
Sbjct: 136 KRG--EITFDDVSLEDKIMDVALEAGAEDI---EVSEDE---------ILVITSPETFGE 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P E+ D+A ++ K LI L +LDDV VYT+
Sbjct: 182 VQDALAAAGL--KSDNAEVVMSPSNKAEITDIDQAKQVMK-LIDMLEDLDDVQNVYTN 236
>gi|407697056|ref|YP_006821844.1| hypothetical protein B5T_03234 [Alcanivorax dieselolei B5]
gi|407254394|gb|AFT71501.1| UPF0082 protein [Alcanivorax dieselolei B5]
Length = 243
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 118/216 (54%), Gaps = 15/216 (6%)
Query: 19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
+ + GG N L A ++KA ++ +D ++R IKR + A +E++ YE YG GG
Sbjct: 35 SARMGGGEINDNPRLRAAVDKALTNNMTRDTIDRAIKRGAGGDDSANMEEITYEGYGKGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++VE +TD + R+VA VR GG + GSV F F + + + D+++L++
Sbjct: 95 VAVLVETMTDNVNRTVAEVRHAFSKFGGNLGTSGSVAFLFTKRGEIFFE-PGVDEEKLME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD-NYTDITTKLREAGIPFETDNGSE 196
+AL+AGAEDV E N+D + + VV+ D ++ D+ L+ G+ D
Sbjct: 154 LALEAGAEDVEE---NDDGS--------FLVVTAPDRSFGDVVDALKAGGLE-PADAEVT 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ P T+ E+D + E +++ L +LDDV VYT+
Sbjct: 202 MHPSTSAEMDADTAETVGKMVDHLEDLDDVQNVYTN 237
>gi|224372670|ref|YP_002607042.1| hypothetical protein NAMH_0626 [Nautilia profundicola AmH]
gi|254806547|sp|B9L8T4.1|Y626_NAUPA RecName: Full=Probable transcriptional regulatory protein NAMH_0626
gi|223589581|gb|ACM93317.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 238
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 14/217 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEV 72
++ + ++GG NP +N L +E+AK +P ++R I +A+ + +V YE
Sbjct: 30 RAIMTAARQGGGNPDTNAALRLAVERAKADSMPMQNIQRAIDKATGNLDGVTLSEVSYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GGV+I+VE LTD R+VA +R K GG + GSV + F + +V + +D D
Sbjct: 90 YGPGGVAIMVECLTDNKNRTVAEIRHAFKKAGGSLGTSGSVAWMFEKKGIVVVNRSDKD- 148
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
D++++ A+++GAED+ E +NE E E + V+ +N I ++ E+ +
Sbjct: 149 DEVMETAIESGAEDIKE--LNEVLVIETAPEDFNNVLEAVNNIDGI--EILESNVQLVAT 204
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV 229
N S EVDDE E ++LI L ELDDV V
Sbjct: 205 NES--------EVDDETAEKVEKLIEVLEELDDVQNV 233
>gi|161507245|ref|YP_001577199.1| hypothetical protein lhv_0777 [Lactobacillus helveticus DPC 4571]
gi|260102544|ref|ZP_05752781.1| glucose-1-phosphate adenylyltransferase [Lactobacillus helveticus
DSM 20075]
gi|385814171|ref|YP_005850564.1| Glucose-1-phosphate adenylyl transferase [Lactobacillus helveticus
H10]
gi|172048213|sp|A8YUH0.1|Y777_LACH4 RecName: Full=Probable transcriptional regulatory protein lhv_0777
gi|160348234|gb|ABX26908.1| hypothetical protein lhv_0777 [Lactobacillus helveticus DPC 4571]
gi|260083638|gb|EEW67758.1| glucose-1-phosphate adenylyltransferase [Lactobacillus helveticus
DSM 20075]
gi|323466890|gb|ADX70577.1| Glucose-1-phosphate adenylyl transferase [Lactobacillus helveticus
H10]
Length = 242
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L V++KA+ ++PKD ++R IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRAIKKAEGGSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
+ VE LTD R+ + VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VFVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ DD +++ + + D+ L + G D +
Sbjct: 156 DVMDAGGDDL----QTSDDA--------FEIYTDPKQFADVRDALIKDGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E + L+ L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>gi|86740074|ref|YP_480474.1| hypothetical protein Francci3_1368 [Frankia sp. CcI3]
gi|119391260|sp|Q2JD97.1|Y1368_FRASC RecName: Full=Probable transcriptional regulatory protein
Francci3_1368
gi|86566936|gb|ABD10745.1| protein of unknown function DUF28 [Frankia sp. CcI3]
Length = 251
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 112/213 (52%), Gaps = 16/213 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK--GQEAFIEKVYEVYGYGGV 78
K GG +P N LA + KAK VP D +ER +KR S + G + + YE YG GGV
Sbjct: 37 KTGGGDPAGNPTLADAIAKAKSQSVPNDNIERAVKRGSGELAGGVNYEDITYEAYGPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+I+VE LTD R+ + VR + GG +ADPGSV + F R VV I+ T +D +L
Sbjct: 97 AILVECLTDNRNRAASDVRVAITRNGGTVADPGSVSYLFNRKGVVLIEKTAGLTEDDVLL 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E ++VVS + + + +AG+ + + S
Sbjct: 157 AVLDAGAEEV-------NDVGE-----AFEVVSEATDLHAVRVAATDAGLAVTSADIS-W 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
LP ++ ++ E +LI + +LDDV V+
Sbjct: 204 LPSVSVSLEAEPAAKVLKLIEAVEDLDDVQNVW 236
>gi|453070991|ref|ZP_21974218.1| hypothetical protein G418_20046 [Rhodococcus qingshengii BKS 20-40]
gi|259646921|sp|C0ZZ45.1|Y2922_RHOE4 RecName: Full=Probable transcriptional regulatory protein RER_29220
gi|226185526|dbj|BAH33630.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|452760074|gb|EME18417.1| hypothetical protein G418_20046 [Rhodococcus qingshengii BKS 20-40]
Length = 250
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +PT N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKSFAKLIKNIEVAARTGGGDPTGNPTLYDAIQKAKKTSVPNDNIERARKRGAGEEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV++++E LTD R+ VR + GG +ADPGSV + F R V
Sbjct: 81 ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRTAMTRNGGNLADPGSVSYLFARKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ +D +L LDAGAE+V D E +++VS + + + L
Sbjct: 141 VTLEKNGQSEDDVLMAVLDAGAEEVT-----------DLGE-TFEIVSEPQDLVAVRSAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ ++ + +D + +L+ L + DDV VYT+
Sbjct: 189 QEAGIDYDSAE-ADFRASVEVPLDVDGARKIFKLVDALEDSDDVQNVYTN 237
>gi|453364910|dbj|GAC79543.1| putative transcriptional regulatory protein [Gordonia malaquae NBRC
108250]
Length = 251
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERARKRGGGEEGGGADWQTIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I++E LTD R+ VR + GG MADPGSV + F R VV + D +D +L
Sbjct: 96 VAILIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFARKGVVTLDKGDQSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V D E+ +++VS + + T L+EAGI +E+ +
Sbjct: 156 AVLDAGAEEVT-----------DLGEQ-FEIVSEPTDLIAVRTALQEAGIDYESAE-PDF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD + +LI L + DDV VY++
Sbjct: 203 RASVEVPVDADGARKMFKLIDALEDSDDVQNVYSN 237
>gi|422295822|gb|EKU23121.1| hypothetical protein NGA_0690700 [Nannochloropsis gaditana CCMP526]
Length = 317
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 17/222 (7%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+G+K + VK GGP+P N LA ++ +AK VP D V+R I+R S + + E VY
Sbjct: 97 YGKKLVMA-VKAGGPDPEVNRALAVMIREAKAQGVPSDNVQRAIQRGSNANEADYKEAVY 155
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E YGYGG +++ LTD R+ + V+K K+A GSV F F R +++
Sbjct: 156 EAYGYGGAGLIINCLTDNTNRAKTEISNVIKKTDVKLATSGSVAFNFDRKGRIDLAGI-V 214
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
++D +L+ AL+A EDV + VNE++ V S + +++ LRE +
Sbjct: 215 EEDAVLEAALEADVEDV-DTRVNEEE----------GVTSVLVDPASVSS-LREVFLGKG 262
Query: 191 TDNGSELL---PITTIEVDDEAMELNKELIAKLLELDDVDAV 229
+ + L+ P ++ DE E N +I L ELDDVD+V
Sbjct: 263 REIKASLMVNVPKLLMDCSDEDFEGNMSVIEALEELDDVDSV 304
>gi|373107923|ref|ZP_09522215.1| YebC/PmpR family DNA-binding regulatory protein [Stomatobaculum
longum]
gi|371650508|gb|EHO15968.1| YebC/PmpR family DNA-binding regulatory protein [Stomatobaculum
longum]
Length = 243
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 96/174 (55%), Gaps = 17/174 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
VK+GGP+P +N+ L V+ KAK +VP D + IK+A+ G ++ + + VYE YG G
Sbjct: 36 VKEGGPDPANNSKLRDVIAKAKANNVPNDTINNGIKKAA-GGLDSVNYEQNVYEGYGPSG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQL 135
V+I+VE LTD R+ A VR GG + PG V F F R +++ + + D D+L
Sbjct: 95 VAIIVETLTDNKNRTAANVRAAFSKGGGNVGTPGCVSFMFDRKGQIIIDKEECEMDPDEL 154
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
+ ALDAGAED + NED Y+V++ + ++ + + GIP
Sbjct: 155 MMFALDAGAEDFAD---NEDS---------YEVLTDPEQFSAVREAFEQKGIPM 196
>gi|120435849|ref|YP_861535.1| hypothetical protein GFO_1495 [Gramella forsetii KT0803]
gi|117577999|emb|CAL66468.1| protein containing DUF28 [Gramella forsetii KT0803]
Length = 251
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P +N L AV++ AK +++PKD VER IKRAS
Sbjct: 22 MKRWSAMSKAFTRIGKDIVMAVKEGGPDPDTNAKLRAVIQNAKSVNMPKDNVERAIKRAS 81
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + ++E Y G++++VE TD R+VA +R C G + GSV F F
Sbjct: 82 DKSQGDYKIVLFEGYAPHGIAVLVETATDNNNRTVANIRSHFNKCDGNLGTSGSVEFMFD 141
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D +++ +D GAE+V E DE+ Y + + + I
Sbjct: 142 HTCNFRIPSEGLDPEEMELELIDFGAEEVFE--------DEEGIHIY----APFEYFGAI 189
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L I +G E +P T +++E ++L+ KL E DDV VY
Sbjct: 190 QKELENREIEI-VSSGFERIPQVTKSLNEEQTAEVEKLLEKLEEDDDVQNVY 240
>gi|303230191|ref|ZP_07316959.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica ACS-134-V-Col7a]
gi|429760264|ref|ZP_19292745.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica KON]
gi|302515117|gb|EFL57091.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica ACS-134-V-Col7a]
gi|429177765|gb|EKY19070.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella
atypica KON]
Length = 245
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 23/201 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-----QEAFIEKVYEVYG 74
+ GG +PT N L L+KA+E ++PKD NI+RA +KG A+ E VYE YG
Sbjct: 36 ARMGGADPTGNMRLKLALQKARENNIPKD----NIQRAIDKGVGATDMNAYEEIVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ 134
GV++ VEV+TD R+ A VR GG + + G V + F+ V I D+D+
Sbjct: 92 PAGVAVTVEVMTDNRNRAAADVRHAFSKQGGNLGESGCVGWMFKSKGVFVIDKEGHDEDE 151
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
L +ALDAGAED+ EDD +++ +T +++ + L +AGI E
Sbjct: 152 LTLLALDAGAEDLKA----EDDV--------FEIYTTPEDFDAVEQALADAGIETEVAKI 199
Query: 195 SELLPITTIEVD-DEAMELNK 214
+ ++P TTIE+ D+A ++ K
Sbjct: 200 T-MIPDTTIELSGDDAEKMQK 219
>gi|404398486|ref|ZP_10990070.1| hypothetical protein PfusU_01962 [Pseudomonas fuscovaginae UPB0736]
Length = 248
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
++GG +P SN L L+KA ++ +DI++R + R A + +E YE YG GGV
Sbjct: 36 ARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARGAGNADTDDMVELSYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+++VE +TD R+ AAVR CGG + GSV + F R I F D+D L++
Sbjct: 96 AVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYLFERKG--QISFAPGIDEDSLME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
A++A A+DV+ NED + V ++ + + L +G D +
Sbjct: 154 AAMEADADDVV---TNEDGS--------IDVFTSFAGFYAVRNALEASGFK-AGDAEIVM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP T+ E+D + E +LI L +LDDV VY++
Sbjct: 202 LPTTSAELDLDGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|336401543|ref|ZP_08582305.1| hypothetical protein HMPREF0404_01596 [Fusobacterium sp. 21_1A]
gi|423137525|ref|ZP_17125168.1| UPF0082 protein [Fusobacterium nucleatum subsp. animalis F0419]
gi|336160644|gb|EGN63676.1| hypothetical protein HMPREF0404_01596 [Fusobacterium sp. 21_1A]
gi|371959907|gb|EHO77578.1| UPF0082 protein [Fusobacterium nucleatum subsp. animalis F0419]
Length = 249
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGGDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ ++ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEIRMTFTRKDGNLGADGAVSWMFKKKGIITVKSEGIDADEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED V EDD Y++V + + + L+ AG +E S ++
Sbjct: 156 ALEAGAED-----VEEDDG-------YFEVTTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+E+ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVEITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|203283954|ref|YP_002221694.1| hypothetical protein BDU_30 [Borrelia duttonii Ly]
gi|386859255|ref|YP_006271961.1| hypothetical protein Q7M_30 [Borrelia crocidurae str. Achema]
gi|226734020|sp|B5RLN2.1|Y030_BORDL RecName: Full=Probable transcriptional regulatory protein BDU_30
gi|201083397|gb|ACH92988.1| uncharacterized conserved protein [Borrelia duttonii Ly]
gi|384934136|gb|AFI30809.1| UPF0082 protein [Borrelia crocidurae str. Achema]
Length = 243
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 113/215 (52%), Gaps = 19/215 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA--SEKGQEAFIEKVYEVYGYGGV 78
+ GG + SN L + KA+ ++PKD +E+ IK+ G E F E YE Y GV
Sbjct: 37 RMGGGDIDSNPRLRLAVNKARVANMPKDNIEKAIKKGIGDNMGSEYF-ELTYEAYALYGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++++ LTD R+ + VR V+ GG + PGSV + F + +++ +D+++++
Sbjct: 96 ALIIKCLTDNKNRTASEVRSVLSKSGGSLGAPGSVSYMFHKKGLISYNLDKYHEDEIIEL 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
AL+AGAED+ +V++++DN+ +++ LR FE D L
Sbjct: 156 ALEAGAEDIYSEGSQ------------VEVITSADNFESVSSILR---TKFEEDIAEVAL 200
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P + + +D E M+ +I KL + DDV VY +
Sbjct: 201 VPESKVALDKEQMDKVLAIIEKLEDCDDVQEVYHN 235
>gi|365158004|ref|ZP_09354247.1| UPF0082 protein [Bacillus smithii 7_3_47FAA]
gi|363622183|gb|EHL73354.1| UPF0082 protein [Bacillus smithii 7_3_47FAA]
Length = 258
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 116/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-SEKGQEAFIEKVYEVYGYGGV 78
K+G P+P +N L V+EKAK ++P D ++R I++A + E + E VYE YG GGV
Sbjct: 52 AKRGLPDPDANPALRLVVEKAKAANMPNDNIKRAIEKARGNQNGENYEEIVYEGYGPGGV 111
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD--ADKDQLL 136
+I+V LTD R+ + VR GG + + G V + F R + I+ D D+D +L
Sbjct: 112 AIMVTCLTDNKNRTASNVRMAFSKNGGNLGETGCVSYLFDRKGYLVIEREDLNLDEDDML 171
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
A++AGAE++ + +E +++ + +N+ ++ L +AG F T +
Sbjct: 172 LQAIEAGAEEM------------ETSEEAFEIYTDPENFMEVKENLEKAGFAFATAEIT- 218
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T +DDE ++L+ L + DDV +Y +
Sbjct: 219 MVPQTYTALDDEQSAKMEKLLDMLEDNDDVQEIYHN 254
>gi|295092959|emb|CBK82050.1| conserved hypothetical protein TIGR01033 [Coprococcus sp. ART55/1]
Length = 249
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 115/217 (52%), Gaps = 17/217 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
VK+GG NP +N+ L V+ KAK ++P D ++R I+RA+ ++ YE YG G
Sbjct: 36 VKEGGANPENNSKLRDVIAKAKANNMPNDTIKRGIERAAGDANSVNYVVNTYEGYGPNGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + G V MF + ++ + D D D L+
Sbjct: 96 AIIVDTLTDNKNRTAANVRNCFTKGGGNVGTTGCVSYMFDHKGQIIIAKEDCDIDADDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ALDAGAED +DED + Y++++ ++++ + L + GI +
Sbjct: 156 MMALDAGAEDF---------SDEDDS---YEIITAPEDFSQVRESLEKEGIKM-AEAELT 202
Query: 197 LLPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
++P +++DD E ++ +I L E DDV AVY +
Sbjct: 203 MIPQNYVDIDDPEVVKKFTRIIDMLEEDDDVQAVYHN 239
>gi|366163879|ref|ZP_09463634.1| hypothetical protein AcelC_09433 [Acetivibrio cellulolyticus CD2]
Length = 242
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 18/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
V++GGP P SN+ L V+ KAK ++P D + R IK+A+ + ++ E VYE YG GGV
Sbjct: 36 VRQGGPEPESNSKLKDVIAKAKAANMPNDNIIRCIKKAAGDVDSASYEEIVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
+++VE +TD R+ VR GG + G V F F + V+ I K +D L+
Sbjct: 96 AVIVEAMTDNRNRTAGDVRHFFDKFGGNLGTTGCVSFMFDKKGVILIEKDGKIKEDDLMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETDNGSE 196
AL+ GAED DED Y++ ++ D ++ + L + G F E D E
Sbjct: 156 EALEVGAEDFT--------ADED----VYEITTSPDEFSAVREALEKKGYDFVEAD--VE 201
Query: 197 LLPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
++P T ++ D + +E LI L +LDDV VY +
Sbjct: 202 MVPQTMTKLTDPKQIEFMDRLIEHLEDLDDVQNVYHN 238
>gi|150024925|ref|YP_001295751.1| hypothetical protein FP0835 [Flavobacterium psychrophilum JIP02/86]
gi|166235095|sp|A6GXW2.1|Y835_FLAPJ RecName: Full=Probable transcriptional regulatory protein FP0835
gi|149771466|emb|CAL42935.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 236
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGPNP +N+ L AV++ +K +++PK+ VER IK+A+
Sbjct: 13 MKRWSAMAKAFTRIGKDIVMAVKEGGPNPEANSRLRAVIQNSKAVNMPKENVERAIKKAT 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K + E ++E Y G++I++E +D R+VA +R C G M GSV F F
Sbjct: 73 DKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGTMGTQGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V E DED Y S + I
Sbjct: 133 HTCNFRIPANGMDPEELELELIDFGAEEVFE--------DEDGILIYAPFGS----FGTI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L GI +G E +P T E+ + + ++LI K+ E +DV VY
Sbjct: 181 QKELETRGIEI-LSSGFERIPQITKELTEAQIADVEKLIEKIEEDEDVMNVY 231
>gi|162319775|ref|YP_378486.2| hypothetical protein Cag_0165 [Chlorobium chlorochromatii CaD3]
gi|118574097|sp|Q3AU82.2|Y165_CHLCH RecName: Full=Probable transcriptional regulatory protein Cag_0165
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
K GG +PT N L ++ A+ +P D ++R IK+ + E ++ E YE YG G+
Sbjct: 36 AKMGGGDPTGNPRLRLAIDTARSNSMPMDNIQRAIKKGTGELDGVSWDEITYEGYGPAGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E TD R+VA +R ++ G + + GSV + F+R +++ + ++QL+++
Sbjct: 96 ALIIETATDNRNRTVADLRHIMSRNNGSLGESGSVAWMFQRKGSLDVPHSAVSEEQLMEL 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAG ED +++DD E Y+ V++ + L EAGI +E +L+
Sbjct: 156 LLDAGLED-----LDQDD------ENYFTVITDIKDLESAKKALDEAGIAYENAK-IDLI 203
Query: 199 PITTIEVD-DEAMELNKELIAKLLELDDVDAVYTD 232
P IE+D D+A ++ K LI L DDV AVY++
Sbjct: 204 PDNYIELDADDAAKVMK-LIDALESNDDVQAVYSN 237
>gi|163785080|ref|ZP_02179796.1| hypothetical protein HG1285_07991 [Hydrogenivirga sp. 128-5-R1-1]
gi|159879653|gb|EDP73441.1| hypothetical protein HG1285_07991 [Hydrogenivirga sp. 128-5-R1-1]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 117/217 (53%), Gaps = 18/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
++GG +P N L +EKAKE ++P + +ER IKR + + + E++ YE YG GV
Sbjct: 36 ARQGGGDPEFNPRLRIAIEKAKEHNMPAENIERAIKRGTGELEGVNYEEITYEGYGPEGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE +TD R+ +R + GG + G V F F V+ + + ++++ +
Sbjct: 96 AVIVECVTDNRNRTTGEIRHLFSKHGGNLGSSGCVSFLFEDKGVILVPKENISEEEIFEK 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL- 197
A++AGAEDVI TD+ E YY++ + ++ + L + G+ E +EL
Sbjct: 156 AIEAGAEDVI--------TDD---ENYYEIRTAPEDLYSVKEALEKEGVSIEK---AELT 201
Query: 198 -LPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
+P TT+E+ D E E +L+ L E DDV VY++
Sbjct: 202 KIPTTTVEIKDSETAEKLMKLLDALEEQDDVQKVYSN 238
>gi|260062494|ref|YP_003195574.1| hypothetical protein RB2501_12914 [Robiginitalea biformata
HTCC2501]
gi|88784059|gb|EAR15229.1| hypothetical protein RB2501_12914 [Robiginitalea biformata
HTCC2501]
Length = 236
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P +N+ L AV++ AK +++PKD +ER IKRA+
Sbjct: 13 MKRWAAMSKAFTRIGKDIVMAVKEGGPDPDANSRLRAVIQNAKAVNMPKDNIERAIKRAT 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K Q + E ++E Y G++I++E TD TR+VA +R C G + GSV F F
Sbjct: 73 DKSQGDYKEVLFEGYAPHGIAILIETATDNNTRTVANIRSYFNKCNGSLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V V++D + + +++ I
Sbjct: 133 HTCNFRIPAEGIDPEELELDMIDFGAEEVF---VDDDGI---------LIYAPFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L I +G E +P + E+ E E ++L+ + E DDV VY
Sbjct: 181 QKELESRDIEI-LSSGFERIPQVSKELSAEEAEDVEKLLEMIEEDDDVQNVY 231
>gi|77460631|ref|YP_350138.1| hypothetical protein Pfl01_4410 [Pseudomonas fluorescens Pf0-1]
gi|398962764|ref|ZP_10679363.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM30]
gi|424924553|ref|ZP_18347914.1| hypothetical protein I1A_004028 [Pseudomonas fluorescens R124]
gi|119392002|sp|Q3K7V7.1|Y4410_PSEPF RecName: Full=Probable transcriptional regulatory protein
Pfl01_4410
gi|77384634|gb|ABA76147.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
gi|398150598|gb|EJM39184.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM30]
gi|404305713|gb|EJZ59675.1| hypothetical protein I1A_004028 [Pseudomonas fluorescens R124]
Length = 248
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGATEADNVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L + AL+A A+DV+ +ED + V ++ ++
Sbjct: 134 FERKGQISFA-PGVDEDALTEAALEADADDVVS---HEDGS--------IDVFTSFTSFY 181
Query: 177 DITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG F+ D+ ++ P T+ E+D E E +LI L +LDDV VY++
Sbjct: 182 AVRNALEAAG--FKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|15606702|ref|NP_214082.1| hypothetical protein aq_1575 [Aquifex aeolicus VF5]
gi|6226456|sp|O67517.1|Y1575_AQUAE RecName: Full=Probable transcriptional regulatory protein aq_1575
gi|2983942|gb|AAC07491.1| hypothetical protein aq_1575 [Aquifex aeolicus VF5]
Length = 249
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 112/213 (52%), Gaps = 17/213 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIV 81
GGPNP N L +E+AK+ ++P + +ER IK+ A E E F E +YE Y GGV+++
Sbjct: 39 GGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGVAVM 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
V TD R+ + VR V GG + G V + F R + + + +++LL+ A++
Sbjct: 99 VLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIE 158
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
GAEDV +P E + + + + ++ L + G+P E + PI+
Sbjct: 159 VGAEDV-QP-----------GEEVHIIYTVPEELYEVKENLEKLGVPIEKAQIT-WKPIS 205
Query: 202 TIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
T++++DE A ++ K L+ L ELDDV V +
Sbjct: 206 TVQINDEETAQKVIK-LLNALEELDDVQQVIAN 237
>gi|153853240|ref|ZP_01994649.1| hypothetical protein DORLON_00634 [Dorea longicatena DSM 13814]
gi|149754026|gb|EDM63957.1| DNA-binding regulatory protein, YebC/PmpR family [Dorea longicatena
DSM 13814]
Length = 243
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 108/192 (56%), Gaps = 17/192 (8%)
Query: 20 VKKGGPN-PTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG + P++N+ L V+ KAK ++P D +ERNIKRAS A E + YE YG G
Sbjct: 36 VKEGGSSDPSNNSRLRDVIAKAKSNNMPNDTIERNIKRASGDMSAANYEHITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQL 135
+I+VE LTD R+ + V+ G + PG V F F + V++ + + D D+L
Sbjct: 96 TAIIVETLTDNKNRTASNVKNAFTKGSGNVGTPGCVSFMFDKKGQIVIDKEEYEGDADEL 155
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
+ LDAGAED +E E+D+ ++V++ D+++ + + EAGIP + +
Sbjct: 156 MMQVLDAGAEDFVE----EEDS--------FEVLTDPDDFSAVRLAMEEAGIPMVSAEVT 203
Query: 196 ELLPITTIEVDD 207
++P T +E+ D
Sbjct: 204 -MIPQTYVELTD 214
>gi|78170347|gb|ABB27443.1| Protein of unknown function DUF28 [Chlorobium chlorochromatii CaD3]
Length = 262
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 119/215 (55%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
K GG +PT N L ++ A+ +P D ++R IK+ + E ++ E YE YG G+
Sbjct: 48 AKMGGGDPTGNPRLRLAIDTARSNSMPMDNIQRAIKKGTGELDGVSWDEITYEGYGPAGI 107
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E TD R+VA +R ++ G + + GSV + F+R +++ + ++QL+++
Sbjct: 108 ALIIETATDNRNRTVADLRHIMSRNNGSLGESGSVAWMFQRKGSLDVPHSAVSEEQLMEL 167
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAG ED +++DD E Y+ V++ + L EAGI +E + +L+
Sbjct: 168 LLDAGLED-----LDQDD------ENYFTVITDIKDLESAKKALDEAGIAYE-NAKIDLI 215
Query: 199 PITTIEVD-DEAMELNKELIAKLLELDDVDAVYTD 232
P IE+D D+A ++ K LI L DDV AVY++
Sbjct: 216 PDNYIELDADDAAKVMK-LIDALESNDDVQAVYSN 249
>gi|49474670|ref|YP_032712.1| hypothetical protein BQ11790 [Bartonella quintana str. Toulouse]
gi|67462041|sp|Q6FYQ2.1|Y1179_BARQU RecName: Full=Probable transcriptional regulatory protein BQ11790
gi|49240174|emb|CAF26638.1| hypothetical protein BQ11790 [Bartonella quintana str. Toulouse]
Length = 248
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERAIKKASGNDVEHYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + K D ++D A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKSGGALGETGSVSFMFHRIGEIIYKPAAGTADSIMDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV E + + +N ++ +K+ EA + E ++ +
Sbjct: 156 IEAGAEDV------------QSEETGHSITCAFENLGEV-SKMLEAKLG-EAESIKTVWK 201
Query: 200 ITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 232
TT+ DE L+ LI+ L E DDV VY +
Sbjct: 202 ATTLAPVDEEKALSILRLISTLEEDDDVQNVYAN 235
>gi|374613041|ref|ZP_09685813.1| protein of unknown function DUF28 [Mycobacterium tusciae JS617]
gi|373546612|gb|EHP73369.1| protein of unknown function DUF28 [Mycobacterium tusciae JS617]
Length = 251
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++NV + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKNFAKLVKNVEVAARVGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ YE YG GV+++VE LTD R+ + VR + GG MADPGSV + F R +
Sbjct: 81 ADYQNITYEGYGPNGVAVLVECLTDNRNRAASEVRIAMTRNGGNMADPGSVAYLFSRKGL 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V + +D +L L+AGAE++ +D D+ ++++ + + T L
Sbjct: 141 VTLMKNGLTEDDVLTAVLEAGAEEI-------NDLDDS-----FEIICEPTDLVAVRTAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++AGI +E+ S T+ VD + +L+ L + DDV VYT+
Sbjct: 189 QDAGIDYESAEAS-FQSSVTVPVDLDGARKVLKLVDALEDSDDVQDVYTN 237
>gi|385829803|ref|YP_005867616.1| hypothetical protein CVCAS_0214 [Lactococcus lactis subsp. lactis
CV56]
gi|418037139|ref|ZP_12675528.1| hypothetical protein LLCRE1631_00335 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|326405811|gb|ADZ62882.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis
CV56]
gi|354695018|gb|EHE94646.1| hypothetical protein LLCRE1631_00335 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 238
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K+G P+P SN+ L V+E+AK+ VPK ++++ I +A G E F++ YE +G G +
Sbjct: 35 KQGEPDPESNSSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMV 94
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+ E LT + R++A VR GG + G+V + F V I F D D + +I L
Sbjct: 95 IAETLTSNVNRTIANVRTTFHKNGGNIGAAGAVSYMFDNTGV--IVFEGTDPDHIFEILL 152
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVST--SDNYTDITTKLREAGIPFETDNGSELL 198
DA E D + E VV T +D + I L+EAGI + E++
Sbjct: 153 DA-----------EVDVHDVTEEEGNIVVYTEPTDLHKGIAA-LKEAGITEFSTTELEMI 200
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + +E+ E +E+ + LI L + DDV VY +
Sbjct: 201 PQSEVELSPEDLEIFEGLIDALEDDDDVQKVYHN 234
>gi|254383615|ref|ZP_04998965.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194342510|gb|EDX23476.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 37 RMGGADIDGNPTLFDAIQKAKKSSVPNKNIDSAVKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L+
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVLLPKGELSEDDVLET 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAE+V +D E ++++S + + + T L+EAGI +++ + S L
Sbjct: 157 VLEAGAEEV-------NDLGES-----FEIISEATDMVAVRTALQEAGIDYDSAD-SNFL 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|410942993|ref|ZP_11374734.1| hypothetical protein GfraN1_01055 [Gluconobacter frateurii NBRC
101659]
Length = 249
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q R LR + + G P+P SN L A + A+E ++PKD VER I
Sbjct: 11 MHRKGAQDAKRAKQFAKILREITVAARSGLPDPASNPRLRAAITAAREANMPKDNVERAI 70
Query: 55 KRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
K+AS G E ++E YE YG GV+I+VE LTD R+ VR GG + + SV
Sbjct: 71 KKASGAAGGEDYVEVRYEGYGPAGVAIIVEGLTDNRNRTAGEVRAAFSKHGGSLGESNSV 130
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F+R VV A +D++L+ A++AGA++ + E +++ +
Sbjct: 131 SFMFQRLGVVTYPVDAASEDEMLEAAIEAGADNAV------------LTEEGHEITCEME 178
Query: 174 NYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
N+ + L F ++L P ++ +D+E +LI L + DDV AVY
Sbjct: 179 NFFAVRDALESR---FGEPQSAKLDWRPENSVSLDEEKARTVLKLIDVLEDNDDVQAVYA 235
Query: 232 D 232
+
Sbjct: 236 N 236
>gi|330811395|ref|YP_004355857.1| hypothetical protein PSEBR_a4443 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423698954|ref|ZP_17673444.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens Q8r1-96]
gi|327379503|gb|AEA70853.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|387996880|gb|EIK58210.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens Q8r1-96]
Length = 248
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGATEADNVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 175
F R I F D+D L + AL+A A+DV+ +ED + + V ++ ++
Sbjct: 134 FERKG--QISFAPGLDEDALTEAALEADADDVVS---HEDGS--------FDVFTSFASF 180
Query: 176 TDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG D + P T+ E+D E E +LI L +LDDV VY++
Sbjct: 181 YAVRNALEAAGFK-PADAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|418737147|ref|ZP_13293545.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|410747306|gb|EKR00212.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
Length = 249
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 116/213 (54%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER IK+ + + + E+ +YE +G G++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGELEGVVYEECLYECFGPAGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+DIA
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDIA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE + Y+V++T D+Y + L E G+ E +
Sbjct: 157 VGEGAEDVI----NEGEV--------YRVITTPDDYESVLHALNEKGLKSEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ D E E +LI +L DDV +V ++
Sbjct: 205 VSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|34763880|ref|ZP_00144784.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|421144841|ref|ZP_15604745.1| hypothetical protein A447_03163 [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|27886343|gb|EAA23614.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|395488733|gb|EJG09584.1| hypothetical protein A447_03163 [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 249
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGSDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ ++ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEMRMTFTRKDGNLGADGAVSWMFKKKGIITVKAEGIDADEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED + EDD Y++V + + + L+ AG +E S ++
Sbjct: 156 ALEAGAED-----ITEDDG-------YFEVTTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+E+ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVEITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|393765056|ref|ZP_10353649.1| hypothetical protein WYO_0538 [Methylobacterium sp. GXF4]
gi|392729480|gb|EIZ86752.1| hypothetical protein WYO_0538 [Methylobacterium sp. GXF4]
Length = 248
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A+ E + + YE YG GG +
Sbjct: 36 AKLGTPDPAMNPRLRAAIIAARAENMPKDNIERAIKKAAGAEGENYEDIRYEGYGPGGAA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE TD R+ + VR GG +A+ G+V F F R V+ + AD D +L+ A
Sbjct: 96 LIVEAQTDNRNRTASDVRSAFTKSGGSLAETGAVAFMFDRVGVIGFPASVADADTMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGA+DV +E ++VV D+Y ++ L EA T G
Sbjct: 156 IEAGADDV------------SSSEEGHEVVCAQDSYGEVAKAL-EARFGEPTRTGLIWKA 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TI+VDDE E L+ + + DDV VY +
Sbjct: 203 QNTIDVDDETGEKLIRLVEVIEDQDDVQHVYVN 235
>gi|227513143|ref|ZP_03943192.1| protein of hypothetical function DUF28 [Lactobacillus buchneri ATCC
11577]
gi|227083718|gb|EEI19030.1| protein of hypothetical function DUF28 [Lactobacillus buchneri ATCC
11577]
Length = 244
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P +N L V+EKA+ ++PKD V+R I +AS G F E YE YG GG +
Sbjct: 36 AKAGDPDPENNPQLRLVMEKARAANMPKDNVQRAIDKASGLGGAKFEEITYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK--DQLLD 137
I+V LTD R+ AA+R GG + GSV + F R + + DK D +L
Sbjct: 96 IMVSALTDNKNRTAAAIRSAFTHHGGSLGASGSVSYMFDRKGYIEVLRDGLDKSEDDMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ TD + +++ + + + +L++ G +T +
Sbjct: 156 DALDAGADDMKT-------TDSE-----FQIFTDPSSLAAVRDELQKKGYDLDTAE-VRM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P TT EV + + LI +L DDV VY
Sbjct: 203 FPETTTEVPGDKISQYSGLIDELENNDDVQDVY 235
>gi|88811439|ref|ZP_01126694.1| hypothetical protein NB231_11909 [Nitrococcus mobilis Nb-231]
gi|88791328|gb|EAR22440.1| hypothetical protein NB231_11909 [Nitrococcus mobilis Nb-231]
Length = 247
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 113/211 (53%), Gaps = 14/211 (6%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGVSIV 81
GGPNP N L +++A +++PKD +ER IKR + + E++ E +E YG GV+I+
Sbjct: 39 GGPNPDLNPRLRLAIDRALSVNMPKDNIERAIKRGAGTDELESYEEPRFEGYGPAGVAIM 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
+ +TD R+V+ VR GG + G V + FRR V + +D+D++L++AL+
Sbjct: 99 ADCMTDNRNRTVSEVRFAFSKYGGNLGTDGCVAYLFRRQGVF-VFPPHSDEDRILEVALE 157
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAED+ N DD +V+S+ ++Y + L A + D + P T
Sbjct: 158 AGAEDI----ANSDDGS-------VEVLSSPEHYDAVKQALELADL-HPADAEITMRPET 205
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ + E ++I L +LDDV VYT+
Sbjct: 206 TVVLGAEEGRKVLKIIEHLEDLDDVQHVYTN 236
>gi|237742690|ref|ZP_04573171.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|294784785|ref|ZP_06750073.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
gi|229430338|gb|EEO40550.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|294486499|gb|EFG33861.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
Length = 249
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGSDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMKYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ ++ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEMRMTFTRKDGNLGADGAVSWMFKKKGIITVKAEGIDADEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED + EDD Y++V + + + L+ AG +E S ++
Sbjct: 156 ALEAGAED-----ITEDDG-------YFEVTTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+E+ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVEITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|227510215|ref|ZP_03940264.1| protein of hypothetical function DUF28 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227189867|gb|EEI69934.1| protein of hypothetical function DUF28 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 244
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P +N L V+EKA+ ++PKD V+R I +AS G F E YE YG GG +
Sbjct: 36 AKAGDPDPENNPQLRLVMEKARAANMPKDNVQRAIDKASGLGGAKFEEITYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK--DQLLD 137
I+V LTD R+ AA+R GG + GSV + F R + + DK D +L
Sbjct: 96 IMVSALTDNKNRTAAAIRSAFTHHGGSLGASGSVSYMFDRKGYIEVLRDGLDKSEDDMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ TD + +++ + + + +L++ G +T +
Sbjct: 156 DALDAGADDM-------KTTDSE-----FQIFTDPSSLAAVRDELQKKGYDLDTAE-VRM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P TT EV + + LI +L DDV VY
Sbjct: 203 FPETTTEVPGDKISQYSGLIDELENNDDVQDVY 235
>gi|58040111|ref|YP_192075.1| hypothetical protein GOX1679 [Gluconobacter oxydans 621H]
gi|67462014|sp|Q5FQC7.1|Y1679_GLUOX RecName: Full=Probable transcriptional regulatory protein GOX1679
gi|58002525|gb|AAW61419.1| Nucleotidyltransferase [Gluconobacter oxydans 621H]
Length = 249
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 24/241 (9%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q R LR + + G P+PTSN L A + A+E+++PKD VER I
Sbjct: 11 MHRKGAQDAKRAKQFAKVLREITVATRSGLPDPTSNPRLRAAISMAREVNMPKDNVERAI 70
Query: 55 KRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
K+AS G + ++E YE YG GV+I+VE LTD R+ VR GG + + SV
Sbjct: 71 KKASGAAGGDDYVEVRYEGYGPAGVAIIVEGLTDNRNRTAGEVRAAFSKHGGSLGETNSV 130
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F+R V++ A +D++L+ A++AGA+ N + T+E ++V +
Sbjct: 131 SFMFQRLGVISYPLDVASEDEMLEAAIEAGAD-------NAETTEEG-----HEVTCAME 178
Query: 174 NYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
N+ + L F ++L P ++ +D++ +LI L + DD+ AVY
Sbjct: 179 NFFAVRDALESR---FGEPQSAKLDWRPENSVTLDEDKARSVMKLIDVLEDSDDIQAVYA 235
Query: 232 D 232
+
Sbjct: 236 N 236
>gi|421094068|ref|ZP_15554789.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. 200801926]
gi|410363209|gb|EKP14241.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. 200801926]
gi|456886713|gb|EMF97839.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
borgpetersenii str. 200701203]
Length = 249
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 116/213 (54%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER IK+ + + + E+ +YE +G G++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGELEGVVYEECLYECFGPAGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDLA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE + Y+V++T D+Y + L E G+ E +
Sbjct: 157 VGGGAEDVI----NEGEV--------YRVITTPDDYESVLHALNEKGLKSEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ D E E +LI +L DDV +V ++
Sbjct: 205 VSSEIADKEVAEKVMKLIEQLDGHDDVTSVTSN 237
>gi|398788523|ref|ZP_10550675.1| hypothetical protein SU9_29931 [Streptomyces auratus AGR0001]
gi|396992084|gb|EJJ03201.1| hypothetical protein SU9_29931 [Streptomyces auratus AGR0001]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 115/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RTGGADPDGNPTLFDAIQKAKKSSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELSEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+E+GI +++ + + +
Sbjct: 157 VLDAGAEEV-------NDLGE-----TFEVLSEATDLVAVRTALQESGIDYDSAD-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+++E +LI L + DDV V+ +
Sbjct: 204 PTMQVELEEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|149278973|ref|ZP_01885107.1| hypothetical protein PBAL39_03809 [Pedobacter sp. BAL39]
gi|149230252|gb|EDM35637.1| hypothetical protein PBAL39_03809 [Pedobacter sp. BAL39]
Length = 241
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 19/240 (7%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK+ + W + K + VK GGP+P +N+ L ++ AK +++PKD V+
Sbjct: 8 RKERKFKRWAKMAVQFTRIGKEIVMAVKDGGPSPDTNSRLRTAIQNAKAVNMPKDRVDAA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRAS K + + E VYE Y GV+I++E TD R+VA VR GG + GS+
Sbjct: 68 IKRASNKDENGYEEYVYEGYAQHGVAILIETATDNTNRTVANVRSYFNKTGGTLGKTGSL 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS- 172
F F R + + D ++L +DAG E++ + D+ D A VV T+
Sbjct: 128 DFIFSRKSIFRFLPGEKDLEELEFELIDAGLEELY---LEADEEGNDIA-----VVQTAF 179
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ + L + G+ ++ + T+ +++A+++ K LI KL E DDV AVY +
Sbjct: 180 EDFGKMQKALEDTGLEMKSAKLERIALSTSPITEEQAVDVFK-LIDKLEEDDDVQAVYHN 238
>gi|114776336|ref|ZP_01451381.1| hypothetical protein SPV1_01412 [Mariprofundus ferrooxydans PV-1]
gi|114553166|gb|EAU55564.1| hypothetical protein SPV1_01412 [Mariprofundus ferrooxydans PV-1]
Length = 251
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 18/223 (8%)
Query: 16 YLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-Y 70
Y+R + + GG +P +N L A + AK +++P+D +ER I R + IE+V Y
Sbjct: 28 YIREITIAARLGGDDPDANPRLRAAITAAKGVNMPRDNIERAISRGAGGDDGENIEEVRY 87
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E YG GGV+I+V+ +TD R+VA VR GG M + G V + F +
Sbjct: 88 EGYGQGGVAILVDCMTDNRNRTVADVRSAFNKGGGNMGEAGCVSWMFHQKGQFVFASGTV 147
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN-YTDITTKLREAGIPF 189
D++QL+++AL AGA+D+ E+D+D +VS + + L + G+
Sbjct: 148 DEEQLMEVALGAGADDI------EEDSDAG-----CMIVSCEPTAFGTLHQALDDVGLEA 196
Query: 190 ETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ S +P +I V+ EA E LI +L +LDDV VY +
Sbjct: 197 QVSEIS-WVPENSISVEGEAAEKVLALIERLEDLDDVQNVYAN 238
>gi|323136015|ref|ZP_08071098.1| protein of unknown function DUF28 [Methylocystis sp. ATCC 49242]
gi|322399106|gb|EFY01625.1| protein of unknown function DUF28 [Methylocystis sp. ATCC 49242]
Length = 248
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 21/235 (8%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
KQ IR R + K G P+P N L A + AK ++PKD ++R IK+AS
Sbjct: 16 KQDAIRSKLFSKLAREITVAAKAGLPDPNMNARLRAAVLAAKAENMPKDNIDRAIKKASG 75
Query: 60 KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
E + E YE Y GGV++++E LTD R+ VR GG +A+ G+V F F R
Sbjct: 76 ADSENYDEVRYEGYAPGGVAVIIEALTDNRNRTAGEVRSYFTKAGGSLAETGAVSFMFDR 135
Query: 120 ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
+V A +D +++ A++AGA+DV TDE ++++++ ++ D+
Sbjct: 136 VGLVEFDKKVASEDAMMEAAIEAGADDV-------STTDE-----AHEIITSVESLRDVA 183
Query: 180 TKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L E F + L+ P TI+VDDEA E +L+ L + DDV VY +
Sbjct: 184 KALEE---KFGEPRKAALVWRPQNTIKVDDEAGEKILKLVGALEDNDDVQNVYAN 235
>gi|296126683|ref|YP_003633935.1| hypothetical protein [Brachyspira murdochii DSM 12563]
gi|296018499|gb|ADG71736.1| protein of unknown function DUF28 [Brachyspira murdochii DSM 12563]
Length = 247
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGG-PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG P+P N L V+ KAK ++P D ++R IKR + G+ A IE++ YE Y GG
Sbjct: 36 VKEGGSPDPDQNARLRMVIVKAKGTNMPNDNIDRAIKRGAGAGEGANIEEMSYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I+V+V TD R+ A +R + GG +A+ G+V ++F++ VV I ++ L+D
Sbjct: 96 VAIIVDVATDNKNRTAAEIRSIFSKNGGNLAENGAVSWQFKKKAVVIIPAAGNTEESLMD 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
I LDAGAED+ E D + + + + + I L+ GI E+ +
Sbjct: 156 IVLDAGAEDI------EQDGE------VFSITGPMEALSSIVDALKAKGIEPESAEIVRV 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +++A ++ K +I + DDV AV T+
Sbjct: 204 ADNTMTIAENDAKKVMK-IIGLFEDHDDVSAVATN 237
>gi|227524358|ref|ZP_03954407.1| protein of hypothetical function DUF28 [Lactobacillus hilgardii
ATCC 8290]
gi|227088589|gb|EEI23901.1| protein of hypothetical function DUF28 [Lactobacillus hilgardii
ATCC 8290]
Length = 244
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P +N L V+EKA+ ++PKD V+R I +AS G F E YE YG GG +
Sbjct: 36 AKAGDPDPENNPQLRLVMEKARAANMPKDNVQRAIDKASGLGGAKFEEITYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK--DQLLD 137
I+V LTD R+ AA+R GG + GSV + F R + + DK D +L
Sbjct: 96 IMVSALTDNKNRTAAAIRSAFTHHGGSLGASGSVSYMFDRKGYIEVLRDGLDKSEDDMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ TD + +++ + + + +L++ G +T +
Sbjct: 156 DALDAGADDM-------KTTDSE-----FQIFTDPSSLAAVRDELQKRGYDLDTAE-VRM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P TT EV + + LI +L DDV VY
Sbjct: 203 FPETTTEVPGDKISQYSGLIDELENNDDVQDVY 235
>gi|442771078|gb|AGC71775.1| hypothetical protein [uncultured bacterium A1Q1_fos_2116]
Length = 252
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 19/218 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GGP+P N L ++KAK+ VP D ++R +KR + +YE YG GV
Sbjct: 37 RTGGPDPDGNPTLYDAIQKAKKQSVPNDNIDRAVKRGGGADGSGVDYTTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFT----DADKDQ 134
+ ++E LTD R+ VR + GG MADPGSV + F R V+ + T D ++D
Sbjct: 97 AFLIECLTDNKNRAAMEVRTAMTRNGGTMADPGSVSYMFNRKGVIVVPQTQATGDTNEDD 156
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
+L L+AGAE+V D+ ++V+ + + T L+EAG+ +++ +
Sbjct: 157 ILMAVLEAGAEEV-----------NDQGA-VFEVICEPGDLVAVRTALQEAGLDYDSAD- 203
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
S +P +++VD + +LI L + DDV V+ +
Sbjct: 204 SSFVPTVSVDVDVDGATKVIKLIDALEDSDDVQNVWAN 241
>gi|398973752|ref|ZP_10684594.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM25]
gi|398142704|gb|EJM31597.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM25]
Length = 248
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 20/237 (8%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGATEADNVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L + AL+A A+DV+ +ED + V ++ ++
Sbjct: 134 FERKGQISFA-PGVDEDALTEAALEADADDVVS---HEDGS--------IDVFTSFTSFY 181
Query: 177 DITTKLREAGIPFETDNGSELL-PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG F+ D+ ++ P T+ E+D E E +LI L +LDDV VY++
Sbjct: 182 AVRNALETAG--FKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|392403583|ref|YP_006440195.1| UPF0082 protein yeeN [Turneriella parva DSM 21527]
gi|390611537|gb|AFM12689.1| UPF0082 protein yeeN [Turneriella parva DSM 21527]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 17/224 (7%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K + K GG + ++N L KA++ +PKD +ER IK+ + E + E VYE
Sbjct: 30 KEIMVAAKLGGGDESANPRLRTATLKARQNSMPKDNIERAIKKGTGELEGVTYEEGVYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GG++I+VEVLTDK +R+V ++ K GG MA+ +V + F + ++ ++ + +
Sbjct: 90 YGPGGIAIMVEVLTDKKSRTVPELKSTFKTNGGTMAEANAVAYLFDKKGLILVEGDNITE 149
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITT----KLREAGIP 188
D +++IALDAGAED + +DD E+ + V ++ +++ + + KL G
Sbjct: 150 DDVMEIALDAGAED-----IEKDD------EKVFAVKTSVNDFHAVLSAMEPKLAAKGYK 198
Query: 189 FETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ + +P TTI V+ E + ELI L + DDV VYT+
Sbjct: 199 I-VESALKYIPQTTITVEGEKAKEALELIEALEDNDDVQNVYTN 241
>gi|260495037|ref|ZP_05815166.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|260197480|gb|EEW94998.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
Length = 249
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGGDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ ++ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEIRMTFTRKDGNLGADGAVSWMFKKKGIITVKSEGIDADEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED V EDD Y+++ + + + L+ AG +E S ++
Sbjct: 156 ALEAGAED-----VEEDDG-------YFEITTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+E+ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVEITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|220927640|ref|YP_002504549.1| hypothetical protein Ccel_0181 [Clostridium cellulolyticum H10]
gi|254800643|sp|B8I4L5.1|Y181_CLOCE RecName: Full=Probable transcriptional regulatory protein Ccel_0181
gi|219997968|gb|ACL74569.1| protein of unknown function DUF28 [Clostridium cellulolyticum H10]
Length = 248
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 16/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
V+ GG +P+SN+ L V+ K K ++P D ++R+IKRAS E + E YE YG GGV
Sbjct: 36 VRMGGADPSSNSKLKDVIAKCKANNMPNDNIQRSIKRASGETDGSNYEEITYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD-ADKDQLLD 137
+++ E TD R+ +R GG + G V + F + V+ I+ D +++ L+
Sbjct: 96 AVICECTTDNRNRTAGDLRHYFDKFGGNLGQSGCVSYMFNKKGVIVIEKNDKVNEETLMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGAED D+D++ Y++++ +++ + L G F + +
Sbjct: 156 EALDAGAEDF--------DSDDN----CYEIITDPADFSTVREALEAKGYEF-IEAEVSM 202
Query: 198 LPITTIEVDD-EAMELNKELIAKLLELDDVDAVY 230
+P TT ++ D E ++ +LI L +LDDV VY
Sbjct: 203 IPTTTTKLTDPEQIKFMDKLIEALEDLDDVSNVY 236
>gi|282883309|ref|ZP_06291903.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus
lacrimalis 315-B]
gi|300813878|ref|ZP_07094183.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus sp.
