Query 026745
Match_columns 234
No_of_seqs 116 out of 1053
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 21:06:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3q_A Transcriptional regulat 100.0 1.6E-77 5.4E-82 523.3 22.4 217 3-232 13-239 (247)
2 1lfp_A Hypothetical protein AQ 100.0 2.3E-77 7.9E-82 522.4 22.8 218 2-232 9-237 (249)
3 1mw7_A Hypothetical protein HP 100.0 3.6E-77 1.2E-81 519.1 21.2 218 2-233 7-239 (240)
4 1kon_A Protein YEBC, YEBC; alp 100.0 7.2E-77 2.5E-81 519.3 19.5 217 2-232 12-238 (249)
5 2jsx_A Protein NAPD; TAT, proo 78.8 1.8 6E-05 31.8 3.5 67 164-232 8-78 (95)
6 2ko1_A CTR148A, GTP pyrophosph 69.0 6.7 0.00023 26.7 4.4 57 171-230 15-76 (88)
7 2lqj_A Mg2+ transport protein; 64.6 5.7 0.0002 28.9 3.4 66 166-232 11-86 (94)
8 4aff_A Nitrogen regulatory pro 59.1 16 0.00055 27.4 5.2 24 165-188 3-26 (116)
9 2f1f_A Acetolactate synthase i 50.7 22 0.00075 28.4 4.9 60 170-231 12-76 (164)
10 3lh2_S 4E10_1VI7A_S0_002_N (T8 48.4 9.2 0.00031 26.1 2.1 44 165-211 9-54 (76)
11 1sfu_A 34L protein; protein/Z- 47.2 13 0.00043 26.2 2.6 28 34-61 30-57 (75)
12 1p65_A Nucleocapsid protein; v 46.1 17 0.00059 24.8 3.0 27 90-116 23-51 (73)
13 2pc6_A Probable acetolactate s 44.7 27 0.00094 27.8 4.6 60 170-231 13-77 (165)
14 3lk7_A UDP-N-acetylmuramoylala 39.0 30 0.001 31.3 4.6 59 33-97 283-342 (451)
15 3ncq_A Nitrogen regulatory pro 38.3 30 0.001 26.0 3.7 24 165-188 3-26 (119)
16 3mhy_A PII-like protein PZ; PI 38.0 24 0.00082 26.1 3.1 24 165-188 3-26 (112)
17 1gg4_A UDP-N-acetylmuramoylala 37.0 41 0.0014 30.5 5.1 62 33-99 286-347 (452)
18 1qbj_A Protein (double-strande 36.9 21 0.0007 25.0 2.4 41 14-59 13-53 (81)
19 1i1g_A Transcriptional regulat 36.2 49 0.0017 24.4 4.7 67 165-232 67-134 (141)
20 3m05_A Uncharacterized protein 35.7 30 0.001 26.1 3.3 50 164-213 7-61 (114)
21 2x5o_A UDP-N-acetylmuramoylala 35.4 24 0.00082 31.8 3.3 60 33-98 272-332 (439)
22 3t9z_A GLNK3, nitrogen regulat 35.2 34 0.0012 25.7 3.6 24 165-188 3-26 (118)
23 2cvi_A 75AA long hypothetical 35.0 62 0.0021 21.8 4.7 66 165-232 5-72 (83)
24 1hwu_A PII protein; herbaspiri 34.6 35 0.0012 24.9 3.6 24 165-188 3-26 (112)
25 3hn7_A UDP-N-acetylmuramate-L- 33.9 62 0.0021 30.0 5.9 60 33-99 347-407 (524)
26 2ns1_B Nitrogen regulatory pro 33.9 37 0.0013 25.1 3.6 25 164-188 6-30 (116)
27 3bzq_A Nitrogen regulatory pro 33.8 37 0.0013 24.8 3.6 25 164-188 4-28 (114)
28 2eg2_A Nitrogen regulatory pro 33.2 38 0.0013 24.7 3.6 24 165-188 3-26 (112)
29 2f1f_A Acetolactate synthase i 32.9 1.8E+02 0.0061 22.9 8.1 134 81-224 5-143 (164)
30 1vi7_A Hypothetical protein YI 32.5 97 0.0033 25.8 6.3 53 164-219 140-194 (217)
31 1e8c_A UDP-N-acetylmuramoylala 32.3 87 0.003 28.6 6.6 60 33-99 311-371 (498)
32 1b0n_B Protein (SINI protein); 32.1 75 0.0026 20.9 4.4 32 26-57 8-39 (57)
33 3fyb_A Protein of unknown func 31.7 22 0.00075 26.3 1.9 21 209-229 14-34 (104)
34 3l7p_A Putative nitrogen regul 31.6 30 0.001 25.7 2.8 23 165-187 5-27 (115)
35 2gw8_A PII signal transduction 31.6 42 0.0014 24.6 3.6 24 165-188 5-28 (114)
36 3dfe_A Putative PII-like signa 31.4 33 0.0011 25.5 2.9 24 164-187 7-30 (111)
37 1owx_A Lupus LA protein, SS-B, 30.2 48 0.0016 25.0 3.7 49 74-127 15-64 (121)
38 2j9c_A GLNK1, hypothetical nit 30.1 46 0.0016 24.6 3.6 24 165-188 5-28 (119)