oral taxon 836 str. F0141]
gi|281296813|gb|EFA89315.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus
lacrimalis 315-B]
gi|300512065|gb|EFK39260.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus sp.
oral taxon 836 str. F0141]
Length = 243
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
++GG NP N L ++KAK ++P D +ER IK+ A E F YE YG G+
Sbjct: 36 TRQGGANPDFNPQLKVAIDKAKAENLPNDNIERAIKKGAGEDDSSNFETITYEGYGPSGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
+++V+ LTD R+ +R + GG + PG V F F+ ++ I K D D D+ +
Sbjct: 96 AVMVKCLTDNRNRTAPDIRHIFDKNGGNLGTPGCVSFMFQEKGIIGILKSDDMDLDEFIL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETDNGSE 196
ALD GAEDV+ DR + ++V+ ++Y D+ KL E G F E+D
Sbjct: 156 SALDYGAEDVV-----------DRGDA-VEIVTVPESYHDVRKKLEEDGYEFVESDITFV 203
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + +D+ +++K LI L + DDV VYT+
Sbjct: 204 AQNYSKLSDEDDIKKMDK-LIDALEDNDDVQDVYTN 238
>gi|421526117|ref|ZP_15972726.1| hypothetical protein B437_03491 [Fusobacterium nucleatum ChDC F128]
gi|402257876|gb|EJU08349.1| hypothetical protein B437_03491 [Fusobacterium nucleatum ChDC F128]
Length = 249
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 115/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGSDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ ++ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEMRMTFSRKDGNLGADGAVSWMFKKKGIITVKAEGIDTDEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV T+ED Y++V + + + L+ AG +E S ++
Sbjct: 156 ALEAGAEDV---------TEED---GYFEVTTEYTEFQTVLENLKNAGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+++ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVQITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|399887944|ref|ZP_10773821.1| hypothetical protein CarbS_05335 [Clostridium arbusti SL206]
Length = 245
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 15/213 (7%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSI 80
K G NP +N L V+ KAK ++P+D + R IK+ A E + E VYE YG GV+I
Sbjct: 37 KDGSNPDTNAKLRDVVAKAKANNMPQDTITRAIKKGAGELEGVNYEEIVYEGYGPAGVAI 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLDIA 139
+V+VLTD RS + +R + GG + G V F F+R + I+ D D+D+++ A
Sbjct: 97 IVDVLTDNKNRSASNIRYIFDRNGGNLGANGCVSFMFQRKGQIIIEKKDGLDEDEVMMAA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
LDAGAED + E +++ + ++++ + L E+G F + + ++P
Sbjct: 157 LDAGAEDF------------NAEEEIFEITTAMEDFSSVREALEESGYEFMSAELT-MIP 203
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T E++ E E +++I KL + DDV VY++
Sbjct: 204 DTLTELNMEDAEKVQDIIDKLEDDDDVQDVYSN 236
>gi|387125915|ref|YP_006294520.1| DNA-binding regulatory protein [Methylophaga sp. JAM1]
gi|386272977|gb|AFI82875.1| DNA-binding regulatory protein [Methylophaga sp. JAM1]
Length = 249
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 118/214 (55%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GG +P +N L A ++KA ++ KD++ER KR + + + A E++ YE YG G+
Sbjct: 36 ARMGGSDPATNPRLRAAIDKALGSNMTKDVIERASKRGAGELEGAAYEEIRYEGYGPNGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ +TD R+VA VR V GG M GSV + F + +++ D +D +++I
Sbjct: 96 AIMVDCMTDNRNRTVAEVRHVFSKRGGNMGTDGSVAYLFNQKGIISFG-NDVTEDDVMEI 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED++ N D + V ++ ++Y+ + L AG+ ++ + +
Sbjct: 155 ALEAGAEDIV---TNADGS--------VDVFTSPEDYSAVKDALDTAGLEAQSAEVT-MH 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT+ ++ E + +I ELDDV VY++
Sbjct: 203 PDTTVSLELEDAQKAIAMIEAFEELDDVQQVYSN 236
>gi|195952876|ref|YP_002121166.1| hypothetical protein HY04AAS1_0501 [Hydrogenobaculum sp. Y04AAS1]
gi|226707647|sp|B4U7S7.1|Y501_HYDS0 RecName: Full=Probable transcriptional regulatory protein
HY04AAS1_0501
gi|195932488|gb|ACG57188.1| protein of unknown function DUF28 [Hydrogenobaculum sp. Y04AAS1]
Length = 249
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 111/210 (52%), Gaps = 16/210 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GGP+P +N L +E A+++ +P D +E+ IKR + +E +E+ VYE YG GG +
Sbjct: 37 KLGGPDPNANPRLRIAIEAARKVSMPMDTIEKAIKRGTGNDKEGALEEIVYEGYGPGGTA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V V TD ++ + VR GG + G V + F + V+ I D+++L++ A
Sbjct: 97 IMVVVATDNRNKATSEVRHAFSKHGGNLGSSGCVSYLFEQKGVIEIPKEATDEEKLMEAA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+AGA+DV E + + + D YT I L G E+ S L+P
Sbjct: 157 LEAGADDV-----------ESTEDMFIVYTNPKDVYT-IKDILASKGFTIESAKTS-LIP 203
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAV 229
TT+E+ D ++ K+L+ L LD++D V
Sbjct: 204 TTTVEIKD--VDTAKKLLNLLEHLDELDEV 231
>gi|399033905|ref|ZP_10732386.1| DNA-binding regulatory protein, YebC/PmpR family [Flavobacterium
sp. CF136]
gi|398067737|gb|EJL59216.1| DNA-binding regulatory protein, YebC/PmpR family [Flavobacterium
sp. CF136]
Length = 237
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGPNP +N+ L AV++ AK ++PKD VER IK AS
Sbjct: 13 MKRWSAMAKTFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMPKDNVERAIKNAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
K + E ++E Y G++I++E +D R+VA +R C G M GSV F F
Sbjct: 73 NKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGTMGTQGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I + D ++L +D GAE+V E DED Y S + +
Sbjct: 133 HTCNFRIAKGNLDPEELELELIDFGAEEVFE--------DEDGILIYAPFGS----FGAL 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L G+ +G E +P T E+ + + ++LI K+ E DDV VY
Sbjct: 181 QKELENRGLEI-LSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDVMNVY 231
>gi|197303366|ref|ZP_03168405.1| hypothetical protein RUMLAC_02088 [Ruminococcus lactaris ATCC
29176]
gi|197297364|gb|EDY31925.1| DNA-binding regulatory protein, YebC/PmpR family [Ruminococcus
lactaris ATCC 29176]
Length = 243
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 110/193 (56%), Gaps = 17/193 (8%)
Query: 20 VKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG +P +N+ L V+ KAK ++P D +ERNIK+A+ +G E++ YE YG G
Sbjct: 36 VKEGGSADPVNNSRLRDVIAKAKANNMPNDTIERNIKKAAGEGSADNYERITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF--RRARVVNIKFTDADKDQL 135
+I+V+ LTD R+ + VR G + PG V F F + +++ + D D D L
Sbjct: 96 TAIIVKTLTDNKNRTASNVRNAFTKGAGNVGTPGCVSFMFDEKGQIIIDKEECDMDSDDL 155
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
+ +ALDAGAED E E+D+ Y+V+++ ++++D+ KL E GI + +
Sbjct: 156 MMLALDAGAEDFNE----EEDS--------YEVLTSPEDFSDVRLKLEEEGIAMASAEVT 203
Query: 196 ELLPITTIEVDDE 208
++P T +++ E
Sbjct: 204 -MIPQTYVDLTKE 215
>gi|182418631|ref|ZP_02949908.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237668011|ref|ZP_04527995.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377493|gb|EDT75047.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237656359|gb|EEP53915.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 246
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 91/177 (51%), Gaps = 12/177 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K + VK GGPN N L V+ KAK ++P D + R+IK+AS E G F VYE
Sbjct: 30 KELMMAVKNGGPNLDINAKLRDVVAKAKAANMPNDTITRSIKKASGELGSVNFENIVYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GV+++VE LTD RS VR GG M G V F F+ + I+ D D+
Sbjct: 90 YGPNGVAVIVETLTDNKNRSAGNVRSAFTKGGGNMGTQGCVGFMFQEKGELVIEKEDRDE 149
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
D+++ +ALDAGAED + DE E + V + +++ + L GI F
Sbjct: 150 DEMMMLALDAGAEDF--------NADE---EEVFVVTTAPEDFGTVREALEAEGIEF 195
>gi|410657500|ref|YP_006909871.1| DNA-binding regulatory protein, YebC/PmpR family [Dehalobacter sp.
DCA]
gi|410660537|ref|YP_006912908.1| DNA-binding regulatory protein, YebC/PmpR family [Dehalobacter sp.
CF]
gi|409019855|gb|AFV01886.1| DNA-binding regulatory protein, YebC/PmpR family [Dehalobacter sp.
DCA]
gi|409022893|gb|AFV04923.1| DNA-binding regulatory protein, YebC/PmpR family [Dehalobacter sp.
CF]
Length = 251
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 122/218 (55%), Gaps = 19/218 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GG +P N L ++ AK ++P D ++R I++ + G+ A E++ YE YG GGV
Sbjct: 36 ARAGGADPNGNFRLKIAIDNAKAANLPNDNIQRAIQKGAGAGEGANYEELRYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD--ADKDQLL 136
+I+VE++TD R+ + +R + GG + + GSV + F +++ D D+D+++
Sbjct: 96 AIMVELMTDNRNRTASEMRHLFSKNGGNLGETGSVSWMFTEKGQLDVPKEDLKMDEDEIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+AL+AGAEDV +ED++ Y++ + D+ ++ L ++ IP E +
Sbjct: 156 LLALEAGAEDV----ASEDES--------YEIFTEPDSMQEVRQVLLDSKIPIE-NAAIN 202
Query: 197 LLPITTIEVDD--EAMELNKELIAKLLELDDVDAVYTD 232
L+P+ +E+ D +A ++ K LI L DDV VYT+
Sbjct: 203 LIPVNRVEIADIEQAKKIIK-LIDSLESHDDVQKVYTN 239
>gi|126664296|ref|ZP_01735286.1| hypothetical protein FBBAL38_11154 [Flavobacteria bacterium BAL38]
gi|126623689|gb|EAZ94387.1| hypothetical protein FBBAL38_11154 [Flavobacteria bacterium BAL38]
Length = 239
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGPNP +N+ L AV++ AK ++PKD VER IK+AS
Sbjct: 13 MKRWSAMAKTFTRIGKDIVMAVKEGGPNPETNSRLRAVIQNAKSANMPKDNVERAIKKAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K F E ++E Y G++I+VE TD R+VA +R C G GSV F F
Sbjct: 73 DKDTANFKEVLFEGYAPHGIAILVETATDNNNRTVANIRSYFNKCNGTFGTQGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D G E++ DED Y + +++ I
Sbjct: 133 HTCNFRIPAEGQDVEELELEMIDFGVEEIF--------ADEDGILMY----APFESFGTI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L G+ +G E +P T E+ + + ++L+ K+ E DDV VY
Sbjct: 181 QKELETRGLEI-LSSGFERIPQITKELTPDQVADVEKLLEKIEEDDDVMNVY 231
>gi|127513006|ref|YP_001094203.1| hypothetical protein Shew_2078 [Shewanella loihica PV-4]
gi|126638301|gb|ABO23944.1| protein of unknown function DUF28 [Shewanella loihica PV-4]
Length = 248
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 18/231 (7%)
Query: 5 QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 60
Q RG ++R + ++GG +P SN L A ++KA ++ +D VER IKR + +
Sbjct: 17 QDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRAAIDKALSNNMTRDTVERAIKRGAGE 76
Query: 61 GQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
+E + YE YG GG +++VE +TD R+V+ VR GG + GSV + F +
Sbjct: 77 LDGQVLETIMYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFSKSGGNLGTDGSVAYLFEK 136
Query: 120 ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
V++ +D+D ++D ALDAGAEDV V DDT D V +T + + +
Sbjct: 137 RGVISYA-EGSDEDTIMDAALDAGAEDV----VTNDDTSID-------VYTTPEAFGTVK 184
Query: 180 TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
L AG+ + ++P T E+D E LI L + DDV VY
Sbjct: 185 DALDAAGLD-AVNAEVTMVPSTKAELDAETAPKFLRLIDNLEDHDDVQEVY 234
>gi|302533406|ref|ZP_07285748.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302442301|gb|EFL14117.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 37 RMGGADIDGNPTLFDAVQKAKKQSVPNKNIDSAVKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R V+ + + +D +LD
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVILLPKAELTEDDVLDA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAE+V D E ++++S + + + T L+EAGI +++ + S +
Sbjct: 157 VLEAGAEEV-----------NDNGET-WEIISEATDLVAVRTALQEAGIDYDSAD-SSFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|256391546|ref|YP_003113110.1| hypothetical protein Caci_2351 [Catenulispora acidiphila DSM 44928]
gi|256357772|gb|ACU71269.1| protein of unknown function DUF28 [Catenulispora acidiphila DSM
44928]
Length = 251
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
K GG + T N L ++KAK+ VP D ++R +KR S E G + +YE Y GV
Sbjct: 37 KTGGGDVTGNPTLFDAVQKAKKNSVPADNIDRAVKRGSGAEAGGADWQTIMYEGYAPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
++++E LTD R+ + VR + GG MADPGSV + F R VV + T + +D +L
Sbjct: 97 AVLIECLTDNRNRAASEVRVAMTRNGGSMADPGSVSYMFTRKGVVLVPKTGSLTEDDILM 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
L+AGAE+V +D E ++VVS + + + T L+ A I +E+ S
Sbjct: 157 AVLEAGAEEV-------NDLGES-----FEVVSEAADLIPVRTALQSAEIDYESAE-SSF 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP +E+D++ LI L + DDV VY +
Sbjct: 204 LPSVQVELDEDGARKVFRLIEALEDSDDVQNVYAN 238
>gi|404258423|ref|ZP_10961742.1| putative transcriptional regulator [Gordonia namibiensis NBRC
108229]
gi|403402937|dbj|GAC00152.1| putative transcriptional regulator [Gordonia namibiensis NBRC
108229]
Length = 277
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 108/215 (50%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + + +YE YG G
Sbjct: 62 ARTGGGDPAGNPTLFDAIQKAKKSSVPNDNIERARKRGGGEEAGGADWQTIMYEGYGPNG 121
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I++E LTD R+ VR + GG MADPGSV + F R VV ++ +D +L
Sbjct: 122 VAILIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGVVTLEKNGQSEDDILM 181
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V + DT ++++S + + T L+EAGI +++ S
Sbjct: 182 AVLDAGAEEV----TDLGDT--------FEIISEPTDLVAVRTALQEAGIDYDSAEAS-F 228
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD E +LI L + DDV VY++
Sbjct: 229 RASVEVAVDAEGARKVFKLIDALEDSDDVQNVYSN 263
>gi|422011057|ref|ZP_16357926.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
georgiae F0490]
gi|394766751|gb|EJF47750.1| DNA-binding regulatory protein, YebC/PmpR family [Actinomyces
georgiae F0490]
Length = 253
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 117/217 (53%), Gaps = 18/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D ++R +KR S E G + +YE YG G
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKNSVPSDNIDRAVKRGSGAEAGGANYETIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLL 136
V+ +VE LTD R+ + VR GG +ADPGSV + F R V+ + D D+D ++
Sbjct: 96 VAFLVECLTDNRNRAASDVRLGFTRHGGSLADPGSVSYLFSRRGVIEVPPADGIDEDAIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ ++AGAE+V ED D + V + + + T L+EA I +++ +
Sbjct: 156 EAVIEAGAEEV------EDTGDG------FVVETEPQDVVAVRTALQEASIDYDSAE-VQ 202
Query: 197 LLPITTIEVDDE-AMELNKELIAKLLELDDVDAVYTD 232
+ T IE+D E A+++NK LI L + DDV +YT+
Sbjct: 203 FVASTEIELDLEGALKVNK-LIDALEDSDDVQNIYTN 238
>gi|85706421|ref|ZP_01037515.1| hypothetical protein ROS217_16040 [Roseovarius sp. 217]
gi|85669194|gb|EAQ24061.1| hypothetical protein ROS217_16040 [Roseovarius sp. 217]
Length = 246
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 107/215 (49%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L +++AK +PKD +ER IK+A E + E YE YG GV+
Sbjct: 36 AKMGDPDPDKNPRLRLAIKEAKAQSMPKDNIERAIKKAMGGDAEDYEEIRYEGYGPNGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE +TD R+ + VR GG + + GSV F F R V + D D ++ A
Sbjct: 96 IIVEAMTDNRNRTASNVRSTFTKNGGNLGETGSVAFMFERKGEVTYPASVGDADTVMMAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
L+AGAEDV + E + + + ++ + L EA N ++L+
Sbjct: 156 LEAGAEDV------------ESGEDGHTIWCADTDLSEAASALEEA---LGESNSTKLVW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT E+D E+M+ +LI L + DDV V T+
Sbjct: 201 KPTTTTEMDLESMQKLMKLIEALEDDDDVQRVTTN 235
>gi|414341373|ref|YP_006982894.1| hypothetical protein B932_0354 [Gluconobacter oxydans H24]
gi|411026708|gb|AFV99962.1| hypothetical protein B932_0354 [Gluconobacter oxydans H24]
gi|453330651|dbj|GAC87397.1| hypothetical protein NBRC3255_1058 [Gluconobacter thailandicus NBRC
3255]
Length = 249
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q R LR + + G P+P SN L A + A+E ++PKD VER I
Sbjct: 11 MHRKGAQDAKRAKQFAKILREITVAARSGLPDPASNPRLRAAVTAAREANMPKDNVERAI 70
Query: 55 KRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
K+AS G E ++E YE YG GV+I+VE LTD R+ VR GG + + SV
Sbjct: 71 KKASGAAGGEDYVEVRYEGYGPAGVAIIVEGLTDNRNRTAGEVRAAFSKHGGSLGESNSV 130
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F+R VV A +D++L+ A++AGA++ + E +++ +
Sbjct: 131 SFMFQRLGVVTYPVDAASEDEMLEAAIEAGADNAV------------LTEEGHEITCEME 178
Query: 174 NYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
N+ + L F ++L P ++ +D+E +LI L + DDV AVY
Sbjct: 179 NFFAVRDALESR---FGEPQSAKLDWRPENSVSLDEEKARTVLKLIDVLEDNDDVQAVYA 235
Query: 232 D 232
+
Sbjct: 236 N 236
>gi|398831212|ref|ZP_10589391.1| DNA-binding regulatory protein, YebC/PmpR family [Phyllobacterium
sp. YR531]
gi|398212780|gb|EJM99382.1| DNA-binding regulatory protein, YebC/PmpR family [Phyllobacterium
sp. YR531]
Length = 249
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+P N L ++ A+ +PKD +ER IK+A+ E + E YE YG GGV+
Sbjct: 36 AKQGLPDPLMNPRLRLAVQNARAQSMPKDNIERAIKKAAGGDAENYEEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + K + D++++ A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKAGGALGETGSVGFMFNRVGEITYKTEVGNADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV +DE+ + ++ ++ D++ L EA + P
Sbjct: 156 IEAGAEDVA--------SDEEG----HVIICAFEDIGDVSKAL-EAALGEAESIKPIWKP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TT VD+E + LIA L + DDV VY +
Sbjct: 203 ATTAPVDEEKAQSVLRLIATLDDDDDVQNVYAN 235
>gi|374850298|dbj|BAL53290.1| hypothetical conserved protein [uncultured Aquificae bacterium]
Length = 249
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 16/199 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
V++GGPNP +N+ L +E A+ +++P + +ER IK+ A E G E++ E +YE YG GGV
Sbjct: 36 VREGGPNPETNSRLRTAIENARRVNMPAETIERAIKKGAGEMGGESYEEVLYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V TD R+ A +R V GG + G V + F R + + +D L +
Sbjct: 96 AIMVMATTDNRNRTTAEIRHVFSKHGGNLGSSGCVSYMFERVGYMEVPKEGLSEDVLYEK 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A++AGAED+ + E Y + + + + + L + IP E +
Sbjct: 156 AIEAGAEDI------------ETGETSYIIYTKPEMFYTVKDSLLKENIPVENATIT-YK 202
Query: 199 PITTIEVDDEAMELNKELI 217
P++T+++ D E K+LI
Sbjct: 203 PLSTVQITDP--ETAKKLI 219
>gi|108761477|ref|YP_633130.1| hypothetical protein MXAN_4974 [Myxococcus xanthus DK 1622]
gi|118574376|sp|Q1D2J3.1|Y4974_MYXXD RecName: Full=Probable transcriptional regulatory protein MXAN_4974
gi|108465357|gb|ABF90542.1| conserved hypothetical protein TIGR01033 [Myxococcus xanthus DK
1622]
Length = 249
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 118/211 (55%), Gaps = 14/211 (6%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIV 81
GG P+ N L L A+E ++PKD +ER IK+ + E E + E YE YG GGV+I+
Sbjct: 39 GGGEPSGNARLRVALAAAREANIPKDTIERAIKKGTGELEGENYEEVTYEGYGPGGVAIL 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
VE LTD R+ A +R GG + G+V + F++ V+++K+ ++ DQL++ A+D
Sbjct: 99 VECLTDNRNRTAADMRSTFSAYGGNLGAEGAVAWMFQKKGVISVKYGPSE-DQLMEQAID 157
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDVI + D+ E R + +D +T + +L+E+G+P LP
Sbjct: 158 AGAEDVI---MLGDEGSEVR-------TAAADLHT-VAGRLQESGLPLGQQRWV-FLPQN 205
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ +D + ++ +L+ L E DDV V+ +
Sbjct: 206 TVALDVDTVKKLLKLLDALEENDDVQNVHGN 236
>gi|42526995|ref|NP_972093.1| hypothetical protein TDE1487 [Treponema denticola ATCC 35405]
gi|422341989|ref|ZP_16422929.1| hypothetical protein HMPREF9353_01595 [Treponema denticola F0402]
gi|449102659|ref|ZP_21739407.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola AL-2]
gi|449107345|ref|ZP_21744001.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ASLM]
gi|449109440|ref|ZP_21746074.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33520]
gi|449111952|ref|ZP_21748507.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33521]
gi|449113244|ref|ZP_21749759.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 35404]
gi|449115833|ref|ZP_21752293.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H-22]
gi|449120114|ref|ZP_21756500.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H1-T]
gi|449122519|ref|ZP_21758852.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola MYR-T]
gi|449131250|ref|ZP_21767466.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP37]
gi|451969040|ref|ZP_21922269.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola US-Trep]
gi|49036513|sp|P62042.1|Y1487_TREDE RecName: Full=Probable transcriptional regulatory protein TDE_1487
gi|41817419|gb|AAS12004.1| conserved hypothetical protein TIGR01033 [Treponema denticola ATCC
35405]
gi|325474057|gb|EGC77245.1| hypothetical protein HMPREF9353_01595 [Treponema denticola F0402]
gi|448940083|gb|EMB20994.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP37]
gi|448947509|gb|EMB28353.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola MYR-T]
gi|448948258|gb|EMB29095.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H1-T]
gi|448955319|gb|EMB36086.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H-22]
gi|448956233|gb|EMB36994.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33521]
gi|448958683|gb|EMB39411.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33520]
gi|448960824|gb|EMB41533.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 35404]
gi|448962590|gb|EMB43278.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ASLM]
gi|448966248|gb|EMB46906.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola AL-2]
gi|451702212|gb|EMD56641.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola US-Trep]
Length = 247
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG +P +N L + KA+ ++PKD +ER IK+ + E G + E +YE YG GGV+
Sbjct: 37 KMGGGDPATNPRLRTAVLKARAANMPKDNIERAIKKGTGELGAVNYEELLYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VEVLTD R+ A+VR + GG + GSV + F R V+ ++ +++ A
Sbjct: 97 VLVEVLTDNKNRTAASVRNIFTKSGGNLGATGSVAYMFNRKGVIEYDAEVVSEEAIMEAA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELL 198
L+AGAED+ ED V + +++ + L+E G FE+ + + ++
Sbjct: 157 LEAGAEDI----ATEDGV--------ITVTTDPNDFASVLEALQEKG--FESVSAAVSMV 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T + +D + + ++I KL E DDV V ++
Sbjct: 203 PDTYVALDADTTQKALKMIDKLEEDDDVQTVSSN 236
>gi|347525907|ref|YP_004832655.1| hypothetical protein LRC_14710 [Lactobacillus ruminis ATCC 27782]
gi|345284866|gb|AEN78719.1| Conserved hypothetical protein [Lactobacillus ruminis ATCC 27782]
Length = 243
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 113/215 (52%), Gaps = 18/215 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P +N L V++KA+ ++PKD ++R + +A+ + E YE YG GV+
Sbjct: 36 AKSGGPDPDANPQLRLVMDKARAANMPKDNIKRALDKATGANGANYEEITYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
I+V LTD R+ +AVR GG + + GSV F F R + I + D D+D +L+
Sbjct: 96 ILVHALTDNRNRTASAVRADFNRNGGNLGETGSVAFMFDRKGYIAIDREDLDVDEDSMLE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
AL+AGA+D+ +E +++ + + D+ +L+ ++ D
Sbjct: 156 DALNAGADDL------------QASEEVFEIYTDPQAFEDVRNELQNK---YDLDTAEIT 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T+ V + +E + LI +L + DDV V+T
Sbjct: 201 MVPQNTVPVPADKVEQLQRLIDRLEDEDDVSEVFT 235
>gi|452125602|ref|ZP_21938185.1| hypothetical protein F783_08789 [Bordetella holmesii F627]
gi|452128965|ref|ZP_21941541.1| hypothetical protein H558_08573 [Bordetella holmesii H558]
gi|451920697|gb|EMD70842.1| hypothetical protein F783_08789 [Bordetella holmesii F627]
gi|451924835|gb|EMD74975.1| hypothetical protein H558_08573 [Bordetella holmesii H558]
Length = 243
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 115/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GG +P SN L +KA + ++PKD ++R I+R + A E+V YE YG GG
Sbjct: 36 ARAGGADPDSNPRLRLAWDKATDANMPKDNIQRAIQRGAGGADGADYEEVRYEGYGVGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD TR+VA VR GG + GSV F F+ + + +D+++++
Sbjct: 96 AVIVDCMTDNRTRTVAEVRHAFTKNGGNLGQEGSVAFMFKHCGQF-LFAPGSSEDKVMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV+ TDE E +VV +Y + AG+ E D G +
Sbjct: 155 ALEAGAEDVL--------TDE---EGGIEVVCAPADYAALRQAFDTAGLKAEVD-GIIMK 202
Query: 199 PITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
+ E+ D+A+++ K L+ L LDDV VYT+
Sbjct: 203 ALNETELTGDDAIKMQK-LLDVLEGLDDVQEVYTN 236
>gi|403530965|ref|YP_006665494.1| hypothetical protein RM11_1081 [Bartonella quintana RM-11]
gi|403233036|gb|AFR26779.1| hypothetical protein RM11_1081 [Bartonella quintana RM-11]
Length = 248
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERAIKKASGNDVEHYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + K D +++ A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKSGGALGETGSVSFMFHRIGEIIYKPAAGTADSIMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV E + + +N ++ +K+ EA + E ++ +
Sbjct: 156 IEAGAEDV------------QSEETGHSITCAFENLGEV-SKMLEAKLG-EAESIKTVWK 201
Query: 200 ITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 232
TT+ DE L+ LIA L E DDV VY +
Sbjct: 202 ATTLAPVDEEKALSILRLIATLEEDDDVQNVYAN 235
>gi|340616488|ref|YP_004734941.1| hypothetical protein zobellia_479 [Zobellia galactanivorans]
gi|339731285|emb|CAZ94550.1| Conserved hypothetical protein [Zobellia galactanivorans]
Length = 236
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGP+P SN+ L AV++ AK +++PKD +ER IKRAS
Sbjct: 13 MKRWSAMSKAFTRIGKDIVIAVKEGGPDPDSNSRLRAVIQNAKSVNMPKDNIERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K + E ++E Y G++I++E TD TR+VA +R C G + GSV F F
Sbjct: 73 DKSLGDYKEVLFEGYAPHGIAILIETATDNNTRTVANIRSYFNKCDGSLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V V++D + + +++ I
Sbjct: 133 HTCNFRIPAEGIDPEELELELIDFGAEEVF---VDDDGI---------LIYAPFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L I +G E +P T ++ +E ++L+ K+ E DDV VY
Sbjct: 181 QKELENREIEI-LSSGFERIPQVTKQLSEEEAADVEKLLEKIEEDDDVQNVY 231
>gi|222055419|ref|YP_002537781.1| hypothetical protein Geob_2326 [Geobacter daltonii FRC-32]
gi|254801298|sp|B9LZC7.1|Y2326_GEOSF RecName: Full=Probable transcriptional regulatory protein Geob_2326
gi|221564708|gb|ACM20680.1| protein of unknown function DUF28 [Geobacter daltonii FRC-32]
Length = 247
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 119/217 (54%), Gaps = 21/217 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFI--EKVYEVYGYGG 77
K GG +P N L ++KAK ++PKD +ER IK+ + G + + E YE YG GG
Sbjct: 36 AKLGGGDPDGNPRLRTAIDKAKGENMPKDNIERAIKKGT-GGMDGVVYEETTYEGYGPGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLL 136
+++VEV+TD R+V+ VR + C G M + G V + F ++ +V K D DK L
Sbjct: 95 AAVLVEVMTDNRNRTVSDVRSIFTKCNGNMGEAGCVSWMFDKKGLIVFPKSVDFDK--LF 152
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS- 195
+ A++AGAEDV +DED +V + N+ ++ L +AG F+ D+
Sbjct: 153 EAAIEAGAEDV---------SDED---EQIEVTTDPSNFMEVRDALEKAG--FKPDSAEV 198
Query: 196 ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T ++++ + E +L+ ++ + DDV VY++
Sbjct: 199 TMIPQTMVKLEGKQAENMLKLMDRMEDNDDVQNVYSN 235
>gi|406980566|gb|EKE02148.1| hypothetical protein ACD_20C00419G0011 [uncultured bacterium]
Length = 249
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 23/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K GG P +N L ++KAK +P D ++R + +AS G IE++ YE YG GGV
Sbjct: 36 AKTGGATPETNFRLRTAIDKAKAAGLPNDNIKRALDKASGSGAGDNIEEITYEGYGAGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E +TD R+ +R G + + G V + F+ +++I D D+DQL +
Sbjct: 96 AILIETMTDNRNRTAGDIRSYFNKFNGNLGETGCVGWMFKEEGIISIDKADIDQDQLFET 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE----TDNG 194
A++ GAED + DED Y+V++T++ D+ ++ AG + T N
Sbjct: 156 AINTGAEDFV--------ADEDE----YRVITTTETLQDVAEQIELAGYKLKNVEVTRN- 202
Query: 195 SELLPITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
P TI ++D E+ + L+ + DDV VY +
Sbjct: 203 ----PQNTITIEDIESAKQVLRLLDNIENHDDVQNVYAN 237
>gi|423718020|ref|ZP_17692210.1| UPF0082 protein [Bartonella tamiae Th307]
gi|395426453|gb|EJF92580.1| UPF0082 protein [Bartonella tamiae Th307]
Length = 248
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GV+
Sbjct: 36 AKQGAPDPAMNPRLRLAVQNAKSQSMPKDNIERAIKKASGGDAENYDEVRYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + K D D +++ A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKSGGALGETGSVGFMFNRVGEIIYKVDAGDNDTVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV +DE+ + ++ ++ +++ L A E+ + P
Sbjct: 156 IEAGAEDV--------QSDEEG----HVIICAFEDIGEVSKALETALGEAESIK-TVWKP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
IT VD+E + LI+ L + DDV VY +
Sbjct: 203 ITGAAVDEEKAQSVLRLISTLEDDDDVQNVYAN 235
>gi|357639165|ref|ZP_09137038.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
urinalis 2285-97]
gi|418417156|ref|ZP_12990354.1| UPF0082 protein [Streptococcus urinalis FB127-CNA-2]
gi|357587619|gb|EHJ57027.1| DNA-binding regulatory protein, YebC/PmpR family [Streptococcus
urinalis 2285-97]
gi|410873212|gb|EKS21148.1| UPF0082 protein [Streptococcus urinalis FB127-CNA-2]
Length = 238
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 12/212 (5%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K+G P+P SN+ L VLE+AK+ VPK ++++ I +A E F+E YE +G G I
Sbjct: 35 KQGDPDPESNSALKFVLERAKQAQVPKHVIDKAIDKAKGNTDETFVEGCYEGFGPNGSMI 94
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+V+ LT + R+ A VR GG M GSV + F + V I F D D + ++ L
Sbjct: 95 IVDTLTSNVNRTAANVRSAYGKNGGNMGASGSVSYMFDKKGV--IVFAGDDADSIFELLL 152
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+A E V++ ++DE Y + +D + I LRE+GI E++P
Sbjct: 153 EADVE------VDDVESDEGTITVY---TAPTDLHKGIEA-LRESGISEFQVTELEMIPQ 202
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ + ++ E +E ++LI L DDV VY +
Sbjct: 203 SEVTLEGEDLETFEKLIDALEADDDVQKVYHN 234
>gi|329938967|ref|ZP_08288341.1| hypothetical protein SGM_3833 [Streptomyces griseoaurantiacus M045]
gi|329301852|gb|EGG45745.1| hypothetical protein SGM_3833 [Streptomyces griseoaurantiacus M045]
Length = 250
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ IKR E G + +YE YG GV
Sbjct: 37 RMGGVDLEGNPTLYDAVQKAKKQSVPNKNIDSAIKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + D +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGDLGEDDVLTA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V D E ++V+S + + + T L+EAGI +++ + + +
Sbjct: 157 VLDAGAEEV-----------NDLGES-FEVLSEATDLVAVRTALQEAGIDYDSAD-TNFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E + +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGAKKIFKLIDALEDSDDVQNVFAN 237
>gi|442322408|ref|YP_007362429.1| hypothetical protein MYSTI_05467 [Myxococcus stipitatus DSM 14675]
gi|441490050|gb|AGC46745.1| hypothetical protein MYSTI_05467 [Myxococcus stipitatus DSM 14675]
Length = 233
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 112/211 (53%), Gaps = 14/211 (6%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIV 81
GG +P+ N L L A+E ++PKD +ER IK+ + E E++ E +YE YG GGV+++
Sbjct: 23 GGGDPSGNARLRVALGLAREANIPKDTIERAIKKGTGELEGESYEEVMYEGYGPGGVAVL 82
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
VE LTD R+ A VR V GG + G+V + F + VV +K A+ D +L+ AL+
Sbjct: 83 VECLTDNRNRTSADVRSVFGRHGGNLGAEGAVAWMFHKKGVVTVKPGPAE-DAVLEKALE 141
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDV+ P D ++V + + + L AG+ + LP
Sbjct: 142 AGAEDVL--PQGSDG---------FEVRTAPADLHTVAVSLESAGLSL-GEQKWMYLPQN 189
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+++D + + +L+ L + DDV V+ +
Sbjct: 190 TVQLDGDNAKKMLKLMDALEDNDDVQNVHAN 220
>gi|431932849|ref|YP_007245895.1| YebC/PmpR family DNA-binding regulatory protein [Thioflavicoccus
mobilis 8321]
gi|431831152|gb|AGA92265.1| DNA-binding regulatory protein, YebC/PmpR family [Thioflavicoccus
mobilis 8321]
Length = 249
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 115/216 (53%), Gaps = 22/216 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
++GG +P +N L ++KA ++P+D VER +KR A + E + E YE YG GG
Sbjct: 36 AREGGGDPNANPRLRLAMDKAFGANMPRDTVERAVKRGAGDTEGENYEELRYEGYGPGGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD R+ A VR GG + GSV + F + +++ + D+D +++
Sbjct: 96 AVMVDCMTDNRNRTAAEVRHAFTKYGGNLGTDGSVAYLFTKQGIISFQ-PGTDEDTVIEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE----TDNG 194
AL+AGAEDVI VN+D + V++T +++ + L AG+ E T N
Sbjct: 155 ALEAGAEDVI---VNDDSS--------LDVITTPEDFAAVKDALTTAGLDTEAAEVTFNA 203
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
S T E+D E E +L+ L +LDDV VY
Sbjct: 204 S-----TQAELDAETAERLLKLVDALEDLDDVQEVY 234
>gi|300870812|ref|YP_003785683.1| hypothetical protein BP951000_1193 [Brachyspira pilosicoli 95/1000]
gi|404477299|ref|YP_006708730.1| glucose-1-phosphate adenylyltransferase [Brachyspira pilosicoli
B2904]
gi|431808372|ref|YP_007235270.1| hypothetical protein BPP43_09150 [Brachyspira pilosicoli P43/6/78]
gi|434383385|ref|YP_006705168.1| hypothetical protein WESB_2618 [Brachyspira pilosicoli WesB]
gi|300688511|gb|ADK31182.1| conserved hypothetical protein [Brachyspira pilosicoli 95/1000]
gi|404432034|emb|CCG58080.1| hypothetical protein WESB_2618 [Brachyspira pilosicoli WesB]
gi|404438788|gb|AFR71982.1| glucose-1-phosphate adenylyltransferase [Brachyspira pilosicoli
B2904]
gi|430781731|gb|AGA67015.1| hypothetical protein BPP43_09150 [Brachyspira pilosicoli P43/6/78]
Length = 248
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGG-PNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGG 77
VK+GG P+P N L V+ KAK ++P D ++R IKR + G+ A IE++ YE Y GG
Sbjct: 36 VKEGGSPDPDQNARLRMVIVKAKGTNMPNDNIDRAIKRGAGAGEGANIEEMSYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I+V+V TD R+ A +R + GG +A+ G+V ++F++ VV I ++ L+D
Sbjct: 96 VAIIVDVATDNKNRTAAEIRSIFSKNGGNLAENGAVSWQFKKKAVVIIPAAGNTEESLMD 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
I LDAGAED+ ++ E + + + + I L+ I E+ +
Sbjct: 156 IVLDAGAEDI------------EQDEEVFTITGPMEALSSIVDALKAKNIEPESAEIVRI 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +++A ++ K +I+ + DDV AV T+
Sbjct: 204 ADNTMTIAENDAKKVMK-IISLFEDHDDVSAVATN 237
>gi|347531849|ref|YP_004838612.1| hypothetical protein RHOM_07835 [Roseburia hominis A2-183]
gi|345501997|gb|AEN96680.1| hypothetical protein RHOM_07835 [Roseburia hominis A2-183]
Length = 242
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 16/192 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIE-KVYEVYGYGGV 78
VK+GGP+P +N LA V+ KA+ ++P D +ER IK+A+ G E YE YG G
Sbjct: 36 VKEGGPDPANNFKLAQVIAKARSNNMPNDTIERGIKKAAGDGNSVNYEFCTYEGYGPSGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKF-TDADKDQLL 136
+I+V+ LTD R+ A VR G + G V + F + +++ K + D D+L+
Sbjct: 96 AIIVKCLTDNKNRTAANVRNAFTKGHGSIGTQGCVSYMFDEKGQIIVAKEDYEGDADELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
ALDAGAED E E+D+ Y++++ D++ D+ L +AGIP +
Sbjct: 156 MQALDAGAEDFSE----EEDS--------YEILTAPDDFEDVRRALEDAGIPM-AEASVT 202
Query: 197 LLPITTIEVDDE 208
+LP +E+ E
Sbjct: 203 MLPQNYVELTAE 214
>gi|240016985|ref|ZP_04723525.1| hypothetical protein NgonFA_07427 [Neisseria gonorrhoeae FA6140]
gi|268601724|ref|ZP_06135891.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268585855|gb|EEZ50531.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
Length = 242
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 30/224 (13%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGG 77
+ GG +P +N L LEKA E ++PKD V+R I + + +G E +IE YE YG GG
Sbjct: 36 ARMGGGDPGANPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVE-YIELRYEGYGIGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+++V+ LTD TR+VA VR GG + G V F F + + D+D+L++
Sbjct: 95 AALMVDCLTDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFE-PGVDEDELME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAG-------IPFE 190
AL+AGAEDV+ N+D + E V++ +++ + + L AG +
Sbjct: 154 AALEAGAEDVV---TNDDGSIE--------VITAPNDWAGVKSALEAAGYKSVDGDVTMR 202
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T N +EL D+A+++ K LI L +LDDV VYT +
Sbjct: 203 TQNETEL-------SGDDAVKMQK-LIDALEDLDDVQDVYTSAV 238
>gi|283796372|ref|ZP_06345525.1| glucose-1-phosphate adenylyltransferase [Clostridium sp. M62/1]
gi|291075780|gb|EFE13144.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium sp.
M62/1]
gi|295091465|emb|CBK77572.1| conserved hypothetical protein TIGR01033 [Clostridium cf.
saccharolyticum K10]
Length = 242
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 103/192 (53%), Gaps = 16/192 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D +ER IK+A+ E++ YE YG GV
Sbjct: 36 VKEGGADPANNSRLRDVIAKAKANNMPNDTIERGIKKAAGDANSVNYEELTYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V LTD R+ A VR GG + GSV F F + +++ + D D D L+
Sbjct: 96 AIIVTALTDNKNRTAANVRSAFTKGGGNIGAQGSVSFMFDKKGQIIIDKEECDMDADTLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
ALDAGAED E E D+ Y++V+ D+++ + L GIP +
Sbjct: 156 MEALDAGAEDFAE----EADS--------YEIVTDPDDFSAVREALEAKGIPM-MEAEVT 202
Query: 197 LLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 203 MIPQTWVELTDE 214
>gi|408789886|ref|ZP_11201527.1| hypothetical protein B807_340 [Lactobacillus florum 2F]
gi|408520908|gb|EKK20930.1| hypothetical protein B807_340 [Lactobacillus florum 2F]
Length = 246
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 110/213 (51%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG + SN L LEKA+ ++PKD V+R + +AS G F E YE YG GG +
Sbjct: 36 AKVGGVDAESNPQLRLELEKARAANMPKDNVQRALDKASGVGGAKFEEVTYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
++V LTD R+ AA+R GG + GSV + F R V++ T D+D +L
Sbjct: 96 VMVSALTDNKNRTAAAIRSAFTHHGGSLGTNGSVSYMFDRKGFVSVLRDTTTDDEDTMLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ TD + Y++ + + T + L++AG +T L
Sbjct: 156 SALDAGADDM-------KATDSE-----YQIFTAPASMTAVRDALQQAGYQLDTAE-VRL 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P TT EV ++ ++ LI +L E DDV VY
Sbjct: 203 FPETTTEVPEDKVDQYSALIDELSEDDDVQDVY 235
>gi|293608324|ref|ZP_06690627.1| hypothetical protein HMPREF0013_00452 [Acinetobacter sp. SH024]
gi|375134497|ref|YP_004995147.1| hypothetical protein BDGL_000879 [Acinetobacter calcoaceticus
PHEA-2]
gi|427422834|ref|ZP_18913008.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-136]
gi|292828897|gb|EFF87259.1| hypothetical protein HMPREF0013_00452 [Acinetobacter sp. SH024]
gi|325121942|gb|ADY81465.1| hypothetical protein BDGL_000879 [Acinetobacter calcoaceticus
PHEA-2]
gi|425700469|gb|EKU70052.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-136]
Length = 249
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 26/238 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-AS 58
KQ RG Y+R + K GG +P SN L AV+EKA +++ +D + R I+R A
Sbjct: 16 KQDASRGKVFTKYIREIVTAAKLGGGDPASNPRLRAVVEKALSVNMTRDTINRAIQRGAG 75
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GGV+++VE +TD + R+V VR G + GSV + F
Sbjct: 76 GEDNDDLKEVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTAGSVSYLFT 135
Query: 119 RARVVNIKFTDAD-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTD 177
+ I F D +D+++++AL+AGAED+ V+ED+ V+++ + + +
Sbjct: 136 KRG--EITFEDVSLEDKIMEVALEAGAEDI---EVSEDE---------ILVITSPETFGE 181
Query: 178 ITTKLREAGIPFETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG+ ++DN ++ P T E+ D+A ++ K +I +LDDV VYT+
Sbjct: 182 VQDALTAAGL--KSDNAEVVMSPSTKAEITDVDQAKQILK-MIDMFEDLDDVQNVYTN 236
>gi|134299515|ref|YP_001113011.1| hypothetical protein Dred_1658 [Desulfotomaculum reducens MI-1]
gi|189038975|sp|A4J533.1|Y1658_DESRM RecName: Full=Probable transcriptional regulatory protein Dred_1658
gi|134052215|gb|ABO50186.1| protein of unknown function DUF28 [Desulfotomaculum reducens MI-1]
Length = 242
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 116/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
+ GG +P N L A +EKAK ++P D ++R I++ + G A F E YE YG GG+
Sbjct: 36 ARNGGADPNGNMRLKAAIEKAKIANIPNDNIQRAIQKGAGGGDGANFEEFSYEGYGPGGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD--KDQLL 136
+I++ V TD R+ VR ++ GG + + G V + F ++ I ++ + +D ++
Sbjct: 96 AILLNVATDNRNRTAGEVRHILSKHGGNLGETGCVNWMFDEKGIIIIDRSEVNMSEDDIM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
AL+AGAEDV EDD+ +++ + ++ + T L + GIP D +
Sbjct: 156 LAALEAGAEDV----KVEDDS--------FEISTAPEDLQSVKTALIDQGIPV-ADADTT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT+++ E E ++I L + DD+ V+T+
Sbjct: 203 MVPQTTVKLQGEDAEKMNKMIELLEDNDDIQEVFTN 238
>gi|332528320|ref|ZP_08404320.1| hypothetical protein HGR_00425 [Hylemonella gracilis ATCC 19624]
gi|332042191|gb|EGI78517.1| hypothetical protein HGR_00425 [Hylemonella gracilis ATCC 19624]
Length = 239
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 115/214 (53%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GG +P++N L ++KAK ++P D V+ NI +A+ + E++ YE YG GG
Sbjct: 36 ARAGGGDPSANPRLRLAIDKAKAANMPADRVKYNIDKATGNQEGVNYEEIRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ +TD R+VA VR GG M GSV F+F+ + I +D+++++
Sbjct: 96 AIIVDTMTDNRVRTVAEVRHAFSKHGGNMGTEGSVAFQFKHCGQL-IFAPGTSEDKVMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDVI DED A +V++ ++ + L AG+ E G +
Sbjct: 155 ALEAGAEDVI--------ADEDGA---IEVLTAPADFEAVKNALEAAGLKPEV-AGVTMR 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TIE+ + E ++L+ + +LDDV VY +
Sbjct: 203 AENTIELSGDDAEKMQKLLDVIEDLDDVQDVYHN 236
>gi|343521369|ref|ZP_08758337.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas sp.
oral taxon 393 str. F0440]
gi|343396575|gb|EGV09112.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas sp.
oral taxon 393 str. F0440]
Length = 247
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P N L +EKAK ++P D +ER +K+ + G + E + YE YG G+
Sbjct: 36 VKEGGADPEYNPALKTAIEKAKAENMPNDNIERALKKGAGDGDASNYETIIYEGYGPEGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++VVE LTD R+ A VR GG + GSV+F F + V+ I A++D L+D
Sbjct: 96 AVVVECLTDNRNRTAADVRHAFDKHGGNLGQNGSVLFMFEKKGVIVITREQAEEDDLMDF 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+ GA D E D E Y V S ++ + L+E G F + E +
Sbjct: 156 ALENGASDF------ESD------EEVYTVYSEVADFITLRDALQEKGYTFSACD-LEYV 202
Query: 199 PITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
P ++ + E ++ ++I +L + DDV VY +
Sbjct: 203 PSNNSQITNPENIKKMVKMIDQLEDNDDVQNVYHN 237
>gi|408492793|ref|YP_006869162.1| quorum sensing repressing transcriptional regulator, putative
[Psychroflexus torquis ATCC 700755]
gi|408470068|gb|AFU70412.1| quorum sensing repressing transcriptional regulator, putative
[Psychroflexus torquis ATCC 700755]
Length = 236
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + +VK+GGP+P N L AV++ AK ++PK+ VER IKRAS
Sbjct: 13 MKRWSAMAKTFTRLGKDIVMSVKEGGPDPVINAKLRAVIQNAKTANMPKENVERAIKRAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K + +YE Y G++I+VE TD R+VA VR C G + GSV F F
Sbjct: 73 DKSLGDYKTVLYEGYAPYGIAILVETATDNTNRTVANVRSYFNKCNGNLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D + L +D GAE+V E DED Y + N+ DI
Sbjct: 133 HTCNFRISSEGRDVETLELEMIDFGAEEVFE--------DEDGIIIY----APFQNFGDI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
E+ I +G + +P T + +E E +L+ K+ E +DV VY
Sbjct: 181 QKHFEESHIEI-LASGFDRIPQVTKGLSEEEKEDVDKLLEKIEEDEDVQNVY 231
>gi|290961819|ref|YP_003493001.1| hypothetical protein SCAB_74861 [Streptomyces scabiei 87.22]
gi|260651345|emb|CBG74467.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 37 RMGGVDIEGNPTLYDAIQKAKKQSVPNKNIDSAVKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L++
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELSEDDVLEV 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+EAGI +++ + +
Sbjct: 157 VLDAGAEEV-------NDLGE-----AFEVLSEATDMVAVRTSLQEAGIDYDSAE-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|291459574|ref|ZP_06598964.1| glucose-1-phosphate adenylyltransferase [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417852|gb|EFE91571.1| glucose-1-phosphate adenylyltransferase [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 246
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 22/221 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P SN+ L V+ KAK ++P D + IK+A+ + E++ YE YG GV
Sbjct: 36 VKQGGADPASNSKLRDVIAKAKANNMPNDTINNGIKKAAGSLESVNFEELQYEGYGVNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVV----NIKFTDADKD 133
+I+V+ LTD RS A VR G + GSV F F + +++ ++ D D D
Sbjct: 96 AIIVKALTDNKNRSAADVRSAFAKGRGSLGTQGSVSFLFDEKGQIILDKEAMEDLDKDFD 155
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETD 192
L+++AL+AGAED+ E E+D+ Y+++++ ++++ + +L + GIP E D
Sbjct: 156 SLMELALEAGAEDIRE----EEDS--------YEILTSPEDFSSVREELEKQGIPMAEAD 203
Query: 193 NGSELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
++P + V ++EA++ + + L E DDV VYT+
Sbjct: 204 --IVMIPQNYVSVTEEEAVKNLRRTLDLLEESDDVQNVYTN 242
>gi|416109749|ref|ZP_11591629.1| hypothetical protein RAYM_07144 [Riemerella anatipestifer RA-YM]
gi|315023543|gb|EFT36547.1| hypothetical protein RAYM_07144 [Riemerella anatipestifer RA-YM]
Length = 246
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P SN L ++ AK ++PKD VER IK+AS E + E YE YG GGV+
Sbjct: 34 VKAGGPDPDSNPALRRCIQNAKGANMPKDNVERAIKKASGADAENYEEITYEGYGQGGVA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK--FTDADKDQLLD 137
VE T+ TR+VA VR + G + G + F F R + ++ D ++
Sbjct: 94 FFVECTTNNSTRTVANVRAIFNKFDGNLGKNGELSFLFDRKGIFTLEKSLIKMDWEEFEM 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
+D GAED ++ DDT+ V + +++ ++ KL E GI E N +
Sbjct: 154 EMIDGGAED-----IDSDDTE-------VMVTTAFEDFGPLSHKLDELGI--EVKNAELQ 199
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P + V +E N +++ + E DDV VY +
Sbjct: 200 RIPNISKSVSEEQFIANMKMLQRFEEDDDVQNVYHN 235
>gi|172040613|ref|YP_001800327.1| hypothetical protein cur_0933 [Corynebacterium urealyticum DSM
7109]
gi|448823591|ref|YP_007416756.1| hypothetical protein CU7111_0919 [Corynebacterium urealyticum DSM
7111]
gi|226696033|sp|B1VDJ5.1|Y933_CORU7 RecName: Full=Probable transcriptional regulatory protein cu0933
gi|171851917|emb|CAQ04893.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
7109]
gi|448277088|gb|AGE36512.1| hypothetical protein CU7111_0919 [Corynebacterium urealyticum DSM
7111]
Length = 251
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 124/243 (51%), Gaps = 28/243 (11%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+RK++ I K + R VK GG +P +N L + KAK+ VP D +ER
Sbjct: 11 KRKKAAIDAKRGKEFARLVKNIEVAARMGGGDPDANPTLQDAITKAKKSSVPNDNIERAR 70
Query: 55 KRAS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR S E G + +YE YG GGV++++E LTD R+ VR + GG MAD GS
Sbjct: 71 KRGSGEEAGGSDWETIMYEGYGPGGVAMLIECLTDNRNRAATDVRTAMTKNGGNMADAGS 130
Query: 113 VMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
V ++F R + + +D LL LDAGAE+V +D E++ + S
Sbjct: 131 VSYQFERKGQALLDKGELTEDDLLLAVLDAGAEEV-----------KDHGEQFEVLCDIS 179
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKE---LIAKLLELDDVDAV 229
D + L+EAGI +++ E + + +EV +A EL ++ LI L ++DDV +
Sbjct: 180 D-LMGVREALKEAGIEYDS---VEQVYRSNLEVPADA-ELARKVANLIDALDDVDDVQEI 234
Query: 230 YTD 232
YT+
Sbjct: 235 YTN 237
>gi|167766632|ref|ZP_02438685.1| hypothetical protein CLOSS21_01138 [Clostridium sp. SS2/1]
gi|317499464|ref|ZP_07957730.1| hypothetical protein HMPREF0996_02714 [Lachnospiraceae bacterium
5_1_63FAA]
gi|429762165|ref|ZP_19294568.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerostipes
hadrus DSM 3319]
gi|167711755|gb|EDS22334.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium sp.
SS2/1]
gi|291558650|emb|CBL37450.1| conserved hypothetical protein TIGR01033 [butyrate-producing
bacterium SSC/2]
gi|316893238|gb|EFV15454.1| hypothetical protein HMPREF0996_02714 [Lachnospiraceae bacterium
5_1_63FAA]
gi|429182250|gb|EKY23368.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerostipes
hadrus DSM 3319]
Length = 242
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK ++P D +ER IK+A+ E++ YE YG GV
Sbjct: 36 VKEGGPDPDNNSRLRDVIAKAKANNMPNDTIERGIKKAAGDADSVNYEQITYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ + VR G + PG V + F + +++ + + D D L+
Sbjct: 96 AIIVDTLTDNKNRTASNVRNAFTKGNGNVGTPGCVSYMFEKKGQIIISKEECEMDADDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ALDAGAED E EDD+ ++V++T ++++ + L + IP D
Sbjct: 156 MMALDAGAEDFNE----EDDS--------FEVLTTPEDFSAVREALEKEEIPM-ADASVT 202
Query: 197 LLPITTIEVDDE 208
++P T +E+ E
Sbjct: 203 MIPGTMVELTSE 214
>gi|146300315|ref|YP_001194906.1| hypothetical protein Fjoh_2560 [Flavobacterium johnsoniae UW101]
gi|189039858|sp|A5FGS7.1|Y2560_FLAJ1 RecName: Full=Probable transcriptional regulatory protein Fjoh_2560
gi|146154733|gb|ABQ05587.1| protein of unknown function DUF28 [Flavobacterium johnsoniae UW101]
Length = 237
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 115/232 (49%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGPNP +N+ L AV++ AK ++PKD VER IK AS
Sbjct: 13 MKRWSAMAKTFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMPKDNVERAIKNAS 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
K + E ++E Y G++I++E +D R+VA +R C G M GSV F F
Sbjct: 73 NKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGTMGTQGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V E DED Y S + +
Sbjct: 133 HTCNFRIAKDGIDAEELELELIDFGAEEVFE--------DEDGILIYAPFGS----FGAL 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L G+ +G E +P T E+ + + ++LI K+ E DDV VY
Sbjct: 181 QKELENRGLEI-LSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDVMNVY 231
>gi|420161409|ref|ZP_14668174.1| protein of hypothetical function DUF28 [Weissella koreensis KCTC
3621]
gi|420161546|ref|ZP_14668310.1| protein of hypothetical function DUF28 [Weissella koreensis KCTC
3621]
gi|394745084|gb|EJF33980.1| protein of hypothetical function DUF28 [Weissella koreensis KCTC
3621]
gi|394745386|gb|EJF34270.1| protein of hypothetical function DUF28 [Weissella koreensis KCTC
3621]
Length = 241
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 31/223 (13%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V+EKAK ++PKD V+R + +AS G + E YE YG G++
Sbjct: 36 AKSGGVDPDGNPGLRLVMEKAKAANMPKDNVQRALDKASGAGGANYQELTYEGYGPAGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDA---DKDQL 135
++VE LTD R+ + VR K GG++ GSV F+F R + I + DA D+DQL
Sbjct: 96 VLVETLTDNTNRTASNVRSAFKHAGGELGTSGSVAFQFERKGYIEIARGEDAPEIDEDQL 155
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
+ L+AGA+D+ T +D+ +++ + + ++ L G D
Sbjct: 156 FEDMLEAGADDM--------KTYDDQ----FEIYTDPKVFPEVRDALESKGYTLINDE-- 201
Query: 196 ELLPITTIEVDDEAMEL---NKELIAKLLEL----DDVDAVYT 231
+T I D ME+ N E +AKL+E DDV AV+T
Sbjct: 202 ----VTMIA--DNPMEVPEDNAESLAKLVEELEADDDVSAVFT 238
>gi|227877248|ref|ZP_03995321.1| protein of hypothetical function DUF28 [Lactobacillus crispatus
JV-V01]
gi|256842811|ref|ZP_05548299.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256848890|ref|ZP_05554324.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262045778|ref|ZP_06018742.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|293380454|ref|ZP_06626521.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
crispatus 214-1]
gi|312977668|ref|ZP_07789415.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05]
gi|423317883|ref|ZP_17295780.1| UPF0082 protein [Lactobacillus crispatus FB049-03]
gi|423321219|ref|ZP_17299091.1| UPF0082 protein [Lactobacillus crispatus FB077-07]
gi|227863104|gb|EEJ70550.1| protein of hypothetical function DUF28 [Lactobacillus crispatus
JV-V01]
gi|256614231|gb|EEU19432.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256714429|gb|EEU29416.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260573737|gb|EEX30293.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|290922961|gb|EFD99896.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
crispatus 214-1]
gi|310895407|gb|EFQ44474.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05]
gi|405596542|gb|EKB69878.1| UPF0082 protein [Lactobacillus crispatus FB077-07]
gi|405597470|gb|EKB70739.1| UPF0082 protein [Lactobacillus crispatus FB049-03]
Length = 242
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L V++KA+ ++PKD ++R IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRAIKKAEGGSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
+ VE LTD R+ + VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VFVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ DD Y++ + + + L + G D +
Sbjct: 156 DVMDAGGDDL----QTSDDA--------YEIYTDPKQFAGVRDALIKDGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E + L+ L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>gi|414175519|ref|ZP_11429923.1| UPF0082 protein [Afipia broomeae ATCC 49717]
gi|410889348|gb|EKS37151.1| UPF0082 protein [Afipia broomeae ATCC 49717]
Length = 248
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L + A+ +VPKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRLAITAARAENVPKDNIERAIKKAIGNDGENYDEMRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R V+ A D +L+ A
Sbjct: 96 VIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRVGVIEYDAKVASDDAMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV +E ++V ++ + + ++ L F + L+
Sbjct: 156 IEAGADDVAS------------SEDGHEVYASPETFREVAKGLE---AKFGEARKAALIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TI VDDE E +L+ L E DDV VY +
Sbjct: 201 KPQNTIAVDDETGEKLFKLLDLLNEHDDVQNVYAN 235
>gi|378952514|ref|YP_005210002.1| hypothetical protein PSF113_4618 [Pseudomonas fluorescens F113]
gi|359762528|gb|AEV64607.1| Hypothetical protein PSF113_4618 [Pseudomonas fluorescens F113]
Length = 248
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 18/236 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + ++GG +P SN L L+KA ++ +DI++R I R
Sbjct: 14 KERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAIARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+++VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGATEADNVEELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ D+D L + AL+A A+DV+ +ED + + V ++ ++
Sbjct: 134 FERKGQISFA-PGLDEDALTEAALEADADDVVS---HEDGS--------FDVFTSFASFY 181
Query: 177 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L AG D + P T+ E+D + E +LI L +LDDV VY++
Sbjct: 182 AVRNALEAAGFK-PADAEIVMQPTTSAELDLDGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|150397839|ref|YP_001328306.1| hypothetical protein Smed_2641 [Sinorhizobium medicae WSM419]
gi|166228418|sp|A6UCU1.1|Y2641_SINMW RecName: Full=Probable transcriptional regulatory protein Smed_2641
gi|150029354|gb|ABR61471.1| protein of unknown function DUF28 [Sinorhizobium medicae WSM419]
Length = 248
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 19/238 (7%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q +R R + K G P+P N L ++ AK +PKD +ER +
Sbjct: 11 MHRKGRQDAVRSKMFSKLAREITVAAKAGLPDPAMNPRLRLAIQNAKAQSMPKDNIERAV 70
Query: 55 KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
K+A+ E + E YE YG GV+++VE LTD R+ + VR + GG + + GSV
Sbjct: 71 KKAAGGDAETYEEVRYEGYGPAGVAVIVEALTDNRNRTASNVRSIFTKAGGALGETGSVS 130
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F F R + K + D D +++ A++AGA+DV +TDE+ + + ++
Sbjct: 131 FSFDRVGEITYKLSVGDADTVMEAAIEAGADDV--------ETDEEG----HTITCGFED 178
Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ L A ET + P T+ VD+E + +LI L + DDV VY++
Sbjct: 179 IGEVSKALEGALGEAETVK-AVWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSN 235
>gi|302527855|ref|ZP_07280197.1| UPF0082 protein [Streptomyces sp. AA4]
gi|302436750|gb|EFL08566.1| UPF0082 protein [Streptomyces sp. AA4]
Length = 251
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 110/207 (53%), Gaps = 19/207 (9%)
Query: 30 NTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSIVVEVLTD 87
N L ++KAK+ VP+D +ER KR + E G + YE YG GV++++E LTD
Sbjct: 48 NPTLYDAIQKAKKNSVPQDNIERARKRGAGEEAGGADWQTITYEGYGPNGVAVLIECLTD 107
Query: 88 KITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDV 147
R+ VR + G +ADPGSV + F R VV + DA +D +L LDAGAE+V
Sbjct: 108 NKNRAAMEVRTALTRNNGSLADPGSVAYMFNRKGVVIMPKGDATEDDVLMAVLDAGAEEV 167
Query: 148 IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL--LPITTIEV 205
+D DE+ +++VS + + L+EAG +E+ +EL LP ++ +
Sbjct: 168 -------NDLDEN-----FEIVSEGTDLVPVRKALQEAGFEYES---AELTFLPSVSVPL 212
Query: 206 DDEAMELNKELIAKLLELDDVDAVYTD 232
D E + +LI L + DDV VY +
Sbjct: 213 DVEGAKKVFKLIDALEDCDDVQNVYAN 239
>gi|158520388|ref|YP_001528258.1| hypothetical protein Dole_0371 [Desulfococcus oleovorans Hxd3]
gi|226705841|sp|A8ZT17.1|Y371_DESOH RecName: Full=Probable transcriptional regulatory protein Dole_0371
gi|158509214|gb|ABW66181.1| protein of unknown function DUF28 [Desulfococcus oleovorans Hxd3]
Length = 246
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 115/214 (53%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
+ GG +P N L + AK+ ++PKD +ER IK+ + + + E YE YG GG
Sbjct: 36 ARTGGGDPDGNPRLRTAIAAAKDENMPKDNIERAIKKGTGDLEGVNYEENTYEGYGPGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+V+ +R + G M + G V + F + + ++ + A++D L+++
Sbjct: 96 AVLVESLTDNKNRAVSEIRHIFSKHNGNMGENGCVAWMFDKKGYIEVEKSAAEEDHLMEV 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A++AGAEDV E DDT ++V++ ++ + L A I + + +L
Sbjct: 156 AIEAGAEDVRES----DDT--------FEVITEVEDLETVRQALDGASIQYAFAEIT-ML 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T +++DD+ E L+ L + +DV VYT+
Sbjct: 203 PQTMVDLDDKTSEQMIRLLDALDDCEDVQKVYTN 236
>gi|15639465|ref|NP_218915.1| hypothetical protein TP0474 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025705|ref|YP_001933477.1| hypothetical protein TPASS_0474 [Treponema pallidum subsp. pallidum
SS14]
gi|338706436|ref|YP_004673204.1| hypothetical protein TPCCA_0474 [Treponema paraluiscuniculi
Cuniculi A]
gi|378972981|ref|YP_005221585.1| hypothetical protein TPESAMD_0474 [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378974048|ref|YP_005222654.1| hypothetical protein TPEGAU_0474 [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|378975109|ref|YP_005223717.1| hypothetical protein TPADAL_0474 [Treponema pallidum subsp.
pallidum DAL-1]
gi|378981957|ref|YP_005230262.1| hypothetical protein TPECDC2_0474 [Treponema pallidum subsp.
pertenue str. CDC2]
gi|384421991|ref|YP_005631350.1| hypothetical protein TPChic_0474 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502348|ref|YP_006869792.1| hypothetical protein TPAMA_0474 [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|6226380|sp|O83487.1|Y474_TREPA RecName: Full=Probable transcriptional regulatory protein TP_0474
gi|226706230|sp|B2S369.1|Y474_TREPS RecName: Full=Probable transcriptional regulatory protein
TPASS_0474
gi|3322762|gb|AAC65461.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018280|gb|ACD70898.1| hypothetical protein TPASS_0474 [Treponema pallidum subsp. pallidum
SS14]
gi|291059857|gb|ADD72592.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Chicago]
gi|335344497|gb|AEH40413.1| conserved hypothetical protein [Treponema paraluiscuniculi Cuniculi
A]
gi|374677304|gb|AEZ57597.1| hypothetical protein TPESAMD_0474 [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374678374|gb|AEZ58666.1| hypothetical protein TPECDC2_0474 [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374679443|gb|AEZ59734.1| hypothetical protein TPEGAU_0474 [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|374680507|gb|AEZ60797.1| hypothetical protein TPADAL_0474 [Treponema pallidum subsp.
pallidum DAL-1]
gi|408475711|gb|AFU66476.1| hypothetical protein TPAMA_0474 [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 245
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ G +P +N L + KA+ ++PKD +ER IK+ + E ++ E VYE Y GGV
Sbjct: 36 ARMAGGDPQANPRLRTAILKARAANMPKDNIERAIKKGTGELSGSSYEELVYEGYAPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VEVLTD R+ A VR + GG + GSV + F R V+ D++ L+++
Sbjct: 96 AVLVEVLTDNKNRAAANVRNLFSRNGGNLGSAGSVSYMFNRKGVIEYDSEQVDEEALMEL 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET-DNGSEL 197
AL+AGAED+ A V + + + L+ G +E+ G +
Sbjct: 156 ALEAGAEDI------------QNAGGVLTVTTVPGTFETVLESLQAKG--WESLSAGISM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T + +D+E ++I +L E +DV AVY++
Sbjct: 202 VPDTYLALDEETARKVLKMIDRLEEEEDVQAVYSN 236
>gi|295692599|ref|YP_003601209.1| hypothetical protein LCRIS_00737 [Lactobacillus crispatus ST1]
gi|295030705|emb|CBL50184.1| UPF0082 protein [Lactobacillus crispatus ST1]
Length = 242
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L V++KA+ ++PKD ++R IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRAIKKAEGGSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
+ VE LTD R+ + VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VFVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ DD Y++ + + + L + G D +
Sbjct: 156 DVMDAGGDDL----QTSDDA--------YEIYTDPKQFAGVRDALIKDGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E + L+ L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>gi|227872692|ref|ZP_03991022.1| protein of hypothetical function DUF28 [Oribacterium sinus F0268]
gi|227841506|gb|EEJ51806.1| protein of hypothetical function DUF28 [Oribacterium sinus F0268]
Length = 246
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 22/221 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P SN+ L V+ KAK ++P D ++ IKRA+ E++ YE YG GV
Sbjct: 36 VKQGGADPASNSKLKDVIAKAKANNMPNDTIQNGIKRAAGALDTVNFEELQYEGYGVNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVV----NIKFTDADKD 133
+I+V+VLTD RS A VR G + GSV F F + +++ ++ D +
Sbjct: 96 AIIVKVLTDNKNRSAADVRSAFTKGKGSLGSQGSVSFLFEEKGQIILDKEEMEDLGHDAE 155
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETD 192
L+D+A+ AGAED++E DD YY++++ ++ + KL + +P E D
Sbjct: 156 ALMDMAIMAGAEDLLE----RDD--------YYEILTDPGEFSSVREKLEQENLPMAEAD 203
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVYTD 232
++P T+ V DE N LL+ DDV VYT+
Sbjct: 204 --VVMIPGNTVSVTDEEAVKNLRKTLDLLDASDDVQNVYTN 242
>gi|326329834|ref|ZP_08196154.1| hypothetical protein NBCG_01267 [Nocardioidaceae bacterium Broad-1]
gi|325952420|gb|EGD44440.1| hypothetical protein NBCG_01267 [Nocardioidaceae bacterium Broad-1]
Length = 255
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 24/221 (10%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE--AFIEKVYEVYGYGGV 78
K GGP+P N L ++KAK+ VP D ++R +KR ++ +YEVYG GV
Sbjct: 37 KTGGPDPAGNPTLYDAIQKAKKQSVPNDNIDRAVKRGGGLDGGGVSYDTIMYEVYGPQGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK----DQ 134
++++E LTD R+ VR V GG MADPGSV F R VV + K D
Sbjct: 97 ALLIECLTDNRNRAAMEVRTAVTRNGGTMADPGSVSRLFDRKGVVVVAKAQEGKTITEDD 156
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
LL+ LDAGAEDV D E +++VS + + T L++AGI +++
Sbjct: 157 LLEATLDAGAEDV-----------NDLGES-FEIVSDPSDVVAVRTALQDAGIDYDS--- 201
Query: 195 SELLPITTIEV---DDEAMELNKELIAKLLELDDVDAVYTD 232
+E+ + ++++ D + E +LI + +LDDV V+++
Sbjct: 202 AEVQFVASMDIPVADASSAEKVFKLIDAVDDLDDVQNVFSN 242
>gi|408676840|ref|YP_006876667.1| hypothetical protein SVEN_1121 [Streptomyces venezuelae ATCC 10712]
gi|328881169|emb|CCA54408.1| hypothetical protein SVEN_1121 [Streptomyces venezuelae ATCC 10712]
Length = 250
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RTGGADLDGNPTLFDAVQKAKKQSVPNKNIDSALKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R V+ + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVILLPKAELSEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V D+ D ++++S + + + T L+EAGI +++ S +
Sbjct: 157 VLDAGAEEV------NDNGDT------WEIISEATDLVAVRTALQEAGIDYDSAE-SSFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|442314283|ref|YP_007355586.1| hypothetical protein G148_0588 [Riemerella anatipestifer RA-CH-2]
gi|441483206|gb|AGC39892.1| hypothetical protein G148_0588 [Riemerella anatipestifer RA-CH-2]
Length = 234
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P SN L ++ AK ++PKD VER IK+AS E + E YE YG GGV+
Sbjct: 22 VKAGGPDPDSNPALRRCIQNAKGANMPKDNVERAIKKASGADAENYEEITYEGYGQGGVA 81
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK--FTDADKDQLLD 137
VE T+ TR+VA VR + G + G + F F R + ++ D ++
Sbjct: 82 FFVECTTNNSTRTVANVRAIFNKFDGNLGKNGELSFLFDRKGIFTLEKSLIKMDWEEFEM 141
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
+D GAED ++ DDT+ V + +++ ++ KL E GI E N +
Sbjct: 142 EMIDGGAED-----IDSDDTE-------VMVTTAFEDFGPLSHKLDELGI--EVKNAELQ 187
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P + V +E N +++ + E DDV VY +
Sbjct: 188 RIPNISKSVSEEQFIANMKMLQRFEEDDDVQNVYHN 223
>gi|418752288|ref|ZP_13308557.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
santarosai str. MOR084]
gi|409967357|gb|EKO35185.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
santarosai str. MOR084]
gi|456873375|gb|EMF88750.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira
santarosai str. ST188]
Length = 249
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 115/213 (53%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER I++ + E + E +YE +G G++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIRKGTGELEGIVYEECLYECFGPAGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDELVDLA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE + Y+V++T +NY + L E G+ E +
Sbjct: 157 VGEGAEDVI----NEGEV--------YRVITTPENYESVLHSLNEKGLKSEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
I++ D E E +LI +L DDV +V ++
Sbjct: 205 ISSEIADKEVAEKVMKLIDQLDGHDDVTSVTSN 237
>gi|387130674|ref|YP_006293564.1| YebC/PmpR family DNA-binding regulatory protein [Methylophaga sp.
JAM7]
gi|386271963|gb|AFJ02877.1| DNA-binding regulatory protein, YebC/PmpR family [Methylophaga sp.
JAM7]
Length = 249
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
+ GG +P SN L A ++KA ++ KD++ER KR A E A+ E YE YG G+
Sbjct: 36 ARMGGSDPASNPRLRAAIDKALGSNMTKDVIERASKRGAGELEGVAYEEVRYEGYGPNGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V+ +TD R+VA VR V GG M G V F F + +++ TD ++D ++++
Sbjct: 96 AIMVDCMTDNRNRTVAEVRHVFTKRGGNMGTDGCVAFMFNQKGIISFA-TDVEEDDIMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED++ N+D + V + ++Y + L AG ++ + +
Sbjct: 155 ALEAGAEDIV---TNDDGS--------IDVFTPPEDYAAVKDALDNAGFSAQSAEVT-MH 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ ++ + + LI ELDDV VY++
Sbjct: 203 PDNTVSLELDDAQKAIALIEAFEELDDVQQVYSN 236
>gi|335048670|ref|ZP_08541690.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas sp.
oral taxon 110 str. F0139]
gi|333758470|gb|EGL36028.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas sp.
oral taxon 110 str. F0139]
Length = 247
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P N L +EKAK ++P D +ER +K+A+ G + E + YE YG G+
Sbjct: 36 VKEGGADPEYNPALKTAIEKAKAENMPNDNIERALKKAAGDGDASNYETIIYEGYGPEGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++VVE LTD R+ A VR GG + GSV+F F + VV I A++D L+D
Sbjct: 96 AVVVECLTDNRNRTAADVRHAFDKHGGNLGQNGSVLFMFEKKGVVVISKDQAEEDDLMDF 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+ GA D + + Y + S ++ + L+E G F + E +
Sbjct: 156 ALENGASDF------------ESDDEVYTIYSEVSDFITLRDALQEKGYTFSACD-LEYV 202
Query: 199 PITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
P ++ + + ++ ++I +L + DDV VY +
Sbjct: 203 PSNNSQISNPDNIKKMVKMIDQLEDNDDVQNVYHN 237
>gi|402772572|ref|YP_006592109.1| hypothetical protein BN69_2007 [Methylocystis sp. SC2]
gi|401774592|emb|CCJ07458.1| Conserved hypothetical protein [Methylocystis sp. SC2]
Length = 248
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 21/235 (8%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
KQ IR R + K G P+P N L A + A+ ++PKD +ER IK+AS
Sbjct: 16 KQDAIRSKLFSKLAREITVAAKMGLPDPNMNARLRAAVLAARAENMPKDNIERAIKKASG 75
Query: 60 KGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
E + E YE Y GGV++++E LTD R+ VR GG +A+ G+V F F R
Sbjct: 76 ADAENYDEVRYEGYAPGGVAVIIEALTDNRNRTAGEVRSYFTKAGGALAETGAVSFMFDR 135
Query: 120 ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
+V A +D +++ A+DAGA+DV TDE ++V+++ ++ D+
Sbjct: 136 VGLVEFDKKAATEDAMMEAAIDAGADDV-------STTDE-----AHEVITSVESLRDVA 183
Query: 180 TKLREAGIPFETDNGSELL--PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
L E F + L+ P TI+VDDE+ E +L+ L + DDV VY +
Sbjct: 184 RALEE---KFGEPRKAALVWRPQNTIKVDDESGEKILKLVGLLEDNDDVQNVYAN 235
>gi|350569320|ref|ZP_08937716.1| YebC like protein [Propionibacterium avidum ATCC 25577]
gi|348660138|gb|EGY76848.1| YebC like protein [Propionibacterium avidum ATCC 25577]
Length = 264
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 36/253 (14%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I K + R +K GG +P+ N L ++KAK+ VP D + R +
Sbjct: 11 KHKKAAIDAKRGKLFARLIKNIEVAARLGGGDPSGNPTLYDAIQKAKKSSVPNDNITRAV 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR S +G +A + +YE YG GV++++E LTD R+V+ VR V GG MAD GS
Sbjct: 71 KRGSGEGADAVNYETIMYEAYGPAGVAVLIECLTDNRNRAVSDVRVAVTRNGGTMADGGS 130
Query: 113 VMFKFRRARVVNIKFT------------DADKDQLLDIALDAGAEDVIEPPVNEDDTDED 160
V F+R VV + T + D+DQL++ +DA ED++ DD D
Sbjct: 131 VQRLFQRKGVVAVSKTYEVEEGRKTETREVDEDQLMEATIDAEPEDIV------DDGD-- 182
Query: 161 RAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITT-IEVDDEAMELNKELIAK 219
++++S + D+ +++AGI +++ S T +E+DD A +L K L A
Sbjct: 183 ----VFEIISDPNAVVDVRKAVQDAGIDYDSAEVSFKPDFTQPVELDD-ARKLYKILDA- 236
Query: 220 LLELDDVDAVYTD 232
L +LDDV V+++
Sbjct: 237 LEDLDDVQNVFSN 249
>gi|336178462|ref|YP_004583837.1| hypothetical protein [Frankia symbiont of Datisca glomerata]
gi|334859442|gb|AEH09916.1| UPF0082 protein yeeN [Frankia symbiont of Datisca glomerata]
Length = 251
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 111/213 (52%), Gaps = 16/213 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK--GQEAFIEKVYEVYGYGGV 78
K GG +P N LA + KAK VP D ++R +KR S + G ++ E YE Y GV
Sbjct: 37 KTGGGDPAGNPTLADAIAKAKSQSVPNDNIDRAVKRGSGELAGGASYEEITYEAYAPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
+++VE LTD R+ + VR + GG +ADPGSV + F R VV + K + +D +L
Sbjct: 97 AVLVECLTDNRNRAASDVRVAITRNGGSVADPGSVSYLFNRKGVVLVTKTPELGEDDVLT 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LD GAE+V D D ++VVS + + + +AG+ + + S
Sbjct: 157 AVLDVGAEEV------NDLGDA------FEVVSEATDLNAVRVAATDAGLTVASADLS-W 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
LP ++ +D+EA +L+ L +LDDV V+
Sbjct: 204 LPSVSVPLDEEAARKVLKLVEALEDLDDVQNVW 236
>gi|414073536|ref|YP_006998753.1| hypothetical protein uc509_0234 [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413973456|gb|AFW90920.1| hypothetical protein uc509_0234 [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 238
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K+G P+P SN+ L V+E+AK+ VPK ++++ I +A G E F++ YE +G G +
Sbjct: 35 KQGEPDPESNSSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMV 94
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+ E LT + R++A VR GG + G+V + F V I F D D + +I L
Sbjct: 95 ITETLTSNVNRTIANVRTTFHKNGGNIGAAGAVSYMFDNTGV--IVFEGTDPDHIFEIML 152
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVST--SDNYTDITTKLREAGIPFETDNGSELL 198
DA E D + E VV T +D + I L+EAGI + E++
Sbjct: 153 DA-----------EVDVRDVTEEEGNIVVYTEPTDLHKGIAA-LKEAGITEFSTTELEMI 200
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + +E+ E +E+ + LI L + DDV VY +
Sbjct: 201 PQSEVELSPEDLEIFEGLIDALEDDDDVQKVYHN 234
>gi|358067471|ref|ZP_09153950.1| hypothetical protein HMPREF9333_00831 [Johnsonella ignava ATCC
51276]
gi|356694387|gb|EHI56049.1| hypothetical protein HMPREF9333_00831 [Johnsonella ignava ATCC
51276]
Length = 242
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGP+P +N+ L V+ KAK +VP D +ER IK+A+ + + YE YG GV
Sbjct: 36 VKEGGPDPNNNSKLRDVIAKAKANNVPNDTIERGIKKAAGDVSAVNYEHNTYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+VE LTD R+ A VR G + G V + F + +++ D + D+L+
Sbjct: 96 AIIVETLTDNKNRTAANVRSAFTKGCGNVGAQGCVSYMFDKKGQIIIDKSEVDMETDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ LD GA+D I EDD+ Y+++++ D++ + + +AGIP D
Sbjct: 156 LLVLDMGADDFIV----EDDS--------YEILTSPDDFGAVREAVEKAGIPM-VDAEIT 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLEL-DDVDAVY 230
++P + + DE N I +LL DDV AVY
Sbjct: 203 MIPQNKVVLSDENDIKNMNRIIELLNAEDDVQAVY 237
>gi|365896737|ref|ZP_09434795.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
gi|365422506|emb|CCE07337.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
Length = 248
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 27/221 (12%)
Query: 19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGV 78
+ K G P+P N L A + A+ ++PKD +ER IK+A + + E YE YG GGV
Sbjct: 35 SAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERAIKKALGGEGDNYDEIRYEGYGPGGV 94
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + +R GG + + GSV F F R ++ + A D +LD
Sbjct: 95 AVIVEALTDNRNRAASDIRSYFTKSGGNLGETGSVSFMFDRVGIIEYDSSVASDDTMLDA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFET 191
A++AGA+DV+ +E +++ ++ +N+ ++ L R+A + ++
Sbjct: 155 AIEAGADDVMS------------SESGHEIYASPENFREVAKNLEAKFGEPRKAALTWK- 201
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L E DDV VY +
Sbjct: 202 -------PQNTVAVDDETGEKLLKLMDLLNEHDDVQNVYAN 235
>gi|258545754|ref|ZP_05705988.1| YebC protein of hypothetical function DUF28 [Cardiobacterium
hominis ATCC 15826]
gi|258518999|gb|EEV87858.1| YebC protein of hypothetical function DUF28 [Cardiobacterium
hominis ATCC 15826]
Length = 244
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 117/215 (54%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GG + +SN L + KA+ ++ KD +ER IKR + + + A +E++ YE YG GGV
Sbjct: 36 ARHGGSDASSNPRLRLAIAKAQAENMTKDTMERAIKRGAGELEGAQMEEIRYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ LTD R+V VR GG + GSV F+F V+ + A++D +++
Sbjct: 96 AVMVDCLTDNKNRTVGEVRHAFTKAGGNLGTSGSVAFQFTERGVLFFEKV-ANEDAFMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSEL 197
ALDAGA D+ + DE+ AE V++ ++Y + L AG P E++
Sbjct: 155 ALDAGAADL--------EIDENGAE----VLTAPEDYAAVYDALVAAGFTPDESEVTMRA 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ + DD + LI +L ELDDV +VYT+
Sbjct: 203 DNLSPVSADDADKVMR--LIERLEELDDVQSVYTN 235
>gi|225849643|ref|YP_002729877.1| hypothetical protein PERMA_0079 [Persephonella marina EX-H1]
gi|254799888|sp|C0QT62.1|Y079_PERMH RecName: Full=Probable transcriptional regulatory protein
PERMA_0079
gi|225645009|gb|ACO03195.1| conserved hypothetical protein [Persephonella marina EX-H1]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 117/217 (53%), Gaps = 20/217 (9%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
++GG +P N L +EKAK+ ++P + +ER IKR + E ++ E VYE YG GV+
Sbjct: 37 RQGGGDPEFNPRLRIAIEKAKKANMPVENIERAIKRGTGELEGVSYEEVVYEGYGPEGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE LTD R+ VR + GG + G V F F V+ + D++ + + A
Sbjct: 97 IIVECLTDNRNRTTGEVRHIFTKHGGNLGSSGCVSFLFEEKGVILVPKDKYDEETVFEKA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL-- 197
++AGAEDVI TD+ E +Y++ + + L + GI E +EL
Sbjct: 157 IEAGAEDVI--------TDD---EEFYEIRTEPKELYTVKENLEKEGIEIEK---AELTR 202
Query: 198 LPITTIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
+P TT+E++DE A +L K L+ L + DDV VY++
Sbjct: 203 IPTTTVEINDEETATKLMK-LLDALEDNDDVQKVYSN 238
>gi|325106526|ref|YP_004276180.1| hypothetical protein [Pedobacter saltans DSM 12145]
gi|324975374|gb|ADY54358.1| protein of unknown function DUF28 [Pedobacter saltans DSM 12145]
Length = 241
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 120/239 (50%), Gaps = 17/239 (7%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK+ + W + K + VK+GGP+P +N+ L ++ AK +++PKD VE
Sbjct: 8 RKERKFKRWAKMAVQFTRIGKDIVIAVKEGGPHPENNSRLRTAIQNAKAVNMPKDRVEAA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRAS+K + E VYE YG GV+++VE TD R+VA VR G + GS+
Sbjct: 68 IKRASDKSTANYDEVVYEGYGPNGVAVLVETATDNTNRTVANVRSYFNKSNGTLGKTGSL 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F+R D D ++L +D G E++ V D+ D A + + +
Sbjct: 128 DFIFKRVSTFRFAPGDLDLEELELELIDFGLEEIY---VEADEEGNDLA----VIHAGFE 180
Query: 174 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ + L E GI + E +P++ EV++E +L+ KL E DDV AVY +
Sbjct: 181 DFGKMQKALEEKGIEIKQAK-LERIPLSYAEVNEEQAADIMKLLDKLEEDDDVQAVYHN 238
>gi|323339448|ref|ZP_08079729.1| glucose-1-phosphate adenylyl transferase [Lactobacillus ruminis
ATCC 25644]
gi|417972860|ref|ZP_12613745.1| hypothetical protein ANHS_427 [Lactobacillus ruminis ATCC 25644]
gi|323093121|gb|EFZ35712.1| glucose-1-phosphate adenylyl transferase [Lactobacillus ruminis
ATCC 25644]
gi|346330766|gb|EGX99000.1| hypothetical protein ANHS_427 [Lactobacillus ruminis ATCC 25644]
Length = 243
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 113/215 (52%), Gaps = 18/215 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P +N L V++KA+ ++PKD ++R + +A+ + E YE YG GV+
Sbjct: 36 AKSGGPDPDANPQLRLVMDKARAANMPKDNIKRALDKATGANGANYEEITYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
I+V LTD R+ +AVR GG + + GSV F F R + I + D D+D +L+
Sbjct: 96 ILVHALTDNRNRTASAVRADFNRNGGNLGETGSVAFMFDRKGYIAIAREDLDVDEDAMLE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
AL+AGA+D+ +E +++ + + D+ +L+ ++ D
Sbjct: 156 DALNAGADDL------------QASEEVFEIYTDPQAFEDVRNELQNK---YDLDTAEIT 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T+ V + +E + LI +L + DDV V+T
Sbjct: 201 MVPQNTVPVPADKVEQLQRLIDRLEDEDDVSEVFT 235
>gi|456386003|gb|EMF51556.1| hypothetical protein SBD_7261 [Streptomyces bottropensis ATCC
25435]
Length = 235
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 22 RMGGVDIEGNPTLYDAIQKAKKQSVPNKNIDSAVKRGGGLEAGGADYETIMYEGYGPNGV 81
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L++
Sbjct: 82 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELSEDDVLEV 141
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+EAGI +++ + +
Sbjct: 142 VLDAGAEEV-------NDLGE-----AFEVLSEATDMVAVRTSLQEAGIDYDSAE-ANFV 188
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 189 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 222
>gi|401565398|ref|ZP_10806236.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC6]
gi|400187147|gb|EJO21343.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC6]
Length = 242
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 27/221 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI RA +KG A + E +YE YG
Sbjct: 36 VRMGGGDPTGNMRLKLALSKAKANNIPKD----NINRAIQKGLGATEGSNYEEVLYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADK 132
GG ++++++LTD R+ A VR + GG + G V MFK + +V + D D+
Sbjct: 92 PGGTAVMLDILTDNRNRTAADVRHLFSKYGGNLGQDGCVAWMFKKKAVFIVEREAFD-DE 150
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
D LL+I L+AGAED+ EDD +++++ + + I T L E GI ET
Sbjct: 151 DALLEIVLEAGAEDMRA----EDDV--------FEIIAEPEAFEAIETVLGEKGI--ETA 196
Query: 193 NGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P TT+ + D+ E + LI L + DDV VY++
Sbjct: 197 SAEVTMVPDTTVHLADKDAEKMQTLIDALEDNDDVQNVYSN 237
>gi|192361730|ref|YP_001981524.1| hypothetical protein CJA_1028 [Cellvibrio japonicus Ueda107]
gi|190687895|gb|ACE85573.1| conserved hypothetical protein TIGR01033 [Cellvibrio japonicus
Ueda107]
Length = 247
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 16/213 (7%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGVSI 80
K G NP N L A +EKA ++ KD+VER I R + + E++ E YE YG GV+
Sbjct: 37 KNGANPDDNPRLRAAVEKAYLNNLKKDVVERAIARGAGTAESESYEELTYEGYGVNGVAF 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+VE +TD R+V VR GG + GSV + F R ++ + ++D L++ AL
Sbjct: 97 IVECMTDNRNRTVGDVRHAFDKRGGNLGTNGSVSYLFTRKGQISFE-PGFNEDALMEAAL 155
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSELLP 199
DAGA+DV+ +N D + + V++ +++ + + AG P D ++P
Sbjct: 156 DAGADDVV---INSDGSAD--------VMTAFEDFFAVKDAIIAAGFKPISAD--FAMVP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ +D +A E LI L +LDDV VYT+
Sbjct: 203 SVTVSLDKDAAEKIISLIDALEDLDDVQNVYTN 235
>gi|443673232|ref|ZP_21138301.1| putative uncharacterized protein [Rhodococcus sp. AW25M09]
gi|443414195|emb|CCQ16639.1| putative uncharacterized protein [Rhodococcus sp. AW25M09]
Length = 252
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 9 RGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQ 62
RG ++N+ + GG +P N L ++KAK+ VP D +ER KR + E G
Sbjct: 21 RGKSFAKLIKNIEVAARTGGGDPVGNPTLFDAIQKAKKTSVPIDNIERARKRGAGEETGG 80
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ +YE YG GV+I++E LTD R+ VR + GG MADPGSV + F R V
Sbjct: 81 ADWQTIMYEGYGPNGVAILIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVSYLFSRKGV 140
Query: 123 VNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL 182
V ++ +D +L L+ GAE+V D+ D ++VVS + + T L
Sbjct: 141 VTLEKNGQSEDDVLMAVLEVGAEEV------NDNGD------TFEVVSEPTDLVAVRTAL 188
Query: 183 REAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EAGI +++ S + VD + +LI L + DDV V+++
Sbjct: 189 QEAGIDYDSAEAS-FQASVNVPVDADGARKVFKLIDALEDSDDVQNVWSN 237
>gi|190893288|ref|YP_001979830.1| hypothetical protein RHECIAT_CH0003714 [Rhizobium etli CIAT 652]
gi|226705838|sp|B3PYY8.1|Y3714_RHIE6 RecName: Full=Probable transcriptional regulatory protein
RHECIAT_CH0003714
gi|190698567|gb|ACE92652.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 248
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+PT N L ++ AK +PKD ++R IK+A+ E + E YE YG GG +
Sbjct: 36 AKAGLPDPTMNARLRLAIQNAKAQSMPKDNIDRAIKKAAGADGENYDEVRYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE LTD R+ + VR + GG + + GSV F F + K + D D++++ A
Sbjct: 96 IIVEALTDNRNRTASNVRSIFTKAGGALGETGSVSFSFDHVGEITYKLSVGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGA+DV +TDE E +Y + + D++ L E+G+ +
Sbjct: 156 IEAGADDV--------ETDE---EGHY-ITCAFEALGDVSKAL-ESGLGEAETVKAVWRA 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD+E + +LI L + DDV VY++
Sbjct: 203 QNNVPVDEEKAQSLMKLIDSLEDDDDVQNVYSN 235
>gi|339634065|ref|YP_004725706.1| hypothetical protein WKK_00755 [Weissella koreensis KACC 15510]
gi|338853861|gb|AEJ23027.1| hypothetical protein WKK_00755 [Weissella koreensis KACC 15510]
Length = 241
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 31/223 (13%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L V+EKAK ++PKD V+R + +AS G + E YE YG G++
Sbjct: 36 AKSGGVDPDGNPGLRLVMEKAKAANMPKDNVQRALDKASGAGGANYQELTYEGYGPAGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDA---DKDQL 135
++VE LTD R+ + VR K GG++ GSV F+F R + I + DA D+DQL
Sbjct: 96 VLVETLTDNTNRTASNVRSAFKHAGGELGTSGSVAFQFERKGYIEIARGEDAPEIDEDQL 155
Query: 136 LDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS 195
+ L+AGA+D+ T +D+ +++ + + ++ L G D
Sbjct: 156 FEDMLEAGADDM--------KTYDDQ----FEIYTDPKVFPEVRDALEAKGYTLINDE-- 201
Query: 196 ELLPITTIEVDDEAMEL---NKELIAKLLEL----DDVDAVYT 231
+T I D ME+ N E +AKL+E DDV AV+T
Sbjct: 202 ----VTMIA--DNPMEVPEDNAESLAKLVEELEADDDVSAVFT 238
>gi|187478698|ref|YP_786722.1| hypothetical protein BAV2207 [Bordetella avium 197N]
gi|119372126|sp|Q2KYW0.1|Y2207_BORA1 RecName: Full=Probable transcriptional regulatory protein BAV2207
gi|115423284|emb|CAJ49817.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 243
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GG +P SN L +KA + ++PKD V+R I+R + E+V YE YG GG
Sbjct: 36 ARAGGADPDSNPRLRLAWDKATDANMPKDNVQRAIQRGAGGADGDNYEEVRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD TR+VA VR GG + GSV F F+ + + +D+++++
Sbjct: 96 AVIVDCMTDNRTRTVAEVRHAFAKNGGNLGQEGSVAFMFKHCGQF-LFAPGSSEDKVMEV 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
ALDAGAEDVI TD+ E +V+ +Y + AG+ E D
Sbjct: 155 ALDAGAEDVI--------TDD---EGGIEVICAPADYPALRQAFEAAGLKAEVDAVIMKA 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T D+A+++ K L+ L LDDV VYT+
Sbjct: 204 QSETELTGDDAIKMQK-LLDALEGLDDVQEVYTN 236
>gi|295695623|ref|YP_003588861.1| hypothetical protein [Kyrpidia tusciae DSM 2912]
gi|295411225|gb|ADG05717.1| protein of unknown function DUF28 [Kyrpidia tusciae DSM 2912]
Length = 247
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 26/239 (10%)
Query: 4 KQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
KQ +RG R + ++GG NP +N L +E+A+ ++P D ++R I +A+
Sbjct: 16 KQDAVRGQLFTKMSREIYAATRQGGSNPETNYRLKTAIERARAANMPMDSIQRTIDKAAG 75
Query: 60 KGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+ + E YE YG GG +++V++LTD R+ A +R + GG + + G V + F
Sbjct: 76 NVEGVNYEEMFYEGYGPGGAAVMVQLLTDNRNRTAAEIRHIFSKRGGSLGESGCVAWMFD 135
Query: 119 RARVVNIK---FTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNY 175
R V+ I F ++ D ++ AL+AGAED +EDR Y + +
Sbjct: 136 RKGVIEISREGFPGSEDDAMM-AALEAGAEDFT--------AEEDR----YVITVAPEQL 182
Query: 176 TDITTKLREAGIPFETDNGSE--LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ L +AG+P G+E +P TT+ ++ + + +L+ L E DDV V+++
Sbjct: 183 REVRENLEKAGVPIA---GAEVTFVPQTTVNLEGDEAQRMVDLLEALEEHDDVQNVFSN 238
>gi|395204766|ref|ZP_10395706.1| YebC like protein [Propionibacterium humerusii P08]
gi|422439444|ref|ZP_16516267.1| conserved hypothetical protein TIGR01033 [Propionibacterium acnes
HL037PA3]
gi|422470933|ref|ZP_16547433.1| conserved hypothetical protein TIGR01033 [Propionibacterium acnes
HL037PA2]
gi|422574237|ref|ZP_16649791.1| conserved hypothetical protein TIGR01033 [Propionibacterium acnes
HL044PA1]
gi|313837775|gb|EFS75489.1| conserved hypothetical protein TIGR01033 [Propionibacterium acnes
HL037PA2]
gi|314927343|gb|EFS91174.1| conserved hypothetical protein TIGR01033 [Propionibacterium acnes
HL044PA1]
gi|314972427|gb|EFT16524.1| conserved hypothetical protein TIGR01033 [Propionibacterium acnes
HL037PA3]
gi|328907428|gb|EGG27194.1| YebC like protein [Propionibacterium humerusii P08]
Length = 264
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 36/253 (14%)
Query: 2 QRKQSCIRGWGRKSYLRNVKK-------GGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
+ K++ I K + R +K GG +P+ N L ++KAK+ VP D + R +
Sbjct: 11 KHKKAAIDAKRGKLFARLIKNIEVAARLGGGDPSGNPTLYDAIQKAKKSSVPNDNIARAV 70
Query: 55 KRASEKGQEA--FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGS 112
KR S +G +A + +YE YG GV+I++E LTD R+V+ VR V GG MAD GS
Sbjct: 71 KRGSGEGADAVSYETIMYEAYGPAGVAILIECLTDNRNRAVSDVRVAVTRNGGTMADGGS 130
Query: 113 VMFKFRRARVVNIKFT------------DADKDQLLDIALDAGAEDVIEPPVNEDDTDED 160
V F+R VV++ T + D+DQL++ +DA ED++ D
Sbjct: 131 VQRLFQRKGVVSVSKTYEVEEGRKTETREVDEDQLMEATIDAEPEDIV-----------D 179
Query: 161 RAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITT-IEVDDEAMELNKELIAK 219
E ++++S + D+ +++AGI +++ S T +E+DD A +L K L A
Sbjct: 180 EGE-VFEIISDPNAVVDVRKAVQDAGIDYDSAEVSFKPDFTQPVELDD-ARKLYKILDA- 236
Query: 220 LLELDDVDAVYTD 232
L +LDDV V+++
Sbjct: 237 LEDLDDVQNVFSN 249
>gi|289422746|ref|ZP_06424586.1| DNA-binding regulatory protein, YebC/PmpR family
[Peptostreptococcus anaerobius 653-L]
gi|429728771|ref|ZP_19263475.1| DNA-binding regulatory protein, YebC/PmpR family
[Peptostreptococcus anaerobius VPI 4330]
gi|289156925|gb|EFD05550.1| DNA-binding regulatory protein, YebC/PmpR family
[Peptostreptococcus anaerobius 653-L]
gi|429147746|gb|EKX90768.1| DNA-binding regulatory protein, YebC/PmpR family
[Peptostreptococcus anaerobius VPI 4330]
Length = 241
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
++GG +P N L A + KAK ++P D ++R IK+ G E + YE YG GGV
Sbjct: 33 AREGGGDPEYNASLKAAIVKAKSDNMPNDNIDRAIKKGVGGGDGENYESITYEGYGAGGV 92
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+VE LTD R+ VR G + PG V F F R + I +A+++QL++
Sbjct: 93 AIIVETLTDNKNRTAGNVRYYFDKNNGNLGTPGCVSFMFDRKGQIFISNENAEEEQLMEE 152
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+ GAED I DED ++++++ +++ + L E G F + +LL
Sbjct: 153 ALELGAEDFI--------PDEDG----FEIITSPEDFNAVRDGLEEKGYEFVAAD-VKLL 199
Query: 199 PITTIEVDDEAM 210
P TT VDDE
Sbjct: 200 PQTTSVVDDEGQ 211
>gi|449126239|ref|ZP_21762532.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola OTK]
gi|448938431|gb|EMB19362.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola OTK]
Length = 247
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG +P +N L + KA+ ++PKD +ER IK+ + E G + E +YE YG GGV+
Sbjct: 37 KMGGGDPATNPRLRTAVLKARAANMPKDNIERAIKKGTGELGAVNYEELLYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VEVLTD R+ A+VR + GG + GSV + F R V+ ++ +++ A
Sbjct: 97 VLVEVLTDNKNRTAASVRNIFTKSGGNLGATGSVAYMFNRKGVIEYDAEVVSEEAIMEAA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-ELL 198
L+AGAED+ ED V + +++ + L+E G FE+ + + ++
Sbjct: 157 LEAGAEDI----ATEDGV--------ITVTTDPNDFASVLEALQEKG--FESVSAAVSMV 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T + +D + + ++I KL E DDV V ++
Sbjct: 203 PDTYVALDVDTTQKALKMIDKLEEDDDVQTVSSN 236
>gi|443633728|ref|ZP_21117905.1| hypothetical protein BSI_29820 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346522|gb|ELS60582.1| hypothetical protein BSI_29820 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 258
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G P+P SN L VLE+AK VPK+I+ER I++A +E F E Y
Sbjct: 45 FGREIYVA-AKQGEPDPESNQALKVVLERAKTYSVPKNIIERAIEKAKGGAEENFDELRY 103
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+V+ LT+ + R+ VR GG M GSV + F V+ ++ A
Sbjct: 104 EGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVEGKTA 163
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D+ + + D D++E EDD+ V + D + + + AG+
Sbjct: 164 DEALEILMEADVDVRDILE----EDDS--------VIVYAEPDQFHAVQEAFKNAGVEEF 211
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +L + + + D+A E ++LI L +L+DV VY +
Sbjct: 212 TVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLEDVQQVYHN 253
>gi|381152653|ref|ZP_09864522.1| DNA-binding regulatory protein, YebC/PmpR family [Methylomicrobium
album BG8]
gi|380884625|gb|EIC30502.1| DNA-binding regulatory protein, YebC/PmpR family [Methylomicrobium
album BG8]
Length = 249
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 114/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK GGP+ SN L ++KA ++ +D ++ IK+AS + E+V YE YG GG
Sbjct: 36 VKSGGPDAGSNPTLRTAIDKALGSNMRRDTIDNAIKKASGAQEGVNYEEVRYEGYGPGGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+V+ VR GG + GSV + F + +++ DAD+D L++
Sbjct: 96 AVMVECLTDNRNRTVSDVRHAFTKAGGNLGTDGSVAYLFTKTGMLSYA-EDADEDALMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGA DV V DD D V+++ ++Y + L AG F DN +
Sbjct: 155 ALEAGANDV----VTNDDGSID-------VMTSPEDYLAVKETLIAAG--FTPDNAEVTM 201
Query: 199 PITT-IEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+T E+ E E LI +L +LDDV VY++
Sbjct: 202 QASTQTELGPEDAEKMLRLIDRLEDLDDVQNVYSN 236
>gi|116333809|ref|YP_795336.1| hypothetical protein LVIS_1199 [Lactobacillus brevis ATCC 367]
gi|122269504|sp|Q03R67.1|Y1199_LACBA RecName: Full=Probable transcriptional regulatory protein LVIS_1199
gi|116099156|gb|ABJ64305.1| hypothetical protein LVIS_1199 [Lactobacillus brevis ATCC 367]
Length = 245
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L ++KA+ ++PK+ ++R + +AS G F E YE YG G +
Sbjct: 36 AKAGGPDPDGNPQLRLEMDKARAANMPKENIKRALDKASGVGGAKFEEITYEGYGPAGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
I+V LTD R+ AA+R GG + GSV + F R + I + D D+D +L
Sbjct: 96 IMVAALTDNKNRTAAAIRSAFTHHGGSLGAAGSVSYMFDRKGYIVILREDLDTDEDTMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ +T +D +K+ + + T + L+E G +T + +
Sbjct: 156 DALDAGADDM--------ETTDDA----FKIYTDPSSVTAVRDALQEKGYSLDTAE-ARM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P T EV + + LI +L + DDV +Y
Sbjct: 203 FPQNTTEVPEAKASQYQGLIDELEDNDDVSDIY 235
>gi|421859767|ref|ZP_16291963.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
gi|410830682|dbj|GAC42400.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
Length = 237
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 17/224 (7%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G PNP SN +L V+E+AK +VPK I++R I++A E + E Y
Sbjct: 26 FGREIYVA-AKQGEPNPESNQILKFVIERAKTYNVPKAIIDRAIEKAKGGSDENYDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G ++V+ LT+ + R+ + VR GG + GSV + F + V+ ++ A
Sbjct: 85 EGFGPNGTMVIVDALTNNVNRTASEVRAAFNKNGGSLGVSGSVTYMFDQTAVIGLEGKTA 144
Query: 131 DKDQLLDIALDAGAE--DVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP 188
+++L+I ++A + D++E ED A Y V D + + LREAG
Sbjct: 145 --EEVLEILMNADLDVRDILE---------EDEAVIIYAV---PDQFHAVQNALREAGTS 190
Query: 189 FETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +LP + + + ++ +LI L +LDDV VY +
Sbjct: 191 EFTVAELTMLPQSDVSLPEDVQAQFDKLIDALEDLDDVQQVYHN 234
>gi|389843525|ref|YP_006345605.1| YebC/PmpR family DNA-binding regulatory protein [Mesotoga prima
MesG1.Ag.4.2]
gi|387858271|gb|AFK06362.1| DNA-binding regulatory protein, YebC/PmpR family [Mesotoga prima
MesG1.Ag.4.2]
Length = 252
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 122/219 (55%), Gaps = 26/219 (11%)
Query: 19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGG 77
+ ++GG +P +NT L + +EKA+ ++PKD +E+ IK+ A E ++F E +YE Y GG
Sbjct: 35 SAREGGSDPNTNTSLRSAIEKARSANMPKDTMEKAIKKGAGELEGQSFSEALYEGYAPGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI---KFTDADKDQ 134
V++++ LTD R+ +R + GG MA+ G+V + F R V+ + + +D ++ Q
Sbjct: 95 VALLIRCLTDNKNRTAQEIRHTLSKYGGSMAESGAVSWMFERKGVITVAKEQISDLEEFQ 154
Query: 135 LLDIALDAGAEDVI--EPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
LL A++AGAED+ E P+ +V++ ++ +D+ T L E G +
Sbjct: 155 LL--AIEAGAEDIKDEEDPI--------------IIVTSPESVSDVKTALEENGYTLSYE 198
Query: 193 NGSELLPITTIEVD-DEAMELNKELIAKLLELDDVDAVY 230
+P +++V+ +A +L K L+ L + DDV VY
Sbjct: 199 --MSYIPSNSLKVEGSDAAKLLK-LLDILEDNDDVQEVY 234
>gi|389693704|ref|ZP_10181798.1| DNA-binding regulatory protein, YebC/PmpR family [Microvirga sp.