39 1vfj_A Nitrogen regulatory pro 29.8 47 0.0016 24.3 3.6 24 165-188 3-26 (116)
40 2lnb_A Z-DNA-binding protein 1 29.6 42 0.0014 23.7 3.0 55 13-74 21-76 (80)
41 1qgp_A Protein (double strande 29.5 43 0.0015 22.9 3.1 40 14-59 17-57 (77)
42 2fgc_A Acetolactate synthase, 29.5 89 0.0031 25.6 5.5 134 81-223 31-169 (193)
43 2ovm_B NCOR, progesterone rece 27.9 29 0.00099 19.1 1.5 19 25-43 5-23 (26)
44 1ufw_A Synaptojanin 2; RNP dom 27.2 1.8E+02 0.0061 21.1 6.2 67 71-147 9-82 (95)
45 2o35_A Hypothetical protein DU 26.8 27 0.00091 25.9 1.6 21 209-229 15-35 (105)
46 2pc6_A Probable acetolactate s 26.6 1.8E+02 0.0063 22.9 6.8 129 81-223 6-143 (165)
47 2am1_A SP protein, UDP-N-acety 26.3 88 0.003 28.1 5.4 61 33-99 278-339 (454)
48 2zbc_A 83AA long hypothetical 25.7 95 0.0033 20.4 4.4 64 165-232 5-72 (83)
49 1j6u_A UDP-N-acetylmuramate-al 25.3 1.3E+02 0.0046 27.2 6.5 59 33-98 282-343 (469)
50 2f06_A Conserved hypothetical 25.0 2.1E+02 0.0071 21.1 9.6 93 82-190 9-101 (144)
51 1p3d_A UDP-N-acetylmuramate--a 24.6 99 0.0034 28.0 5.5 62 33-97 296-358 (475)
52 1tc3_C Protein (TC3 transposas 24.3 55 0.0019 18.7 2.6 21 38-58 26-46 (51)
53 2e1c_A Putative HTH-type trans 24.2 95 0.0032 24.2 4.6 66 165-232 90-156 (171)
54 2f00_A UDP-N-acetylmuramate--L 24.2 1.3E+02 0.0044 27.4 6.2 63 33-98 297-365 (491)
55 2o66_A PII protein; regulation 24.2 66 0.0023 24.6 3.6 25 164-188 14-38 (135)
56 2iii_A S-adenosylmethionine de 22.2 1E+02 0.0034 23.7 4.3 38 49-86 26-63 (135)
57 1vk8_A Hypothetical protein TM 22.2 2E+02 0.0067 21.1 5.7 48 177-232 37-86 (106)
58 2cyy_A Putative HTH-type trans 22.1 1.3E+02 0.0044 22.5 4.9 66 165-232 70-136 (151)
59 2nzc_A Hypothetical protein; s 22.1 1.2E+02 0.0043 21.5 4.4 59 81-144 9-71 (86)
60 2pn6_A ST1022, 150AA long hypo 21.3 1E+02 0.0035 22.9 4.1 67 165-232 66-135 (150)
61 2cz4_A Hypothetical protein TT 21.0 78 0.0027 23.6 3.3 25 164-188 26-50 (119)
62 2heo_A Z-DNA binding protein 1 20.7 69 0.0023 21.0 2.7 22 37-58 29-50 (67)
63 1fc3_A SPO0A; response regulat 20.1 57 0.002 24.7 2.4 21 38-58 53-73 (120)
No 1
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=100.00 E-value=1.6e-77 Score=523.31 Aligned_cols=217 Identities=29% Similarity=0.509 Sum_probs=200.4
Q ss_pred chhhhhhcchh---------hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEEE
Q 026745 3 RKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYEV 72 (234)
Q Consensus 3 ~~~s~~~~~~~---------keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE~ 72 (234)
|||+|.+++++ |+|++|||+|||||+.||+||.+|++||++||||++||||||||+|. +..+|++++|||
T Consensus 13 Ikh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~yeei~YEg 92 (247)
T 4f3q_A 13 IKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGAGDNLVEVRYEG 92 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC-----CCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCcCCceEEEEEE
Confidence 56777766554 99999999999999999999999999999999999999999999985 456899999999
Q ss_pred EecCCcEEEEEEecCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCC
Q 026745 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPV 152 (234)
Q Consensus 73 ~gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~ 152 (234)
||||||+|||||||||+|||+++||++|+|+||+|+++|||+|+|+|+|+|.+.+. .++|++||.|||+||+||++.