WSM3557]
gi|388587090|gb|EIM27383.1| DNA-binding regulatory protein, YebC/PmpR family [Microvirga sp.
WSM3557]
Length = 248
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 17/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD ++R I +AS E + E YE YG GG +
Sbjct: 36 AKMGMPDPNMNPRLRAAILAARAENMPKDNIQRAINKASGGDAENYDEIRYEGYGPGGAA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE +TD R+ + +R GG +A+ G+V F F R + AD D +L+ A
Sbjct: 96 IIVEAMTDNRNRTASDIRSYFTKSGGNLAETGAVSFMFDRVGYIEFGPDVADADAMLEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
+DAGA+DV+ +E +++ + ++T L + F S+L+
Sbjct: 156 IDAGADDVVS------------SENGHEIYCDQGSLNEVTKALEDK---FGEPKASKLVW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P T + VDDE E +L+ L E DDV +VY
Sbjct: 201 KPQTPVAVDDETGEKLMKLMESLEEHDDVQSVY 233
>gi|433772676|ref|YP_007303143.1| DNA-binding regulatory protein, YebC/PmpR family [Mesorhizobium
australicum WSM2073]
gi|433664691|gb|AGB43767.1| DNA-binding regulatory protein, YebC/PmpR family [Mesorhizobium
australicum WSM2073]
Length = 249
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P+ N L ++ AK + +PKD ++R I +AS E + YE YG GGV+
Sbjct: 36 AKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRAINKASMGDAENYEAVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD RS + VR GG + + GSV F + RA + + D+++D A
Sbjct: 96 VIVEALTDNRNRSASNVRAAFTKAGGALGETGSVSFMWDRAGEIYYPASAGSADKIMDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGA+DV ++DE+ Y + + + T L EA + P
Sbjct: 156 IEAGADDV--------ESDEEGHTIYCSFETLGEVSKALETSLGEA-----ESVKAIWKP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD+E + +L+A L + DDV +VY +
Sbjct: 203 QNNVPVDEERAQSLMKLVATLEDDDDVQSVYAN 235
>gi|417095535|ref|ZP_11958370.1| hypothetical protein RHECNPAF_13006 [Rhizobium etli CNPAF512]
gi|327194141|gb|EGE61011.1| hypothetical protein RHECNPAF_13006 [Rhizobium etli CNPAF512]
Length = 238
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 118/238 (49%), Gaps = 19/238 (7%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q +R R + K G P+PT N L ++ AK +PKD ++R I
Sbjct: 1 MHRKGRQDAVRSKMFSKLAREITVAAKAGLPDPTMNARLRLAIQNAKAQSMPKDNIDRAI 60
Query: 55 KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
K+A+ E + E YE YG GG +I+VE LTD R+ + VR + GG + + GSV
Sbjct: 61 KKAAGADGENYDEVRYEGYGPGGTAIIVEALTDNRNRTASNVRSIFTKAGGALGETGSVS 120
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F F + K + D D++++ A++AGA+DV +TDE E +Y + +
Sbjct: 121 FSFDHVGEITYKLSVGDADKVMEAAIEAGADDV--------ETDE---EGHY-ITCAFEA 168
Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
D++ L E+G+ + + VD+E + +LI L + DDV VY++
Sbjct: 169 LGDVSKAL-ESGLGEAETVKAVWRAQNNVPVDEEKAQSLMKLIDSLEDDDDVQNVYSN 225
>gi|15672214|ref|NP_266388.1| hypothetical protein L31280 [Lactococcus lactis subsp. lactis
Il1403]
gi|281490720|ref|YP_003352700.1| hypothetical protein LLKF_0226 [Lactococcus lactis subsp. lactis
KF147]
gi|385837250|ref|YP_005874880.1| hypothetical protein YeeN [Lactococcus lactis subsp. cremoris A76]
gi|33517095|sp|Q9CIX4.1|YCDB_LACLA RecName: Full=Probable transcriptional regulatory protein YcdB
gi|12723090|gb|AAK04330.1|AE006261_1 conserved hypothetical protein [Lactococcus lactis subsp. lactis
Il1403]
gi|281374489|gb|ADA64010.1| Hypothetical protein LLKF_0226 [Lactococcus lactis subsp. lactis
KF147]
gi|358748478|gb|AEU39457.1| hypothetical protein YeeN [Lactococcus lactis subsp. cremoris A76]
Length = 238
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 16/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K+G P+P SN+ L V+E+AK+ VPK ++++ I +A G E F++ YE +G G +
Sbjct: 35 KQGEPDPESNSSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMV 94
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+ E LT + R++A VR GG + G+V + F V I F D D + +I L
Sbjct: 95 IAETLTSNVNRTIANVRTTFHKNGGNIGAAGAVSYMFDNTGV--IVFEGTDPDHIFEILL 152
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVST--SDNYTDITTKLREAGIPFETDNGSELL 198
DA E D + E VV T +D + I L+EAGI + E++
Sbjct: 153 DA-----------EVDVRDVTEEEGNIVVYTEPTDLHKGIAA-LKEAGITEFSTTELEMI 200
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + +E+ E +E+ + LI L + DDV VY +
Sbjct: 201 PQSEVELSPEDLEIFEGLIDALEDDDDVQKVYHN 234
>gi|392375445|ref|YP_003207278.1| hypothetical protein DAMO_2401 [Candidatus Methylomirabilis
oxyfera]
gi|258593138|emb|CBE69449.1| conserved hypothetical protein; YebC-like [Candidatus
Methylomirabilis oxyfera]
Length = 249
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 116/214 (54%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L +EKAK +++P+D ++R I++ + E ++ E +YE YG GGV
Sbjct: 36 ARAGGGDPDGNPRLRLAVEKAKAVNMPQDNIQRAIQKGTGELPGTSYEEYIYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E++TD R+ +R+ GG + + G V + F + ++ + ++AD+D+LL +
Sbjct: 96 AVLLEIVTDNKNRTAPEIRKAFAKYGGNLGESGCVAWMFDKKGLIQVYTSEADEDRLLGV 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAEDV DDT ++V++ + + L + I + +L
Sbjct: 156 VLEAGAEDV----RRSDDT--------FEVITAPKDLERVKASLTKEKIGI-AEGEVTML 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T++++ + + +L+ L E DDV VY +
Sbjct: 203 PQNTVKLEGKQAQQMLQLMETLEEHDDVQNVYAN 236
>gi|315037961|ref|YP_004031529.1| hypothetical protein LA2_03805 [Lactobacillus amylovorus GRL 1112]
gi|325956432|ref|YP_004291844.1| hypothetical protein LAC30SC_03680 [Lactobacillus acidophilus 30SC]
gi|385817311|ref|YP_005853701.1| hypothetical protein LAB52_03630 [Lactobacillus amylovorus GRL1118]
gi|312276094|gb|ADQ58734.1| hypothetical protein LA2_03805 [Lactobacillus amylovorus GRL 1112]
gi|325332997|gb|ADZ06905.1| hypothetical protein LAC30SC_03680 [Lactobacillus acidophilus 30SC]
gi|327183249|gb|AEA31696.1| hypothetical protein LAB52_03630 [Lactobacillus amylovorus GRL1118]
Length = 242
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L V++KA+ ++PKD ++R IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRAIKKAEGGSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
+ VE LTD R+ + VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VFVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQMLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+DAG +D+ DD Y++ + + + L + G D +
Sbjct: 156 DVMDAGGDDL----QTSDDA--------YEIYTDPKEFAAVRDALIKDGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E + L+ L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFEHLVDALEDNDDVQNVYT 236
>gi|291525103|emb|CBK90690.1| conserved hypothetical protein TIGR01033 [Eubacterium rectale DSM
17629]
gi|291529408|emb|CBK94994.1| conserved hypothetical protein TIGR01033 [Eubacterium rectale
M104/1]
Length = 242
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 16/193 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIE-KVYEVYGYGGV 78
VK+GGP+P +N LA V+ KAK ++P D +ER IK+A+ G E YE YG G
Sbjct: 36 VKEGGPDPANNFKLAQVVAKAKANNMPNDTIERGIKKAAGDGNSVNYETATYEGYGPSGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR G + G V MF + +++ + D D D L+
Sbjct: 96 AIIVKCLTDNKNRTAANVRNAFTKGQGSIGTQGCVSYMFDEKGQIIIDKEECDMDADDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
ALDAGAED +EDD+ Y++ + ++ + T L EAGI + +
Sbjct: 156 MQALDAGAEDF----ADEDDS--------YEITTAPADFDAVRTALEEAGITMASAEVT- 202
Query: 197 LLPITTIEVDDEA 209
++P T + + DEA
Sbjct: 203 MIPQTYVTLTDEA 215
>gi|163857411|ref|YP_001631709.1| hypothetical protein Bpet3099 [Bordetella petrii DSM 12804]
gi|226703704|sp|A9ITM2.1|Y3099_BORPD RecName: Full=Probable transcriptional regulatory protein Bpet3099
gi|163261139|emb|CAP43441.1| conserved hypothetical protein [Bordetella petrii]
Length = 243
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 14/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GGP+P SN L +KA + ++PKD ++R I+R + A E+V YE YG GG
Sbjct: 36 ARAGGPDPDSNPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGANYEEVRYEGYGIGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ +TD TR+VA VR GG + GSV F F+ A+ D +++
Sbjct: 96 AVIVDCMTDNRTRTVAEVRHAFAKNGGNLGQEGSVAFMFKHCGQFVFAPGTAE-DVVMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV TD+ E +V+ +Y + AG+ E + G +
Sbjct: 155 ALEAGAEDVT--------TDD---EGVIEVICAPADYAAVRQAFEAAGLKAEVE-GIIMK 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
P E+ E ++L+ L LDDV VYT
Sbjct: 203 PQNETELTGEDAVKMQKLLDALEGLDDVQEVYT 235
>gi|395763770|ref|ZP_10444439.1| hypothetical protein JPAM2_18739 [Janthinobacterium lividum PAMC
25724]
Length = 241
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 22/230 (9%)
Query: 11 WGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK 68
W R K + GG + +N L ++KA + ++PKD V+R I R S A E+
Sbjct: 25 WTRLIKEITVAARMGGADAITNPRLRLAVDKAADANMPKDNVQRAINRGSGGVDGANYEE 84
Query: 69 V-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF 127
V YE YG GG +++VE +TD R+VA VR GG M + GSV F F+ + +
Sbjct: 85 VRYEGYGVGGAAVIVECMTDNKVRTVAEVRNAFNKNGGNMGNEGSVAFMFQHCGQL-LFA 143
Query: 128 TDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI 187
D+D+L++ AL+AGA+DVI DE E ++V++ ++ + L AG
Sbjct: 144 PGTDEDKLMEAALEAGADDVI--------ADE---EGGFEVLTPVHDFATVKEALEAAGF 192
Query: 188 PFETDNGSELL--PIT-TIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
E +E++ P T T+ D+A+++ K LI L LDDV V+T+ +
Sbjct: 193 KAEV---AEVIMKPATETVYAGDDAIKMQK-LIDALELLDDVQEVFTNAL 238
>gi|323452253|gb|EGB08128.1| hypothetical protein AURANDRAFT_14447 [Aureococcus anophagefferens]
Length = 223
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
V+ GGP+P SN L ++++A+ L+V ++IV+RNIK ASE A F E YE+Y +GG
Sbjct: 11 VRAGGPDPDSNRALGLIIKEAQALNVKREIVDRNIKAASEGKDGADFKELTYELYLHGGA 70
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLD 137
+V+ L+D R+ + V VVK K+A+ GSV+ F ++ R+ I D D+D ++
Sbjct: 71 GVVINALSDNNNRAFSDVGTVVKKANLKLAESGSVLHNFLKKGRITVI--ADLDEDAAIE 128
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+AL+A ++V E + D D E V+ + + + L +AG + E
Sbjct: 129 LALEADVDEV-EVVAPDADMRSDGEEVKSVVLVEPGDLGAMQSALSDAGYACVGNLVHEP 187
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAV 229
+ T +E ++ +E N ++ KL E+DDVD V
Sbjct: 188 IAGTLVECGEDDLEKNLLVLDKLAEVDDVDTV 219
>gi|414153004|ref|ZP_11409331.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411455386|emb|CCO07233.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 243
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 117/215 (54%), Gaps = 16/215 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGVS 79
+ GGP+P N L A +EKAK ++P + ++R I++ + G+ F E YE YG GG +
Sbjct: 37 RNGGPDPAGNMRLKAAIEKAKAANIPNENIQRAIQKGAGGGEGTQFEEFTYEGYGPGGAA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
I++ V TD R+ VR ++ GG + + G V + F+ ++ I + T +D ++
Sbjct: 97 ILLYVATDNRNRTAGEVRHILSKHGGNLGESGCVSWLFKEKGIIIIDRQETGISEDDIML 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A++AGAEDV V ED ++V+S +++ ++ T E GIP D +
Sbjct: 157 LAVEAGAEDV---KVEEDS---------FEVISAPEDFANVKTAFIEQGIPV-ADAEIAM 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TT+++ E E +I L + DDV AVYT+
Sbjct: 204 VPQTTVKLQGEEAEKMVRMIDLLEDNDDVQAVYTN 238
>gi|78357368|ref|YP_388817.1| hypothetical protein [Desulfovibrio alaskensis G20]
gi|119391301|sp|Q30YX4.1|Y2325_DESDG RecName: Full=Probable transcriptional regulatory protein Dde_2325
gi|78219773|gb|ABB39122.1| protein of unknown function DUF28 [Desulfovibrio alaskensis G20]
Length = 248
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 116/215 (53%), Gaps = 20/215 (9%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK--GQEAFIEKVYEVYGYGGVS 79
KGG +P +N+ L A + AK +++PKD +E IK+ + + G + F E VYE YG GG++
Sbjct: 37 KGGGDPVANSRLRAAIAAAKAVNLPKDKIETAIKKGTGELAGGDIF-ELVYEGYGPGGIA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++EV TD R+VA VR ++ GG M + G V + F + V+ +DQL++I
Sbjct: 96 FLIEVATDNKNRTVAEVRHILTKSGGSMGEAGCVGWMFDKKGVLTFPKEAYSEDQLMEIG 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL-- 197
L+AG +DVI +E D+ + V ++ D+ +AG+ E+ EL
Sbjct: 156 LEAGCDDVI----DEGDS--------WAVHVDPSSFEDVKAAFEQAGVTAES---VELAS 200
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TIEVD E + L+ L E DDV V+ +
Sbjct: 201 VPQNTIEVDAETGKKLLRLVDALEENDDVQNVFAN 235
>gi|313667975|ref|YP_004048259.1| hypothetical protein NLA_6360 [Neisseria lactamica 020-06]
gi|313005437|emb|CBN86872.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 242
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 30/224 (13%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGG 77
+ GG +P +N L LEKA E ++PKD V+R I + + +G E +IE YE YG GG
Sbjct: 36 ARMGGGDPGANPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVE-YIELRYEGYGIGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+++V+ LTD TR+VA VR GG + G V F F + + D+D L++
Sbjct: 95 AALMVDCLTDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFE-PGVDEDALME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAG-------IPFE 190
AL+AGAEDV+ N+D + E V++ +++ + + L AG +
Sbjct: 154 AALEAGAEDVV---ANDDGSIE--------VITAPNDWAGVKSALEAAGYKSVDGDVTMR 202
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T N +EL D+A+++ K LI L +LDDV VYT +
Sbjct: 203 TQNETEL-------SGDDAVKMQK-LIDALEDLDDVQDVYTSAV 238
>gi|291450330|ref|ZP_06589720.1| UPF0082 protein [Streptomyces albus J1074]
gi|359143895|ref|ZP_09178085.1| hypothetical protein StrS4_01382 [Streptomyces sp. S4]
gi|421744825|ref|ZP_16182766.1| DNA-binding regulatory protein, YebC/PmpR family [Streptomyces sp.
SM8]
gi|291353279|gb|EFE80181.1| UPF0082 protein [Streptomyces albus J1074]
gi|406686769|gb|EKC90849.1| DNA-binding regulatory protein, YebC/PmpR family [Streptomyces sp.
SM8]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RMGGADIDGNPTLFDAIQKAKKQSVPNKNIDSAVKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELSEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+EAGI +++ + + +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVLSEATDLVAVRTALQEAGIDYDSAD-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|313888243|ref|ZP_07821914.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312845646|gb|EFR33036.1| DNA-binding regulatory protein, YebC/PmpR family [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 241
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEVYGYGGV 78
K+GG +P N L ++KAK ++P D +ER I +A + F E VYE YG GGV
Sbjct: 36 AKEGGLDPDYNPSLKVAIDKAKAENMPNDNIERAIAKAGGGDNDDNFEEIVYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V LTD R+ +R + G + PG V F F + + + D+D+ I
Sbjct: 96 AVMVHCLTDNRNRTAPEIRHLFDKFAGNLGQPGCVSFMFDKKGSLGVLKEGLDEDEFTLI 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF-ETDNGSEL 197
A+DAGAEDV+ DR E +++++ ++Y ++ L + G F E+D
Sbjct: 156 AIDAGAEDVV-----------DRGEA-FEIITEPEDYHNVRKALEDEGHSFIESD--ITY 201
Query: 198 LPITTIEVDDEAMELNKE-LIAKLLELDDVDAVYT 231
+P T +DDE N E LI L + DDV V+T
Sbjct: 202 IPQTETALDDEDDIKNMEKLIDALEDNDDVTDVFT 236
>gi|227893238|ref|ZP_04011043.1| protein of hypothetical function DUF28 [Lactobacillus ultunensis
DSM 16047]
gi|227864921|gb|EEJ72342.1| protein of hypothetical function DUF28 [Lactobacillus ultunensis
DSM 16047]
Length = 242
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L V++KA+ ++PKD ++R IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRAIKKAEGGSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
I VE LTD R+ + VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 IFVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
++AG +D+ DD Y++ + + ++ L + G D +
Sbjct: 156 DVMNAGGDDL----QTSDDA--------YEIYTDPKQFAEVRDALIKDGYKL-ADAELTM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+P T V + E + L+ L + DDV VYT
Sbjct: 203 IPQNTTPVPADKKEQFEHLVDALEDNDDVQNVYT 236
>gi|345848766|ref|ZP_08801785.1| hypothetical protein SZN_03562 [Streptomyces zinciresistens K42]
gi|345639851|gb|EGX61339.1| hypothetical protein SZN_03562 [Streptomyces zinciresistens K42]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ IKR E G + +YE YG GV
Sbjct: 37 RMGGVDLEGNPTLYDAVQKAKKQSVPNKNIDSAIKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGNMADPGSVSYMFSRKGVVIVPKGELTEDDVLTA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E Y+V+S + + + T L+E GI +++ + S +
Sbjct: 157 VLDAGAEEV-------NDLGES-----YEVISEATDLVAVRTALQETGIDYDSAD-SSFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PSVQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|239623713|ref|ZP_04666744.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521744|gb|EEQ61610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 242
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 18/193 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D ++R IK+A+ E + YE YG GV
Sbjct: 36 VKEGGADPANNSKLRDVIAKAKANNMPNDTIDRGIKKAAGDAASVNYEILTYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + PGSV + F + +++ + + D D+L+
Sbjct: 96 AIIVDTLTDNKNRTAANVRSAFTKGGGNVGTPGSVSYMFDKKGQIIIDKEECEMDPDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP-FETDNGS 195
IALDAGAED E E+D+ Y+V++ ++++ + L IP E D
Sbjct: 156 MIALDAGAEDFAE----EEDS--------YEVITAPEDFSAVREALEAQDIPMMEAD--V 201
Query: 196 ELLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 202 TMIPQTWVELTDE 214
>gi|322420880|ref|YP_004200103.1| hypothetical protein GM18_3392 [Geobacter sp. M18]
gi|320127267|gb|ADW14827.1| protein of unknown function DUF28 [Geobacter sp. M18]
Length = 247
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 118/217 (54%), Gaps = 21/217 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
K GG + N L ++KAK ++PKD VER IK+ G E + E YE YG GG
Sbjct: 36 AKLGGGDADGNPRLRTAIDKAKAENMPKDNVERAIKKGV-GGLEGVNYEETTYEGYGPGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLL 136
+++VEV+TD R+V+ VR + C G M + G V + F ++ +V K TD DK L
Sbjct: 95 TAVLVEVMTDNRNRTVSEVRSIFSKCNGNMGETGCVSWLFDKKGLLVFPKSTDFDK--LF 152
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS- 195
+ +++AGA+DV NED+ Y+V++ + + T L EAG F+ +N
Sbjct: 153 EASIEAGADDV----TNEDEQ--------YEVLTDPTAFHQVKTALEEAG--FKAENAEI 198
Query: 196 ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T ++++ + E +L+ ++ + DDV VY +
Sbjct: 199 TMIPQTMVKLEGKNAENMLKLMDRMEDNDDVQNVYAN 235
>gi|288923986|ref|ZP_06418056.1| protein of unknown function DUF28 [Frankia sp. EUN1f]
gi|288344664|gb|EFC79123.1| protein of unknown function DUF28 [Frankia sp. EUN1f]
Length = 251
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 16/213 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK--GQEAFIEKVYEVYGYGGV 78
K GG +P N LA + KAK VP D ++R IKR S + G + YE YG GV
Sbjct: 37 KTGGGDPAGNPTLADAIAKAKSQSVPNDNIDRAIKRGSGELAGGVNYESVTYEAYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
+++VE LTD R+ + VR + GG ADPGSV + F R VV I K + +D +L
Sbjct: 97 AVLVECLTDNRNRAASDVRVAITRNGGTPADPGSVSYLFNRKGVVLIDKSAELTEDDVLL 156
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V +D E ++VVS + + + +AG+ + + S
Sbjct: 157 AVLDAGAEEV-------NDVGE-----AFEVVSEATDLHAVRVAAGDAGLAVASADIS-W 203
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
LP ++ +D+E +L+ L +LDDV V+
Sbjct: 204 LPSVSVSLDEEPARKVLKLVEALEDLDDVQNVW 236
>gi|212697076|ref|ZP_03305204.1| hypothetical protein ANHYDRO_01641 [Anaerococcus hydrogenalis DSM
7454]
gi|212675851|gb|EEB35458.1| hypothetical protein ANHYDRO_01641 [Anaerococcus hydrogenalis DSM
7454]
Length = 245
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 115/225 (51%), Gaps = 36/225 (16%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
V++GG NP N L A ++KAK ++P D +ER IK+AS A E++ YE Y GV
Sbjct: 36 VREGGDNPEYNPALKAAIDKAKAENMPNDNIERAIKKASGDMDGANFERIIYEGYAKDGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ LTD R+ +R + GG + GSVMF F R ++ I+ D D L+
Sbjct: 96 AVIVDCLTDNKNRTAPDIRHIFDKNGGNLGTDGSVMFMFNRKGLIEIEKAGIDFDDLMLE 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITT-------KLREAGIPFET 191
+D GAEDV +E DT Y+++++ +++ I KL +A I +
Sbjct: 156 VIDLGAEDV----TDEGDT--------YQIITSVEDFQSIVDGIKKSDYKLTKADISYIA 203
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLEL----DDVDAVYTD 232
DN L+ +A E N + I KL++ DDV VYT+
Sbjct: 204 DN---LI---------DAQESNNKQIMKLIDALEDNDDVQEVYTN 236
>gi|209543388|ref|YP_002275617.1| hypothetical protein Gdia_1219 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209531065|gb|ACI51002.1| protein of unknown function DUF28 [Gluconacetobacter diazotrophicus
PAl 5]
Length = 249
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 111/214 (51%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ G P+P SN L A + A+E+++PKD VER IK+A+ G + + E YE YG GV
Sbjct: 36 ARSGMPDPASNPRLRAAISAAREVNMPKDTVERAIKKATGAGGGDDYAEVRYEGYGPAGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR GG + + SV F F R V+ A +D++L+
Sbjct: 96 AVIVEALTDNRNRTASDVRAAFSKHGGSLGETNSVSFMFTRLGVITYPAAVATEDEMLEA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A++AGAE+V + TDE ++V +++ + L E + +
Sbjct: 156 AIEAGAENV-------ESTDEG-----HEVTCPVESFFAVRDAL-ETRFGEPSSAKFDWR 202
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T + +D++ +LI L E DDV AVY +
Sbjct: 203 PGTVVTLDEDKARGVLKLIDVLDEHDDVQAVYAN 236
>gi|297584852|ref|YP_003700632.1| hypothetical protein [Bacillus selenitireducens MLS10]
gi|297143309|gb|ADI00067.1| protein of unknown function DUF28 [Bacillus selenitireducens MLS10]
Length = 242
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 17/224 (7%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GRK Y + K+G P+P +N L VLE+AK +VPK I+++ I +A G+E F E Y
Sbjct: 26 FGRKIY-QVAKQGEPDPEANQQLKFVLEQAKTYNVPKHIIDKAIDKAKGGGEENFDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+VE LT+ + R+ + VR GG M GSV + F + ++ ++ +
Sbjct: 85 EGFGPDGSMIIVEALTNNVNRTASEVRAAFGKNGGNMGVSGSVTYMFDQTAIIGVQGVSS 144
Query: 131 D--KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP 188
+ + L++ LD A D++E +ED+ Y + + + + + L AG+
Sbjct: 145 EDVMEWLMEADLD--ARDILE--------EEDQVILY----TEPEEFHAVQSALINAGVN 190
Query: 189 FETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ E+LP T + + EA +L+ L ELDDV VY +
Sbjct: 191 AFSVAEIEMLPQTEVTLQPEAKLQFDKLVDALEELDDVQQVYHN 234
>gi|332877638|ref|ZP_08445381.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332684387|gb|EGJ57241.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 239
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 13/211 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGP+P SN+ L AV++ AK ++PK+ +ER IK+ASEK + E ++E Y G++
Sbjct: 34 VKEGGPHPESNSRLRAVIQNAKAANMPKENIERAIKKASEKDTANYKEVLFEGYAPHGIA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+++E TD R+VA +R C G + GSV F F I D ++L
Sbjct: 94 VLIETATDNNNRTVANIRSYFNKCNGTLGTSGSVEFMFDHTCNFRINAEGIDPEELELEM 153
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+D GAE+V DED Y + +++ I +L I +G E +P
Sbjct: 154 IDFGAEEVF--------ADEDGILIY----APFESFGAIQKELESRNIEI-LSSGFERIP 200
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
T E+ E ++L+ K+ E DDV VY
Sbjct: 201 QVTKELTPEEQADVEKLLEKIEEDDDVQNVY 231
>gi|288925821|ref|ZP_06419752.1| glucose-1-phosphate adenylyltransferase [Prevotella buccae D17]
gi|315608223|ref|ZP_07883214.1| glucose-1-phosphate adenylyl transferase [Prevotella buccae ATCC
33574]
gi|402308781|ref|ZP_10827784.1| DNA-binding regulatory protein, YebC/PmpR family [Prevotella sp.
MSX73]
gi|288337476|gb|EFC75831.1| glucose-1-phosphate adenylyltransferase [Prevotella buccae D17]
gi|315250093|gb|EFU30091.1| glucose-1-phosphate adenylyl transferase [Prevotella buccae ATCC
33574]
gi|400374750|gb|EJP27664.1| DNA-binding regulatory protein, YebC/PmpR family [Prevotella sp.