T Consensus 93 yGPgGvaviVe~lTDN~nRT~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~~~d~~~e~aieaGAeDv~~~-- 169 (247)
T 4f3q_A 93 YGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPN-SDEEKIMEIALEVGAEDVTTN-- 169 (247)
T ss_dssp ECGGGCEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEECTT-CCHHHHHHHHHHHTCSEEEEC--
T ss_pred EcCCCeEEEEEEeCCCHhHHHHHHHHHHHhcCceECCCCceeEEEeeeEEEEECCC-CCHHHHHHHHHhCCCceeeec--
Confidence 99999999999999999999999999999999999999999999999999999764 689999999999999999752
Q ss_pred CCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeecc
Q 026745 153 NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTD 232 (234)
Q Consensus 153 ~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N 232 (234)
+ ++.|+|+|+|++|.+|+++|++.||++.. +++.|+|+++|+|++++.+++.+|+++|+++||||+||||
T Consensus 170 ------e---dg~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~Led~dDVq~Vy~N 239 (247)
T 4f3q_A 170 ------D---DGSIDVTTLPEDFEKIRNAMKAADLNPSH-AEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSN 239 (247)
T ss_dssp ------T---TSCEEEEECGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCEECCHHHHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred ------C---CceEEEEECHHHHHHHHHHHHHcCCCeeE-EEEEEecCCccccCHHHHHHHHHHHHHhhcCcCcceeeEC
Confidence 1 24699999999999999999999999986 5999999999999999999999999999999999999999
No 2
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=100.00 E-value=2.3e-77 Score=522.45 Aligned_cols=218 Identities=30% Similarity=0.509 Sum_probs=203.3
Q ss_pred cchhhhhhcchh---------hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEE
Q 026745 2 QRKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYE 71 (234)
Q Consensus 2 ~~~~s~~~~~~~---------keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE 71 (234)
.|||+|.+++++ |+|++|||+|||||+.||+||.+|++||++||||++||||||||+|. +..+|++++||
T Consensus 9 nIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~~~~eei~YE 88 (249)
T 1lfp_A 9 QIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFEEVIYE 88 (249)
T ss_dssp CSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCcccceEEEEEE
Confidence 356666666554 99999999999999999999999999999999999999999999986 45579999999
Q ss_pred EEecCCcEEEEEEecCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCC
Q 026745 72 VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP 151 (234)
Q Consensus 72 ~~gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~ 151 (234)
|||||||+|||||||||+|||+++||++|+|+||+|+++|||+|+|+|+|+|.+..+..++|++||.|||+||+||++.
T Consensus 89 gyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~mF~~kG~i~~~~~~~~ed~~le~aleaGAeDv~~e- 167 (249)
T 1lfp_A 89 GYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPG- 167 (249)
T ss_dssp EEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHHHTCSEEECC-
T ss_pred EECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEEcCCCCCHHHHHHHHHhcCCceeecC-
Confidence 9999999999999999999999999999999999999999999999999999998655789999999999999999631
Q ss_pred CCCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCccccc-CHHHHHHHHHHHHHHccCCCcceee
Q 026745 152 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEV-DDEAMELNKELIAKLLELDDVDAVY 230 (234)
Q Consensus 152 ~~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l-~~e~~~~~~~li~~Lee~dDV~~Vy 230 (234)
++.|+|+|+|++|.+|+++|++.||++.+ +++.|+|+++|+| ++++.+++.+|+++|+++||||+||
T Consensus 168 -----------~~~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~~e~~~~~~klid~Led~DDVq~Vy 235 (249)
T 1lfp_A 168 -----------EEVHIIYTVPEELYEVKENLEKLGVPIEK-AQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVI 235 (249)
T ss_dssp -----------SSEEEEEECGGGHHHHHHHHHTTTCCCSE-EEEEEEESSCEECCCHHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred -----------CceEEEEECHHHHHHHHHHHHHcCCCeee-eeeEECCCCceecCCHHHHHHHHHHHHHHhcccChhhhh
Confidence 25799999999999999999999999986 5999999999999 8999999999999999999999999
Q ss_pred cc
Q 026745 231 TD 232 (234)
Q Consensus 231 ~N 232 (234)
||
T Consensus 236 ~N 237 (249)
T 1lfp_A 236 AN 237 (249)
T ss_dssp EC
T ss_pred cC
Confidence 99
No 3
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=100.00 E-value=3.6e-77 Score=519.14 Aligned_cols=218 Identities=28% Similarity=0.415 Sum_probs=195.6
Q ss_pred cchhhhhhcchh---------hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEE
Q 026745 2 QRKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEV 72 (234)
Q Consensus 2 ~~~~s~~~~~~~---------keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~ 72 (234)
.|||+|.+++++ |+|++|||+|||||+.||+||.+|++||++||||++||||||||+|. ..+|++++|||
T Consensus 7 nIkh~K~~~Dakr~k~ftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~g~-~~~~eei~YEg 85 (240)
T 1mw7_A 7 YRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSK-EGNLSEITYEG 85 (240)
T ss_dssp --------------CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTST-TCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC-CCCeEEEEEEE
Confidence 366777666554 99999999999999999999999999999999999999999999987 66799999999
Q ss_pred EecCCcEEEEEEecCCchhhHHHHHHHHhhcC-ccccCCcceeeecceeEEEEEeC----C-CCCHHHHHHHHHHCCCcc
Q 026745 73 YGYGGVSIVVEVLTDKITRSVAAVREVVKDCG-GKMADPGSVMFKFRRARVVNIKF----T-DADKDQLLDIALDAGAED 146 (234)
Q Consensus 73 ~gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~g-g~l~~~gsv~~~F~~~g~i~~~~----~-~~~~d~~~e~AIE~GAeD 146 (234)
||||||+|||||||||+|||+++||++|+|+| |+|+++|||+|+|+|+|+|.+.. . +.++|++||.|||+||+|
T Consensus 86 yGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~ed~~le~aleaGAeD 165 (240)
T 1mw7_A 86 KANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEE 165 (240)
T ss_dssp EETTTEEEEEEEEESCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHGGGTEEE
T ss_pred ECCCceEEEEEEecCCHHHHHHHHHHHHhhcCCeeeCCCCcchhhheeeeEEEEecCccccCCCCHHHHHHHHHHCCCce
Confidence 99999999999999999999999999999999 99999999999999999999975 2 368999999999999999
Q ss_pred cccCCCCCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCc
Q 026745 147 VIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDV 226 (234)
Q Consensus 147 v~~~~~~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV 226 (234)
|++ + ++.|+|+|+|++|.+|+++|++.||++.+ +++.|+|+++|+|++++.+++.+|+++|+++|||
T Consensus 166 v~~---------e---~~~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~Led~DDV 232 (240)
T 1mw7_A 166 LEE---------V---EDKIIIRGDYNSFKLLNEGFESLKLPILK-ASLQRIATTPIELNDEQMELTEKLLDRIEDDDDV 232 (240)
T ss_dssp EEE---------E---TTEEEEEEEGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCBCCCHHHHHHHHHHHHHHHTSTTE
T ss_pred eec---------C---CceEEEEECHHHHHHHHHHHHHcCCCeee-eeeEeCCCCCcccCHHHHHHHHHHHHHHhcccCc
Confidence 963 1 24799999999999999999999999986 5999999999999999999999999999999999
Q ss_pred ceeeccC
Q 026745 227 DAVYTDQ 233 (234)
Q Consensus 227 ~~Vy~N~ 233 (234)
|+||||-
T Consensus 233 q~Vy~N~ 239 (240)
T 1mw7_A 233 VALYTNI 239 (240)
T ss_dssp EEEEESB
T ss_pred chhhcCC
Confidence 9999993
No 4
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=100.00 E-value=7.2e-77 Score=519.33 Aligned_cols=217 Identities=29% Similarity=0.499 Sum_probs=193.3
Q ss_pred cchhhhhhcchh---------hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccC-CccceeEEEEE
Q 026745 2 QRKQSCIRGWGR---------KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEAFIEKVYE 71 (234)
Q Consensus 2 ~~~~s~~~~~~~---------keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~-~~~~~~~~~yE 71 (234)
.|||+|.+++++ |+|++|||+|||||+.||+||.+|++||++||||++||||||||+|. +..+|++++||
T Consensus 12 nIkh~K~~~Dakr~kiftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~~~~eei~YE 91 (249)
T 1kon_A 12 NTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYE 91 (249)
T ss_dssp GTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC------CCCEEEEEE
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCcccCeEEEEEE
Confidence 356666666554 99999999999999999999999999999999999999999999986 45579999999
Q ss_pred EEecCCcEEEEEEecCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCC
Q 026745 72 VYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP 151 (234)
Q Consensus 72 ~~gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~ 151 (234)
|||||||+|||||||||+|||+++||++|+|+||+|+++|||+|+|+|+|+|.+.. + ++|++||.|||+||+||+..
T Consensus 92 gyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~~F~~kG~i~~~~-~-~ed~~le~aleaGAeDv~~~- 168 (249)
T 1kon_A 92 GYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEK-G-DEDTIMEAALEAGAEDVVTY- 168 (249)
T ss_dssp EEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESS-S-CHHHHHHHHHHHTCSEEEEC-
T ss_pred EECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEECC-C-CHHHHHHHHHhCCCceeeec-
Confidence 99999999999999999999999999999999999999999999999999999975 3 89999999999999999731
Q ss_pred CCCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCcceeec
Q 026745 152 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231 (234)
Q Consensus 152 ~~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~ 231 (234)
+ ++.|+|+|+|++|.+|+++|++.||++.+ +++.|+|+++|+|++++.+++.+|+++|+++||||+|||
T Consensus 169 -------e---~~~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~Led~DDVq~Vy~ 237 (249)