MSX73]
Length = 246
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 118/242 (48%), Gaps = 24/242 (9%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK + ++ WG K++ + VK GGP P +N L A++ AK ++PKD +ER
Sbjct: 8 RKAAKLKRWGHMAKTFTKLGKQIAIAVKAGGPEPENNPTLRAIIANAKRENMPKDNIERA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK A K Q + E YE YG G+++ V+ LTD TR+VA VR + G + + GS+
Sbjct: 68 IKNAMGKDQSEYKEVTYEGYGPHGIAVFVDTLTDNTTRTVADVRSIFNKFSGNLGNQGSL 127
Query: 114 MFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
F F V K + D D+L+ +D G V + +++T E +
Sbjct: 128 SFLFDHKCVFTFKKKEGMDMDELILDLIDFG---VEDEYDEDEETGE------VTIYGAP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
++ DI L G FE G+E +P +V E E ++I KL E DDV VY
Sbjct: 179 TSFGDIQKHLEAEG--FEV-TGAEFTRIPNDLKDVTPEERETIDKMIEKLEEFDDVQTVY 235
Query: 231 TD 232
T+
Sbjct: 236 TN 237
>gi|21220021|ref|NP_625800.1| hypothetical protein SCO1521 [Streptomyces coelicolor A3(2)]
gi|289772767|ref|ZP_06532145.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|33517107|sp|Q9L288.1|Y1521_STRCO RecName: Full=Probable transcriptional regulatory protein SCO1521
gi|6822217|emb|CAB70923.1| conserved hypothetical protein SCL2.11c [Streptomyces coelicolor
A3(2)]
gi|289702966|gb|EFD70395.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 37 RMGGVDIEGNPTLYDAIQKAKKQSVPNKNIDSAVKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELAEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+EAGI +E+ + + +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVLSEATDLVAVRTALQEAGIDYESAD-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFRLIDALEDSDDVQNVFAN 237
>gi|49476139|ref|YP_034180.1| hypothetical protein BH14810 [Bartonella henselae str. Houston-1]
gi|67462042|sp|Q6G5P2.1|Y1481_BARHE RecName: Full=Probable transcriptional regulatory protein BH14810
gi|49238947|emb|CAF28244.1| hypothetical protein BH14810 [Bartonella henselae str. Houston-1]
Length = 248
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKQGSPDPAMNPRLRLAVQNAKAQSMPKDNIERAIKKASGSDVENYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R + K D ++D A
Sbjct: 96 VIVEALTDNRNRTASNIRAAFTKSGGALGETGSVSFMFNRIGEIIYKPEAGTTDNIMDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV E + ++ T ++ ++ +K+ EA + E ++ +
Sbjct: 156 IEAGAEDV------------QSEETGHHIICTFEDIGEV-SKMLEAKLG-EAESIKTVWK 201
Query: 200 ITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 232
TT+ DE L+ LI+ L E DDV VY +
Sbjct: 202 ATTLTPVDEEKALSILRLISTLEEDDDVQNVYAN 235
>gi|254362417|ref|ZP_04978526.1| hypothetical protein MHA_2024 [Mannheimia haemolytica PHL213]
gi|261494086|ref|ZP_05990589.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496073|ref|ZP_05992483.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452745061|ref|ZP_21944899.1| hypothetical protein F388_08314 [Mannheimia haemolytica serotype 6
str. H23]
gi|153094006|gb|EDN74922.1| hypothetical protein MHA_2024 [Mannheimia haemolytica PHL213]
gi|261308323|gb|EEY09616.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310252|gb|EEY11452.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452086901|gb|EME03286.1| hypothetical protein F388_08314 [Mannheimia haemolytica serotype 6
str. H23]
Length = 246
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 118/215 (54%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIE-KVYEVYGYGGV 78
K GG + +SN L A ++KA ++ +D + R I+R G + +E K+YE YG GG
Sbjct: 36 AKLGGGDTSSNPRLRAAVDKALSSNMTRDTINRAIERGVGGGDDTNMETKIYEGYGPGGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE L+D R+++ VR CGG + GSV + F + ++ + +AD+D L +
Sbjct: 96 AVMVECLSDNANRTISQVRPSFTKCGGNLGTEGSVGYLFSKKGLILV--ANADEDALTEA 153
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
A++AGA+D I+P ED + +++ + ++ + + AG F+ +N +
Sbjct: 154 AIEAGADD-IQP--QEDGS--------FEIYTAWEDLGSVKDGIEAAG--FKIENAEVTM 200
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TT+E+D E +LI +L + DDV VY +
Sbjct: 201 IPSTTVELDAETAPKLLDLINRLEDCDDVQNVYHN 235
>gi|375111422|ref|ZP_09757632.1| hypothetical protein AJE_15699 [Alishewanella jeotgali KCTC 22429]
gi|374568598|gb|EHR39771.1| hypothetical protein AJE_15699 [Alishewanella jeotgali KCTC 22429]
Length = 247
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 14/207 (6%)
Query: 25 PNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVE 83
P+ +N L ++KA ++ +D +ER IKR A + E + E VYE YG GGV+++VE
Sbjct: 40 PDVAANPRLRLAVDKALSENMTRDTIERAIKRGAGMQDGEQYEELVYEGYGPGGVAVIVE 99
Query: 84 VLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG 143
+TD R+VA VR GG + GSV + F+R V+ + D+DQLL++ALDAG
Sbjct: 100 TMTDNNKRTVADVRHAFSKYGGNLGTSGSVAYMFQRKGVL-LFAPGIDEDQLLELALDAG 158
Query: 144 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTI 203
A+DV + DD ++ V+++ D ++ + L AG E+ + LLP T
Sbjct: 159 ADDV----QSHDDGSQE-------VLTSPDAFSAVKDALAAAGFTAESAEIT-LLPDTRA 206
Query: 204 EVDDEAMELNKELIAKLLELDDVDAVY 230
E+D + +++ L + DDV VY
Sbjct: 207 ELDADTAARFIKMLDALEDSDDVQNVY 233
>gi|359772053|ref|ZP_09275491.1| hypothetical protein GOEFS_050_00470 [Gordonia effusa NBRC 100432]
gi|359310817|dbj|GAB18269.1| hypothetical protein GOEFS_050_00470 [Gordonia effusa NBRC 100432]
Length = 251
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 109/215 (50%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + + YE YG G
Sbjct: 36 ARTGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGGGEEAGGADWQTITYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ VR + GG MADPGSV + F R VV ++ D +D +L
Sbjct: 96 VAVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVAYLFTRRGVVTLEKGDQTEDDILM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V + DT ++VVS + + T L+EAGI +E+ ++
Sbjct: 156 AVLDAGAEEVNDLG----DT--------FEVVSEPTDLVAVRTALQEAGIDYESAE-ADF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD + +LI L + DDV VY++
Sbjct: 203 RASVEVPVDADGARKVFKLIDALEDSDDVQNVYSN 237
>gi|333919481|ref|YP_004493062.1| hypothetical protein AS9A_1813 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481702|gb|AEF40262.1| hypothetical protein AS9A_1813 [Amycolicicoccus subflavus DQS3-9A1]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR S E G + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLFDAIQKAKKASVPNDNIERARKRGSGEEAGGADWQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG MADPGSV + F R VV ++ D +D +L
Sbjct: 97 AVLIECLTDNRNRAAGEVRTAMSRNGGNMADPGSVAYLFSRKGVVVLEKGDRTEDDVLMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAE+V D D ++VVS + + + L++ I +++ S
Sbjct: 157 VLEAGAEEV------NDLGDS------FEVVSEPGDLVAVRSALQQDAIDYDSAELS-FQ 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P ++ VD + +LI L + DDV VY++
Sbjct: 204 PSVSVAVDVDGARKVFKLIDALEDCDDVQNVYSN 237
>gi|21730736|pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
Aq1575 From Aquifex Aeolicus
Length = 249
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 17/213 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIV 81
GGPNP N L +E+AK+ + P + +ER IK+ A E E F E +YE Y GGV++
Sbjct: 39 GGPNPEFNPRLRTAIEQAKKANXPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGVAVX 98
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
V TD R+ + VR V GG + G V + F R + + + +++LL+ A++
Sbjct: 99 VLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIE 158
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
GAEDV +P E + + + + ++ L + G+P E + PI+
Sbjct: 159 VGAEDV-QP-----------GEEVHIIYTVPEELYEVKENLEKLGVPIEKAQIT-WKPIS 205
Query: 202 TIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
T++++DE A ++ K L+ L ELDDV V +
Sbjct: 206 TVQINDEETAQKVIK-LLNALEELDDVQQVIAN 237
>gi|313895671|ref|ZP_07829227.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
oral taxon 137 str. F0430]
gi|320528950|ref|ZP_08030042.1| conserved hypothetical protein TIGR01033 [Selenomonas artemidis
F0399]
gi|402301939|ref|ZP_10821061.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC9]
gi|312975797|gb|EFR41256.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
oral taxon 137 str. F0430]
gi|320138580|gb|EFW30470.1| conserved hypothetical protein TIGR01033 [Selenomonas artemidis
F0399]
gi|400381324|gb|EJP34126.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC9]
Length = 241
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 25/220 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI RA +KG A + E VYE YG
Sbjct: 36 VRMGGGDPTGNMRLKLALSKAKANNIPKD----NINRAIQKGLGATEGSNYEEVVYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKD 133
GG ++++++LTD R+ A VR + GG + G V + F++ V + K + D+D
Sbjct: 92 PGGTAVLLDILTDNRNRTAADVRHLFSKYGGNLGQDGCVAWMFKKKAVFIVEKDSFDDED 151
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL++ L+AGAED+ EDD +++V+ D + I T L + GI ET +
Sbjct: 152 ALLELVLEAGAEDMRA----EDDV--------FEIVAAPDAFESIETALGDKGI--ETVS 197
Query: 194 GS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T + + ++ E + LI L + DDV VY++
Sbjct: 198 AEVTMVPDTMVSLSEKDAEKMQTLIDALEDNDDVQNVYSN 237
>gi|316932640|ref|YP_004107622.1| hypothetical protein [Rhodopseudomonas palustris DX-1]
gi|315600354|gb|ADU42889.1| protein of unknown function DUF28 [Rhodopseudomonas palustris DX-1]
Length = 248
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVLAARAENMPKDNIERAIKKAIGGDSENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRTGIIEYDADKASADDMLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
++AGA+DV+ +E ++V ++ + + D+ L R+A + ++
Sbjct: 156 IEAGADDVVS------------SESGHEVYASQETFRDVAKALEAKFGEARKAAVIWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L + DDV VY +
Sbjct: 202 ------PQNTVAVDDETGEKLFKLMDALNDHDDVQNVYAN 235
>gi|402830797|ref|ZP_10879492.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. CM59]
gi|402283747|gb|EJU32257.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. CM59]
Length = 239
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 13/211 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGP+P +N L A+++ AK ++PK+ VER IKRA+EK + E ++E Y G++
Sbjct: 34 VKEGGPHPETNARLRAIMQNAKAANMPKENVERAIKRATEKDTANYKEILFEGYAPHGIA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I++E TD R+VA +R C G + GSV F F I D ++L
Sbjct: 94 ILIETATDNNNRTVANIRSYFNKCNGTLGTSGSVEFMFDHTCNFRINAEGIDPEELELEM 153
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+D GAE+V V+ED + + +++ I +L I +G E +P
Sbjct: 154 IDFGAEEVF---VDEDGI---------LIYAPFESFGAIQKELESRHIEI-LSSGFERIP 200
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
T E+ E ++L+ K+ E DDV VY
Sbjct: 201 QVTKELSPEEQADVEKLLEKIEEDDDVQNVY 231
>gi|256832603|ref|YP_003161330.1| hypothetical protein Jden_1371 [Jonesia denitrificans DSM 20603]
gi|256686134|gb|ACV09027.1| protein of unknown function DUF28 [Jonesia denitrificans DSM 20603]
Length = 252
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGG 77
+ GG +P N L ++ AK+ VP D ++R +KR + +G + +YE Y GG
Sbjct: 36 ARTGGGDPQGNPTLFDAIQTAKKNSVPGDNIDRAVKRGAGLIEGGADYQTIMYEGYAPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I+VE LTD RS A VR GG++ADPGSV + F R +V I + ++D ++
Sbjct: 96 VAILVECLTDNKNRSAADVRVAFTRGGGQLADPGSVAYMFSRKGLVVIPANNHNEDDIMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V + E DT ++V+ + + + L A I +++ S
Sbjct: 156 AVLDAGAEEVNQ----EGDT--------FEVLCEATDLRAVRDALESADIEYDSAE-SIW 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T IE+D + +LI L + DDV VY +
Sbjct: 203 HPATRIELDADGARKVFKLIDALEDSDDVQNVYAN 237
>gi|163790272|ref|ZP_02184705.1| hypothetical protein CAT7_05109 [Carnobacterium sp. AT7]
gi|159874547|gb|EDP68618.1| hypothetical protein CAT7_05109 [Carnobacterium sp. AT7]
Length = 241
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 113/216 (52%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
VK GGP+P+ N L V++KAK ++P D VER IK+ S G+ E + E +YE YG G
Sbjct: 36 VKSGGPDPSINPSLRMVMDKAKSNNMPNDNVERAIKKGSATGENENYDEVIYEGYGPKGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLL 136
+++V LTD + R+ VR GG + + GSV + F R + I + D D+D +L
Sbjct: 96 AVLVHTLTDNLNRTGTNVRVAFNKNGGSLGEKGSVSYMFDRKGYIAIEREGLDIDEDTML 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
L+AG +++ + ++ +++ + + D+ L + G +
Sbjct: 156 MSVLEAGGDEM------------ETSDEVFEIYTDPSDLPDVRDALEKEGYKLAQAEVT- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT+E+ ++ L ++I KL E DDV V+ +
Sbjct: 203 MIPQTTVELPEDKKALFNQMIDKLEEDDDVSEVFHN 238
>gi|397170128|ref|ZP_10493554.1| hypothetical protein AEST_13200 [Alishewanella aestuarii B11]
gi|396088334|gb|EJI85918.1| hypothetical protein AEST_13200 [Alishewanella aestuarii B11]
Length = 247
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 114/209 (54%), Gaps = 14/209 (6%)
Query: 25 PNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVE 83
P+ +N L ++KA ++ +D +ER IKR A + E + E VYE YG GGV+++VE
Sbjct: 40 PDVAANPRLRLAVDKALSENMTRDTIERAIKRGAGMQDGEQYEELVYEGYGPGGVAVIVE 99
Query: 84 VLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG 143
+TD R+VA VR GG + GSV + F+R V+ + D+DQLL++ALDAG
Sbjct: 100 TMTDNNKRTVADVRHAFSKYGGNLGTSGSVAYMFQRKGVL-LFAPGIDEDQLLELALDAG 158
Query: 144 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTI 203
A+DV + DD ++ V+++ + ++ + L AG E+ + LLP T
Sbjct: 159 ADDV----QSHDDGSQE-------VLTSPEAFSAVKDALAAAGFTAESAEIT-LLPDTRA 206
Query: 204 EVDDEAMELNKELIAKLLELDDVDAVYTD 232
E+D E +++ L + DDV VY +
Sbjct: 207 ELDAETAARFIKMLDALEDSDDVQNVYHN 235
>gi|374340585|ref|YP_005097321.1| YebC/PmpR family DNA-binding regulatory protein [Marinitoga
piezophila KA3]
gi|372102119|gb|AEX86023.1| DNA-binding regulatory protein, YebC/PmpR family [Marinitoga
piezophila KA3]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 115/215 (53%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
K+GG +P +N L +EKAK+ ++PKD +E IK+ A ++++E +YE YG GV
Sbjct: 36 AKEGGDDPEANPRLRTAIEKAKDANMPKDKIEAAIKKGAGGTDADSYVEIMYEGYGPAGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
+I++ LTD R+ VR ++ GG +A+ G+V + F R ++ + K AD D+ +
Sbjct: 96 AIIMRALTDNKNRTAQEVRHILSKNGGSLAESGAVAWNFERKAMITVPKEEVADLDEFMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGAEDVI ED+T +V++ ++ + L++ G F
Sbjct: 156 EALDAGAEDVI-----EDET--------IQVIAAPEDMVQVRDTLKDKG--FTVKASLTY 200
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T+++ E +LI L + DD+ V+ +
Sbjct: 201 IPKNTVKIAGSDAEKMLKLIDALEDSDDIQEVFAN 235
>gi|296139641|ref|YP_003646884.1| hypothetical protein [Tsukamurella paurometabola DSM 20162]
gi|296027775|gb|ADG78545.1| protein of unknown function DUF28 [Tsukamurella paurometabola DSM
20162]
Length = 251
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 108/215 (50%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
+ GG +P N L ++KAK+ VP D +ER KR + + +YE YG G
Sbjct: 36 ARTGGGDPDGNPTLYDAIQKAKKNSVPNDNIERARKRGGGEEGGGADWQTIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V++++E LTD R+ VR + GG MADPGSV + F R +V + D +D +L
Sbjct: 96 VAVLIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVSYLFTRKGIVTLDKNDQSEDDVLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V D E+ ++++S + + T L+EAGI +E+ S
Sbjct: 156 AVLDAGAEEV-----------SDLGEQ-FEIISEPTDLVAVRTSLQEAGIDYESAE-SGF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +D + +LI L + DDV VYT+
Sbjct: 203 RASVEVPLDADGARKVFKLIDALEDSDDVQNVYTN 237
>gi|334127864|ref|ZP_08501766.1| glucose-1-phosphate adenylyltransferase [Centipeda periodontii DSM
2778]
gi|333388585|gb|EGK59759.1| glucose-1-phosphate adenylyltransferase [Centipeda periodontii DSM
2778]
Length = 242
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 27/221 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI RA +KG A + E +YE YG
Sbjct: 36 VRMGGGDPTGNMRLKLALSKAKANNIPKD----NINRAIQKGLGATEGSNYEELLYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADK 132
GG ++++++LTD R+ A VR + GG + G V MFK + +V + D D+
Sbjct: 92 PGGTAVMLDILTDNRNRTAADVRHLFSKYGGNLGQDGCVSWMFKKKAVFIVEREAFD-DE 150
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
D LL+I L+AGAED+ EDD +++++ D + I L E GI ET
Sbjct: 151 DALLEIVLEAGAEDMRA----EDDV--------FEIIAEPDAFDAIEAILGEKGI--ETA 196
Query: 193 NGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P TT+ + D+ E + LI L + DDV VY++
Sbjct: 197 SAEVTMVPDTTVHLADKDAEKMQTLIDALEDNDDVQNVYSN 237
>gi|326791289|ref|YP_004309110.1| hypothetical protein Clole_2199 [Clostridium lentocellum DSM 5427]
gi|326542053|gb|ADZ83912.1| protein of unknown function DUF28 [Clostridium lentocellum DSM
5427]
Length = 243
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 15/171 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P+ N L+ V+ KAK ++P D ++R+IK+A+ G E + YE YG GV
Sbjct: 36 VKEGGADPSLNRKLSDVIAKAKSNNMPNDTIQRSIKKAAGDGDNVHYEYITYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+++VE LTD RS A VR G M G V F F + V+ + TD D+D+L+
Sbjct: 96 AVIVETLTDNKNRSAANVRSYFTKGNGNMGTTGCVSFMFDKKGQIVIEKEATDMDEDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI 187
+A++AGA+D + E Y + ++ ++++D+ L AGI
Sbjct: 156 MMAIEAGADDF------------EAEEEGYTITTSPESFSDVHAALEAAGI 194
>gi|203287497|ref|YP_002222512.1| hypothetical protein BRE_29 [Borrelia recurrentis A1]
gi|226734019|sp|B5RQK7.1|Y029_BORRA RecName: Full=Probable transcriptional regulatory protein BRE_29
gi|201084717|gb|ACH94291.1| uncharacterized conserved protein [Borrelia recurrentis A1]
Length = 243
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 113/215 (52%), Gaps = 19/215 (8%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA--SEKGQEAFIEKVYEVYGYGGV 78
+ GG + SN L + KA+ ++PKD +E+ IK+ G E F + YE Y GV
Sbjct: 37 RMGGGDIDSNPRLRLAVNKARVANMPKDNIEKAIKKGIGDNMGSEYF-KLTYEAYALYGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++++ LTD R+ + VR V+ GG + PGSV + F + +++ +D+++++
Sbjct: 96 ALIIKCLTDNKNRTASEVRSVLSKSGGSLGAPGSVSYMFHKKGLISYNLDKYHEDEIIEL 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
AL+AGAED+ +V++++DN+ +++ LR FE D L
Sbjct: 156 ALEAGAEDIYSEGSQ------------VEVITSADNFESVSSILR---TKFEEDIAEVAL 200
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P + + +D E M+ +I KL + DDV VY +
Sbjct: 201 VPESKVALDKEQMDKVLAIIEKLEDCDDVQEVYHN 235
>gi|408533273|emb|CCK31447.1| UPF0082 protein [Streptomyces davawensis JCM 4913]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR E G + +YE YG GV
Sbjct: 37 RMGGVDIEGNPTLYDAIQKAKKQSVPNKNIDSAVKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R V+ + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGNMADPGSVSYMFSRKGVIIVPKGELSEDDVLTA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+EAGI +++ S +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVISEATDLVAVRTALQEAGIDYDSAE-SSFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E + +LI L + DDV V+ +
Sbjct: 204 PSVQVELDEEGAKKIFKLIDALEDSDDVQNVFAN 237
>gi|346224890|ref|ZP_08846032.1| hypothetical protein AtheD1_06986 [Anaerophaga thermohalophila DSM
12881]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGP+P +N L ++ A+ +++PKD + R I +ASE G E+ E +E YG GGV+
Sbjct: 36 VKEGGPDPETNPRLRLAVQNARSVNMPKDNINRAIAKASEVGSESLQEITFEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVN-IKFTDADKDQLLDI 138
+ +E +TD R+V AVR + GG + GS+ F F R V +K D D ++L
Sbjct: 96 VFLECMTDNNNRTVGAVRSIFNKRGGSLGTNGSLSFLFDRKGVFQVVKKDDMDLEELELE 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
+DAGA+++ + E V + +++ + KL E G+ E +N S +
Sbjct: 156 LIDAGAQEI------------EMDEELIVVTTEMEDFGAVQKKLDELGV--EVENASLQR 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P + E+D E + +I + + +DV VY +
Sbjct: 202 IPNSYKELDLETAKKFLRMIDEFEDNEDVQNVYHN 236
>gi|344338368|ref|ZP_08769300.1| UPF0082 protein yeeN [Thiocapsa marina 5811]
gi|343801650|gb|EGV19592.1| UPF0082 protein yeeN [Thiocapsa marina 5811]
Length = 249
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGVS 79
++GG +P +N L ++KA ++P+D VER IKR + + E + E YE YG GGV+
Sbjct: 37 REGGGDPGANPRLRLAMDKAFGANMPRDTVERAIKRGAGGMEGENYEEIRYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V+ +TD R+ A VR GG + GSV + F + +++ + D+D +++ A
Sbjct: 97 IMVDCMTDNRNRTAAEVRHAFSKHGGNLGTDGSVGYLFTKQGIISFQ-PGTDEDAVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+AGAEDV+ N+D + VV+T + + + L +AG E S
Sbjct: 156 LEAGAEDVL---ANDDGS--------LDVVTTPEAFASVKDALTQAGFDTEVAEIS-YNA 203
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T E+D E E L+ L ELDDV VY +
Sbjct: 204 ATLAELDRETAEKLLRLVDVLDELDDVQEVYHN 236
>gi|73663363|ref|YP_302144.1| hypothetical protein SSP2054 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|119391296|sp|Q49VL1.1|Y2054_STAS1 RecName: Full=Probable transcriptional regulatory protein SSP2054
gi|72495878|dbj|BAE19199.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 238
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 17/224 (7%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+G++ Y+ K G P+P SN L LE+AK VP I+E+ I++A G+E + E Y
Sbjct: 26 FGKEIYVA-AKSGEPDPESNQALRLTLERAKTYSVPNHIIEKAIEKAKGSGEENYDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+V+ LTD + R+ + VR GG M GSV + F V I+
Sbjct: 85 EGFGPSGSMIIVDALTDNVNRTASDVRSAFGKNGGNMGVSGSVAYMFEYTAVFGIE---- 140
Query: 131 DKDQLLDIALDAGAEDVIEPPVNED-DTDEDRAERYYKVV-STSDNYTDITTKLREAGIP 188
D A+D++E + +D D + E +V + D + + LRE G+
Sbjct: 141 ----------DKSADDILESLMEQDIDVRDVIDENGLTIVYAEPDQFAQVQDALRETGVD 190
Query: 189 FETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
E+LP T IE+ E E + L+ L +LDDV V+ +
Sbjct: 191 TFKVAEFEMLPQTDIELSAEDQETFETLVEALEDLDDVQNVFHN 234
>gi|84496341|ref|ZP_00995195.1| hypothetical protein JNB_02440 [Janibacter sp. HTCC2649]
gi|84383109|gb|EAP98990.1| hypothetical protein JNB_02440 [Janibacter sp. HTCC2649]
Length = 252
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + T N L ++KAK+ VP + ++ +KR S G + YE Y GGV
Sbjct: 37 RTGGGDITGNPTLYDAIQKAKKSSVPNNNIDNAVKRGSGATAGGSDWETITYEGYAPGGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E LTD R+ A VR + GG++ DPGSV + F R VV + D +D +L+I
Sbjct: 97 AILIECLTDNRNRAAAEVRTALTRNGGQLGDPGSVAYVFDRKGVVVVPKGDKSEDDILEI 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGA++V D E Y++VS + ++ + +++AGI +++ S +
Sbjct: 157 VLDAGADEV-----------NDLGEA-YEIVSEATDFVAVRKAVQDAGIDYDSAEAS-WV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P IE+D + + +I L + DDV V+ +
Sbjct: 204 PNLQIELDLDGAKKMIRVIDALEDSDDVQDVFAN 237
>gi|325847799|ref|ZP_08170021.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325480817|gb|EGC83870.1| DNA-binding regulatory protein, YebC/PmpR family [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 245
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 36/225 (16%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
V++GG NP N L A ++KAK ++P D +ER IK+AS A E++ YE Y GV
Sbjct: 36 VREGGDNPEYNPALKAAIDKAKAENMPNDNIERAIKKASGDMDGANFERIIYEGYAKDGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ LTD R+ +R + GG + GSVMF F R ++ I+ D D+L+
Sbjct: 96 AVIVDCLTDNKNRTAPDIRHIFDKNGGNLGTDGSVMFMFNRKGLIEIEKDGIDFDELMLE 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITT-------KLREAGIPFET 191
+D GAEDV +E DT Y+++++ +++ + KL +A I +
Sbjct: 156 VIDLGAEDV----TDEGDT--------YQIITSVEDFQSVVDGIKKSDYKLTKADISYIA 203
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLEL----DDVDAVYTD 232
DN L+ +A E N + I KL++ DDV VYT+
Sbjct: 204 DN---LI---------DAQESNNKQIMKLIDALEDNDDVQEVYTN 236
>gi|441523312|ref|ZP_21004938.1| putative transcriptional regulatory protein [Gordonia sihwensis
NBRC 108236]
gi|441457083|dbj|GAC62899.1| putative transcriptional regulatory protein [Gordonia sihwensis
NBRC 108236]
Length = 251
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + + YE YG GV
Sbjct: 37 RTGGSDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGGGEEGGGADWQNITYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E LTD R+ VR + GG MADPGSV + F R VV ++ D +D +L
Sbjct: 97 AILIECLTDNRNRAATEVRVAMTRNGGNMADPGSVSYLFTRKGVVTLEKGDQTEDDVLMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V + +++VS + + T L+EAGI +++ +
Sbjct: 157 VLDAGAEEVTD------------LGDSFEIVSEPGDLVAVRTALQEAGIDYDSAE-PDFR 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD E +LI L + DDV VY++
Sbjct: 204 ASVEVAVDAEGARKVMKLIDALEDSDDVQNVYSN 237
>gi|381183452|ref|ZP_09892186.1| hypothetical protein KKC_09162 [Listeriaceae bacterium TTU M1-001]
gi|380316655|gb|EIA20040.1| hypothetical protein KKC_09162 [Listeriaceae bacterium TTU M1-001]
Length = 244
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 119/216 (55%), Gaps = 20/216 (9%)
Query: 22 KGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSI 80
K GP+PT N L V++KAK ++P D ++R I++AS + E + E YE YG GV++
Sbjct: 37 KNGPDPTLNPALRLVMDKAKAANMPNDNIDRAIQKASGNQSGENYDEVSYEGYGPSGVAV 96
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFT-DADKDQLLDI 138
+V LTD R+ VR GG + + GSV + F R+ +V ++ D +D+L+ +
Sbjct: 97 LVHALTDNKNRTSTNVRVAFNKNGGSLGETGSVAYLFNRKGYLVLLRENLDLSEDELMLL 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A+DAGAED++ ++ +++ + + ++ + +L AG+ FE +EL
Sbjct: 157 AIDAGAEDIL------------TSDEAFEIFTEATDFLAVKEQLENAGLTFE---AAELT 201
Query: 199 PITTI--EVDDEAMELNKELIAKLLELDDVDAVYTD 232
I TI ++ + +++I+ L + DDV VYT+
Sbjct: 202 MIPTIYQKIPENKQAEFEKMISLLEDDDDVQDVYTN 237
>gi|217967996|ref|YP_002353502.1| hypothetical protein Dtur_1615 [Dictyoglomus turgidum DSM 6724]
gi|226734745|sp|B8E2P4.1|Y1615_DICTD RecName: Full=Probable transcriptional regulatory protein Dtur_1615
gi|217337095|gb|ACK42888.1| protein of unknown function DUF28 [Dictyoglomus turgidum DSM 6724]
Length = 249
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVS 79
K GG NP +N L A +E+A+E ++PK+ +E+ I R + E A+ E YE YG GGV+
Sbjct: 37 KHGGGNPETNPRLRAAIERAREANMPKENIEKAIMRGTGEIPGVAYEEVTYEGYGPGGVA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLDI 138
I+VEV+TD R+ A +R + GG + + G V + F + ++ K + D+DQL+
Sbjct: 97 IMVEVVTDNKNRTAAEIRRIFTKHGGNLGEAGCVAWIFEEKGSIIIEKESVKDEDQLISD 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAEDV DDT E V+++ ++++++ L+E G T +
Sbjct: 157 ALEAGAEDV----QISDDTVE--------VITSPESFSEVRDILKEKGYKI-TQAEVTKV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + VD E +L+ +L + DDV Y +
Sbjct: 204 PKNLVPVDGPDAEKVLKLMEELEDHDDVQKTYAN 237
>gi|162146620|ref|YP_001601079.1| hypothetical protein GDI_0798 [Gluconacetobacter diazotrophicus PAl
5]
gi|161785195|emb|CAP54741.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 239
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 111/214 (51%), Gaps = 14/214 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ G P+P SN L A + A+E+++PKD VER IK+A+ G + + E YE YG GV
Sbjct: 26 ARSGMPDPASNPRLRAAISAAREVNMPKDTVERAIKKATGAGGGDDYAEVRYEGYGPAGV 85
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR GG + + SV F F R V+ A +D++L+
Sbjct: 86 AVIVEALTDNRNRTASDVRAAFSKHGGSLGETNSVSFMFTRLGVITYPAAVATEDEMLEA 145
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A++AGAE+V + TDE ++V +++ + L E + +
Sbjct: 146 AIEAGAENV-------ESTDEG-----HEVTCPVESFFAVRDAL-ETRFGEPSSAKFDWR 192
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T + +D++ +LI L E DDV AVY +
Sbjct: 193 PGTVVTLDEDKARGVLKLIDVLDEHDDVQAVYAN 226
>gi|407975337|ref|ZP_11156243.1| hypothetical protein NA8A_13545 [Nitratireductor indicus C115]
gi|407429422|gb|EKF42100.1| hypothetical protein NA8A_13545 [Nitratireductor indicus C115]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ AK +PKD +ER IK+A+ E + E YE YG GGV+
Sbjct: 36 AKAGLPDPAMNPRLRLAIQNAKAQSMPKDNIERAIKKAAGGDSENYEEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD RS + +R GG + + GSV F F R + + D D++++ A
Sbjct: 96 VIVEALTDNRNRSASNIRAAFTKAGGSLGETGSVSFMFDRVGEIVYPVSVGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV +DE+ + ++ ++ ++T+ L A E+ + P
Sbjct: 156 IEAGAEDV--------QSDENG----HVIICGFEDIGEVTSALETALGEAESVK-AIWRP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T VD+E + +L+A L + DDV VY +
Sbjct: 203 QTGTPVDEERAQSILKLVATLEDDDDVQNVYAN 235
>gi|289766382|ref|ZP_06525760.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|289717937|gb|EFD81949.1| conserved hypothetical protein [Fusobacterium sp. D11]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 19/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K+GG +P N L +EKAK ++PKDI+ER IK+ S + + F E YE YG G
Sbjct: 36 AKEGGGDPNFNPRLRLAIEKAKAGNMPKDILERAIKKGSGELEGVDFTEMRYEGYGPAGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+ +VE +TD R+ + +R G + G+V + F++ ++ +K D D+ +
Sbjct: 96 AFIVEAVTDNKNRTASEIRMTFTRKDGNLGADGAVSWMFKKKGIITVKSEGIDADEFMMA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGAED V EDD Y++V + + + L+ G +E S ++
Sbjct: 156 ALEAGAED-----VEEDDG-------YFEVTTEYTEFQTVLENLKNVGYQYEEAEIS-MI 202
Query: 199 PITTIEVDDEAMELNKELIA---KLLELDDVDAVYTD 232
P T+E+ D +E K+++A L +LDD VY++
Sbjct: 203 PENTVEITD--LETAKKVMALYDALEDLDDSQNVYSN 237
>gi|395765394|ref|ZP_10445998.1| UPF0082 protein [Bartonella sp. DB5-6]
gi|395412067|gb|EJF78579.1| UPF0082 protein [Bartonella sp. DB5-6]
Length = 248
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+P+ N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKQGAPDPSMNPRLRLAVQNAKAQSMPKDNIERAIKKASGNDVEHYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + K D ++D A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKSGGALGETGSVSFMFNRIGEIIYKPEAGTADSIMDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV E + + ++ ++ +K+ EA + +
Sbjct: 156 IEAGAEDV------------QSEETGHHITCAFEDIGEV-SKMLEAKLGEAQSIKTVWKA 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
IT VD+E LI+ L E DDV VY +
Sbjct: 203 ITLAPVDEEKALSVLRLISTLEEDDDVQNVYAN 235
>gi|302670574|ref|YP_003830534.1| hypothetical protein bpr_I1213 [Butyrivibrio proteoclasticus B316]
gi|302395047|gb|ADL33952.1| hypothetical protein bpr_I1213 [Butyrivibrio proteoclasticus B316]
Length = 245
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK+GGPNP +N LA V+ KAK ++P D +ER IK+AS G + YE YG GG
Sbjct: 36 VKEGGPNPANNFKLATVIAKAKANNMPNDTIERGIKKASGADGAVDYKSITYEGYGPGGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
+I+VE LTD R+ A V+ G + PG V MF + +++ + D L+
Sbjct: 96 AIIVETLTDNQNRTAANVKSAFTKGNGNVGTPGCVSYMFDNKGQILIDKEECKMSSDDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI 187
+ LDAGA+D E E+D+ Y++++T D++ + L EAG+
Sbjct: 156 MLVLDAGADDFNE----EEDS--------YEILTTPDSFQAVVEALNEAGV 194
>gi|260893481|ref|YP_003239578.1| hypothetical protein Adeg_1634 [Ammonifex degensii KC4]
gi|260865622|gb|ACX52728.1| protein of unknown function DUF28 [Ammonifex degensii KC4]
Length = 252
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 123/218 (56%), Gaps = 21/218 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-SEKGQEAFIEKVYEVYGYGGV 78
V+ GG +P +N L A +++A+E ++P + ++R I++A E+ E + E YE YG GGV
Sbjct: 36 VRMGGGDPEANPRLRAAIDRAREANIPMENIKRAIQKALGEETGEKYEEVFYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK----FTDADKDQ 134
++++ T+ R+ A VR V+ GG + + G V + FR ++ ++ F++ D
Sbjct: 96 ALLIRTTTNNRNRTAAEVRHVLSKFGGNLGEAGCVSWLFRSQGLITVRKDSGFSEED--- 152
Query: 135 LLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNG 194
LL +A++AGA D+ E +DT +++++ ++ + KL+E G+P E+
Sbjct: 153 LLLLAMEAGANDLQET----EDT--------FEIITAPEDLAKVKQKLQEQGVPVESAEL 200
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ LLP TT+ ++ E L+ L +LDDV+ VY +
Sbjct: 201 T-LLPQTTVPLEGEEAVKVLRLVQALEDLDDVEEVYAN 237
>gi|154249785|ref|YP_001410610.1| hypothetical protein Fnod_1106 [Fervidobacterium nodosum Rt17-B1]
gi|171769425|sp|A7HM20.1|Y1106_FERNB RecName: Full=Probable transcriptional regulatory protein Fnod_1106
gi|154153721|gb|ABS60953.1| protein of unknown function DUF28 [Fervidobacterium nodosum
Rt17-B1]
Length = 252
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 82/132 (62%), Gaps = 2/132 (1%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
++GG NP +N L AVLEKA+E ++PKD VER+IK+ + E E + E +YE Y GGV
Sbjct: 36 AREGGGNPDTNPRLRAVLEKAREANMPKDTVERSIKKGTGELEGEKYEEIIYEAYAPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTD-ADKDQLLD 137
++ + LTD R+ +R ++ GG +A+ GSV + F R + I + +D D+
Sbjct: 96 ALYILALTDNKNRTAQELRHILSKNGGSLAESGSVAWIFERKGAIEISASKISDMDEFTL 155
Query: 138 IALDAGAEDVIE 149
+A+DAGAED+ E
Sbjct: 156 LAIDAGAEDIEE 167
>gi|289433685|ref|YP_003463557.1| hypothetical protein lse_0318 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289169929|emb|CBH26469.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 239
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 112/213 (52%), Gaps = 12/213 (5%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P SN L V+E+AK +VPK I++R I++A G E + E YE +G G
Sbjct: 34 AKSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPSGSM 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V+ LT+ + R+ + VR GG M GSV + F + ++ DA D+LL++
Sbjct: 94 IIVDALTNNVNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDA--DELLELL 151
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++A DV D +DED Y + +++ + L+ AGI T E++P
Sbjct: 152 MEADI-DV------RDISDEDGQAIIY---AEPEDFHAVQEGLKAAGIEEFTVAEIEMIP 201
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
I++ E +E ++LI L +L+DV VY +
Sbjct: 202 QNDIQLSGEDLEKFEKLIDALEDLEDVQKVYHN 234
>gi|256545408|ref|ZP_05472770.1| glucose-1-phosphate adenylyltransferase [Anaerococcus vaginalis
ATCC 51170]
gi|256398804|gb|EEU12419.1| glucose-1-phosphate adenylyltransferase [Anaerococcus vaginalis
ATCC 51170]
Length = 245
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 36/225 (16%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
V++GG NP N L A ++KAK ++P D +ER IK+AS A E++ YE Y GV
Sbjct: 36 VREGGDNPEYNPALKAAIDKAKAENMPNDNIERAIKKASGDTSGANFERIIYEGYAKDGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V+ LTD R+ +R + GG + GSVMF F R ++ I+ + D D+L+
Sbjct: 96 AVIVDCLTDNKNRTAPDIRHIFDKNGGNLGTDGSVMFMFNRKGLIEIEKDEIDFDELMLE 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI-------TTKLREAGIPFET 191
+D GAEDV TDE Y+++++ +++ + KL +A I +
Sbjct: 156 VIDFGAEDV---------TDEGDV---YQIITSVEDFQTVLDGIKKENYKLAKADISYIA 203
Query: 192 DNGSELLPITTIEVDDEAMELNKELIAKLLEL----DDVDAVYTD 232
DN L+ +A E N + I KL++ DDV VYT+
Sbjct: 204 DN---LI---------DAQESNNKQIMKLIDALEDNDDVQEVYTN 236
>gi|167755768|ref|ZP_02427895.1| hypothetical protein CLORAM_01283 [Clostridium ramosum DSM 1402]
gi|237734735|ref|ZP_04565216.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|365831399|ref|ZP_09372951.1| YebC/PmpR family DNA-binding regulatory protein [Coprobacillus sp.
3_3_56FAA]
gi|374625061|ref|ZP_09697478.1| YebC/PmpR family DNA-binding regulatory protein [Coprobacillus sp.
8_2_54BFAA]
gi|167704707|gb|EDS19286.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
ramosum DSM 1402]
gi|229382063|gb|EEO32154.1| conserved hypothetical protein [Coprobacillus sp. D7]
gi|365261876|gb|EHM91777.1| YebC/PmpR family DNA-binding regulatory protein [Coprobacillus sp.
3_3_56FAA]
gi|373916344|gb|EHQ48092.1| YebC/PmpR family DNA-binding regulatory protein [Coprobacillus sp.
8_2_54BFAA]
Length = 244
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 19/226 (8%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+G++ YL K GGP P N L ++EKAK+ VP D+++R I + E + EKV+
Sbjct: 26 YGKEIYLA-AKAGGPEPDGNLALRRLIEKAKKEQVPADVIKRAIDKVKSGVTENYEEKVF 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E Y GG +++V+ LTD I R++++VR K+ + GSV + + VV F
Sbjct: 85 EGYANGGATLIVKCLTDNINRTISSVRPAFTKSKAKLGNEGSVSYLYDVISVV--AFKGL 142
Query: 131 DKDQLLD--IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLR--EAG 186
D++ +LD + + A+D++ ED T K++ + I + ++
Sbjct: 143 DEETVLDALVMAEVDAQDIVS---EEDGT--------IKIIGEPTDLYKIKEAIEGIKSD 191
Query: 187 IPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
I FE D + LP T+E++ E MEL + L+ L + DDVD +Y +
Sbjct: 192 IEFEIDE-IQTLPQDTVELEGEDMELFERLMNNLNDCDDVDQIYHN 236
>gi|407778415|ref|ZP_11125679.1| hypothetical protein NA2_10578 [Nitratireductor pacificus pht-3B]
gi|407299786|gb|EKF18914.1| hypothetical protein NA2_10578 [Nitratireductor pacificus pht-3B]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKSGLPDPAMNPRLRLAVQNAKAQSMPKDNIERAIKKASGGDAENYEEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD RS + VR GG + + GSV F F R + + D D++++ A
Sbjct: 96 VIVEALTDNRNRSASNVRAAFTKAGGALGETGSVSFMFDRVGEIVYPASVGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV +DED + + ++ ++T+ L A E+ + P
Sbjct: 156 IEAGAEDV--------QSDEDG----HVITCGFEDIGEVTSALETALGEAESVK-AIWRP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T VD++ + +LIA L + DDV VY +
Sbjct: 203 QTGTPVDEDRAQSILKLIATLEDDDDVQNVYAN 235
>gi|390566281|ref|ZP_10246714.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390170464|emb|CCF86059.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ--EAFIEKVYEVYGYGG 77
V++GG NP N L +E+AK +P D ++R + +AS G E + +YE YG GG
Sbjct: 36 VREGGANPEGNLRLRMAIERAKREGMPNDTIDRALAKASGAGADVENWETVIYEGYGPGG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++ LT+ R+ + VR GG +A+ G+V ++F + + D D++
Sbjct: 96 VALLAIALTNSRNRTASEVRHAFTRHGGSLAEKGAVAWQFSVVGQIVVPAEGVDPDEVAL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A+DAGA DV E + E + + T + KLREAG+ + + E
Sbjct: 156 LAIDAGATDV------ESEDGE------IVITTEPGELTQVADKLREAGVSIQQTD-IEY 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P + I+V+ + +L+ L +LDDV +VYT+
Sbjct: 203 VPQSMIDVEPAQAQKTLKLLEALEDLDDVQSVYTN 237
>gi|357052976|ref|ZP_09114080.1| hypothetical protein HMPREF9467_01052 [Clostridium clostridioforme
2_1_49FAA]
gi|355386401|gb|EHG33441.1| hypothetical protein HMPREF9467_01052 [Clostridium clostridioforme
2_1_49FAA]
Length = 242
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D ++R IK+A+ E + YE YG GV
Sbjct: 36 VKEGGADPANNSKLRDVIAKAKANNMPNDTIDRGIKKAAGDANSVDYETLTYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + PGSV + F + +++ + D D+L+
Sbjct: 96 AIIVDTLTDNKNRTAANVRSAFTKGGGNVGTPGSVSYMFDKKGQIIIDKEECGMDPDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ALDAGAED E E+D+ Y+VV+ ++++ + L IP + +
Sbjct: 156 MLALDAGAEDFSE----EEDS--------YEVVTAPEDFSAVREALEAQSIPMMQADVT- 202
Query: 197 LLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 203 MIPQTWVELTDE 214
>gi|326382125|ref|ZP_08203817.1| hypothetical protein SCNU_04236 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198855|gb|EGD56037.1| hypothetical protein SCNU_04236 [Gordonia neofelifaecis NRRL
B-59395]
Length = 251
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP D +ER KR + + +YE YG GV
Sbjct: 37 RTGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGGGEEGGGADWQTIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E LTD R+ VR + GG MADPGSV + F R VV ++ D +D +L
Sbjct: 97 AILIECLTDNRNRAATDVRVAMTRNGGNMADPGSVSYLFTRKGVVTLEKGDQTEDDILMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V D E ++VVS + + + T L+EAGI +++ +
Sbjct: 157 VLDAGAEEVT-----------DLGET-FEVVSEAGDLIAVRTALQEAGIDYDSAE-PDFR 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD + +LI L + DDV VY++
Sbjct: 204 ASVEVAVDADGARKVMKLIDALEDSDDVQNVYSN 237
>gi|393762326|ref|ZP_10350953.1| hypothetical protein AGRI_05067 [Alishewanella agri BL06]
gi|392606561|gb|EIW89445.1| hypothetical protein AGRI_05067 [Alishewanella agri BL06]
Length = 247
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 114/209 (54%), Gaps = 14/209 (6%)
Query: 25 PNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVE 83
P+ +N L ++KA ++ +D +ER IKR A + E + E VYE YG GGV+++VE
Sbjct: 40 PDVAANPRLRLAVDKALSENMTRDTIERAIKRGAGMQDGEQYEELVYEGYGPGGVAVIVE 99
Query: 84 VLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG 143
+TD R+VA VR GG + GSV + F+R V+ + D+DQLL++ALDAG
Sbjct: 100 TMTDNNKRTVADVRHAFTKYGGNLGTSGSVAYMFQRKGVL-LFAPGIDEDQLLELALDAG 158
Query: 144 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTI 203
A+DV + DD ++ V+++ + ++ + L AG E+ + LLP T
Sbjct: 159 ADDV----QSHDDGSQE-------VLTSPEAFSAVKDALAAAGFTAESAEIT-LLPDTRA 206
Query: 204 EVDDEAMELNKELIAKLLELDDVDAVYTD 232
E+D E +++ L + DDV VY +
Sbjct: 207 ELDAETAARFIKMLDALEDSDDVQNVYHN 235
>gi|374985156|ref|YP_004960651.1| hypothetical protein SBI_02399 [Streptomyces bingchenggensis BCW-1]
gi|297155808|gb|ADI05520.1| hypothetical protein SBI_02399 [Streptomyces bingchenggensis BCW-1]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RTGGADPDGNPTLFDAIQKAKKQSVPNKNIDSAVKRGAGLEAGGAEYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L++ GI +++ + +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVISEATDLVAVRTALQKEGIDYDSAE-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +++++EA +LI L + DDV V+ +
Sbjct: 204 PTMQVQLEEEAARKIFKLIDALEDSDDVQNVFAN 237
>gi|406904303|gb|EKD46131.1| hypothetical protein ACD_69C00002G0002 [uncultured bacterium]
Length = 243
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 17/233 (7%)
Query: 4 KQSCIRGWGRKSYLRNV---KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 60
KQ ++G +R + K + ++N+ L ++KA ++ +D ++R IKR S +
Sbjct: 16 KQDAVKGKIFTKLIREITVAAKQSQDLSTNSKLRLAIDKALAQNMTRDTIDRAIKRGSGE 75
Query: 61 GQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRR 119
+E++ YE YG GV+I+V LTD R+ VR + GG + GSV + F++
Sbjct: 76 DANNHMEEIFYEGYGTNGVAILVHCLTDNRNRTAGDVRHIFTKHGGNLGTSGSVSYLFKQ 135
Query: 120 ARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDIT 179
+ ++ +++D+++ +ALDAGAED+I R + +V++ +N+T I
Sbjct: 136 SGIICFP-PGSNEDKIMQVALDAGAEDIIS-----------RDDASVEVLTAPENFTKIK 183
Query: 180 TKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T + ++G+ S L I + +D EA ELI L ELDDV VY++
Sbjct: 184 TAMEKSGLVAAAAEISMLASI-QVPLDKEASVKVMELIDALEELDDVQNVYSN 235
>gi|405383322|ref|ZP_11037091.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF142]
gi|397320285|gb|EJJ24724.1| DNA-binding regulatory protein, YebC/PmpR family [Rhizobium sp.
CF142]
Length = 248
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+PT N L ++ AK +PKD ++R IK+AS E + E YE YG GG +
Sbjct: 36 AKAGLPDPTMNARLRLAIQNAKAQSMPKDNIDRAIKKASGADTENYDEVRYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE LTD R+ + VR + GG + + GSV F F + K + D D++++ A
Sbjct: 96 IIVEALTDNRNRTASNVRSIFTKAGGALGETGSVSFSFDHVGEITYKLSAGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGA+DV +TDE E +Y ++T+ K EA + +
Sbjct: 156 IEAGADDV--------ETDE---EGHY--ITTAFEALGEVAKALEASLGEAETVKAVWRA 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD+E + LI L + DDV VY++
Sbjct: 203 QNNVPVDEERAQSLLRLIDSLEDDDDVQNVYSN 235
>gi|147677359|ref|YP_001211574.1| hypothetical protein PTH_1024 [Pelotomaculum thermopropionicum SI]
gi|189038544|sp|A5D3F8.1|Y1024_PELTS RecName: Full=Probable transcriptional regulatory protein PTH_1024
gi|146273456|dbj|BAF59205.1| uncharacterized conserved protein [Pelotomaculum thermopropionicum
SI]
Length = 243
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
++GG +P SN L A +++AKE +VP + + R I++ + E G + E +YE YG GG
Sbjct: 36 ARQGGGDPESNVRLKAAIQRAKEANVPNENIMRAIQKGTGELGGANYEEIIYEGYGPGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
++++E++TD R+ +R + GG + + G V MF+ + VV K ++ D+D L+
Sbjct: 96 AVMIEIMTDNRNRTAGEIRHIFARNGGSLGETGCVAWMFEEKGLIVVEKKGSEPDEDSLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+AL+AGA+D +ED Y++ + + + L AG+ +
Sbjct: 156 LLALEAGADDF--------KAEEDS----YEITTAPGDLQKVRGALEGAGVKIALAEVA- 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT++++ + E L+ L E DDV VY +
Sbjct: 203 MIPQTTVKLEGDDAERMTRLVDALEEHDDVQNVYAN 238
>gi|365903663|ref|ZP_09441486.1| hypothetical protein LmalK3_09053 [Lactobacillus malefermentans
KCTC 3548]
Length = 245
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P +N L V+EKA+ ++PKD V+R I +AS G F E YE YG GG +
Sbjct: 36 AKAGDPDPANNPQLRLVMEKARSANMPKDNVQRAIDKASGLGGAKFEEITYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIK-FTDADKDQLLD 137
++V LTD R+ AAVR GG + GSV + F R+ +V ++ D D+D +L
Sbjct: 96 VMVLALTDNKNRTAAAVRSAFTHHGGALGTDGSVSYMFDRKGYIVILRDGLDTDEDTMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGAED+ +T +D +++ +T + + L+ +T + +
Sbjct: 156 DALDAGAEDM--------NTTDDA----FEIYTTPSDMPSVRDALQAKKYDLDTAEVT-M 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
P +EV ++ + LI +L DDV VY
Sbjct: 203 FPENVMEVPEDKTSQYQGLIDELESDDDVSDVY 235
>gi|404371603|ref|ZP_10976907.1| YebC/PmpR family DNA-binding regulatory protein [Clostridium sp.
7_2_43FAA]
gi|226912271|gb|EEH97472.1| YebC/PmpR family DNA-binding regulatory protein [Clostridium sp.