T 1kon_A 169 -------D---DGAIDVYTAWEEMGKVRDALEAAGLKADS-AEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYH 237 (249)
T ss_dssp -------T---TSCEEEEEEGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCCCCCTTTSHHHHHHHHHHHHSSSEEEEEE
T ss_pred -------C---CceEEEEECHHHHHHHHHHHHHcCCCeee-eeeEECCCCceecCHHHHHHHHHHHHHHhcccChhhhhc
Confidence 1 24699999999999999999999999986 599999999999999999999999999999999999999
Q ss_pred c
Q 026745 232 D 232 (234)
Q Consensus 232 N 232 (234)
|
T Consensus 238 N 238 (249)
T 1kon_A 238 N 238 (249)
T ss_dssp C
T ss_pred C
Confidence 9
No 5
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=78.77 E-value=1.8 Score=31.78 Aligned_cols=67 Identities=22% Similarity=0.248 Sum_probs=45.2
Q ss_pred ceEEEEeccccHHHHHHHHHHC-CCCeeecccceeecCcccccCHHHHHHHHHHHHHHccCCCccee---ecc
Q 026745 164 RYYKVVSTSDNYTDITTKLREA-GIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAV---YTD 232 (234)
Q Consensus 164 ~~~~~~~~p~~~~~v~~~L~~~-g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li~~Lee~dDV~~V---y~N 232 (234)
..+.|-|.|..+.+|..+|.+. |.++....+..+ +--|.+..+....+.+++++++.+|.|..+ |++
T Consensus 8 sslvV~~~p~~~~~V~~~L~~ipgvEi~~~~~~~G--kiVV~iEa~~~~~l~~~i~~I~~i~GVlst~lvy~~ 78 (95)
T 2jsx_A 8 CSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSG--QLIVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQ 78 (95)
T ss_dssp EEEEEEECTTSHHHHHHHHTTSTTEEEEEEETTTT--EEEEEEEESSHHHHHHHHHHHTTSTTEEEEEESSCC
T ss_pred EEEEEEECCCCHHHHHHHHHCCCCeEEEEecCCCC--CEEEEEEeCCHHHHHHHHHHHhcCCCccEEeEEEEE
Confidence 3577899999999999999984 544421101111 123555555556667788999999998774 654
No 6
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=68.95 E-value=6.7 Score=26.68 Aligned_cols=57 Identities=18% Similarity=0.042 Sum_probs=38.2
Q ss_pred ccccHHHHHHHHHHCCCCeeecccceeecC---c--ccccCHHHHHHHHHHHHHHccCCCcceee
Q 026745 171 TSDNYTDITTKLREAGIPFETDNGSELLPI---T--TIEVDDEAMELNKELIAKLLELDDVDAVY 230 (234)
Q Consensus 171 ~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~---~--~V~l~~e~~~~~~~li~~Lee~dDV~~Vy 230 (234)
.|--+.++...|.+.|+.|... ....... - .+++.+ .+.+..++++|++.++|..|+
T Consensus 15 r~G~L~~I~~~la~~~inI~~i-~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~~V~~v~ 76 (88)
T 2ko1_A 15 KNGMTNQITGVISKFDTNIRTI-VLNAKDGIFTCNLMIFVKN--TDKLTTLMDKLRKVQGVFTVE 76 (88)
T ss_dssp CTTHHHHHHHHHTTSSSCEEEE-EEEECSSEEEEEEEEEESS--HHHHHHHHHHHTTCTTEEEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEE-EEEEcCCEEEEEEEEEECC--HHHHHHHHHHHhcCCCceEEE
Confidence 4566899999999999998632 2211111 1 123332 345678999999999999885
No 7
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=64.60 E-value=5.7 Score=28.88 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=44.2
Q ss_pred EEEEeccccHHHHHHHH----HHCCCCeeecccceeecCccccc------CHHHHHHHHHHHHHHccCCCcceeecc
Q 026745 166 YKVVSTSDNYTDITTKL----REAGIPFETDNGSELLPITTIEV------DDEAMELNKELIAKLLELDDVDAVYTD 232 (234)
Q Consensus 166 ~~~~~~p~~~~~v~~~L----~~~g~~i~~~~~~~~iP~~~V~l------~~e~~~~~~~li~~Lee~dDV~~Vy~N 232 (234)
+.|+|.+.+-..|+..| ...+|.+..- ...-++...|+| +..+-..++.++..|.-.|.|..++.+
T Consensus 11 v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l-~s~~~~~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~W~ 86 (94)
T 2lqj_A 11 VRVICRPKAETYVRAHIVQRTSSNDITLRGI-RTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWY 86 (94)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHTEEEEEE-EEEECSSSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhcCCCceeEe-eeecCCCCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEEEE
Confidence 55799999988888765 4568877532 222222333433 112334567899999999999999986
No 8
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=59.08 E-value=16 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred eEEEEeccccHHHHHHHHHHCCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
.++.+..|..+..|+++|.+.|+.
T Consensus 3 ~I~AIIrp~kl~~vk~AL~~~G~~ 26 (116)
T 4aff_A 3 KIEAIIRPFKLDEVKIALVNAGIV 26 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999998775
No 9
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=50.74 E-value=22 Score=28.36 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=41.0
Q ss_pred eccccHHHHHHHHHHCCCCeeecccceeec--C-ccc--ccCHHHHHHHHHHHHHHccCCCcceeec
Q 026745 170 STSDNYTDITTKLREAGIPFETDNGSELLP--I-TTI--EVDDEAMELNKELIAKLLELDDVDAVYT 231 (234)
Q Consensus 170 ~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP--~-~~V--~l~~e~~~~~~~li~~Lee~dDV~~Vy~ 231 (234)
=.|--|+.|...|...||+|.+- .+.... . ..+ .++ .+...++.++..|..+.||.+|+.
T Consensus 12 NrpGvLarIt~lfs~rg~NI~Sl-~v~~t~d~~~sriti~V~-~d~~~leqI~kqL~Kl~dV~~V~r 76 (164)
T 2f1f_A 12 NESGALSRVIGLFSQRGYNIESL-TVAPTDDPTLSRMTIQTV-GDEKVLEQIEKQLHKLVDVLRVSE 76 (164)
T ss_dssp CCTTHHHHHHHHHHTTTCCCSEE-EEEECSCSSEEEEEEEEE-SCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCCeeec-eeeecCCCCEEEEEEEEe-ccHHHHHHHHHHHcCCCCEEEEEE
Confidence 46777999999999999998632 222111 1 112 333 223557789999999999999975
No 10
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=48.40 E-value=9.2 Score=26.09 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=30.6
Q ss_pred eEEEEeccccHHHHHHHHHHCCCCeeecccceeecC--cccccCHHHHH
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI--TTIEVDDEAME 211 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~--~~V~l~~e~~~ 211 (234)
.|.+.|+...++.|...|++.|+.+.. ..|--. -.+.++.++.+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~---~~Y~~~V~l~v~vp~~~~~ 54 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIIN---SDVQAFVLLRVALPAAKVA 54 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEE---EEEEEEEEEEEEECC-CC-
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEc---ccccCeEEEEEEECHHHHH
Confidence 488999999999999999999998863 455333 23444554433
No 11
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=47.16 E-value=13 Score=26.17 Aligned_cols=28 Identities=7% Similarity=0.286 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccCC
Q 026745 34 AAVLEKAKELDVPKDIVERNIKRASEKG 61 (234)
Q Consensus 34 ~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~ 61 (234)
.+|.+-||+.|+||..|.|+|-+=+.++
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG 57 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKED 57 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5688899999999999999998765444
No 12
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=46.11 E-value=17 Score=24.84 Aligned_cols=27 Identities=11% Similarity=0.443 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHhhcCc--cccCCcceeee
Q 026745 90 TRSVAAVREVVKDCGG--KMADPGSVMFK 116 (234)
Q Consensus 90 nRt~~~vr~~~~K~gg--~l~~~gsv~~~ 116 (234)
.-+.+.|+++||.-+| +|+++|.+.|.
T Consensus 23 qlcl~SiqTafNQGaGt~sLs~SG~isf~ 51 (73)
T 1p65_A 23 QLCLSSIQTAFNQGAGTCTLSDSGRISYT 51 (73)
T ss_dssp HHHHHHHHHHHHHTCSEEEECTTSCEEEE
T ss_pred HHHHHHHHHHHhCCCceEEeccCCceeEE
Confidence 3478999999999876 78888887775
No 13
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=44.70 E-value=27 Score=27.84 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=41.0
Q ss_pred eccccHHHHHHHHHHCCCCeeecccceee--cC-ccc--ccCHHHHHHHHHHHHHHccCCCcceeec
Q 026745 170 STSDNYTDITTKLREAGIPFETDNGSELL--PI-TTI--EVDDEAMELNKELIAKLLELDDVDAVYT 231 (234)
Q Consensus 170 ~~p~~~~~v~~~L~~~g~~i~~~~~~~~i--P~-~~V--~l~~e~~~~~~~li~~Lee~dDV~~Vy~ 231 (234)
=.|--|+.|...|...||+|.+- .+... |. ..+ .++. +...++.+...|..+.||.+|+.
T Consensus 13 NrpGvL~rI~~lfs~rg~NI~Sl-~v~~t~d~g~sritivV~~-d~~~leql~kQL~Kl~dV~~V~~ 77 (165)
T 2pc6_A 13 NEAGALSRVAGLFSARGYNIESL-SVAPTEDPTLSRMTLVTNG-PDEIVEQITKQLNKLIEVVKLID 77 (165)
T ss_dssp CSTTHHHHHHHHHHHHTCCCCEE-EEEECSSTTEEEEEEEEEE-CHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCcEEEE-EEEecCCCCEEEEEEEEec-cHHHHHHHHHHhcCCCCEEEEEE
Confidence 46778999999999999998632 22111 11 112 2332 23557789999999999999975
No 14
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=39.05 E-value=30 Score=31.35 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCCchhhHHHHH
Q 026745 33 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVR 97 (234)
Q Consensus 33 L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~g-PgGvaiIVe~~TdN~nRt~~~vr 97 (234)
...|+..|...++|.+.|.++|+...+-.. ++|..+ .+|+.+|.++---|+.-+..-++
T Consensus 283 alaAia~a~~lgi~~~~i~~~L~~f~~~~g------R~e~v~~~~g~~vi~D~~a~np~a~~~al~ 342 (451)
T 3lk7_A 283 ALATIAVAKLAGISNQVIRETLSNFGGVKH------RLQSLGKVHGISFYNDSKSTNILATQKALS 342 (451)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHCCCCTT------SSEEEEEETTEEEEECTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------cEEEEeeeCCcEEEEeCCCCCHHHHHHHHH
Confidence 446677888999999999999998654322 223332 47888888875556665555544
No 15
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=38.27 E-value=30 Score=26.02 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEeccccHHHHHHHHHHCCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
.++.+..|..+..|+++|.+.|+.