7_2_43FAA]
Length = 245
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 15/197 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGV 78
VK GGP P +N L V+ KAK ++P D + R+IK+AS + EK VYE YG GV
Sbjct: 36 VKNGGPVPDTNPKLRDVIAKAKAANMPNDTITRSIKKASGELAGVDYEKIVYEGYGPSGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD RS VR GG M G V F F+ + I+ D D+D+++ +
Sbjct: 96 AVIVETLTDNKNRSAGNVRSAFTKGGGNMGATGCVGFMFQEKGEIVIEREDKDEDEIMML 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
ALDAGAED E + + +T +++ + L G+ F + +++
Sbjct: 156 ALDAGAEDFA------------AEEEVFVITTTPEDFGTVREALESNGLEF-LEAAVKMV 202
Query: 199 PITTIEVD-DEAMELNK 214
P T E++ D+A + K
Sbjct: 203 PDTYTEINEDDAKKFQK 219
>gi|339061779|ref|ZP_08648998.1| hypothetical protein imdm_2182 [gamma proteobacterium IMCC2047]
gi|330720193|gb|EGG98578.1| hypothetical protein imdm_2182 [gamma proteobacterium IMCC2047]
Length = 244
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 21/232 (9%)
Query: 5 QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK 60
Q RG ++R + + GG +P N L +++AK ++PKD ++R I R
Sbjct: 17 QDAKRGKIFTRFIRELTVAARAGGGDPEDNPRLRLAVDRAKSANMPKDTMQRAIDRGVGG 76
Query: 61 GQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRA 120
E E YE YG GV+++VE +TD R+VA VR GG + GSV + F +
Sbjct: 77 EGENLEEITYEGYGQAGVAVLVETMTDNRNRTVAEVRHAFTKFGGNLGTDGSVSYLFTKQ 136
Query: 121 RVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITT 180
+ + AD+D +++ AL+AGA+DV+ N+D++ VV+T ++++
Sbjct: 137 GQITFE-PGADEDAIMEAALEAGADDVV---TNDDES--------IDVVTTPAEFSNVKD 184
Query: 181 KLREAGI-PFETDNGSELLPITTIEVD-DEAMELNKELIAKLLELDDVDAVY 230
L AG+ P + ++P T++++D D A ++ K LI L ELDDV V+
Sbjct: 185 ALEAAGLEPVNAE--VAMVPSTSVDLDVDTATKVMK-LIDMLEELDDVQNVF 233
>gi|225024075|ref|ZP_03713267.1| hypothetical protein EIKCOROL_00943 [Eikenella corrodens ATCC
23834]
gi|224943100|gb|EEG24309.1| hypothetical protein EIKCOROL_00943 [Eikenella corrodens ATCC
23834]
Length = 242
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 16/214 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGGVSI 80
GG +P SN L ++KA + ++PKD V+R I + + +G E +IE YE YG GG ++
Sbjct: 39 GGGDPASNPRLRLAMDKAWDANMPKDNVQRAIDKGTGNLEGVE-YIELRYEGYGIGGAAL 97
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+V+ LTD TR+VA VR GG + G V F F+ + + D ++D L++ AL
Sbjct: 98 MVDCLTDNKTRTVADVRHAFSKHGGNLGTDGCVAFNFKHQGYL-LFGPDTEEDALMEAAL 156
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AGAEDV V DD ++V++ +++ I L AG E + +
Sbjct: 157 EAGAEDV----VAHDDGS-------FEVITAPNDWAGIKAALETAGFKAEDGDVTMRAQN 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
+ ++A ++ + LI L LDDV VYT +
Sbjct: 206 EAVLTGEDAAKMQR-LIDALEALDDVQDVYTSAV 238
>gi|404406398|ref|ZP_10997982.1| hypothetical protein AJC13_13288 [Alistipes sp. JC136]
Length = 241
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 23/238 (9%)
Query: 3 RKQSCIRGWGRKSYLRN---------VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK ++ WG + + VK GG +P++NT L +++ AK ++PK+ +ER
Sbjct: 8 RKARKMKRWGHMARVFTKLGKEIEIAVKAGGSDPSANTRLRILIQNAKAENMPKENIERA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRA+EK + E +YE YG G++ +VE TD R+VA VR CGG + + GSV
Sbjct: 68 IKRATEKDAADYKEVIYEGYGPHGIAFLVETATDNTNRTVANVRMYFNKCGGTLGNSGSV 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F V + + + L++ ++I+ V+E T+ED Y + +
Sbjct: 128 GFMFDHKCVFKFRAAEGVDPEELEL-------EMIDLGVDEFYTEEDGITVY----APYE 176
Query: 174 NYTDITTKLREAGIPFETDNGSEL-LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
++ I L + G FE +G + +P E+D E E ++L+ KL + DDV VY
Sbjct: 177 SFGAIQKWLDDKG--FEIVSGESVRIPTDVKELDAEGRESVEKLVEKLEDDDDVVNVY 232
>gi|375084727|ref|ZP_09731586.1| YebC/PmpR family DNA-binding regulatory protein [Megamonas
funiformis YIT 11815]
gi|374567862|gb|EHR39061.1| YebC/PmpR family DNA-binding regulatory protein [Megamonas
funiformis YIT 11815]
Length = 243
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 23/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI RA +KG A + E +YE YG
Sbjct: 36 VRMGGADPTGNMRLKLALSKAKSNNIPKD----NINRAIQKGLGASDGSNYEELIYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKD 133
G ++++EV+TD R+ A +R + GG + + G V + F + + + K D++
Sbjct: 92 PAGSAVMLEVMTDNRNRTAADIRHLFSKYGGNLGETGCVGWMFHKKAIFVVDKEAFDDEE 151
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
L+ IALDAGAED EDD+ +++ + +++ I+ L E I ++
Sbjct: 152 SLMMIALDAGAEDFKA----EDDS--------FEITAAPEDFDAISQALEENNIE-TVES 198
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT++V+ + E + LI L E DDV VY++
Sbjct: 199 EITMIPDTTVKVEGKDAEKMQTLIDMLEEHDDVQNVYSN 237
>gi|373460264|ref|ZP_09552017.1| UPF0082 protein [Prevotella maculosa OT 289]
gi|371955911|gb|EHO73707.1| UPF0082 protein [Prevotella maculosa OT 289]
Length = 242
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 114/242 (47%), Gaps = 24/242 (9%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK + ++ WG K VK GGP P +N L A++ K ++PKD +ER
Sbjct: 8 RKATKLKRWGHMARVFTKLGKQIAIAVKAGGPEPENNPTLRALIANCKRENMPKDNIERA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK A K Q + E YE YG GV+++V+ LTD TR+VA VR V G M GS+
Sbjct: 68 IKNAMGKDQSEYKEVTYEGYGPHGVAVLVDTLTDNTTRTVADVRSVFNKFSGNMGTTGSL 127
Query: 114 MFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
F F V K + D D+L+ +D G ED DED E +
Sbjct: 128 SFLFDHKSVFTFKKKEGLDMDELILDLIDYGVEDE---------YDEDEEENEITIYGDP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
++ DI L G FE G+E +P +V EA E +++ KL E DDV VY
Sbjct: 179 KSFGDIQKHLESEG--FEV-TGAEFTYIPNDLKDVTAEARETIDKMVEKLEEFDDVQTVY 235
Query: 231 TD 232
T+
Sbjct: 236 TN 237
>gi|312880158|ref|ZP_07739958.1| protein of unknown function DUF28 [Aminomonas paucivorans DSM
12260]
gi|310783449|gb|EFQ23847.1| protein of unknown function DUF28 [Aminomonas paucivorans DSM
12260]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 17/222 (7%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEV 72
K+ + K GG +P +N L +++A+E +VP D +ER IK+ S + + A ++V YE
Sbjct: 30 KAVIAAAKAGGGDPNANFRLKVAIDRAREGNVPMDNIERAIKKGSGEIEGAIYDEVTYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GV+I+VE LTD R+ +R + GG + + G V + F R V+ ++ D+
Sbjct: 90 YGPAGVAIMVETLTDNRNRTAPEMRSLFTKSGGAIGEAGCVAWNFERRGVIRVEGKGIDE 149
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
+ LL +A +AGA+D + DD + V + +++ L+ AG P E+
Sbjct: 150 EALLGVAAEAGADD-----LQGDDEG-------FDVYCDPSSLSEVGIALKGAGYPVESM 197
Query: 193 NGSELLPITTIEV--DDEAMELNKELIAKLLELDDVDAVYTD 232
S ++P T+ + DEA +L ++ + E DDV VY +
Sbjct: 198 EIS-MVPKNTVSITRKDEASKL-LTMVERFEEHDDVQNVYAN 237
>gi|311745190|ref|ZP_07718975.1| hypothetical protein ALPR1_01785 [Algoriphagus sp. PR1]
gi|126577712|gb|EAZ81932.1| hypothetical protein ALPR1_01785 [Algoriphagus sp. PR1]
Length = 235
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 119/239 (49%), Gaps = 22/239 (9%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK+ + W + K + VK GGP+PT+N L V++ AK +PKD +E
Sbjct: 8 RKERKFKRWDKMSKVFTRLGKEIVMAVKSGGPDPTANPRLRTVIQNAKGAQMPKDRIEAA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IKRAS K ++ + E VYE YG G++++VE TD I R+VA +R GG + GSV
Sbjct: 68 IKRASNKDEKDYEELVYEGYGPFGIAVIVETSTDNINRTVANIRSYFTKAGGSLGTSGSV 127
Query: 114 MFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSD 173
F F V + D ++L +D G ++ DE+ E + V +
Sbjct: 128 SFMFDHKAVFRFDKGELDMEELEFELIDFGLSEI----------DENEGELF--VYTEFA 175
Query: 174 NYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ + L E GI + + + P T E+ +E E+ ++I K+ E DDV+ VYT+
Sbjct: 176 DFGSMQKALEEKGIEVISAD-FQRFPTTLTELTEEQEEIIHKMIDKMEEDDDVNNVYTN 233
>gi|377809490|ref|YP_005004711.1| hypothetical protein PECL_744 [Pediococcus claussenii ATCC BAA-344]
gi|361056231|gb|AEV95035.1| hypothetical protein PECL_744 [Pediococcus claussenii ATCC BAA-344]
Length = 245
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 111/213 (52%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P++N L +++KA+ ++PKD V+R + + S ++ E YE YG G +
Sbjct: 36 VKAGGPDPSANPQLRLMMDKARAANMPKDNVKRAVDKGSGSDGASYEEITYEGYGPAGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQ--LLD 137
I+VE LTD R+ AA+R GG + GSV + F R + I D DKD+ +++
Sbjct: 96 IIVETLTDNKNRTAAAIRSAFTHHGGSLGAAGSVSYMFDRKGYIVITREDLDKDEDAMME 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
A++AGA+DV ++ +++ + ++ ++ L G T + +
Sbjct: 156 DAINAGADDV------------QTSDEVFEIYTDPKSFAEVRDALEADGYELATAELT-M 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+P EV ++ ++ LI +L + DDV VY
Sbjct: 203 IPENETEVPEDKVKQYTGLIDELEDNDDVSEVY 235
>gi|184155017|ref|YP_001843357.1| hypothetical protein LAF_0541 [Lactobacillus fermentum IFO 3956]
gi|260663412|ref|ZP_05864303.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
gi|226707713|sp|B2GB45.1|Y541_LACF3 RecName: Full=Probable transcriptional regulatory protein LAF_0541
gi|183226361|dbj|BAG26877.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260552264|gb|EEX25316.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length = 247
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P +N L V++KA+ ++PK ++R I +A+ G F E YE YG GGV+
Sbjct: 36 AKAGDPDPDNNPQLRLVMDKARAANMPKQNIQRAIDKATGAGGANFEEITYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
++V LTD R+ AA+R GG + GSV + F R ++ I D D+D +L
Sbjct: 96 VMVFCLTDNKNRTAAAIRSAFTHSGGSLGATGSVSYMFNRQGLIEILRDGLDKDEDDMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ TD+ +++ + T + L+E G ET + +
Sbjct: 156 DALDAGADDMQA-------TDDK-----FQIFTDPSAMTSVRDALQEQGYELETAEVT-M 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+P +V + + + LI +L + DDV VY
Sbjct: 203 IPENKTKVPADKVGQYQHLIDELEDNDDVADVY 235
>gi|15677497|ref|NP_274653.1| hypothetical protein NMB1648 [Neisseria meningitidis MC58]
gi|385850810|ref|YP_005897325.1| hypothetical protein NMBM04240196_0588 [Neisseria meningitidis
M04-240196]
gi|385852754|ref|YP_005899268.1| hypothetical protein NMBH4476_0579 [Neisseria meningitidis H44/76]
gi|416160215|ref|ZP_11606105.1| hypothetical protein NMXN1568_0540 [Neisseria meningitidis N1568]
gi|416195771|ref|ZP_11617847.1| hypothetical protein NMBCU385_0543 [Neisseria meningitidis CU385]
gi|418288807|ref|ZP_12901237.1| hypothetical protein NMY233_1516 [Neisseria meningitidis NM233]
gi|418291075|ref|ZP_12903137.1| hypothetical protein NMY220_1536 [Neisseria meningitidis NM220]
gi|421551307|ref|ZP_15997302.1| hypothetical protein NMEN69166_1732 [Neisseria meningitidis 69166]
gi|421559671|ref|ZP_16005541.1| hypothetical protein NMEN92045_1644 [Neisseria meningitidis 92045]
gi|421561674|ref|ZP_16007513.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM2657]
gi|421568130|ref|ZP_16013858.1| hypothetical protein NMEN3001_1708 [Neisseria meningitidis NM3001]
gi|427827158|ref|ZP_18994201.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|433465622|ref|ZP_20423096.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM422]
gi|433471982|ref|ZP_20429362.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 68094]
gi|433473041|ref|ZP_20430405.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97021]
gi|433478154|ref|ZP_20435469.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70012]
gi|433481590|ref|ZP_20438855.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2006087]
gi|433483575|ref|ZP_20440805.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2002038]
gi|433486787|ref|ZP_20443978.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97014]
gi|433488825|ref|ZP_20445979.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M13255]
gi|433491009|ref|ZP_20448126.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM418]
gi|433505491|ref|ZP_20462426.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9506]
gi|433507638|ref|ZP_20464541.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9757]
gi|433509804|ref|ZP_20466665.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 12888]
gi|433511838|ref|ZP_20468656.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 4119]
gi|433526643|ref|ZP_20483268.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 69096]
gi|433539446|ref|ZP_20495917.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70030]
gi|33517103|sp|Q9JYC7.1|Y1648_NEIMB RecName: Full=Probable transcriptional regulatory protein NMB1648
gi|7226899|gb|AAF41997.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984991|gb|EFV63945.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325128682|gb|EGC51548.1| hypothetical protein NMXN1568_0540 [Neisseria meningitidis N1568]
gi|325140707|gb|EGC63221.1| hypothetical protein NMBCU385_0543 [Neisseria meningitidis CU385]
gi|325199758|gb|ADY95213.1| hypothetical protein NMBH4476_0579 [Neisseria meningitidis H44/76]
gi|325205633|gb|ADZ01086.1| hypothetical protein NMBM04240196_0588 [Neisseria meningitidis
M04-240196]
gi|372200528|gb|EHP14593.1| hypothetical protein NMY220_1536 [Neisseria meningitidis NM220]
gi|372200982|gb|EHP14966.1| hypothetical protein NMY233_1516 [Neisseria meningitidis NM233]
gi|402328068|gb|EJU63449.1| hypothetical protein NMEN69166_1732 [Neisseria meningitidis 69166]
gi|402334788|gb|EJU70065.1| hypothetical protein NMEN92045_1644 [Neisseria meningitidis 92045]
gi|402336979|gb|EJU72234.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM2657]
gi|402342436|gb|EJU77601.1| hypothetical protein NMEN3001_1708 [Neisseria meningitidis NM3001]
gi|432201584|gb|ELK57663.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM422]
gi|432207023|gb|ELK63019.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 68094]
gi|432210642|gb|ELK66598.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97021]
gi|432214081|gb|ELK69989.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70012]
gi|432217421|gb|ELK73289.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2006087]
gi|432221005|gb|ELK76821.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97014]
gi|432221700|gb|ELK77505.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2002038]
gi|432222010|gb|ELK77811.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M13255]
gi|432226267|gb|ELK81999.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM418]
gi|432239807|gb|ELK95352.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9506]
gi|432240184|gb|ELK95725.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9757]
gi|432245514|gb|ELL00983.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 12888]
gi|432246090|gb|ELL01549.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 4119]
gi|432259275|gb|ELL14547.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 69096]
gi|432272203|gb|ELL27316.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70030]
Length = 242
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 30/224 (13%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGG 77
+ GG +P SN L LEKA E ++PKD V+R I + + +G E +IE YE YG GG
Sbjct: 36 ARMGGGDPGSNPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVE-YIELRYEGYGIGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+++V+ LTD TR+VA VR GG + G V F F + + D+D L++
Sbjct: 95 AALMVDCLTDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFE-PGVDEDALME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAG-------IPFE 190
AL+AGAEDV+ N+D + E V++ +++ + + L AG +
Sbjct: 154 AALEAGAEDVV---TNDDGSIE--------VITAPNDWAGVKSALEAAGYKSVDGDVTMR 202
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
N +EL D+A+++ K LI L +LDDV VYT +
Sbjct: 203 AQNETEL-------SGDDAVKMQK-LIDALEDLDDVQDVYTSAV 238
>gi|299144379|ref|ZP_07037459.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518864|gb|EFI42603.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 246
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 18/217 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GGP+P N L ++KAK ++P D +ER IK+ + ++ E++ YE YG G+
Sbjct: 36 VKEGGPDPEYNPSLKVAIDKAKAENMPNDNIERAIKKGAGADADSNYEEITYEGYGPSGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+I+V LTD R+ +R GG + PG V F F + + I+ TD+ D D+L+
Sbjct: 96 AIMVNCLTDNRNRTAPDIRHAFDKYGGNLGQPGCVSFMFDKKGQLGIEKTDSIDADELMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
A++ GA+DVI DR E +++++ + Y + L E G F + S
Sbjct: 156 SAIELGADDVI-----------DR-EDVFEILTAPEEYHVVRNGLEEMGYEFIHSDIS-Y 202
Query: 198 LP--ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T +E +D+ ++ K LI L + DDV VYT+
Sbjct: 203 IPQNYTALESEDDIKKMIK-LIDILEDNDDVQEVYTN 238
>gi|295839914|ref|ZP_06826847.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|197696743|gb|EDY43676.1| conserved hypothetical protein [Streptomyces sp. SPB74]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ +KR + E G + +YE YG GV
Sbjct: 37 RMGGADLEGNPTLFDAVQKAKKQSVPNKNIDSAMKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVVVPKGELGEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E ++V+S + + + T L+EAGI +++ + + +
Sbjct: 157 VLDAGAEEV-------NDLGES-----FEVLSEATDLVAVRTALQEAGIDYDSAD-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|167035197|ref|YP_001670428.1| hypothetical protein PputGB1_4204 [Pseudomonas putida GB-1]
gi|166861685|gb|ABZ00093.1| protein of unknown function DUF28 [Pseudomonas putida GB-1]
Length = 248
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 18/236 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + K+GGP+P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGTNESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ ++D L++ A++A A+DV+ ++V ++ +++
Sbjct: 134 FERKGQISFA-PGVEEDALMEAAMEADADDVVANDDGS-----------FEVFTSFNSFY 181
Query: 177 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L EAG D + P T+ E+D + E +LI L +LDDV VY++
Sbjct: 182 AVRNALEEAGFK-AADAEIVMQPTTSAELDQDGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|427390112|ref|ZP_18884518.1| YebC/PmpR family DNA-binding regulatory protein [Actinobaculum
massiliae ACS-171-V-Col2]
gi|425733127|gb|EKU95933.1| YebC/PmpR family DNA-binding regulatory protein [Actinobaculum
massiliae ACS-171-V-Col2]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
+ GG +P N L ++KAK VP D ++R +KR S + ++ + +YE YG G
Sbjct: 36 ARTGGGDPDGNPTLYDAIQKAKRASVPADNIDRAVKRGSGETDDSVQYESIMYEGYGPNG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+I++E LTD R+ + VR + GG +ADPGSV + F R +V + +D +L
Sbjct: 96 VAILIECLTDNRNRAASEVRTALSRNGGSLADPGSVAYLFNRRGIVEAVKGENTEDDILM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
LDAGAE+V E A + + S + + T L+E GI + + S+
Sbjct: 156 AVLDAGAEEVSE------------AGDVFIIESDPKDIVAVRTALQENGIEYNSAE-SKW 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T + +D E + +L L ++DD+ V+T+
Sbjct: 203 VPSTEVPLDIEGAKKVLKLTDALDDVDDIQEVFTN 237
>gi|350264952|ref|YP_004876259.1| hypothetical protein GYO_0945 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597839|gb|AEP85627.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 258
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G P+P SN L VLE+AK VPK+I+ER I++A +E F E Y
Sbjct: 45 FGREIYVA-AKQGEPDPESNQALKVVLERAKTYSVPKNIIERAIEKAKGGAEENFDELRY 103
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+V+ LT+ + R+ VR GG M GSV + F V+ + A
Sbjct: 104 EGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVDGKTA 163
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D+ + + D D++E EDD+ V + D + + + AG+
Sbjct: 164 DEALEILMEADVDVRDILE----EDDS--------VIVYAEPDQFHAVQEAFKNAGVEEF 211
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +L + + + D+A E ++LI L +L+DV VY +
Sbjct: 212 TVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLEDVQQVYHN 253
>gi|422417841|ref|ZP_16494796.1| hypothetical protein NT03LS_0469 [Listeria seeligeri FSL N1-067]
gi|422420956|ref|ZP_16497909.1| hypothetical protein NT04LS_0438 [Listeria seeligeri FSL S4-171]
gi|313634918|gb|EFS01318.1| hypothetical protein NT03LS_0469 [Listeria seeligeri FSL N1-067]
gi|313639563|gb|EFS04389.1| hypothetical protein NT04LS_0438 [Listeria seeligeri FSL S4-171]
Length = 239
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 12/212 (5%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K G P+P SN L V+E+AK +VPK I++R I++A G E + E YE +G G I
Sbjct: 35 KSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPSGSMI 94
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+V+ LT+ + R+ + VR GG M GSV + F + ++ DA D+LL++ +
Sbjct: 95 IVDALTNNVNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDA--DELLELLM 152
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+A DV D +DED Y + +++ + L+ AGI T E++P
Sbjct: 153 EADI-DV------RDISDEDGQAIIY---AEPEDFHAVQEALKAAGIEEFTVAEIEMIPQ 202
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
I++ E +E ++LI L +L+DV VY +
Sbjct: 203 NDIQLTGEDLEKFEKLIDALEDLEDVQKVYHN 234
>gi|163745948|ref|ZP_02153307.1| hypothetical protein OIHEL45_10188 [Oceanibulbus indolifex HEL-45]
gi|161380693|gb|EDQ05103.1| hypothetical protein OIHEL45_10188 [Oceanibulbus indolifex HEL-45]
Length = 246
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L +++AK +PKD +ER IK+A E + E YE YG GV+
Sbjct: 36 AKMGDPDPEKNPRLRMAVKEAKGQSMPKDNIERAIKKAIGGEGEDYEEIRYEGYGPNGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE +TD R+ + VR GG + + GSV F F R V + D D ++ A
Sbjct: 96 VIVEAMTDNRNRTASTVRSTFTKNGGNLGETGSVGFMFERKGEVIYPASVGDADTVMMAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV + +E + + T + D++T L EA + P
Sbjct: 156 IEAGAEDV------------ESSEDGHVIYCTDTDLNDVSTAL-EAELGESESTKLIWRP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TT E+D EAME +L+ L E DDV V T+
Sbjct: 203 TTTTEMDLEAMEKLMKLVDALEEDDDVQRVTTN 235
>gi|323142286|ref|ZP_08077118.1| DNA-binding regulatory protein, YebC/PmpR family
[Phascolarctobacterium succinatutens YIT 12067]
gi|322413170|gb|EFY04057.1| DNA-binding regulatory protein, YebC/PmpR family
[Phascolarctobacterium succinatutens YIT 12067]
Length = 246
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 23/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-----EAFIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI+RA +KG ++F E YE YG
Sbjct: 36 VRMGGADPTGNMKLKLALSKAKANNIPKD----NIQRAIQKGAGALEGQSFEEITYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKF-TDADKD 133
GV+++V LTD R+ A VR V GG + G V + F++ + + T +D
Sbjct: 92 PAGVAMMVSCLTDNRNRTAADVRHVFSKHGGNLGASGCVSYMFKQKGIFAVSAETGVSED 151
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
L+ IALDAGAED+ +E +++++ Y D+ L + I
Sbjct: 152 DLMMIALDAGAEDI------------KSSEDGFEIITDPAAYDDVEKALADNNIEVAMSE 199
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++P T E+ E E ++++ L + DDV VYT+
Sbjct: 200 IT-MVPDTMAELSGEDAEKVQKMLDALDDCDDVQDVYTN 237
>gi|116329114|ref|YP_798834.1| hypothetical protein LBL_2537 [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|122283104|sp|Q04YE4.1|Y2537_LEPBL RecName: Full=Probable transcriptional regulatory protein LBL_2537
gi|116121858|gb|ABJ79901.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 116/213 (54%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER IK+ + + + E+ +YE +G G++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGELEGVVYEECLYECFGPAGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDLA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE + Y+V++T D+Y + L E G+ E +
Sbjct: 157 VGEGAEDVI----NEGEV--------YRVITTPDDYESVLHALNEKGLKSEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
I++ D E + +LI +L DDV +V ++
Sbjct: 205 ISSEIADKEVAKKVMKLIEQLDGHDDVTSVTSN 237
>gi|338536184|ref|YP_004669518.1| hypothetical protein LILAB_32795 [Myxococcus fulvus HW-1]
gi|337262280|gb|AEI68440.1| hypothetical protein LILAB_32795 [Myxococcus fulvus HW-1]
Length = 233
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 114/211 (54%), Gaps = 14/211 (6%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIV 81
GG P+ N L L A+E ++PKD +ER IK+ + E E + E YE YG GGV+I+
Sbjct: 23 GGGEPSGNARLRVALAAAREANIPKDTIERAIKKGTGELEGERYEEVTYEGYGPGGVAIL 82
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
VE LTD R+ A +R GG + G+V + F++ V+ +K +DQL++ A+D
Sbjct: 83 VECLTDNRNRTAADMRSTFSAYGGNLGAEGAVAWMFQKKGVIGVK-QGPSEDQLMEQAID 141
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT 201
AGAEDVI + D+ E R + +D +T + +L+EAG+P P
Sbjct: 142 AGAEDVI---MLGDEGAEVR-------TAAADLHT-VAGRLQEAGLPLSQQRWG-FFPQN 189
Query: 202 TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ +D + + +L+ L E DDV +V+ +
Sbjct: 190 TVALDVDTAKKLLKLLDALEENDDVQSVHGN 220
>gi|418576904|ref|ZP_13141036.1| hypothetical protein SSME_20920 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379324569|gb|EHY91715.1| hypothetical protein SSME_20920 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 238
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 17/224 (7%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+G++ Y+ K G P+P SN L LE+AK VP I+E+ I++A G+E + E Y
Sbjct: 26 FGKEIYVA-AKSGEPDPESNQALRLTLERAKTYSVPNHIIEKAIEKAKGSGEENYDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+V+ LTD + R+ + VR GG M GSV + F V I+
Sbjct: 85 EGFGPSGSMIIVDALTDNVNRTASDVRAAFGKNGGNMGVSGSVAYMFEYTAVFGIE---- 140
Query: 131 DKDQLLDIALDAGAEDVIEPPVNED-DTDEDRAERYYKVV-STSDNYTDITTKLREAGIP 188
D A+D++E + +D D + E +V + D + + LRE G+
Sbjct: 141 ----------DKSADDILEALMEQDIDVRDVIDENGLTIVYAEPDQFAQVQDALRETGVD 190
Query: 189 FETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
E+LP T IE+ E E + L+ L +LDDV V+ +
Sbjct: 191 TFKVAEFEMLPQTDIELSAEDQETFETLVEALEDLDDVQNVFHN 234
>gi|373499542|ref|ZP_09589950.1| hypothetical protein HMPREF9140_00068 [Prevotella micans F0438]
gi|371957258|gb|EHO75025.1| hypothetical protein HMPREF9140_00068 [Prevotella micans F0438]
Length = 243
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 111/240 (46%), Gaps = 20/240 (8%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK + ++ WG K VK GGP P +N L A++ K ++PKD ++R
Sbjct: 8 RKAAKLKRWGHMARTFTKLGKEIAIAVKAGGPEPENNPRLRAIIATCKRENMPKDNIQRA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK A K Q + E YE YG G+++ VE LTD TR+V VR V G + GS+
Sbjct: 68 IKNAMGKDQSEYKEVTYEGYGPHGIAVFVETLTDNTTRTVGDVRSVFNKFNGNLGTQGSL 127
Query: 114 MFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
F F V K D D D+++ +D G +D E D D + E +
Sbjct: 128 SFLFDHKAVFTFKKKDGIDMDEIILELIDYGVDD-------EFDVDNEEGE--VTIYGEP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ +I L + G + + +P +VD E E +++ +L + DDV VYT+
Sbjct: 179 TSFGEIQKHLEDNGFEITSAEFTR-IPNDLKDVDAEERETIDKMVERLEDFDDVQNVYTN 237
>gi|160946336|ref|ZP_02093545.1| hypothetical protein PEPMIC_00296 [Parvimonas micra ATCC 33270]
gi|158447452|gb|EDP24447.1| DNA-binding regulatory protein, YebC/PmpR family [Parvimonas micra
ATCC 33270]
Length = 247
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P N L +EKAK ++P D +ER +K+ + G + E + YE YG G+
Sbjct: 36 VKEGGADPEYNPSLKTAIEKAKAENMPNDNIERALKKGAGDGDSSNYETIIYEGYGPEGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++VVE LTD R+ A VR GG + GSV+F F + V+ I A++D L+D
Sbjct: 96 AVVVECLTDNRNRTAADVRHAFDKHGGNLGQNGSVLFMFEKKGVIVISRDQAEEDDLMDF 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+ GA D + E Y + S ++ + L+E G F E +
Sbjct: 156 ALENGASDF------------ESDEEVYTIYSEVSDFITLRDALQEKGYTFSACE-LEYV 202
Query: 199 PITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
P ++ + + ++ ++I +L + DDV VY +
Sbjct: 203 PNNNSQISNPDNIKKMVKMIDQLEDNDDVQNVYHN 237
>gi|312139492|ref|YP_004006828.1| hypothetical protein REQ_20850 [Rhodococcus equi 103S]
gi|311888831|emb|CBH48143.1| conserved hypothetical protein [Rhodococcus equi 103S]
Length = 289
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGGV 78
+ GG +P+ N L ++KAK+ VP D +ER KR + + +YE YG GV
Sbjct: 76 RTGGGDPSGNPTLYDAIQKAKKSSVPNDNIERARKRGGGEEAGGADWQTIMYEGYGPNGV 135
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG MADPGSV + F R VV ++ +D LL+I
Sbjct: 136 AVLIECLTDNRNRAAGEVRTAMTRNGGNMADPGSVSYLFTRKGVVVLEKNGRTEDDLLEI 195
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAE++ +D E +++V + + + T L +AG+ +E+ + +
Sbjct: 196 VLEAGAEEI-------NDLGES-----FEIVCEAGDLIPVRTALVDAGVDYESAD-PDFR 242
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ VD E +L+ L + DDV VYT+
Sbjct: 243 ASVEVPVDAEGARKVFKLVDALEDSDDVQNVYTN 276
>gi|404328503|ref|ZP_10968951.1| hypothetical protein SvinD2_00350 [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 241
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 17/222 (7%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K + GG +P N L +EKAK ++P D + R IK+A+ + + E YE
Sbjct: 30 KDIFLEARHGGGDPDMNAGLRHAIEKAKSANMPNDNISRAIKKATGDLDGVTYDEITYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-D 131
YG GGV+++V+VLTD RS + +R GG + + GSV F F + ++ I+ D D
Sbjct: 90 YGPGGVAVMVDVLTDNRNRSASEIRHAFTKSGGNLGESGSVAFMFDKQGLIEIEKKDGLD 149
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
+DQ++ A+DAGA+D+ T EDR + + + D++ + L + G +E
Sbjct: 150 EDQVMMDAIDAGADDLR--------TGEDR----FIITTDPDSFDAVKDALEKKG--YEI 195
Query: 192 DNGS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
D G ++P T + + +E + L+ L DDV VY++
Sbjct: 196 DRGEVAMVPKTKTSLSGDDLEKMENLMDTLENNDDVQDVYSN 237
>gi|114327761|ref|YP_744918.1| hypothetical protein GbCGDNIH1_1097 [Granulibacter bethesdensis
CGDNIH1]
gi|122327273|sp|Q0BT57.1|Y1097_GRABC RecName: Full=Probable transcriptional regulatory protein
GbCGDNIH1_1097
gi|114315935|gb|ABI61995.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1]
Length = 249
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 14/215 (6%)
Query: 19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGG 77
+ + G P+P SN L A + A+E+++PKD V+R IK+A+ GQ + + E YE YG G
Sbjct: 35 SARSGLPDPASNPRLRAAISWAREVNMPKDTVDRAIKKATGAGQGDDYAEVRYEGYGPAG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++VE LTD R+ A VR GG + + SV F F R V+ + D +L+
Sbjct: 95 VAVIVEALTDNRNRTAADVRSAFSKYGGALGETNSVSFMFSRVGVIRFPASAGSADDMLE 154
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
A++AGA++V E AE + S D + G P +
Sbjct: 155 AAIEAGADNV-----------ESTAETHEITTSVEDFFAVRDVLESRFGAPEAAK--LDW 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT+ +D + +L+ L + DDV AVY +
Sbjct: 202 RPGTTVTLDQDKASSVLKLLDVLEDNDDVQAVYAN 236
>gi|424064100|ref|ZP_17801585.1| UPF0082 protein [Acinetobacter baumannii Ab44444]
gi|404673481|gb|EKB41267.1| UPF0082 protein [Acinetobacter baumannii Ab44444]
Length = 232
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 26/226 (11%)
Query: 16 YLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA-SEKGQEAFIEKVY 70
Y+R + K GG +P SN L AV+EKA +++ +D + R I+R + + E Y
Sbjct: 11 YIREIVTAAKLGGADPASNPRLRAVVEKALSVNMTRDTINRAIQRGVGGEDNDDLKEVTY 70
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E YG GGV+++VE +TD + R+V VR G + GSV + F + I F D
Sbjct: 71 EGYGVGGVAVLVETMTDNLNRTVPDVRHCFSKTNGNLGTAGSVAYLFTKRG--EITFDDV 128
Query: 131 D-KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPF 189
+D+++D+AL+AGAED+ V+ED+ V+++ + + ++ L AG+
Sbjct: 129 SLEDKIMDVALEAGAEDI---EVSEDE---------ILVITSPETFGEVQDALAAAGL-- 174
Query: 190 ETDNGSELL-PITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
++DN ++ P T E+ D+A ++ K LI L +LDDV VYT+
Sbjct: 175 KSDNAEVVMSPSTKAEITDIDQAKQVMK-LIDMLEDLDDVQNVYTN 219
>gi|387889101|ref|YP_006319399.1| hypothetical protein EBL_c17940 [Escherichia blattae DSM 4481]
gi|414595171|ref|ZP_11444800.1| putative transcriptional regulatory protein YebC [Escherichia
blattae NBRC 105725]
gi|386923934|gb|AFJ46888.1| hypothetical protein EBL_c17940 [Escherichia blattae DSM 4481]
gi|403193846|dbj|GAB82452.1| putative transcriptional regulatory protein YebC [Escherichia
blattae NBRC 105725]
Length = 238
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 12/212 (5%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K+G P+P SN+ L V+E+AK+ VPK ++++ I +A G E F++ YE +G G I
Sbjct: 35 KQGEPDPESNSTLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPSGSMI 94
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+ E LT + R++A VR + GG + G+V + F V+ K TD D+ + +I L
Sbjct: 95 IAETLTSNVNRTIANVRTIFNKKGGNIGAAGAVSYMFDNTGVIVFKGTDPDR--IFEILL 152
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DA DV D T+ED Y ++D + I L+ AGI T EL+
Sbjct: 153 DAEV-DV------RDVTEEDGNIIIY--TESTDLHKGIDA-LKAAGITEFTTTELELIAQ 202
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ +E+ E +E+ + L+ L + DDV VY +
Sbjct: 203 SEVELSPEDLEIFEGLVDALEDDDDVQRVYHN 234
>gi|325000599|ref|ZP_08121711.1| hypothetical protein PseP1_17607 [Pseudonocardia sp. P1]
Length = 249
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG +P +N L ++KAK+ VP D ++R +KR S + G + YE YG GV
Sbjct: 37 RTGGGDPDANPTLYDAIQKAKKSSVPNDNIDRAVKRGSGADAGGADYQAITYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG MADP SV + F R VV + D +D +L
Sbjct: 97 AVLIECLTDNKNRAATEVRTAMTRNGGTMADPNSVAYLFTRRGVVVLPKGDLSEDDVLMA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V D D ++V+S + + + T L+E GI +++ + E
Sbjct: 157 VLDAGAEEV------SDLGDS------WEVLSEATDVVAVRTALQENGIDYDSAD-QEFR 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+EVD + LI L + DDV V+++
Sbjct: 204 ASMNVEVDVDGARKIIRLIEALEDSDDVQNVWSN 237
>gi|302550162|ref|ZP_07302504.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
gi|302467780|gb|EFL30873.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
Length = 250
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ IKR E G + +YE YG GV
Sbjct: 37 RMGGVDLEGNPTLYDAVQKAKKQSVPNKNIDSAIKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYMFSRKGVVIVPKGELTEDDVLTA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V D E ++V+S + + + T L++AGI +++ + S +
Sbjct: 157 VLDAGAEEV-----------NDLGES-FEVISEATDLVAVRTALQDAGIDYDSAD-SSFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E + +LI L + DDV V+ +
Sbjct: 204 PSVQVELDEEGAKKIFKLIDALEDSDDVQNVFAN 237
>gi|298293010|ref|YP_003694949.1| hypothetical protein Snov_3055 [Starkeya novella DSM 506]
gi|296929521|gb|ADH90330.1| protein of unknown function DUF28 [Starkeya novella DSM 506]
Length = 248
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 13/214 (6%)
Query: 19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGV 78
+ K G P+P N L A + A+ ++PKD ++R IK+A E + E YE YG GGV
Sbjct: 35 SAKLGMPDPNMNPRLRAAILAARAENMPKDNIDRAIKKAQGGDAENYDEIRYEGYGPGGV 94
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE LTD R+ + VR GG +A+ G+V F F R VV A +D +++
Sbjct: 95 AVIVEALTDNRNRTASEVRSYFTKSGGSLAETGAVSFMFDRIGVVEFDAAKASEDAMMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A++AGA+DV +E ++VV + +N ++ L EA +G
Sbjct: 155 AIEAGADDV------------SSSEDGHEVVCSVENLHEVARAL-EAKFGEPRKSGLVWR 201
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E L+ L + DDV VY +
Sbjct: 202 PQNTVAVDDEVAEKLIRLVDTLNDNDDVQNVYAN 235
>gi|294673560|ref|YP_003574176.1| YebC/PmpR family DNA-binding regulatory protein [Prevotella
ruminicola 23]
gi|294474272|gb|ADE83661.1| DNA-binding regulatory protein, YebC/PmpR family [Prevotella
ruminicola 23]
Length = 245
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 116/242 (47%), Gaps = 24/242 (9%)
Query: 3 RKQSCIRGWGR--KSYLR-------NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK + ++ WG K++ + VK GGP P +N L A++ AK ++PKD +ER
Sbjct: 8 RKATKLKRWGHMAKTFTKIGKQIAIAVKAGGPEPENNPALRAIIANAKRENMPKDNIERA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK A K Q + E YE YG G++I VE LTD TR+V VR V G + GS+
Sbjct: 68 IKNAMGKDQSDYKEVTYEGYGPHGIAIFVETLTDNTTRTVGDVRSVFNKFNGNLGTQGSL 127
Query: 114 MFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
F F V K D D D+++ +D G ED + E+ + +
Sbjct: 128 SFLFDHKSVFTFKKKDGLDMDEMILDLIDYGVEDEYDEDEEENSI---------TIYADP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+++ + L E G FE G+E +P +V E E +++ KL + DDV VY
Sbjct: 179 SSFSAVQKHLEENG--FEV-TGAEFTRIPNDLKDVTAEQRETIDKMVEKLEDFDDVQTVY 235
Query: 231 TD 232
T+
Sbjct: 236 TN 237
>gi|384158241|ref|YP_005540314.1| hypothetical protein BAMTA208_03190 [Bacillus amyloliquefaciens
TA208]
gi|384163122|ref|YP_005544501.1| hypothetical protein LL3_00726 [Bacillus amyloliquefaciens LL3]
gi|384167285|ref|YP_005548663.1| hypothetical protein BAXH7_00670 [Bacillus amyloliquefaciens XH7]
gi|328552329|gb|AEB22821.1| hypothetical protein BAMTA208_03190 [Bacillus amyloliquefaciens
TA208]
gi|328910677|gb|AEB62273.1| hypothetical protein LL3_00726 [Bacillus amyloliquefaciens LL3]
gi|341826564|gb|AEK87815.1| hypothetical protein BAXH7_00670 [Bacillus amyloliquefaciens XH7]
Length = 239
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G P+P SN L VLE+AK VPK+I+ER I++A +E F E Y
Sbjct: 26 FGREIYVA-AKQGEPDPESNQALKVVLERAKTYSVPKNIIERAIEKAKGGAEENFDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+V+ LT+ + R+ VR GG M GSV + F V+ ++ A
Sbjct: 85 EGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVEGKTA 144
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D+ L + D D++E EDD+ V + D + + + AG+
Sbjct: 145 DEALELLMEADVDVRDILE----EDDS--------VIVYAEPDQFHAVQEAFKNAGVEEF 192
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +L IE+ ++A ++LI L +L+DV VY +
Sbjct: 193 TVAELTMLAQNEIELPEDAKAQFEKLIDVLEDLEDVQQVYHN 234
>gi|357057957|ref|ZP_09118814.1| hypothetical protein HMPREF9334_00531 [Selenomonas infelix ATCC
43532]
gi|355374534|gb|EHG21828.1| hypothetical protein HMPREF9334_00531 [Selenomonas infelix ATCC
43532]
Length = 648
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 25/220 (11%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI RA +KG A + E YE YG
Sbjct: 442 VRMGGGDPTGNMRLKLALSKAKANNIPKD----NINRAIQKGLGATEGSNYEELFYEGYG 497
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKD 133
GG ++++++LTD R+ A VR + GG + G V + F++ V + + + D+D
Sbjct: 498 PGGTAVMLDILTDNRNRTAADVRHLFSKYGGNLGQDGCVSWMFKKKAVFIVERESFDDED 557
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
LL+I L+AGAED+ +EDD +++ + + + I L E GI ET +
Sbjct: 558 ALLEIVLEAGAEDM----RSEDDV--------FEITAEPEAFEAIEAVLGEKGI--ETAS 603
Query: 194 GS-ELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT+ + D+ E + LI L + DDV VY++
Sbjct: 604 AEVTMVPDTTVHLADKDAEKMQTLIDALEDNDDVQNVYSN 643
>gi|291545834|emb|CBL18942.1| conserved hypothetical protein TIGR01033 [Ruminococcus sp. SR1/5]
Length = 247
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 110/201 (54%), Gaps = 22/201 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK GGP+P +N+ L V+ KAK ++P D ++R IK+A+ +++ + VYE YG GV
Sbjct: 36 VKAGGPDPANNSKLRDVIAKAKANNMPNDTIDRGIKKAAGADSADSYEKAVYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-------KFTDAD 131
+I+VE LTD R+ VR G + G V F F + + I + + D
Sbjct: 96 AIIVETLTDNKNRTAGNVRNAFTKGNGSIGTQGCVSFMFDQKGQIIIDKEELEDECGEMD 155
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
D+L+ ALDAGAED E E+D+ +++++ D+++ + L +AGIP
Sbjct: 156 ADELMMTALDAGAEDFNE----EEDS--------FEIITAPDDFSAVREALEKAGIPL-V 202
Query: 192 DNGSELLPITTIEV-DDEAME 211
+ ++P T +E+ DD+A++
Sbjct: 203 EAQIAMIPQTYVELTDDQAIK 223
>gi|258405868|ref|YP_003198610.1| hypothetical protein Dret_1748 [Desulfohalobium retbaense DSM 5692]
gi|257798095|gb|ACV69032.1| protein of unknown function DUF28 [Desulfohalobium retbaense DSM
5692]
Length = 249
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 116/220 (52%), Gaps = 14/220 (6%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEV 72
K + K GG + N+ L A +E AK +++PKD +E IK+ + E G E+ E +YE
Sbjct: 30 KEIMLAAKLGGGDLDGNSRLRAAVESAKSVNLPKDKIETAIKKGTGEIGAESIEEIMYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
Y GGV++++E TD R+VA +R ++ GG + + G V + F R ++ D+
Sbjct: 90 YAPGGVAMLIEAATDNKNRTVAEIRHILSKGGGSLGESGCVAWMFDRRGILRFPKESYDE 149
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
+QLL++ L+AGA+DV +DD D ++V + + +++ AG+ + T+
Sbjct: 150 EQLLEVGLEAGADDV------KDDGD------TWEVRTEPEALSEVQEAYTSAGLEY-TE 196
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T+ VD E ++ L + DDV VY +
Sbjct: 197 ADVTMVPQNTVPVDKETGAKVLKVYEALDDHDDVQRVYAN 236
>gi|110635521|ref|YP_675729.1| hypothetical protein Meso_3192 [Chelativorans sp. BNC1]
gi|118574342|sp|Q11DG1.1|Y3192_MESSB RecName: Full=Probable transcriptional regulatory protein Meso_3192
gi|110286505|gb|ABG64564.1| protein of unknown function DUF28 [Chelativorans sp. BNC1]
Length = 249
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L ++ A+ +PKD +ER IK+A E + E YE Y GGV+
Sbjct: 36 AKAGLPDPAMNPRLRLAVQNARAQSMPKDNIERAIKKAQGNDAETYEEIRYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + + D D++++ A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKAGGALGETGSVSFMFDRVGEIVYPASAGDADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV +DE+ + ++ ++ ++T+ L EA E+ + P
Sbjct: 156 IEAGAEDV--------QSDENG----HVIICAFEDIGEVTSALEEALGEAESVK-TVWRP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ VD+E + +LIA L + DDV VY +
Sbjct: 203 QTSTPVDEERAQSILKLIAVLEDDDDVQNVYAN 235
>gi|270290945|ref|ZP_06197168.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304385212|ref|ZP_07367557.1| glucose-1-phosphate adenylyltransferase [Pediococcus acidilactici
DSM 20284]
gi|418069495|ref|ZP_12706772.1| hypothetical protein KIW_06365 [Pediococcus acidilactici MA18/5M]
gi|270280341|gb|EFA26176.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304328419|gb|EFL95640.1| glucose-1-phosphate adenylyltransferase [Pediococcus acidilactici
DSM 20284]
gi|357536026|gb|EHJ20057.1| hypothetical protein KIW_06365 [Pediococcus acidilactici MA18/5M]
Length = 245
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P++N L +++KA+ ++PKD ++R I + S G + E YE YG G +
Sbjct: 36 VKAGGPDPSANPQLRLMMDKARAANMPKDNIKRAIDKGSGTGGANYEEITYEGYGPAGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK--FTDADKDQLLD 137
I+V LTD R+ AAVR GG + GSV + F R + IK D D+DQ+++
Sbjct: 96 IIVSALTDNKNRTAAAVRSAFTHHGGSLGATGSVSYMFDRKGYIVIKREGLDKDEDQMME 155
Query: 138 IALDAGAEDV 147
A++AGA+DV
Sbjct: 156 DAIEAGADDV 165
>gi|225077141|ref|ZP_03720340.1| hypothetical protein NEIFLAOT_02196 [Neisseria flavescens
NRL30031/H210]
gi|224951489|gb|EEG32698.1| hypothetical protein NEIFLAOT_02196 [Neisseria flavescens
NRL30031/H210]
Length = 242
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 30/224 (13%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGG 77
+ GG +P +N L LEKA E ++PKD V+R I + + +G E +IE YE YG GG
Sbjct: 36 ARMGGGDPGANPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVE-YIELRYEGYGIGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+++V+ LTD TR+VA VR GG + G V F F + + D+D L++
Sbjct: 95 AALMVDCLTDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFE-PGVDEDALME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAG-------IPFE 190
AL+AGAEDVI N+D + E VV+ +++ + + L AG +
Sbjct: 154 AALEAGAEDVI---TNDDGSIE--------VVTAPNDWAGVKSALEAAGYKSVDGDVTMR 202
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
T N +EL ++A+++ K LI L +LDDV VYT +
Sbjct: 203 TQNETEL-------SGEDAVKMQK-LIDALEDLDDVQDVYTSAV 238
>gi|393780246|ref|ZP_10368464.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 412 str. F0487]
gi|392608718|gb|EIW91556.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 412 str. F0487]
Length = 239
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 13/211 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGP+P SN+ L AV++ AK ++PK+ +ER IK+ASEK + E ++E Y G++
Sbjct: 34 VKEGGPHPESNSRLRAVIQNAKAANMPKENIERAIKKASEKDTANYKEVLFEGYAPHGIA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+++E TD R+VA +R C G + GSV F F I D ++L
Sbjct: 94 VLIETATDNNNRTVANIRSYFNKCNGTLGTSGSVEFMFDHTCNFRINGNGIDPEELELEM 153
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+D GAE+V V+ED + + +++ I +L I +G E +P
Sbjct: 154 IDFGAEEVF---VDEDGI---------LIYAPFESFGAIQKELESRNIEI-LSSGFERIP 200
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
T E+ E ++L+ K+ E +DV VY
Sbjct: 201 QVTKELTPEEQADVEKLLEKIEEDEDVQQVY 231
>gi|332799124|ref|YP_004460623.1| hypothetical protein TepRe1_1170 [Tepidanaerobacter acetatoxydans
Re1]
gi|332696859|gb|AEE91316.1| UPF0082 protein yeeN [Tepidanaerobacter acetatoxydans Re1]
Length = 245
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 119/215 (55%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
++GGP+P +N+ L ++EKAK+ ++P D +ER IKR S E G + E +YE YG GGV
Sbjct: 36 AREGGPDPNTNSRLKDIIEKAKQANMPNDNIERAIKRGSGELGGADYEEIMYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKDQLLD 137
+I+++ TD R+ +R + GG + + G V + F + ++ I K D D +Q++
Sbjct: 96 AILIDATTDNRNRTAGEMRHLFDKHGGNLGETGCVAWMFEKKGLILIEKKDDTDVEQIMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+A+D+GAEDV E ED E + ++ + + + L++ I + S
Sbjct: 156 LAIDSGAEDVEEL--------EDSIE----ITTSVEKFETVKNYLQDNNIDIFSAELS-F 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P TT+ + + E ++L+ L E DDV VYT+
Sbjct: 203 IPNTTVTLHESESEKLEKLLEILEEHDDVQNVYTN 237
>gi|257458165|ref|ZP_05623319.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
gi|257444459|gb|EEV19548.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
Length = 247
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 114/216 (52%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
+ GG +P N L + KA+ ++PKD +ER IK+ + E G ++ E +YE Y GGV
Sbjct: 36 ARMGGGDPNGNPRLRTAILKARAANMPKDNIERAIKKGTGELGGASYEELLYEGYAPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VEVLTD R+ A VR + GG + GSV + F R V+ +++L++
Sbjct: 96 AVLVEVLTDNKNRAAANVRNLFSKNGGNLGATGSVSYMFNRKGVIEYDAEVVSEEKLMEE 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN-YTDITTKLREAGIPFETDNGS-E 196
AL+AGAED+ + E ++T N + + L+E G FE+ +
Sbjct: 156 ALEAGAEDI-------------QTEGGIITITTDPNDFASVLEALQEKG--FESVSAEVS 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P T + ++ E + +++ +L E DDV VYT+
Sbjct: 201 MVPATYMSLEAETIRKVLKMVERLEEDDDVQNVYTN 236
>gi|398884122|ref|ZP_10639064.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM60]
gi|398195320|gb|EJM82368.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM60]
Length = 248
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-QEAFIEKVYEVYGYGGV 78
++GG +P SN L L+KA ++ +DI++R + R + + +E YE YG GGV
Sbjct: 36 ARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAVARGAGAADTDDMVELTYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE +TD R+ AAVR CGG + GSV + F R ++ D+D L++
Sbjct: 96 AVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYLFERKGQISFA-PGVDEDALMEA 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL 197
A++A A+DV+ NED + V ++ + + L AG F+ D+ +
Sbjct: 155 AMEADADDVV---TNEDGS--------IDVFTSFAGFYSVRNALEAAG--FKGDDAEIVM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
LP T+ E+D E E +LI L +LDDV +VY++
Sbjct: 202 LPTTSAELDLEGAEKVLKLIDMLEDLDDVQSVYSN 236
>gi|295110106|emb|CBL24059.1| conserved hypothetical protein TIGR01033 [Ruminococcus obeum
A2-162]
Length = 247
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
VK GGP+P +N+ L V+ KAK ++P D ++R IK+A+ +++ YE YG GV
Sbjct: 36 VKAGGPDPNNNSKLRDVIAKAKANNMPNDTIDRGIKKAAGADSADSYEHATYEGYGPNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-------KFTDAD 131
+I+VE LTD R+ + VR G + G V F F + + I + D D
Sbjct: 96 AIIVETLTDNKNRTASNVRNAFTKGYGSIGTQGCVSFMFDQKGQIIIDKEELEDECGDMD 155
Query: 132 KDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFET 191
D+L+ ALDAGAED E E+D+ +++++ D+++ + L +AGIP
Sbjct: 156 ADELMMTALDAGAEDFNE----EEDS--------FEILTAPDDFSAVREALEKAGIPM-V 202
Query: 192 DNGSELLPITTIEVDDE 208
+ ++P T +E+ DE
Sbjct: 203 EAQVAMVPQTYVELTDE 219
>gi|149201067|ref|ZP_01878042.1| hypothetical protein RTM1035_15617 [Roseovarius sp. TM1035]
gi|149145400|gb|EDM33426.1| hypothetical protein RTM1035_15617 [Roseovarius sp. TM1035]
Length = 246
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L +++AK +PKD +ER IK+A E + E YE YG GV+
Sbjct: 36 AKMGDPDPDKNPRLRLAIKEAKAQSMPKDNIERAIKKAMGGDAEDYEEIRYEGYGPNGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE +TD R+ + VR GG + + GSV F F R V + D D ++ A
Sbjct: 96 IIVEAMTDNRNRTASNVRSTFTKNGGNLGETGSVAFMFERKGEVTYAASVGDADTVMMAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
L+AGAEDV + E + + + +++ + L E + T P
Sbjct: 156 LEAGAEDV------------ESGEDGHTIWCADTDLSEVASGL-EGALGESTSTKLVWKP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TT E+D E+M+ +LI L + DDV V T+
Sbjct: 203 TTTTEMDLESMQKLMKLIEALEDDDDVQRVTTN 235
>gi|395215723|ref|ZP_10401015.1| hypothetical protein O71_10749 [Pontibacter sp. BAB1700]
gi|394455767|gb|EJF10196.1| hypothetical protein O71_10749 [Pontibacter sp. BAB1700]
Length = 235
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+ GPNP +N+ L + AK +++PKD VE IKRAS K ++ + E VYE YG G++
Sbjct: 34 VKEAGPNPETNSRLRTAINNAKGVNMPKDRVEAAIKRASSKEEKDYEEVVYEGYGPHGIA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+VE TD + R++A +R GG + GS+ F F R + I D ++L
Sbjct: 94 ILVETATDNLNRTIANMRVYFSRAGGAVGKTGSLDFIFTRKGIFKIAAEGLDIEELELEL 153
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL-- 197
+DAGAED+ E E V + ++ + L E G+ + +EL
Sbjct: 154 IDAGAEDIYEH------------EGEIIVETAFTDFGAMQKALEEKGLNVIS---AELQR 198
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T +E+ DE E + L+ K+ E DDV AVY +
Sbjct: 199 VPNTRMELTDEQAEEIENLVEKIEEDDDVQAVYHN 233
>gi|154483677|ref|ZP_02026125.1| hypothetical protein EUBVEN_01381 [Eubacterium ventriosum ATCC
27560]
gi|149735587|gb|EDM51473.1| DNA-binding regulatory protein, YebC/PmpR family [Eubacterium
ventriosum ATCC 27560]
Length = 242
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 17/217 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P +N+ L V+ KAK ++P D +ER IK+A+ E V YE YG G+
Sbjct: 36 VKEGGADPNNNSKLRDVIAKAKANNMPNDTIERGIKKAAGNASAINYETVRYEGYGPNGI 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF--RRARVVNIKFTDADKDQLL 136
+I+V+ LTD R+ A VR GG + G V + F + +++ + D D D+L+
Sbjct: 96 AIIVDALTDNRNRTAANVRNCFTKGGGNVGTQGCVAYMFDEKGQIIIDKEECDMDPDELM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
A+DAGAED +D+ D Y+V++ + ++ + L AG+ +
Sbjct: 156 MTAIDAGAEDF------QDEEDS------YEVITDPNEFSVVREALEAAGVAMAQAEVT- 202
Query: 197 LLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
++P +E+ DDEA++ +I +L E +DV VY +
Sbjct: 203 MIPQNYVELTDDEAIKKMNIIIDRLDEDEDVQQVYHN 239
>gi|390448461|ref|ZP_10234081.1| hypothetical protein A33O_02289 [Nitratireductor aquibiodomus RA22]
gi|389666202|gb|EIM77657.1| hypothetical protein A33O_02289 [Nitratireductor aquibiodomus RA22]
Length = 249
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 19/238 (7%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q +R R + K G P+P N L ++ AK +PKD +ER I
Sbjct: 11 MHRKGRQDAVRSKMFSKLAREITVAAKMGLPDPAMNPRLRLAIQNAKAQSMPKDNIERAI 70
Query: 55 KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
K+A+ E + E YE YG GGV+++VE LTD RS + +R GG + + GSV
Sbjct: 71 KKAAGGDAENYDEVRYEGYGPGGVAVIVEALTDNRNRSASNIRAAFTKAGGSLGETGSVA 130
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F F R + D D +++ A++AGAEDV +DE+ + + ++
Sbjct: 131 FMFDRVGEIIYPTDKGDADTVMEAAIEAGAEDV--------QSDENG----HVITCAFED 178
Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
D+T L EA + + P T VD+E + +L+A L + DDV VY +
Sbjct: 179 IGDVTAAL-EASLGEAESVKAIWRPQTGTPVDEERAQSILKLVATLEDDDDVQNVYAN 235
>gi|153875113|ref|ZP_02003050.1| protein containing DUF28 [Beggiatoa sp. PS]
gi|152068422|gb|EDN66949.1| protein containing DUF28 [Beggiatoa sp. PS]
Length = 248
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 120/216 (55%), Gaps = 16/216 (7%)
Query: 19 NVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGG 77
+ + GG SN L A ++ A ++ KD +ER IKR A + E + E YE YG GG
Sbjct: 35 SARMGGGEAASNPRLRAAIDNALVSNMTKDTIERAIKRGAGTQDAENYEEITYEGYGPGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++V+ +TD R+VA +R GG + GSV + F + +++ + +D+D +++
Sbjct: 95 VAVMVDCMTDNRNRTVAEIRHAFSKHGGNLGTDGSVAYLFEKVGLLSFP-SGSDEDHIME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSE 196
IAL+AGA+DV+ N+DD+ V++ S+++ + + +A + P + +
Sbjct: 154 IALEAGAQDVVH---NDDDS--------IDVLTLSEDFYQVKDAMEKAKLMPTQAEITMR 202
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
TT+++D+ + +N L +L +LDDV VY++
Sbjct: 203 ASTNTTLDLDNASKMVN--LFNRLEDLDDVQTVYSN 236
>gi|384098244|ref|ZP_09999362.1| hypothetical protein W5A_06311 [Imtechella halotolerans K1]
gi|383835936|gb|EID75353.1| hypothetical protein W5A_06311 [Imtechella halotolerans K1]
Length = 239
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 15/232 (6%)
Query: 1 MQRKQSCIRGWGR--KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS 58
M+R + + + R K + VK+GGPNP +N+ L AV++ AK ++PKD VER IK+A+
Sbjct: 13 MKRWSAMAKTFTRIGKDIVMAVKEGGPNPETNSRLRAVMQNAKAANMPKDNVERAIKKAT 72
Query: 59 EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR 118
+K + E ++E Y G++I++E +D R+VA +R C G + GSV F F
Sbjct: 73 DKDTANYKEALFEGYAAHGIAILIETASDNNNRTVANIRSYFNKCNGTLGTSGSVEFMFD 132
Query: 119 RARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDI 178
I D ++L +D GAE+V DED Y + +++ I
Sbjct: 133 HTCNFRIASEGIDPEELELEMIDFGAEEVF--------ADEDGIMIY----APFESFGAI 180
Query: 179 TTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
+L I +G + +P T E+ + + ++L+ K+ E DDV VY
Sbjct: 181 QKELENRNIEI-LSSGFDRIPQVTKELTADQVADVEKLLEKIEEDDDVQNVY 231
>gi|333983198|ref|YP_004512408.1| hypothetical protein [Methylomonas methanica MC09]
gi|333807239|gb|AEF99908.1| UPF0082 protein yeeN [Methylomonas methanica MC09]
Length = 251
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 16/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVSIV 81
GG +P++N L ++KA ++ +D ++ IK+A E+V YE YG GG +++
Sbjct: 40 GGGDPSNNPSLRTAIDKALGANMKRDTIDNTIKKAIGALDGVNYEEVRYEGYGPGGTAVM 99
Query: 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALD 141
V LTD R+VA VR GG + GSV + FR+ +++ + D+D +++ AL+
Sbjct: 100 VNCLTDNRNRTVADVRHAFSKHGGNLGTDGSVAYLFRKVGILSFN-NEVDEDAVMETALE 158
Query: 142 AGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI- 200
AGAED+ V DD D V +T + Y ++ L AG FE +N +
Sbjct: 159 AGAEDI----VTNDDGSVD-------VFTTPEEYMNVKEALVAAG--FEPENAEVTMHAD 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T E+D EA E +LI +L +LDDV VY++
Sbjct: 206 TKTELDAEAAEKMMKLIDRLEDLDDVQDVYSN 237
>gi|39934172|ref|NP_946448.1| hypothetical protein RPA1097 [Rhodopseudomonas palustris CGA009]
gi|192289697|ref|YP_001990302.1| hypothetical protein Rpal_1287 [Rhodopseudomonas palustris TIE-1]
gi|49036511|sp|P62040.1|Y1097_RHOPA RecName: Full=Probable transcriptional regulatory protein RPA1097
gi|226695901|sp|B3QHR9.1|Y1287_RHOPT RecName: Full=Probable transcriptional regulatory protein Rpal_1287
gi|39648020|emb|CAE26540.1| DUF28 [Rhodopseudomonas palustris CGA009]
gi|192283446|gb|ACE99826.1| protein of unknown function DUF28 [Rhodopseudomonas palustris
TIE-1]
Length = 248
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 27/220 (12%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L A + A+ ++PKD +ER IK+A E + E YE YG GGV+
Sbjct: 36 AKLGTPDPAMNPRLRAAVLAARAENMPKDNIERAIKKAIGGDSENYDEIRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + +R GG + + GSV F F R ++ A D +LD A
Sbjct: 96 VIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRTGIIEYDADKASADDMLDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-------REAGIPFETD 192
++AGA+DV+ +E +++ ++ + + D+ L R+A + ++
Sbjct: 156 IEAGADDVVS------------SEAGHEIYASQETFRDVAKALEAKFGEARKAAVIWK-- 201
Query: 193 NGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ VDDE E +L+ L + DDV VY +
Sbjct: 202 ------PQNTVAVDDETGEKLFKLMDALNDHDDVQNVYAN 235
>gi|288927513|ref|ZP_06421360.1| glucose-1-phosphate adenylyltransferase [Prevotella sp. oral taxon
317 str. F0108]
gi|288330347|gb|EFC68931.1| glucose-1-phosphate adenylyltransferase [Prevotella sp. oral taxon
317 str. F0108]
Length = 239
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 114/242 (47%), Gaps = 24/242 (9%)
Query: 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERN 53
RK + ++ WG K VK GGP P +N L A++ AK ++PKD +ER
Sbjct: 8 RKAAKLKRWGHMARTFTKIGKQIAIAVKAGGPEPENNPTLRAIIANAKRENMPKDNIERA 67
Query: 54 IKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV 113
IK A K Q + YE YG GV+I V+ LTD TR+V VR + G + GS+
Sbjct: 68 IKNAMGKDQSEYKVVTYEGYGPHGVAIFVDTLTDNTTRTVGDVRSIFNKFNGNLGTSGSL 127
Query: 114 MFKFRRARVVNIKFTDA-DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTS 172
F F V K D + D+L+ +D G V + +++T E +
Sbjct: 128 SFLFDHKSVFTFKKKDGLEMDELILDLIDYG---VEDEYDEDEETGE------ITIYGAP 178
Query: 173 DNYTDITTKLREAGIPFETDNGSEL--LPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
++ +I L E G FE G+E +P EV DE E +++ +L E DDV VY
Sbjct: 179 TSFGEIQKHLEEEG--FEV-TGAEFTYIPNDLKEVTDEERETIDKMVERLEEFDDVQTVY 235
Query: 231 TD 232
T+
Sbjct: 236 TN 237
>gi|310658626|ref|YP_003936347.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|308825404|emb|CBH21442.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 237
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GG +P N L +EKAK ++P D +ER IK+ G E++ YE YG GGV
Sbjct: 33 AKMGGGDPEYNANLKNAIEKAKSENMPNDNIERAIKKGIGSGDGESYEHITYEGYGPGGV 92
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFTDADKDQLLD 137
++++E LTD R+ +R + GG + G V F F R+ +++ K D +D L++
Sbjct: 93 AVIIETLTDNKNRTAGNMRYYLDKNGGNLGTAGCVSFMFDRKGQIIIEKSDDISEDTLME 152
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAED + T+ED + V++ +++ + L G F T + E+
Sbjct: 153 QALEAGAEDFV--------TEED----CFVVLTDIESFLQVKDALSSHGYSFVTAD-IEM 199
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T + D+ + +++ L E DDV VY +
Sbjct: 200 IPQTYTAISDDQKKSMDKMMDMLEEDDDVQNVYHN 234
>gi|59801645|ref|YP_208357.1| hypothetical protein NGO1291 [Neisseria gonorrhoeae FA 1090]
gi|240014539|ref|ZP_04721452.1| hypothetical protein NgonD_07819 [Neisseria gonorrhoeae DGI18]
gi|240121061|ref|ZP_04734023.1| hypothetical protein NgonPI_04689 [Neisseria gonorrhoeae PID24-1]
gi|254494085|ref|ZP_05107256.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268597527|ref|ZP_06131694.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268604057|ref|ZP_06138224.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682516|ref|ZP_06149378.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268686958|ref|ZP_06153820.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291043418|ref|ZP_06569139.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|293398720|ref|ZP_06642896.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
gi|67462013|sp|Q5F792.1|Y1291_NEIG1 RecName: Full=Probable transcriptional regulatory protein NGO1291
gi|59718540|gb|AAW89945.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|226513125|gb|EEH62470.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268551315|gb|EEZ46334.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268588188|gb|EEZ52864.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622800|gb|EEZ55200.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268627242|gb|EEZ59642.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291012654|gb|EFE04639.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291610860|gb|EFF39959.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
Length = 242
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 30/224 (13%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGG 77
+ GG +P +N L LEKA E ++PKD V+R I + + +G E +IE YE YG GG
Sbjct: 36 ARMGGGDPGANPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVE-YIELRYEGYGIGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+++V+ LTD TR+VA VR GG + G V F F + + D+D+L++
Sbjct: 95 AALMVDCLTDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFE-PGVDEDELME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAG-------IPFE 190
AL+AGAEDV+ N+D + E V++ +++ + + L AG +
Sbjct: 154 AALEAGAEDVV---TNDDGSIE--------VITAPNDWAGVKSALEAAGYKSVDGDVTMR 202
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
N +EL D+A+++ K LI L +LDDV VYT +
Sbjct: 203 AQNETEL-------SGDDAVKMQK-LIDALEDLDDVQDVYTSAV 238
>gi|363899489|ref|ZP_09325998.1| hypothetical protein HMPREF9625_00658 [Oribacterium sp. ACB1]
gi|395208523|ref|ZP_10397764.1| DNA-binding regulatory protein, YebC/PmpR family [Oribacterium sp.
ACB8]
gi|361958529|gb|EHL11828.1| hypothetical protein HMPREF9625_00658 [Oribacterium sp. ACB1]
gi|394706104|gb|EJF13628.1| DNA-binding regulatory protein, YebC/PmpR family [Oribacterium sp.
ACB8]
Length = 246
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 20/220 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GG +P SN+ L V+ KAK ++P D ++ IK+A+ E++ YE YG GV
Sbjct: 36 VKQGGADPNSNSKLRDVIAKAKANNMPNDTIQNGIKKAAGALDSVNYEELQYEGYGVNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKFT----DADKD 133
+I+V+VLTD RS A VR G + GSV F F + +++ K D D D
Sbjct: 96 AIIVKVLTDNKNRSAADVRSAFTKGKGSLGAQGSVSFLFEEKGQIILDKEVMDDLDKDFD 155
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
L+DIA+ AGAED+I+ DD+ Y++++ +++ + L + IP
Sbjct: 156 SLMDIAIMAGAEDLID----RDDS--------YEILTVPADFSSVRENLEKENIPM-VQA 202
Query: 194 GSELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVYTD 232
L+P T+ V D+EA++ ++ + L E DDV VYT+
Sbjct: 203 EVVLIPGNTVSVTDEEAVKNLRKTLDLLDESDDVQNVYTN 242
>gi|118581084|ref|YP_902334.1| hypothetical protein Ppro_2673 [Pelobacter propionicus DSM 2379]
gi|166228423|sp|A1ASF6.1|Y2673_PELPD RecName: Full=Probable transcriptional regulatory protein Ppro_2673
gi|118503794|gb|ABL00277.1| protein of unknown function DUF28 [Pelobacter propionicus DSM 2379]
Length = 247
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA--FIEKVYEVYGYGG 77
K GG +P +N L ++KAK ++PKD +ER IK+ + G E + E VYE YG GG
Sbjct: 36 AKLGGGDPAANPRLRTAVDKAKAENMPKDNIERAIKKGA-GGMEGVTYEEIVYEGYGPGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+++VEV+TD RSV+ +R + G M + G V + F + ++ D +QL +
Sbjct: 95 AAVLVEVMTDNRNRSVSEIRSIFTKANGNMGEAGCVAWMFSKKGLITFD-KGLDFEQLFE 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
A++AGAEDV E ED+ ++V + ++ ++ L G F + +
Sbjct: 154 AAIEAGAEDVSE----EDEQ--------FEVTTDPSSFIEVREALVAKGFSFANAEVT-M 200
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T + ++ + E +L+ KL + DDV VY++
Sbjct: 201 IPQTMVALEGKQAESMLKLMDKLEDNDDVQNVYSN 235
>gi|395785079|ref|ZP_10464813.1| UPF0082 protein [Bartonella tamiae Th239]
gi|395425591|gb|EJF91752.1| UPF0082 protein [Bartonella tamiae Th239]
Length = 248
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 13/213 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GV+
Sbjct: 36 AKQGAPDPAMNPRLRLAVQNAKSQSMPKDNIERAIKKASGGDAENYDEVRYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + K D D +++ A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKSGGALGETGSVGFMFNRVGEIIYKVDAGDNDTVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV +DE+ + ++ ++ +++ L A E+ + P
Sbjct: 156 IEAGAEDV--------QSDEEG----HVIICAFEDIGEVSKALETALGEAESIK-TVWKP 202
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T VD+E + LI+ L + DDV VY +
Sbjct: 203 TTGAAVDEEKAQSVLRLISTLEDDDDVQNVYAN 235
>gi|348589915|ref|YP_004874377.1| hypothetical protein TASI_0579 [Taylorella asinigenitalis MCE3]
gi|347973819|gb|AEP36354.1| hypothetical protein TASI_0579 [Taylorella asinigenitalis MCE3]
gi|399117154|emb|CCG19968.1| conserved hypothetical protein [Taylorella asinigenitalis 14/45]
Length = 243
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 112/217 (51%), Gaps = 16/217 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GGP+P +N L +KA ++PKD + R I+R + EK+ YE YG G
Sbjct: 36 ARAGGPDPDANPSLRLAWDKATAANMPKDNIMRAIQRGAGGADGENYEKIRYEGYGPAGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++VE +TD TR+V+ VR GG + GSV F F+ + +D+ Q++DI
Sbjct: 96 AVIVECMTDNRTRTVSDVRHAFTKHGGNLGQDGSVAFMFKHCGQF-LFAPGSDESQIMDI 154
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGA+DVI TDE E +V +Y + +AG+ E D +
Sbjct: 155 GLEAGADDVI--------TDE---EGLIEVTCEPSDYMAVKKAFLDAGLTPEVD-AIIMK 202
Query: 199 PIT-TIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
P+ T+ D+A+++ K ++ +L LDDV V+T +
Sbjct: 203 PLNETVLEGDDAVKMQK-ILDQLESLDDVQEVHTTAV 238
>gi|335356400|ref|ZP_08548270.1| hypothetical protein LaniK3_00100 [Lactobacillus animalis KCTC
3501]
Length = 243
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 113/215 (52%), Gaps = 18/215 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P +N L V+EKA+ ++PKD ++R + +A+ + E YE YG GV+
Sbjct: 36 AKSGGPDPDANPQLRLVMEKARAANMPKDNIKRALDKATGANGANYEEITYEGYGPAGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLLD 137
I+V LTD R+ +AVR GG + + GSV F F R + I + D D+DQ+ +
Sbjct: 96 ILVHALTDNRNRTASAVRTDFNRNGGNLGETGSVSFMFDRKGYIAIVREDLDVDEDQMFE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
++AGAED+ ++ +++ + + D+ L+ ++ D+
Sbjct: 156 DVIEAGAEDL------------QTSDEVFEIYTEPKIFEDVRDALQ---AKYDLDSAEIT 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T+ V ++ +E + LI +L + DDV V+T
Sbjct: 201 MVPQNTVPVPEDKVEQLQRLIDRLEDEDDVSEVFT 235
>gi|289548577|ref|YP_003473565.1| hypothetical protein Thal_0805 [Thermocrinis albus DSM 14484]
gi|289182194|gb|ADC89438.1| protein of unknown function DUF28 [Thermocrinis albus DSM 14484]
Length = 249
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 113/216 (52%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQEAFIEKVYEVYGYGGV 78
V++GGPNP +N L + +E AK ++P + +ER IK+ S E G E + E +YE YG GGV
Sbjct: 36 VREGGPNPETNPRLRSAIENAKRFNMPWETIERAIKKGSGELGGENYEEVLYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++ TD R+ A +R V+ GG + G V F F R ++ + +D+L +
Sbjct: 96 ALMILTTTDNRNRTTAEIRHVLSKHGGNLGTSGCVSFMFDRVGIIEVPRESISEDELYEK 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A++AGAED+ E +Y V + ++ + L +A + + +
Sbjct: 156 AIEAGAEDI------------QTGEAFYTVYTRPEDLYAVKESLEKASVQIQRAEVT-YR 202
Query: 199 PITTIEVDDE--AMELNKELIAKLLELDDVDAVYTD 232
P TT+ ++D A +L K L+ L ELDDV V +
Sbjct: 203 PNTTVPIEDAETAQKLFK-LLEALEELDDVKEVIAN 237
>gi|15609740|ref|NP_217119.1| Highly conserved protein [Mycobacterium tuberculosis H37Rv]
gi|15842143|ref|NP_337180.1| hypothetical protein MT2678 [Mycobacterium tuberculosis CDC1551]
gi|31793788|ref|NP_856281.1| hypothetical protein Mb2635c [Mycobacterium bovis AF2122/97]
gi|121638490|ref|YP_978714.1| hypothetical protein BCG_2628c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662443|ref|YP_001283966.1| hypothetical protein MRA_2631 [Mycobacterium tuberculosis H37Ra]
gi|148823797|ref|YP_001288551.1| hypothetical protein TBFG_12622 [Mycobacterium tuberculosis F11]
gi|167967078|ref|ZP_02549355.1| hypothetical protein MtubH3_03105 [Mycobacterium tuberculosis
H37Ra]
gi|224990984|ref|YP_002645671.1| hypothetical protein JTY_2622 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798314|ref|YP_003031315.1| hypothetical protein TBMG_01368 [Mycobacterium tuberculosis KZN
1435]
gi|254232722|ref|ZP_04926049.1| highly conserved hypothetical protein [Mycobacterium tuberculosis
C]
gi|254365273|ref|ZP_04981318.1| highly conserved hypothetical protein [Mycobacterium tuberculosis
str. Haarlem]
gi|254551655|ref|ZP_05142102.1| hypothetical protein Mtube_14554 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289444143|ref|ZP_06433887.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289448254|ref|ZP_06437998.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289575314|ref|ZP_06455541.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289746397|ref|ZP_06505775.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289751228|ref|ZP_06510606.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754723|ref|ZP_06514101.1| hypothetical protein TBGG_01811 [Mycobacterium tuberculosis EAS054]
gi|289758734|ref|ZP_06518112.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289762777|ref|ZP_06522155.1| hypothetical protein TBIG_01960 [Mycobacterium tuberculosis GM
1503]
gi|294994287|ref|ZP_06799978.1| hypothetical protein Mtub2_07173 [Mycobacterium tuberculosis 210]
gi|297635214|ref|ZP_06952994.1| hypothetical protein MtubK4_13880 [Mycobacterium tuberculosis KZN
4207]
gi|297732207|ref|ZP_06961325.1| hypothetical protein MtubKR_14014 [Mycobacterium tuberculosis KZN
R506]
gi|298526079|ref|ZP_07013488.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776878|ref|ZP_07415215.1| hypothetical protein TMAG_02411 [Mycobacterium tuberculosis
SUMu001]
gi|306780642|ref|ZP_07418979.1| hypothetical protein TMBG_01144 [Mycobacterium tuberculosis
SUMu002]
gi|306785406|ref|ZP_07423728.1| hypothetical protein TMCG_01850 [Mycobacterium tuberculosis
SUMu003]
gi|306790006|ref|ZP_07428328.1| hypothetical protein TMDG_00319 [Mycobacterium tuberculosis
SUMu004]
gi|306794087|ref|ZP_07432389.1| hypothetical protein TMEG_03281 [Mycobacterium tuberculosis
SUMu005]
gi|306798501|ref|ZP_07436803.1| hypothetical protein TMFG_03849 [Mycobacterium tuberculosis
SUMu006]
gi|306804364|ref|ZP_07441032.1| hypothetical protein TMHG_01799 [Mycobacterium tuberculosis
SUMu008]
gi|306807596|ref|ZP_07444264.1| hypothetical protein TMGG_02268 [Mycobacterium tuberculosis
SUMu007]
gi|306969798|ref|ZP_07482459.1| hypothetical protein TMIG_03292 [Mycobacterium tuberculosis
SUMu009]
gi|306972993|ref|ZP_07485654.1| hypothetical protein TMJG_01585 [Mycobacterium tuberculosis
SUMu010]
gi|307080703|ref|ZP_07489873.1| hypothetical protein TMKG_03035 [Mycobacterium tuberculosis
SUMu011]
gi|307085292|ref|ZP_07494405.1| hypothetical protein TMLG_02334 [Mycobacterium tuberculosis
SUMu012]
gi|313659542|ref|ZP_07816422.1| hypothetical protein MtubKV_14029 [Mycobacterium tuberculosis KZN
V2475]
gi|339632632|ref|YP_004724274.1| hypothetical protein MAF_26210 [Mycobacterium africanum GM041182]
gi|340627621|ref|YP_004746073.1| hypothetical protein MCAN_26461 [Mycobacterium canettii CIPT
140010059]
gi|375295579|ref|YP_005099846.1| hypothetical protein TBSG_01378 [Mycobacterium tuberculosis KZN
4207]
gi|378772345|ref|YP_005172078.1| hypothetical protein BCGMEX_2621c [Mycobacterium bovis BCG str.
Mexico]
gi|383308369|ref|YP_005361180.1| hypothetical protein MRGA327_16030 [Mycobacterium tuberculosis
RGTB327]
gi|385991906|ref|YP_005910204.1| hypothetical protein [Mycobacterium tuberculosis CCDC5180]
gi|385995526|ref|YP_005913824.1| hypothetical protein [Mycobacterium tuberculosis CCDC5079]
gi|385999384|ref|YP_005917683.1| hypothetical protein MTCTRI2_2652 [Mycobacterium tuberculosis
CTRI-2]
gi|392387240|ref|YP_005308869.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392431787|ref|YP_006472831.1| hypothetical protein TBXG_001357 [Mycobacterium tuberculosis KZN
605]
gi|397674510|ref|YP_006516045.1| hypothetical protein RVBD_2603c [Mycobacterium tuberculosis H37Rv]
gi|422813656|ref|ZP_16862028.1| hypothetical protein TMMG_02615 [Mycobacterium tuberculosis
CDC1551A]
gi|424804941|ref|ZP_18230372.1| hypothetical protein TBPG_02113 [Mycobacterium tuberculosis W-148]
gi|424948268|ref|ZP_18363964.1| hypothetical protein NCGM2209_2911 [Mycobacterium tuberculosis
NCGM2209]
gi|433627737|ref|YP_007261366.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|433631722|ref|YP_007265350.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
gi|433635684|ref|YP_007269311.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
gi|433642804|ref|YP_007288563.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
gi|449064683|ref|YP_007431766.1| hypothetical protein K60_027080 [Mycobacterium bovis BCG str. Korea
1168P]
gi|54040589|sp|P67178.1|Y2635_MYCBO RecName: Full=Probable transcriptional regulatory protein Mb2635c
gi|54042958|sp|P67177.1|Y2603_MYCTU RecName: Full=Probable transcriptional regulatory protein
Rv2603c/MT2678
gi|166228413|sp|A1KLV3.1|Y2628_MYCBP RecName: Full=Probable transcriptional regulatory protein BCG_2628c
gi|166228415|sp|A5U5V4.1|Y2631_MYCTA RecName: Full=Probable transcriptional regulatory protein MRA_2631
gi|254765054|sp|C1AF74.1|Y2622_MYCBT RecName: Full=Probable transcriptional regulatory protein JTY_2622
gi|13882428|gb|AAK46994.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31619382|emb|CAD94820.1| HIGHLY CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121494138|emb|CAL72616.1| Highly conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601781|gb|EAY60791.1| highly conserved hypothetical protein [Mycobacterium tuberculosis
C]
gi|134150786|gb|EBA42831.1| highly conserved hypothetical protein [Mycobacterium tuberculosis
str. Haarlem]
gi|148506595|gb|ABQ74404.1| hypothetical protein MRA_2631 [Mycobacterium tuberculosis H37Ra]
gi|148722324|gb|ABR06949.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224774097|dbj|BAH26903.1| hypothetical protein JTY_2622 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319817|gb|ACT24420.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289417062|gb|EFD14302.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289421212|gb|EFD18413.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289539745|gb|EFD44323.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289686925|gb|EFD54413.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289691815|gb|EFD59244.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289695310|gb|EFD62739.1| hypothetical protein TBGG_01811 [Mycobacterium tuberculosis EAS054]
gi|289710283|gb|EFD74299.1| hypothetical protein TBIG_01960 [Mycobacterium tuberculosis GM
1503]
gi|289714298|gb|EFD78310.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|298495873|gb|EFI31167.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308214733|gb|EFO74132.1| hypothetical protein TMAG_02411 [Mycobacterium tuberculosis
SUMu001]
gi|308326473|gb|EFP15324.1| hypothetical protein TMBG_01144 [Mycobacterium tuberculosis
SUMu002]
gi|308329925|gb|EFP18776.1| hypothetical protein TMCG_01850 [Mycobacterium tuberculosis
SUMu003]
gi|308333540|gb|EFP22391.1| hypothetical protein TMDG_00319 [Mycobacterium tuberculosis
SUMu004]
gi|308337567|gb|EFP26418.1| hypothetical protein TMEG_03281 [Mycobacterium tuberculosis
SUMu005]
gi|308341234|gb|EFP30085.1| hypothetical protein TMFG_03849 [Mycobacterium tuberculosis
SUMu006]
gi|308345992|gb|EFP34843.1| hypothetical protein TMGG_02268 [Mycobacterium tuberculosis
SUMu007]
gi|308349041|gb|EFP37892.1| hypothetical protein TMHG_01799 [Mycobacterium tuberculosis
SUMu008]
gi|308352715|gb|EFP41566.1| hypothetical protein TMIG_03292 [Mycobacterium tuberculosis
SUMu009]
gi|308357609|gb|EFP46460.1| hypothetical protein TMJG_01585 [Mycobacterium tuberculosis
SUMu010]
gi|308361551|gb|EFP50402.1| hypothetical protein TMKG_03035 [Mycobacterium tuberculosis
SUMu011]
gi|308365161|gb|EFP54012.1| hypothetical protein TMLG_02334 [Mycobacterium tuberculosis
SUMu012]
gi|323718800|gb|EGB27957.1| hypothetical protein TMMG_02615 [Mycobacterium tuberculosis
CDC1551A]
gi|326904217|gb|EGE51150.1| hypothetical protein TBPG_02113 [Mycobacterium tuberculosis W-148]
gi|328458084|gb|AEB03507.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|339295480|gb|AEJ47591.1| hypothetical protein CCDC5079_2401 [Mycobacterium tuberculosis
CCDC5079]
gi|339299099|gb|AEJ51209.1| hypothetical protein CCDC5180_2372 [Mycobacterium tuberculosis
CCDC5180]
gi|339331988|emb|CCC27691.1| HIGHLY conserved hypothetical protein [Mycobacterium africanum
GM041182]
gi|340005811|emb|CCC44977.1| HIGHLY conserved hypothetical protein [Mycobacterium canettii CIPT
140010059]
gi|341602528|emb|CCC65204.1| Highly conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220431|gb|AEN01062.1| hypothetical protein MTCTRI2_2652 [Mycobacterium tuberculosis
CTRI-2]
gi|356594666|gb|AET19895.1| Hypothetical protein BCGMEX_2621c [Mycobacterium bovis BCG str.