T Consensus 3 ~I~AIIrp~kl~~Vk~AL~~~G~~ 26 (119)
T 3ncq_A 3 KIEAIVRAEKFPEVKAALEERGFY 26 (119)
T ss_dssp EEEEEECTTTHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999998875
No 16
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=38.00 E-value=24 Score=26.07 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.4
Q ss_pred eEEEEeccccHHHHHHHHHHCCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
.++.+..|..+..|+++|.+.|+.
T Consensus 3 ~I~aIIr~~kl~~vk~AL~~~G~~ 26 (112)
T 3mhy_A 3 LVMAIIKPFKLDEVREALTSLGIQ 26 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999998775
No 17
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=37.02 E-value=41 Score=30.46 Aligned_cols=62 Identities=8% Similarity=0.051 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEEecCCcEEEEEEecCCchhhHHHHHHH
Q 026745 33 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREV 99 (234)
Q Consensus 33 L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~gPgGvaiIVe~~TdN~nRt~~~vr~~ 99 (234)
+..|+..|...++|.+.|.++|+...+-.. -++ ... .++|+.+|.++.--|+.-+..-++++
T Consensus 286 alaA~a~~~~lgi~~~~i~~~L~~~~~~~g-R~e-~~~---~~~~~~vidDsyahnp~s~~~~l~~l 347 (452)
T 1gg4_A 286 ALAAAALSMSVGATLDAIKAGLANLKAVPG-RLF-PIQ---LAENQLLLDDSYNANVGSMTAAVQVL 347 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTTCCCCTT-SSE-EEE---EETTEEEEECCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC-Cce-EEE---CCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 456777888999999999999997643221 122 211 23578888888877877666666654
No 18
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=36.90 E-value=21 Score=25.03 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=30.1
Q ss_pred hhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 026745 14 KSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59 (234)
Q Consensus 14 keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~ 59 (234)
++|..+.+..||.-. .++-+-|++.|||+.+|.++|++=..
T Consensus 13 ~~IL~~L~~~~pg~~-----~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 13 QRILKFLEELGEGKA-----TTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHCTTCC-----BCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-----cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567777887553211 34667788999999999999998654
No 19
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=36.18 E-value=49 Score=24.36 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=41.2
Q ss_pred eEEEEeccccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHH-HHHccCCCcceeecc
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELI-AKLLELDDVDAVYTD 232 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li-~~Lee~dDV~~Vy~N 232 (234)
.+.+.+++..+..+...|.+..- +.....+..-..-.+.+...+++.+..|+ +.|...++|..+.+.
T Consensus 67 ~v~~~~~~~~~~~~~~~l~~~~~-v~~~~~~~G~~d~~~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t~ 134 (141)
T 1i1g_A 67 ITGVDTKPEKLFEVAEKLKEYDF-VKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCPA 134 (141)
T ss_dssp EEEEEECGGGHHHHHHHHHHSTT-EEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred EEEEEECchhHHHHHHHHhcCCC-eEEEEEecCCCCEEEEEEECCHHHHHHHHHHHhhcCCCEeEEEEE
Confidence 45567788999999999988632 22111111111112333333455577788 899999999887664
No 20
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=35.69 E-value=30 Score=26.08 Aligned_cols=50 Identities=6% Similarity=0.084 Sum_probs=33.6
Q ss_pred ceEEEEeccccHHHHHHHHHHCCCCeeecccc-ee--ecCccccc--CHHHHHHH
Q 026745 164 RYYKVVSTSDNYTDITTKLREAGIPFETDNGS-EL--LPITTIEV--DDEAMELN 213 (234)
Q Consensus 164 ~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~-~~--iP~~~V~l--~~e~~~~~ 213 (234)
+.+.-+..|.++..|+++|.+.||.....+.. .| ..++.+++ ++++.+.+
T Consensus 7 KlI~AIIrp~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~v 61 (114)
T 3m05_A 7 KLVIAIVQDKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEV 61 (114)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHH
Confidence 45777899999999999999999985432222 22 23466665 56655443
No 21
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=35.35 E-value=24 Score=31.85 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCCchhhHHHHHH
Q 026745 33 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVRE 98 (234)
Q Consensus 33 L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~g-PgGvaiIVe~~TdN~nRt~~~vr~ 98 (234)
...|+..|...++|.+.|.++|+..++-.. ++|..+ .+|+.+|.++.--|+.-+..-++.
T Consensus 272 alaA~a~~~~lgi~~~~i~~~L~~f~~~~g------R~e~~~~~~~~~vi~Ds~a~np~a~~~al~~ 332 (439)
T 2x5o_A 272 ALAALALADAAGLPRASSLKALTTFTGLPH------RFEVVLEHNGVRWINDSKATNVGSTEAALNG 332 (439)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCCCCTT------SSEEEEEETTEEEEECTTCCSHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------ceEEEEEECCEEEEEeCCCCCHHHHHHHHHh
Confidence 456777888899999999999997654222 222222 357878878755666655555543
No 22
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=35.19 E-value=34 Score=25.68 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.5
Q ss_pred eEEEEeccccHHHHHHHHHHCCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
.++.+..|..+..|+++|.+.|+.