Mexico]
gi|358232783|dbj|GAA46275.1| hypothetical protein NCGM2209_2911 [Mycobacterium tuberculosis
NCGM2209]
gi|378545791|emb|CCE38069.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|379028914|dbj|BAL66647.1| hypothetical protein ERDMAN_2863 [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|380722322|gb|AFE17431.1| hypothetical protein MRGA327_16030 [Mycobacterium tuberculosis
RGTB327]
gi|392053196|gb|AFM48754.1| hypothetical protein TBXG_001357 [Mycobacterium tuberculosis KZN
605]
gi|395139415|gb|AFN50574.1| hypothetical protein RVBD_2603c [Mycobacterium tuberculosis H37Rv]
gi|432155343|emb|CCK52593.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|432159352|emb|CCK56656.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
gi|432163315|emb|CCK60723.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
gi|432167277|emb|CCK64788.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
gi|440582081|emb|CCG12484.1| hypothetical protein MT7199_2636 [Mycobacterium tuberculosis
7199-99]
gi|444896139|emb|CCP45400.1| Highly conserved protein [Mycobacterium tuberculosis H37Rv]
gi|449033191|gb|AGE68618.1| hypothetical protein K60_027080 [Mycobacterium bovis BCG str. Korea
1168P]
Length = 251
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GG +P N L ++KAK+ VP + +ER KR + E G + +YE Y GV++
Sbjct: 39 GGGDPAGNPTLYDAIQKAKKSSVPNENIERARKRGAGEEAGGADWQTIMYEGYAPNGVAV 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
++E LTD R+ + VR + GG MADPGSV + F R VV ++ +D +L L
Sbjct: 99 LIECLTDNRNRAASEVRVAMTRNGGTMADPGSVSYLFSRKGVVTLEKNGLTEDDVLAAVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+AGAEDV D D ++V+S + + L++AGI +E+ S P
Sbjct: 159 EAGAEDV------NDLGDS------FEVISEPAELVAVRSALQDAGIDYESAEAS-FQPS 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ VD + +L+ L + DDV V+T+
Sbjct: 206 VSVPVDLDGARKVFKLVDALEDSDDVQNVWTN 237
>gi|403385870|ref|ZP_10927927.1| hypothetical protein KJC30_14280 [Kurthia sp. JC30]
Length = 237
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K G P+P SN L VLE+AK VPK I++R I +A E F E Y
Sbjct: 26 FGREIYVA-AKSGEPDPESNGALKIVLERAKTYSVPKHIIDRAIDKAKGNVDEVFDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G ++V+ LT+ + R+ + VR GG M GSV + F + V I+ DA
Sbjct: 85 EGFGPNGSMVIVDALTNNVNRTASDVRAAFGKNGGNMGVKGSVDYMFTKTAVFGIEGKDA 144
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D+ I D DV NE DT V + ++ + T L+ GI
Sbjct: 145 DELLETFIMADIDVRDVF----NEGDT--------AIVYAEPTDFARVQTALKAEGIEEF 192
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+LP + +++DDE+ +++I L EL+DV +Y +
Sbjct: 193 AVAEISMLPQSEVQLDDESKAQFEKMIEALDELEDVQQIYHN 234
>gi|119952831|ref|YP_945040.1| hypothetical protein BT0025 [Borrelia turicatae 91E135]
gi|254799456|sp|A1QYH8.1|Y025_BORT9 RecName: Full=Probable transcriptional regulatory protein BT0025
gi|119861602|gb|AAX17370.1| hypothetical cytosolic protein [Borrelia turicatae 91E135]
Length = 244
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 20/213 (9%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS---EKGQEAFIEKVYEVYGYGG 77
K GG + SN+ L + KA+ ++PKD +E+ IK+ S G E F E YE Y G
Sbjct: 37 KMGGGDIESNSRLRLAVNKARVSNMPKDNIEKAIKKGSGDDNIGSEYF-ELTYEAYAPHG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++++ LTD R+ + VR V+ GG + PGSV + F + +++ +D++++
Sbjct: 96 VALIIKCLTDNKNRTASEVRSVLSKSGGSLGAPGSVSYMFHKKGLISYSLDKYPEDEIIE 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
+AL+AGAED+ +V+++++N+ I++ LR FE D
Sbjct: 156 LALEAGAEDIYSEGSQ------------IEVITSAENFEAISSFLR---TKFEEDIAEIA 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAV 229
L+P + ++ E M+ LI KL + DDV V
Sbjct: 201 LIPGNKLSLNKEQMDKVLALIEKLEDFDDVQEV 233
>gi|255262233|ref|ZP_05341575.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255104568|gb|EET47242.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 246
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P +N L +++AK VPKD+++R IK++ + + E YE YG GV+
Sbjct: 36 AKMGDPDPDNNPRLRMAVKEAKSQSVPKDVIDRAIKKSQAGEGDNYDEIRYEGYGPSGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE +TD R+ + VR GG + + GSV F F R V+ D D ++ A
Sbjct: 96 VIVEAMTDNRNRTASTVRSTFTKNGGNLGETGSVGFMFERKGTVSYPAAVGDDDTVMMAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKL-REAGIPFETDNGSELL 198
++AGAEDV + E + V + D++T L +E G E+D+ +
Sbjct: 156 IEAGAEDV------------ESGEDGHVVWCADTDLNDVSTALEQELG---ESDSTKLVW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT E+D E M+ +L+ L + DD+ V T+
Sbjct: 201 RPTTTTELDLEGMQKLMKLVDALEDDDDIQTVTTN 235
>gi|453053361|gb|EMF00827.1| hypothetical protein H340_09465 [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ IKR + E G + +YE YG GV
Sbjct: 37 RMGGADLDGNPTLYDAVQKAKKQSVPNKNIDSAIKRGAGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAAGDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLGA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E+ ++V+S + + + T L+EAGI +++ + +
Sbjct: 157 VLDAGAEEV-------NDLGEN-----FEVLSEATDLVAVRTALQEAGIDYDSAE-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +++D+E +LI L + DDV V+ +
Sbjct: 204 PTMQVQLDEEGARKIFKLIDALEDSDDVQNVFAN 237
>gi|16799465|ref|NP_469733.1| hypothetical protein lin0388 [Listeria innocua Clip11262]
gi|47096700|ref|ZP_00234286.1| conserved hypothetical protein TIGR01033 [Listeria monocytogenes
str. 1/2a F6854]
gi|217965541|ref|YP_002351219.1| hypothetical protein LMHCC_2267 [Listeria monocytogenes HCC23]
gi|226222996|ref|YP_002757103.1| hypothetical protein Lm4b_00388 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254825825|ref|ZP_05230826.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254913615|ref|ZP_05263627.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254938054|ref|ZP_05269751.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|254992305|ref|ZP_05274495.1| hypothetical protein LmonocytoFSL_03924 [Listeria monocytogenes FSL
J2-064]
gi|255520965|ref|ZP_05388202.1| hypothetical protein LmonocFSL_07041 [Listeria monocytogenes FSL
J1-175]
gi|290892477|ref|ZP_06555471.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|386007095|ref|YP_005925373.1| hypothetical protein lmo4a_0382 [Listeria monocytogenes L99]
gi|386025683|ref|YP_005946459.1| hypothetical protein LMM7_0395 [Listeria monocytogenes M7]
gi|386046030|ref|YP_005964362.1| hypothetical protein [Listeria monocytogenes J0161]
gi|386731129|ref|YP_006204625.1| hypothetical protein MUO_02020 [Listeria monocytogenes 07PF0776]
gi|404406834|ref|YP_006689549.1| hypothetical protein LMOSLCC2376_0351 [Listeria monocytogenes
SLCC2376]
gi|405754462|ref|YP_006677926.1| hypothetical protein LMOSLCC2540_0383 [Listeria monocytogenes
SLCC2540]
gi|406703144|ref|YP_006753498.1| hypothetical protein LMOL312_0369 [Listeria monocytogenes L312]
gi|422414817|ref|ZP_16491774.1| hypothetical protein NT06LI_0478 [Listeria innocua FSL J1-023]
gi|422808476|ref|ZP_16856887.1| hypothetical protein LMIV_0132 [Listeria monocytogenes FSL J1-208]
gi|423099432|ref|ZP_17087139.1| DNA-binding regulatory protein, YebC/PmpR family [Listeria innocua
ATCC 33091]
gi|33517084|sp|Q92ES0.1|Y388_LISIN RecName: Full=Probable transcriptional regulatory protein lin0388
gi|16412817|emb|CAC95621.1| lin0388 [Listeria innocua Clip11262]
gi|47014954|gb|EAL05901.1| conserved hypothetical protein TIGR01033 [Listeria monocytogenes
str. 1/2a F6854]
gi|217334811|gb|ACK40605.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|225875458|emb|CAS04155.1| Unknown [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258610667|gb|EEW23275.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|290558043|gb|EFD91563.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|293591627|gb|EFF99961.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293595064|gb|EFG02825.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|307569905|emb|CAR83084.1| conserved hypothetical protein [Listeria monocytogenes L99]
gi|313625184|gb|EFR95035.1| hypothetical protein NT06LI_0478 [Listeria innocua FSL J1-023]
gi|336022264|gb|AEH91401.1| hypothetical protein LMM7_0395 [Listeria monocytogenes M7]
gi|345533021|gb|AEO02462.1| hypothetical protein LMOG_02712 [Listeria monocytogenes J0161]
gi|370794056|gb|EHN61846.1| DNA-binding regulatory protein, YebC/PmpR family [Listeria innocua
ATCC 33091]
gi|378753510|gb|EHY64094.1| hypothetical protein LMIV_0132 [Listeria monocytogenes FSL J1-208]
gi|384389887|gb|AFH78957.1| hypothetical protein MUO_02020 [Listeria monocytogenes 07PF0776]
gi|404223662|emb|CBY75024.1| hypothetical protein LMOSLCC2540_0383 [Listeria monocytogenes
SLCC2540]
gi|404240983|emb|CBY62383.1| hypothetical protein LMOSLCC2376_0351 [Listeria monocytogenes
SLCC2376]
gi|406360174|emb|CBY66447.1| hypothetical protein LMOL312_0369 [Listeria monocytogenes L312]
Length = 239
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 12/212 (5%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K G P+P SN L V+E+AK +VPK I++R I++A G E + E YE +G G I
Sbjct: 35 KSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMI 94
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+V+ LT+ + R+ + VR GG M GSV + F + ++ DA D+LL++ +
Sbjct: 95 IVDALTNNVNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDA--DELLELLM 152
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+A DV D DED Y + +++ + L+ AGI T E++P
Sbjct: 153 EADI-DV------RDILDEDGQAIIY---AEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQ 202
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
I++ E +E ++LI L +L+DV VY +
Sbjct: 203 NDIQLSGEDLEKFEKLIDALEDLEDVQKVYHN 234
>gi|321314412|ref|YP_004206699.1| hypothetical protein BSn5_15320 [Bacillus subtilis BSn5]
gi|384174359|ref|YP_005555744.1| hypothetical protein I33_0774 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|386757355|ref|YP_006230571.1| hypothetical protein MY9_0776 [Bacillus sp. JS]
gi|418034225|ref|ZP_12672701.1| hypothetical protein BSSC8_36450 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428278170|ref|YP_005559905.1| hypothetical protein BSNT_01165 [Bacillus subtilis subsp. natto
BEST195]
gi|430757220|ref|YP_007210598.1| hypothetical protein A7A1_1728 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|291483127|dbj|BAI84202.1| hypothetical protein BSNT_01165 [Bacillus subtilis subsp. natto
BEST195]
gi|320020686|gb|ADV95672.1| hypothetical protein BSn5_15320 [Bacillus subtilis BSn5]
gi|349593583|gb|AEP89770.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|351469169|gb|EHA29365.1| hypothetical protein BSSC8_36450 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|384930637|gb|AFI27315.1| hypothetical protein MY9_0776 [Bacillus sp. JS]
gi|430021740|gb|AGA22346.1| Hypothetical protein YeeI [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 239
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G P+P SN L VLE+AK VPK+I+ER I++A +E + E Y
Sbjct: 26 FGREIYVA-AKQGEPDPESNQALKVVLERAKTYSVPKNIIERAIEKAKGGAEENYDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+V+ LT+ + R+ VR GG M GSV + F V+ ++ A
Sbjct: 85 EGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVEGKTA 144
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D+ + + D D++E EDD+ V + D + + + AG+
Sbjct: 145 DEALEILMEADVDVRDILE----EDDS--------VIVYAEPDQFHAVQEAFKNAGVEEF 192
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +L + + + D+A E ++LI L +L+DV VY +
Sbjct: 193 TVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLEDVQQVYHN 234
>gi|294101864|ref|YP_003553722.1| hypothetical protein [Aminobacterium colombiense DSM 12261]
gi|293616844|gb|ADE56998.1| protein of unknown function DUF28 [Aminobacterium colombiense DSM
12261]
Length = 249
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 109/215 (50%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K+GG +P+ N L +++AK VP D + R IKR + + A E++ YE YG GV
Sbjct: 36 AKEGGGDPSMNVRLKTAIDRAKAASVPNDNITRAIKRGTGEIDGASYEEITYEGYGSNGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ A VR ++ GG + + G V + F R V+ +K + D++ ++
Sbjct: 96 ALMIEALTDNRNRTAADVRALLARGGGSLGESGCVAWMFERKGVIEVKGENIDEETIMLA 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
L+AGAED E E Y V ++ +D+ L AG + SE++
Sbjct: 156 CLEAGAEDFEE------------IEGGYTVYTSPAALSDVQAALEAAGYEVASAE-SEMV 202
Query: 199 PITTIEVDD-EAMELNKELIAKLLELDDVDAVYTD 232
P T+ VD E + L+ L + DDV VY +
Sbjct: 203 PNNTVAVDTVEHAQKILRLLENLEDHDDVQNVYAN 237
>gi|255994537|ref|ZP_05427672.1| glucose-1-phosphate adenylyltransferase [Eubacterium saphenum ATCC
49989]
gi|255993250|gb|EEU03339.1| glucose-1-phosphate adenylyltransferase [Eubacterium saphenum ATCC
49989]
Length = 233
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 20/231 (8%)
Query: 4 KQSCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS-EKGQ 62
K+S + ++ + KKGG +P N L ++KAK +++P D +ER IK+ + E
Sbjct: 17 KRSQVFTRHARTIMVAAKKGG-DPEYNFSLKHAIDKAKAINMPNDNIERAIKKGTGEIDG 75
Query: 63 EAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARV 122
+ F E +E Y GGV+++V+VLTD R+ +A++ GG + PG V + F R V
Sbjct: 76 DHFEEGRFEGYAPGGVAVIVDVLTDNKNRTTSAIKHAFDKNGGNLGAPGCVSYMFERKGV 135
Query: 123 VNIKFT-DADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTK 181
+ ++ T D +++++D+A++AGAE+ IE NE V+ S+++ +
Sbjct: 136 ITVEATDDMGEEEIMDVAVEAGAEN-IESEGNE-----------ISVIMNSEDFAAVKEA 183
Query: 182 LREAGIP-FETDNGSELLP-ITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
++++G E D E LP I DDE L K LI L E DDV VY
Sbjct: 184 IQKSGANIIEAD--IEYLPNIYATPTDDEKKALEK-LIDTLEENDDVQKVY 231
>gi|288817493|ref|YP_003431840.1| hypothetical protein HTH_0172 [Hydrogenobacter thermophilus TK-6]
gi|384128263|ref|YP_005510876.1| hypothetical protein [Hydrogenobacter thermophilus TK-6]
gi|288786892|dbj|BAI68639.1| hypothetical protein HTH_0172 [Hydrogenobacter thermophilus TK-6]
gi|308751100|gb|ADO44583.1| protein of unknown function DUF28 [Hydrogenobacter thermophilus
TK-6]
Length = 249
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 103/199 (51%), Gaps = 16/199 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKR-ASEKGQEAFIEKVYEVYGYGGV 78
V++GGPNP +N+ L +E A+ +++P + +ER IK+ A E G E++ E +YE YG GG
Sbjct: 36 VREGGPNPETNSRLRTAIENARRVNMPAETIERAIKKGAGELGGESYEEVLYEGYGPGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I+V TD R+ A +R V GG + G V + F R + + +D L +
Sbjct: 96 AIMVMATTDNRNRTTAEIRHVFSKHGGNLGSSGCVSYMFERVGYMEVPKEGLSEDVLYEK 155
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A++AGAED+ + E Y + + + + + L + IP E +
Sbjct: 156 AIEAGAEDI------------ETGETSYIIYTKPEMFYTVKDSLLKENIPVENATIT-YK 202
Query: 199 PITTIEVDDEAMELNKELI 217
P++T+++ D E K+LI
Sbjct: 203 PLSTVQITDP--ETAKKLI 219
>gi|395780701|ref|ZP_10461158.1| UPF0082 protein [Bartonella washoensis 085-0475]
gi|423711704|ref|ZP_17686009.1| UPF0082 protein [Bartonella washoensis Sb944nv]
gi|395413371|gb|EJF79841.1| UPF0082 protein [Bartonella washoensis Sb944nv]
gi|395418101|gb|EJF84432.1| UPF0082 protein [Bartonella washoensis 085-0475]
Length = 248
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 108/214 (50%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+P N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKQGAPDPAMNPRLRLAVQNAKAQSMPKDNIERAIKKASGNDVEHYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + K D ++D A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKSGGALGETGSVSFMFNRIGEIIYKREAGTADSIMDAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
++AGAEDV E + + ++ ++ +K+ EA + E ++ +
Sbjct: 156 IEAGAEDV------------QSEETGHHITCAFEDIGEV-SKMLEAKLG-EAESIKTIWK 201
Query: 200 ITTIEVDDEAMELN-KELIAKLLELDDVDAVYTD 232
TT+ DE L+ +LI+ L E DDV VY +
Sbjct: 202 ATTLAPVDEEKALSVLKLISTLEEDDDVQNVYAN 235
>gi|56963721|ref|YP_175452.1| hypothetical protein ABC1956 [Bacillus clausii KSM-K16]
gi|60390871|sp|Q5WGL4.1|Y1956_BACSK RecName: Full=Probable transcriptional regulatory protein ABC1956
gi|56909964|dbj|BAD64491.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 238
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 17/224 (7%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ ++G P+P N L AVLE+AK +VPK I++R I++A E++ E+ Y
Sbjct: 26 FGREIYVA-ARQGEPDPELNQALKAVLERAKTYNVPKSIIDRAIEKAKGGSDESYEERRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G ++V+ LT+ + R+ + VR GG M GSV + F R V I F
Sbjct: 85 EGFGPNGAMVIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDRVAV--IGFEGK 142
Query: 131 DKDQLLDIALDA--GAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP 188
D+ L+I +DA A+D+IE EDDT V + D + + R AGI
Sbjct: 143 TADEALEILMDADVDAKDIIE----EDDT--------VIVYAEPDQFHAVQEAFRNAGIE 190
Query: 189 FETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ ++ + + ++ +++I + +L+DV VY +
Sbjct: 191 EFSVAEFSMIAHNEVTLSEDVQAQFEKMIDAIEDLEDVQQVYHN 234
>gi|210623590|ref|ZP_03293916.1| hypothetical protein CLOHIR_01866 [Clostridium hiranonis DSM 13275]
gi|210153460|gb|EEA84466.1| hypothetical protein CLOHIR_01866 [Clostridium hiranonis DSM 13275]
Length = 240
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 15/208 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGGV 78
K GG +P N L +EKAK ++P D ++R I + + G E++ VYE YG GGV
Sbjct: 33 AKDGGGDPEYNAALKTAIEKAKADNMPNDNIDRAIAKGTGAGNSESYETIVYEGYGPGGV 92
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+++V LTD R+ +R GG + G V F F R + + D +++L+D
Sbjct: 93 AVIVNALTDNKNRTAGNIRYYFDKNGGNLGTSGCVSFMFDRKGQILVAAEDGVSEEELMD 152
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
AL+AGAED I V ED ++V++ +++ + L+EAG F + + ++
Sbjct: 153 AALEAGAEDFI---VEEDG---------FEVITEPNDFAAVRDALKEAGYEFISAD-VKM 199
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDD 225
+P TT E+ ++ E + +LE DD
Sbjct: 200 IPQTTTELTEDGQRNAMEKLIDMLEDDD 227
>gi|325290234|ref|YP_004266415.1| hypothetical protein Sgly_2123 [Syntrophobotulus glycolicus DSM
8271]
gi|324965635|gb|ADY56414.1| UPF0082 protein yeeN [Syntrophobotulus glycolicus DSM 8271]
Length = 251
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 19/218 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ G P+P +N L ++ AK ++P + ++R +++ S G + E++ YE YG GGV
Sbjct: 36 ARAGSPDPNNNFRLKIAIDNAKAANLPNENIQRAVQKGSGTGDDTNYEELRYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI--KFTDADKDQLL 136
+I+ +LTD RS + +R + GG M D G V + F ++I + ++D LL
Sbjct: 96 AIMATILTDNRNRSASEMRHIFSKNGGNMGDSGCVGWMFAEKGQLSIAKEGLALNEDDLL 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
AL+AGAED+ ED Y+V + +N + L + GI +T N S
Sbjct: 156 LFALEAGAEDI---------ETEDEG---YEVFTAPENMEQVRQSLIDGGIQIQTANVS- 202
Query: 197 LLPITTIEVD--DEAMELNKELIAKLLELDDVDAVYTD 232
L+P +E+ D+A ++ K LI L E DDV VYT+
Sbjct: 203 LIPENRMEISDLDQAKKIIK-LIDTLEEHDDVQNVYTN 239
>gi|160880639|ref|YP_001559607.1| hypothetical protein Cphy_2507 [Clostridium phytofermentans ISDg]
gi|189039704|sp|A9KMB4.1|Y2507_CLOPH RecName: Full=Probable transcriptional regulatory protein Cphy_2507
gi|160429305|gb|ABX42868.1| protein of unknown function DUF28 [Clostridium phytofermentans
ISDg]
Length = 242
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 16/192 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
VK+GGP+P +N L ++ KAK ++P D ++R+IK+A+ +G E V YE YG G
Sbjct: 36 VKEGGPDPNNNNKLKDIVAKAKANNMPNDTIDRSIKKAAGEGNAVNYEFVTYEGYGPSGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSV--MFKFRRARVVNIKFTDADKDQLL 136
+I+VE LTD R+ A VR G + G V MF + +++ + D D L+
Sbjct: 96 AIIVEALTDNKNRTAANVRNAFTKGNGSVGTQGCVSYMFDQKGQIIIDKEECDMASDDLM 155
Query: 137 DIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSE 196
+ALDAGA D E EDD+ ++V++ D+++ + L +AG+P +
Sbjct: 156 MLALDAGASDFNE----EDDS--------FEVLTEPDDFSVVRETLEKAGVPMMQAEVT- 202
Query: 197 LLPITTIEVDDE 208
++P T +E+ DE
Sbjct: 203 MIPQTWVELSDE 214
>gi|152974298|ref|YP_001373815.1| hypothetical protein Bcer98_0465 [Bacillus cytotoxicus NVH 391-98]
gi|189040206|sp|A7GL12.1|Y465_BACCN RecName: Full=Probable transcriptional regulatory protein
Bcer98_0465
gi|152023050|gb|ABS20820.1| protein of unknown function DUF28 [Bacillus cytotoxicus NVH 391-98]
Length = 239
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 17/224 (7%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G P+P SN L VLE+AK VPK I++R I++A +E + E Y
Sbjct: 26 FGREIYVA-AKQGEPDPESNQALKVVLERAKTYSVPKSIIDRAIEKAKGGSEENYDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+V+ LT+ + R+ A VR GG M GSV + F V+ ++ A
Sbjct: 85 EGFGPNGSMIIVDTLTNNVNRTAADVRAAFNKNGGNMGVNGSVAYMFDATAVIGLEGKTA 144
Query: 131 DKDQLLDIALDA--GAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIP 188
D++L+I ++A A D++E E+D+ + + D + + L+ AG
Sbjct: 145 --DEVLEILMEADVDARDILE----EEDS--------VIIYAEPDQFHAVQEALKAAGTT 190
Query: 189 FETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +L +E+ +EA ++LI L +LDDV VY +
Sbjct: 191 EFTVAELTMLAQNDVELSEEAQAQFEKLIDALEDLDDVQQVYHN 234
>gi|347534550|ref|YP_004841220.1| hypothetical protein LSA_08870 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504606|gb|AEN99288.1| UPF0082 protein [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 246
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 112/214 (52%), Gaps = 17/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG +P N L LEKA+ ++PKD V+R + +AS G F E YE YG GG +
Sbjct: 36 AKSGGVDPDGNPQLRLELEKARAANMPKDNVQRALDKASGVGAANFEEVTYEGYGPGGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIK-FTDADKDQLLD 137
++V LTD R+ AAVR GG + GSV + F R+ +V ++ T+ D+D +L
Sbjct: 96 VMVSTLTDNRNRTAAAVRSAFTHHGGSLGTNGSVSYNFDRKGYIVVLRDDTEDDEDTMLM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
ALDAGA+D+ V +D+ Y++ + N + L+ +G ++ DN
Sbjct: 156 EALDAGADDM---KVTDDE---------YQIFTDPSNMVAVRDALQASG--YKLDNSEVR 201
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
L P T EV ++ + LI +L E DDV VY
Sbjct: 202 LFPQTVTEVPEDKIAQYTGLIDELSENDDVQDVY 235
>gi|221308520|ref|ZP_03590367.1| hypothetical protein Bsubs1_03858 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312845|ref|ZP_03594650.1| hypothetical protein BsubsN3_03814 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317769|ref|ZP_03599063.1| hypothetical protein BsubsJ_03768 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322045|ref|ZP_03603339.1| hypothetical protein BsubsS_03859 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767180|ref|NP_388566.3| hypothetical protein BSU06840 [Bacillus subtilis subsp. subtilis
str. 168]
gi|402774913|ref|YP_006628857.1| protein YeeI [Bacillus subtilis QB928]
gi|449093400|ref|YP_007425891.1| response regulator aspartate phosphatase [Bacillus subtilis XF-1]
gi|452912363|ref|ZP_21960991.1| DNA-binding regulatory , YebC/PmpR family protein [Bacillus
subtilis MB73/2]
gi|254763394|sp|O31509.3|YEEI_BACSU RecName: Full=Probable transcriptional regulatory protein YeeI
gi|225184807|emb|CAB12504.3| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|402480098|gb|AFQ56607.1| YeeI [Bacillus subtilis QB928]
gi|407956367|dbj|BAM49607.1| hypothetical protein BEST7613_0676 [Bacillus subtilis BEST7613]
gi|407963638|dbj|BAM56877.1| hypothetical protein BEST7003_0676 [Bacillus subtilis BEST7003]
gi|449027315|gb|AGE62554.1| response regulator aspartate phosphatase [Bacillus subtilis XF-1]
gi|452117391|gb|EME07785.1| DNA-binding regulatory , YebC/PmpR family protein [Bacillus
subtilis MB73/2]
Length = 239
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 13/222 (5%)
Query: 11 WGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVY 70
+GR+ Y+ K+G P+P SN L VLE+AK VPK+I+ER I++A +E + E Y
Sbjct: 26 FGREIYVA-AKQGEPDPESNQALKVVLERAKTYSVPKNIIERAIEKAKGGAEENYDELRY 84
Query: 71 EVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA 130
E +G G I+V+ LT+ + R+ VR GG M GSV + F V+ ++ A
Sbjct: 85 EGFGPNGSMIIVDALTNNVNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVEGKTA 144
Query: 131 DKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFE 190
D+ + + D D++E EDD+ V + D + + + AG+
Sbjct: 145 DEALEILMEADVDVRDILE----EDDS--------AIVYAEPDQFHAVQEAFKNAGVEEF 192
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T +L + + + D+A E ++LI L +L+DV VY +
Sbjct: 193 TVAELTMLAQSEVTLPDDAKEQFEKLIDALEDLEDVQQVYHN 234
>gi|336054438|ref|YP_004562725.1| hypothetical protein WANG_0928 [Lactobacillus kefiranofaciens ZW3]
gi|333957815|gb|AEG40623.1| Hypothetical protein WANG_0928 [Lactobacillus kefiranofaciens ZW3]
Length = 242
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 108/217 (49%), Gaps = 21/217 (9%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GGP+P N L V++KA+ ++PKD ++R IK+A +E + E YE Y GGV+
Sbjct: 36 AKSGGPDPDGNPTLRMVIDKARSNNMPKDNIKRAIKKAEGGSEEHYDEITYEGYAPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRAR--VVNIKFTDADKDQLLD 137
+ VE LTD R+ + VR GG + GSV + F R V++ TDAD+DQ+L
Sbjct: 96 VFVEALTDNKNRTASDVRVAFTRNGGSLGATGSVAYMFDRKGYIVIDRSTTDADEDQVLL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYY---KVVSTSDNYTDITTKLREAGIPFETDNG 194
+DAG +D+ T +D E Y ++ + D KL +A +
Sbjct: 156 DVMDAGGDDL--------QTSDDAYEIYTDPKQLAAVRDALIKDGYKLADAEL------- 200
Query: 195 SELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
++P T V + E + L+ L + DDV VYT
Sbjct: 201 -TMVPQNTTPVPADKKEQFEHLVDALEDSDDVQNVYT 236
>gi|161367671|gb|ABX71163.1| P25 [Riemerella anatipestifer]
Length = 228
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 109/216 (50%), Gaps = 17/216 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P SN L ++ AK ++PKD VER IK+AS E + E Y+ YG GGV+
Sbjct: 16 VKAGGPDPDSNPALRRCIQNAKGANMPKDNVERAIKKASGADAENYEEITYDGYGQGGVA 75
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIK--FTDADKDQLLD 137
VE T+ TR+VA VR + G + G + F F R + ++ D ++
Sbjct: 76 FFVECTTNNSTRTVANVRAIFNKFDGNLGKNGELSFLFDRKGIFTLEKSLIKMDWEEFEM 135
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGS-E 196
+D GAED ++ DDT+ V + +++ ++ KL E GI E N +
Sbjct: 136 EMIDGGAED-----IDSDDTE-------VMVTTAFEDFGPLSHKLDELGI--EVKNAELQ 181
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P + V +E + N +++ + E DD+ VY +
Sbjct: 182 RIPNISKSVSEEQLIANMKMLQRFEEDDDIQNVYHN 217
>gi|118464014|ref|YP_882663.1| hypothetical protein MAV_3481 [Mycobacterium avium 104]
gi|254775931|ref|ZP_05217447.1| hypothetical protein MaviaA2_14845 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|166232599|sp|A0QIC5.1|Y3481_MYCA1 RecName: Full=Probable transcriptional regulatory protein MAV_3481
gi|118165301|gb|ABK66198.1| conserved hypothetical protein [Mycobacterium avium 104]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 15/212 (7%)
Query: 23 GGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGVSI 80
GG +P N L ++KAK+ VP + +ER KR + E G + YE Y GV++
Sbjct: 39 GGGDPAGNPTLYDAIQKAKKSSVPNENIERARKRGAGEEAGGADWQTITYEGYAPNGVAV 98
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
++E LTD R+ + VR + GG MADPGSV + F R VV + +D +L L
Sbjct: 99 LIECLTDNRNRAASEVRVAMTRNGGTMADPGSVSYLFSRKGVVTCEKNGLTEDDILAAVL 158
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
DAGAE+V ED D ++++ + + T L++AGI +++ P
Sbjct: 159 DAGAEEV------EDLGDS------FEIICEPTDLVAVRTALQDAGIDYDSAEAG-FQPS 205
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
T+ +D + + L+ L + DDV V+T+
Sbjct: 206 VTVPLDADGAQKVMRLVDALEDSDDVQDVWTN 237
>gi|116330276|ref|YP_799994.1| hypothetical protein LBJ_0543 [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|122281961|sp|Q04V34.1|Y543_LEPBJ RecName: Full=Probable transcriptional regulatory protein LBJ_0543
gi|116123965|gb|ABJ75236.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 249
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 116/213 (54%), Gaps = 13/213 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGVS 79
K GG +P N L + KAK +++PKD +ER IK+ + + + E+ +YE +G G++
Sbjct: 37 KMGGGDPEGNPRLRLAILKAKSVNMPKDNIERAIKKGTGELEGVVYEECLYECFGPAGIA 96
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
I+V +TDK +R+ ++ ++ GG +A GSV F + V+ ++ + +D+L+D+A
Sbjct: 97 IMVSAVTDKKSRTTPEIKSILTKLGGSLATSGSVSRLFEKKGVIVLESSQIGEDKLVDLA 156
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+ GAEDVI NE + Y+V++T D+Y + L E G+ E +
Sbjct: 157 VGEGAEDVI----NEGEV--------YRVITTPDDYESVLHALNEKGLKSEESEIRYIAL 204
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ D E + +LI +L DDV +V ++
Sbjct: 205 VSSEIADKEVAKKVMKLIEQLDGHDDVTSVTSN 237
>gi|294628365|ref|ZP_06706925.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292831698|gb|EFF90047.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRAS--EKGQEAFIEKVYEVYGYGGV 78
+ GG + N L ++KAK+ VP ++ IKR E G + +YE YG GV
Sbjct: 37 RMGGVDLDGNPTLYDAVQKAKKQSVPNKNIDSAIKRGGGLEAGGADYETIMYEGYGPNGV 96
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
++++E LTD R+ + VR + GG MADPGSV + F R VV + + +D +L
Sbjct: 97 AVLIECLTDNRNRAASDVRVAMTRNGGSMADPGSVSYLFNRKGVVIVPKGELTEDDVLAA 156
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
LDAGAE+V +D E+ ++V+S + + + T L+EAGI +++ + +
Sbjct: 157 VLDAGAEEV-------NDLGEN-----FEVLSEATDLVAVRTALQEAGIDYDSAE-ANFV 203
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P +E+D+E + +LI L + DDV V+ +
Sbjct: 204 PTMQVELDEEGAKKIFKLIDALEDSDDVQNVFAN 237
>gi|433480264|ref|ZP_20437549.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63041]
gi|432214596|gb|ELK70494.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63041]
Length = 242
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 30/224 (13%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGG 77
+ GG +P +N L LEKA E ++PKD V+R I + + +G E +IE YE YG GG
Sbjct: 36 ARMGGGDPGANPRLRLALEKAAENNIPKDNVQRAIDKGTGNLEGVE-YIELRYEGYGIGG 94
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
+++V+ LTD TR+VA VR GG + G V F F + + D+D L++
Sbjct: 95 AALMVDCLTDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFE-PGVDEDALME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAG-------IPFE 190
AL+AGAEDV+ N+D + E V++ +++ + + L AG +
Sbjct: 154 AALEAGAEDVV---TNDDGSIE--------VITAPNDWAGVKSALEAAGYKSVDGDVTMR 202
Query: 191 TDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI 234
N +EL D+A+++ K LI L +LDDV VYT +
Sbjct: 203 AQNETEL-------SGDDAVKMQK-LIDALEDLDDVQDVYTSAV 238
>gi|315924597|ref|ZP_07920816.1| glucose-1-phosphate adenylyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622127|gb|EFV02089.1| glucose-1-phosphate adenylyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 241
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
++GG +P N L + KAK ++P D ++R +K+ S + +A E++ YE YG GG
Sbjct: 36 AREGGGDPEMNAKLREAVAKAKAANMPNDNIDRAVKKGSGELNDAIYEEITYEGYGPGGA 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRA-RVVNIKFTDADKDQLLD 137
+++V+ LTD R+ A VR + GG + G V F F RA R+ + D D+D+L+
Sbjct: 96 AVIVQTLTDNKNRTAADVRHIFDKNGGNLGTNGCVGFLFERAGRIFVEQSDDIDEDELMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGAED+ +T ED Y++ + + ++ + L+ AG+ + ++
Sbjct: 156 TALDAGAEDM--------ETSEDG----YEIRTAASDFAQVLEALQNAGVSVASGEIAQ- 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T E+ +E + ++++ + DDV V+ +
Sbjct: 203 IPSTESELSEEDSKKMEKMLDMFDDNDDVQEVFHN 237
>gi|15838504|ref|NP_299192.1| hypothetical protein XF1906 [Xylella fastidiosa 9a5c]
gi|33517108|sp|Q9PC75.1|Y1906_XYLFA RecName: Full=Probable transcriptional regulatory protein XF_1906
gi|9107001|gb|AAF84712.1|AE004010_9 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 244
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 12/173 (6%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGVS 79
+ GG +P++N L V++KA ++ KD++ER IK+A + + E+V YE Y GGV+
Sbjct: 34 RAGGGDPSNNPSLRVVIDKALASNMSKDVIERAIKKAIGEMEGVQYEEVRYEGYAPGGVA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++V+ LTD R+V+ VR CGG M GSV F F+R V++ AD++++ + A
Sbjct: 94 VIVDCLTDNRLRTVSDVRHAFSKCGGNMGTEGSVAFMFKRLGVLSYAHAIADEERITEAA 153
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFET 191
+DAGAEDV+ EDD E V++T + ++ + ++ G+ P+
Sbjct: 154 IDAGAEDVM--VYTEDDEIE--------VITTPEAFSRVKEEMAALGLMPYHA 196
>gi|403386981|ref|ZP_10929038.1| hypothetical protein CJC12_03887 [Clostridium sp. JC122]
Length = 246
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEK-VYEVYGYGGV 78
VK GGP+ +N L V+ KAK ++P D ++R IK+A+ + E VYE YG G
Sbjct: 36 VKNGGPSEDTNAKLRDVVAKAKAANMPNDNIQRAIKKAAGELNAVDYETIVYEGYGPEGT 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFR-RARVVNIKFTDADKDQLLD 137
+++VE LTD R+ VR GG M G V F F+ + +V K D+D+L+
Sbjct: 96 AVIVECLTDNKNRTAGNVRYAFSKQGGNMGSTGCVGFMFQSKGEIVIEKIDSIDEDELMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+ALDAGAED E + V + +++ + L E+GI F + G ++
Sbjct: 156 LALDAGAEDFAAE------------EEVFVVTTAPEDFGKVREALSESGIEF-LEAGVKM 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+P T E+++E ++++ L + +DV VY +
Sbjct: 203 IPDTYTEINEETAVKFQKMLDVLEDDEDVQEVYHN 237
>gi|116492988|ref|YP_804723.1| hypothetical protein PEPE_1240 [Pediococcus pentosaceus ATCC 25745]
gi|421895079|ref|ZP_16325557.1| conserved hypothetical protein [Pediococcus pentosaceus IE-3]
gi|122265548|sp|Q03EU1.1|Y1240_PEDPA RecName: Full=Probable transcriptional regulatory protein PEPE_1240
gi|116103138|gb|ABJ68281.1| hypothetical protein PEPE_1240 [Pediococcus pentosaceus ATCC 25745]
gi|385271999|emb|CCG90929.1| conserved hypothetical protein [Pediococcus pentosaceus IE-3]
Length = 245
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK GGP+P+SN L +++KA+ ++PKD ++R + + S G + E YE YG G +
Sbjct: 36 VKAGGPDPSSNPQLRLMMDKARAANMPKDNIKRAVDKGSGAGGANYEEITYEGYGPAGTA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK--DQLLD 137
I+V LTD R+ AAVR GG + GSV + F R + I D DK D +++
Sbjct: 96 IIVSALTDNKNRTAAAVRSAFTHHGGSLGASGSVSYMFDRKGYIVISREDLDKNEDDMME 155
Query: 138 IALDAGAEDV 147
A+DAGA+DV
Sbjct: 156 DAIDAGADDV 165
>gi|418940872|ref|ZP_13494219.1| UPF0082 protein yeeN [Rhizobium sp. PDO1-076]
gi|375052412|gb|EHS48831.1| UPF0082 protein yeeN [Rhizobium sp. PDO1-076]
Length = 248
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 19/238 (7%)
Query: 1 MQRK--QSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNI 54
M RK Q IR R + K G P+PT N L ++ AK +PKD ++R I
Sbjct: 11 MHRKGKQDGIRSKMFSKLAREITVAAKVGLPDPTMNAALRLAVQNAKAQSMPKDNIDRAI 70
Query: 55 KRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM 114
K+AS E + YE YG GG +I+VE LTD R+ ++VR GG + + GSV
Sbjct: 71 KKASGADAETYDAIRYEGYGPGGTAIIVEALTDNRNRTASSVRSTFTKAGGALGETGSVS 130
Query: 115 FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDN 174
F F + K + D D++++ A++AGAEDV+ +DED + + ++
Sbjct: 131 FSFDHVGELTYKASVGDADKVMEAAIEAGAEDVV--------SDEDG----HTIYCAFED 178
Query: 175 YTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+++ L ET + P T+ VD++ +LI L + DDV VY++
Sbjct: 179 MNEVSKALEPVLGEAETVK-AIWRPQNTVPVDEDKARSLMKLIDTLEDDDDVQNVYSN 235
>gi|26987949|ref|NP_743374.1| hypothetical protein PP_1214 [Pseudomonas putida KT2440]
gi|148546486|ref|YP_001266588.1| hypothetical protein Pput_1243 [Pseudomonas putida F1]
gi|395447685|ref|YP_006387938.1| hypothetical protein YSA_07508 [Pseudomonas putida ND6]
gi|397698455|ref|YP_006536338.1| hypothetical protein T1E_5723 [Pseudomonas putida DOT-T1E]
gi|421524132|ref|ZP_15970758.1| hypothetical protein PPUTLS46_19901 [Pseudomonas putida LS46]
gi|33517008|sp|Q88NJ3.1|Y1214_PSEPK RecName: Full=Probable transcriptional regulatory protein PP_1214
gi|24982661|gb|AAN66838.1|AE016312_9 conserved hypothetical protein TIGR01033 [Pseudomonas putida
KT2440]
gi|148510544|gb|ABQ77404.1| protein of unknown function DUF28 [Pseudomonas putida F1]
gi|388561682|gb|AFK70823.1| hypothetical protein YSA_07508 [Pseudomonas putida ND6]
gi|397335185|gb|AFO51544.1| UPF0082 protein [Pseudomonas putida DOT-T1E]
gi|402752095|gb|EJX12603.1| hypothetical protein PPUTLS46_19901 [Pseudomonas putida LS46]
Length = 248
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 18/236 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + K+GGP+P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGTNESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ ++D L++ A++A A+DV+ + V ++ +++
Sbjct: 134 FERKGQISFA-PGVEEDALMEAAMEADADDVVANDDGS-----------FDVFTSFNSFY 181
Query: 177 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L EAG D + P T+ E+D + E +LI L +LDDV VY++
Sbjct: 182 AVRNALEEAGFK-AADAEIVMQPTTSAELDQDGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|398844061|ref|ZP_10601168.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM84]
gi|398254945|gb|EJN39995.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM84]
Length = 248
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 16/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K+GG +P SN L L+KA ++ +DI++R + R + + +E++ YE YG GGV
Sbjct: 36 AKQGGADPASNPRLRLALDKALGANMSRDIIDRAVARGAGTNENDNVEELSYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+I+VE +TD R+ AAVR CGG + GSV + F R I F D+D L++
Sbjct: 96 AIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTDGSVAYLFERKG--QISFAPGIDEDALME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
A++A A+DV+ ++V ++ +++ + L EAG D +
Sbjct: 154 AAMEADADDVVANDDGS-----------FEVFTSFNSFYAVRNALEEAGFK-AADAEIVM 201
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P T+ E+D E E +LI L +LDDV VY++
Sbjct: 202 QPTTSAELDQEGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|429750598|ref|ZP_19283616.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 332 str. F0381]
gi|429164294|gb|EKY06437.1| DNA-binding regulatory protein, YebC/PmpR family [Capnocytophaga
sp. oral taxon 332 str. F0381]
Length = 239
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 13/211 (6%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
VK+GGP+P SN+ L AV++ AK ++PK+ +ER IK+ASEK + E ++E Y G++
Sbjct: 34 VKEGGPHPESNSRLRAVIQNAKAANMPKENIERAIKKASEKDTANYKEVLFEGYAPHGIA 93
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
+++E TD R+VA +R C G + GSV F F I D ++L
Sbjct: 94 VLIETATDNNNRTVANIRSYFNKCNGTLGTSGSVEFMFDHTCNFRINAEGIDPEELELEM 153
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLP 199
+D GAE+V DED Y + +++ I +L I +G E +P
Sbjct: 154 IDFGAEEVF--------ADEDGILIY----APFESFGAIQKELESRNIEI-LSSGFERIP 200
Query: 200 ITTIEVDDEAMELNKELIAKLLELDDVDAVY 230
T E+ E ++L+ K+ E +DV VY
Sbjct: 201 QVTKELTPEEQADVEKLLEKIEEDEDVQNVY 231
>gi|291533992|emb|CBL07105.1| conserved hypothetical protein TIGR01033 [Megamonas hypermegale
ART12/1]
Length = 243
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 116/219 (52%), Gaps = 23/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-----FIEKVYEVYG 74
V+ GG +PT N L L KAK ++PKD NI RA +KG A + E +YE YG
Sbjct: 36 VRMGGADPTGNMRLKLALSKAKSNNIPKD----NINRAIQKGLGASDGSNYEELIYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNI-KFTDADKD 133
G ++++EV+TD R+ A +R + GG + + G V + F + + + K D++
Sbjct: 92 PAGSAVMLEVMTDNRNRTAADIRHLFSKYGGNLGETGCVGWMFHKKAIFVVDKEAFDDEE 151
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
L+ IALDAGAED EDD+ +++ + +++ I+ L E I ++
Sbjct: 152 SLMMIALDAGAEDFKA----EDDS--------FEITAAPEDFDAISQALEENNIE-TVES 198
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++P TT++V+ + E + L+ L E DDV VY++
Sbjct: 199 EITMIPDTTVKVEGKDAEKMQTLLDMLEEHDDVQNVYSN 237
>gi|116871742|ref|YP_848523.1| hypothetical protein lwe0322 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740620|emb|CAK19740.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 239
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 12/212 (5%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K G P+P SN L V+E+AK +VPK I++R I++A G E + E YE +G G I
Sbjct: 35 KSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPSGSMI 94
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+V+ LT+ + R+ + VR GG M GSV + F + ++ DA D+LL++ +
Sbjct: 95 IVDALTNNVNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDA--DELLELLM 152
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+A DV D DED Y + +++ + L+ AGI T E++P
Sbjct: 153 EADI-DV------RDILDEDGQAIIY---AEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQ 202
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
I++ E +E + LI L +L+DV VY +
Sbjct: 203 NDIQLSGEDLEKFERLIDALEDLEDVQKVYHN 234
>gi|206896191|ref|YP_002247236.1| hypothetical protein COPRO5265_0905 [Coprothermobacter
proteolyticus DSM 5265]
gi|226696017|sp|B5Y8Y9.1|Y905_COPPD RecName: Full=Probable transcriptional regulatory protein
COPRO5265_0905
gi|206738808|gb|ACI17886.1| conserved hypothetical protein [Coprothermobacter proteolyticus DSM
5265]
Length = 248
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 23/218 (10%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE--KGQEAFIEKVYEVYGYGGV 78
++GGPNP +N L ++KA+ ++PKD +++ I + + +GQE F+E +YE YG GGV
Sbjct: 37 REGGPNPDTNLRLRVAIDKARAANMPKDNIDKAIAKGAGNLEGQE-FVEALYEGYGPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK-DQLLD 137
+I+VEV TD R+ A VR + GG +A+ G+V ++F R V+ + D+L
Sbjct: 96 AILVEVTTDNKNRTAADVRRIFSRHGGTLAESGAVSWQFERKGVIELNKEQVPSIDELTL 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
+D G +DV+E EDD+ + + D + + L E GI E
Sbjct: 156 ELIDFGVDDVLE----EDDS--------VTIYTQPDALSKVLDHLNEVGIEVSRAE-LEF 202
Query: 198 LPITTIEVDDEAMELNKELIAKLLEL---DDVDAVYTD 232
+P I V +E +++++ L EL DDV VYT+
Sbjct: 203 IPKNYISVSEEE---GRKILSMLEELDDNDDVQEVYTN 237
>gi|154498059|ref|ZP_02036437.1| hypothetical protein BACCAP_02040 [Bacteroides capillosus ATCC
29799]
gi|150273049|gb|EDN00206.1| DNA-binding regulatory protein, YebC/PmpR family
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 242
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 116/216 (53%), Gaps = 16/216 (7%)
Query: 20 VKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-EAFIEKVYEVYGYGG 77
VK GG +P +N+ LA V+ KAK ++P D ++R I +A G +++ VYE YG G
Sbjct: 36 VKTGGSGDPANNSRLATVIAKAKAANMPNDNIKRTIDKALGSGNTDSYENVVYEGYGPCG 95
Query: 78 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 137
V+++VE LTD R+ VR + GG + G V + F + V+ I+ D D+D ++
Sbjct: 96 VAVIVEALTDNRNRTAPFVRHIFDKYGGNLGATGCVSWSFDQKGVIVIEREDLDEDTVMM 155
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
ALDAGA+D+ +DD +++ ++ D + ++ KL E G F + E+
Sbjct: 156 DALDAGADDMTA----DDDC--------FEITTSPDVFGEVLAKLEEKGYVFASAE-VEM 202
Query: 198 LPITTIEVDDEAMELNKE-LIAKLLELDDVDAVYTD 232
+P ++++ E N E LI L E DDV VY +
Sbjct: 203 VPQNYVKLESEDDVKNMEKLIDFLEENDDVQNVYHN 238
>gi|16802414|ref|NP_463899.1| hypothetical protein lmo0369 [Listeria monocytogenes EGD-e]
gi|254828997|ref|ZP_05233684.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|255025771|ref|ZP_05297757.1| hypothetical protein LmonocytFSL_04500 [Listeria monocytogenes FSL
J2-003]
gi|284800656|ref|YP_003412521.1| hypothetical protein LM5578_0403 [Listeria monocytogenes 08-5578]
gi|284993842|ref|YP_003415610.1| hypothetical protein LM5923_0402 [Listeria monocytogenes 08-5923]
gi|315280839|ref|ZP_07869624.1| hypothetical protein NT05LM_0512 [Listeria marthii FSL S4-120]
gi|386042708|ref|YP_005961513.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386049297|ref|YP_005967288.1| hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|386052645|ref|YP_005970203.1| hypothetical protein [Listeria monocytogenes Finland 1998]
gi|404282801|ref|YP_006683698.1| hypothetical protein LMOSLCC2372_0371 [Listeria monocytogenes
SLCC2372]
gi|404409610|ref|YP_006695198.1| hypothetical protein LMOSLCC5850_0371 [Listeria monocytogenes
SLCC5850]
gi|404412462|ref|YP_006698049.1| hypothetical protein LMOSLCC7179_0356 [Listeria monocytogenes
SLCC7179]
gi|405757356|ref|YP_006686632.1| hypothetical protein LMOSLCC2479_0369 [Listeria monocytogenes
SLCC2479]
gi|33517072|sp|Q8Y9Z8.1|Y369_LISMO RecName: Full=Probable transcriptional regulatory protein lmo0369
gi|16409747|emb|CAC98448.1| lmo0369 [Listeria monocytogenes EGD-e]
gi|258601408|gb|EEW14733.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|284056218|gb|ADB67159.1| hypothetical protein LM5578_0403 [Listeria monocytogenes 08-5578]
gi|284059309|gb|ADB70248.1| hypothetical protein LM5923_0402 [Listeria monocytogenes 08-5923]
gi|313615512|gb|EFR88872.1| hypothetical protein NT05LM_0512 [Listeria marthii FSL S4-120]
gi|345535942|gb|AEO05382.1| hypothetical protein LMRG_00061 [Listeria monocytogenes 10403S]
gi|346423143|gb|AEO24668.1| UPF0082 protein [Listeria monocytogenes FSL R2-561]
gi|346645296|gb|AEO37921.1| conserved hypothetical protein [Listeria monocytogenes Finland
1998]
gi|404229436|emb|CBY50840.1| hypothetical protein LMOSLCC5850_0371 [Listeria monocytogenes
SLCC5850]
gi|404232303|emb|CBY53706.1| hypothetical protein LMOSLCC2372_0371 [Listeria monocytogenes
SLCC2372]
gi|404235238|emb|CBY56640.1| hypothetical protein LMOSLCC2479_0369 [Listeria monocytogenes
SLCC2479]
gi|404238161|emb|CBY59562.1| hypothetical protein LMOSLCC7179_0356 [Listeria monocytogenes
SLCC7179]
Length = 239
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 12/212 (5%)
Query: 21 KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSI 80
K G P+P SN L V+E+AK +VPK I++R I++A G E + E YE +G G I
Sbjct: 35 KSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMI 94
Query: 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIAL 140
+V+ LT+ + R+ + VR GG M GSV + F + ++ DA D+LL++ +
Sbjct: 95 IVDALTNNVNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDA--DELLELLM 152
Query: 141 DAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI 200
+A DV D DED Y + +++ + L+ AGI T E++P
Sbjct: 153 EADI-DV------RDILDEDGQAIIY---AEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQ 202
Query: 201 TTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
I++ E +E + LI L +L+DV VY +
Sbjct: 203 NDIQLSGEDLEKFERLIDALEDLEDVQKVYHN 234
>gi|227825062|ref|ZP_03989894.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|352684147|ref|YP_004896132.1| hypothetical protein Acin_0759 [Acidaminococcus intestini RyC-MR95]
gi|226905561|gb|EEH91479.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|350278802|gb|AEQ21992.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 243
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 113/219 (51%), Gaps = 24/219 (10%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQ-----EAFIEKVYEVYG 74
VK GG +PT N L L KAK ++PK+ NIKRA KG+ + E YE YG
Sbjct: 36 VKMGGSDPTGNMRLKLALSKAKANNIPKE----NIKRAIAKGEGTTEGSNYEEITYEGYG 91
Query: 75 YGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDAD-KD 133
GV+I++ LTD R+ A VR V GG M + G V + F+ + I+ A +D
Sbjct: 92 PAGVAIMISALTDNRNRTAADVRHVFSK-GGNMGESGCVSWMFKNKGLFTIEKEGAPAED 150
Query: 134 QLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDN 193
++++IAL+AGAED+ +T++D Y + + ++Y + L + I
Sbjct: 151 EVMEIALEAGAEDM--------ETNDDT----YVITTAPEDYDAVEQALADHNINVAMSE 198
Query: 194 GSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
S L+P TI V E E +++I ELDDV VYT+
Sbjct: 199 LS-LIPDNTIAVTGEDAEKVQKMIDSFDELDDVQDVYTN 236
>gi|88705603|ref|ZP_01103313.1| protein containing DUF28 [Congregibacter litoralis KT71]
gi|88700116|gb|EAQ97225.1| protein containing DUF28 [Congregibacter litoralis KT71]
Length = 248
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 18/216 (8%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
K+GGP P N L A ++KA ++ +D ++R I R + + +E++ YE Y GGV
Sbjct: 36 AKQGGPLPEDNPRLRAAVDKALGSNMTRDTIDRAIARGAGNNEADDVEELTYEGYAPGGV 95
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDA-DKDQLLD 137
+++VEV+TD R+VA VR GG + GSV + F R I F D++Q+++
Sbjct: 96 AVLVEVMTDNRNRTVAEVRHAFSKRGGNLGTDGSVAYLFERKG--QISFAPGTDEEQVME 153
Query: 138 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGI-PFETDNGSE 196
AL+AGAEDV E + +V + ++ + + T L +G+ P E++
Sbjct: 154 AALEAGAEDV-----------EAADDGSIEVTTAWEDLSAVKTTLEASGLEPAESE--VT 200
Query: 197 LLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
++ TT+ VD E LI L ELDDV VY++
Sbjct: 201 MIASTTVPVDASGAETVMGLIDALEELDDVQNVYSN 236
>gi|386010859|ref|YP_005929136.1| hypothetical protein PPUBIRD1_1251 [Pseudomonas putida BIRD-1]
gi|313497565|gb|ADR58931.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
Length = 248
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 18/236 (7%)
Query: 2 QRKQSCIRGWGRKSYLRNV----KKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57
+ +Q RG ++R + K+GGP+P SN L L+KA ++ +DI++R + R
Sbjct: 14 KERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGANMSRDIIDRAVARG 73
Query: 58 SEKGQEAFIEKV-YEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK 116
+ + +E++ YE YG GGV+I+VE +TD R+ AAVR CGG + GSV +
Sbjct: 74 AGTNESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFTKCGGNLGTDGSVAYL 133
Query: 117 FRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYT 176
F R ++ ++D L++ A++A A+DV+ + V ++ +++
Sbjct: 134 FERKGQISFA-PGVEEDALMEAAMEADADDVVANDDGS-----------FDVFTSFNSFY 181
Query: 177 DITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
+ L EAG D + P T+ E+D + E +LI L +LDDV VY++
Sbjct: 182 AVRNALEEAGFK-AADAEIVMQPTTSAELDQDGAEKVLKLIDMLEDLDDVQNVYSN 236
>gi|319780992|ref|YP_004140468.1| hypothetical protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166880|gb|ADV10418.1| protein of unknown function DUF28 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 249
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P+ N L ++ AK + +PKD ++R + +AS E + YE YG GGV+
Sbjct: 36 AKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRAVNKASMGDAENYEAVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD RS + VR GG M + GSV F + R + + D++++ A
Sbjct: 96 VIVEALTDNRNRSASNVRAAFTKAGGAMGETGSVSFMWDRVGEIYYPASAGSADKVMEAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
++AGA+DV +TDE+ Y + + + T L EA +L+
Sbjct: 156 IEAGADDV--------ETDEEGHTIYCAFENLGEVSKALETSLGEA-------ESVKLIW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P + VD+E + +L+A L + DDV +VY +
Sbjct: 201 RPQNNVPVDEERAQSLMKLVATLEDDDDVQSVYAN 235
>gi|399993342|ref|YP_006573582.1| hypothetical protein PGA1_c21770 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|398657897|gb|AFO91863.1| hypothetical protein PGA1_c21770 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 246
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 17/215 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K G P+P N L +++AK VPKD+++R IK+++ + + E YE YG GV+
Sbjct: 36 AKMGDPDPEKNPRLRLAVKEAKSQSVPKDVIDRAIKKSTAGEGDDYEEIRYEGYGPNGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE +TD R+ + VR GG + + GSV F F R V T D D ++ A
Sbjct: 96 VIVEAMTDNRNRTASTVRSTFSKNGGNLGETGSVGFMFDRKGEVTYSATVGDADTVMMAA 155
Query: 140 LDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL- 198
+DAGAEDV D +E + + + +++ L G E+D+ ++L+
Sbjct: 156 IDAGAEDV------------DSSEDGHVIYCADTDLNEVSNALE--GELGESDS-TKLVW 200
Query: 199 -PITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232
P TT E+D E M+ +L+ L + DDV V T+
Sbjct: 201 KPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 235
>gi|319406246|emb|CBI79883.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 248
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K+G P+PT N L ++ AK +PKD +ER IK+AS E + E YE YG GGV+
Sbjct: 36 AKQGSPDPTMNPRLRLAVQNAKAQSMPKDNIERAIKKASGGDAENYDEVRYEGYGPGGVA 95
Query: 80 IVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIA 139
++VE LTD R+ + VR GG + + GSV F F R + K D +++ A
Sbjct: 96 VIVEALTDNRNRTASNVRAAFTKSGGALGETGSVGFMFNRIGEIIYKLESGTADTIMEAA 155
Query: 140 LDAGAEDV 147
++AGAEDV
Sbjct: 156 IEAGAEDV 163
>gi|260654959|ref|ZP_05860447.1| glucose-1-phosphate adenylyltransferase [Jonquetella anthropi E3_33
E1]
gi|424844819|ref|ZP_18269430.1| DNA-binding regulatory protein, YebC/PmpR family [Jonquetella
anthropi DSM 22815]
gi|260630274|gb|EEX48468.1| glucose-1-phosphate adenylyltransferase [Jonquetella anthropi E3_33
E1]
gi|363986257|gb|EHM13087.1| DNA-binding regulatory protein, YebC/PmpR family [Jonquetella
anthropi DSM 22815]
Length = 251
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 24/225 (10%)
Query: 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEV 72
K+ + K GG +P N L A +++AK VP ++R I+R + + + A E++ YE
Sbjct: 30 KAIIIAAKDGGGDPAMNVRLKAAIDRAKAASVPASNIDRAIQRGTGEIEGAMYEELTYEG 89
Query: 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADK 132
YG GV++VV VLTD R+ +R +++ GG M GSVM+ F R + I+ D+
Sbjct: 90 YGVEGVALVVSVLTDNRNRTTPEIRAMLEHNGGTMGTSGSVMWMFDRKGQITIE-GKVDE 148
Query: 133 DQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETD 192
D+LL+ AL+AGA+DV + +ED A V + + +D+ L++AG T+
Sbjct: 149 DELLNAALEAGADDV--------EVEEDSA----LVTTDPASLSDVAESLKKAGYNV-TE 195
Query: 193 NGSELLPITTIEVDDEAMELNK-ELIAKLLEL----DDVDAVYTD 232
L+P TT+ + E+NK + KL++L DDV VY +
Sbjct: 196 AEQPLVPKTTVTIS----EVNKARKLMKLIDLLEGHDDVQDVYAN 236
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.134 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,597,071,331
Number of Sequences: 23463169
Number of extensions: 148982133
Number of successful extensions: 463866
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3616
Number of HSP's successfully gapped in prelim test: 423
Number of HSP's that attempted gapping in prelim test: 453851
Number of HSP's gapped (non-prelim): 4156
length of query: 234
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 96
effective length of database: 9,121,278,045
effective search space: 875642692320
effective search space used: 875642692320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 74 (33.1 bits)