T Consensus 3 ~I~AIIrp~kl~~Vk~AL~~~G~~ 26 (118)
T 3t9z_A 3 MVVAVIRPEKLECVKKALEERGFV 26 (118)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCc
Confidence 467899999999999999998885
No 23
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=35.03 E-value=62 Score=21.80 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=41.0
Q ss_pred eEEEEeccccHHHHHHHHHHCCCCeeecccceeecCc-ccccCHHHHHHHHHHHH-HHccCCCcceeecc
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT-TIEVDDEAMELNKELIA-KLLELDDVDAVYTD 232 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~-~V~l~~e~~~~~~~li~-~Lee~dDV~~Vy~N 232 (234)
++.+.++|.....+.++|.+.. ++.. +....=+.+ .+.+--.+++.+..|+. .|..+|.|.++.+.
T Consensus 5 ~v~v~~~~~~~~~~~~~l~~~p-eV~e-~~~vtG~~D~ll~v~~~d~~~l~~~i~~~l~~~~gV~~~~T~ 72 (83)
T 2cvi_A 5 FILMVTAAGKEREVMEKLLAMP-EVKE-AYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTM 72 (83)
T ss_dssp EEEEEECTTCHHHHHHHHHTST-TEEE-EEECBSSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHhCCC-CeeE-EEEEcccCCEEEEEEECCHHHHHHHHHHHhccCCCEeEEEEE
Confidence 5678899999999999998752 2321 110000111 22332233555677886 89999999998764
No 24
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=34.63 E-value=35 Score=24.86 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=21.2
Q ss_pred eEEEEeccccHHHHHHHHHHCCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
.+..++.|..+..|+++|.+.|+.
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 1hwu_A 3 QVTAIIKPFKLDEVRESLAEVGVT 26 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999998774
No 25
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=33.94 E-value=62 Score=30.00 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCCchhhHHHHHHH
Q 026745 33 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVREV 99 (234)
Q Consensus 33 L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~g-PgGvaiIVe~~TdN~nRt~~~vr~~ 99 (234)
...|+..|...++|.+.|.++|+..++-.. ++|..+ .+|+.+|++.- -|+.-..+-++.+
T Consensus 347 alaA~a~~~~lgi~~~~i~~~L~~~~~~~g------R~e~~~~~~g~~vi~D~a-hnp~~~~a~l~~l 407 (524)
T 3hn7_A 347 ALVAIAAAYNIGVSVKTACAALSAFAGIKR------RMELIGDVNDILVFDDFA-HHPTAITTTLDGA 407 (524)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTCCCBTT------SSEEEEEETTEEEEEECC-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCc------eEEEEEecCCcEEEEECC-CCHHHHHHHHHHH
Confidence 446677888999999999999997654222 222332 47899999995 6766555555443
No 26
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=33.85 E-value=37 Score=25.05 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.0
Q ss_pred ceEEEEeccccHHHHHHHHHHCCCC
Q 026745 164 RYYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 164 ~~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
..+.+++.|..+..|+++|.+.|+.
T Consensus 6 k~I~aIIr~~~~~~v~~AL~~~G~~ 30 (116)
T 2ns1_B 6 KLVTVIIKPFKLEDVREALSSIGIQ 30 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 3577899999999999999998774
No 27
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=33.79 E-value=37 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.7
Q ss_pred ceEEEEeccccHHHHHHHHHHCCCC
Q 026745 164 RYYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 164 ~~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
..+.+++.|..+..|+++|.+.|+.
T Consensus 4 k~I~aIIr~~~~~~v~~aL~~~G~~ 28 (114)
T 3bzq_A 4 KLITAIVKPFTLDDVKTSLEDAGVL 28 (114)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 3577899999999999999998774
No 28
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=33.24 E-value=38 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.2
Q ss_pred eEEEEeccccHHHHHHHHHHCCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
.+..++.|..+..|+++|.+.|+.
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 2eg2_A 3 KIEAIIKPFKLDEVKDALVEIGIG 26 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999998774
No 29
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=32.93 E-value=1.8e+02 Score=22.88 Aligned_cols=134 Identities=10% Similarity=0.071 Sum_probs=72.7
Q ss_pred EEEEecCCchhhHHHHHHHHhhcCccccCCcceeee--cceeE-EEEEeCCCCCHHHHHHHHHH-CCCcccccCCCCCCC
Q 026745 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK--FRRAR-VVNIKFTDADKDQLLDIALD-AGAEDVIEPPVNEDD 156 (234)
Q Consensus 81 IVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~--F~~~g-~i~~~~~~~~~d~~~e~AIE-~GAeDv~~~~~~ed~ 156 (234)
.+.++.+|+...+++|-.+|++.|.++. +-++... +.... .+.+..+....++++...-. .++-+|.... ++
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~-Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~---~~ 80 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIE-SLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELG---QG 80 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCS-EEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGG---GS
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCee-eceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcC---Cc
Confidence 5677889999999999999999999874 1222211 11111 12343221112333333222 3444444320 00
Q ss_pred CccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecC-cccccCHHHHHHHHHHHHHHccCC
Q 026745 157 TDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI-TTIEVDDEAMELNKELIAKLLELD 224 (234)
Q Consensus 157 ~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~-~~V~l~~e~~~~~~~li~~Lee~d 224 (234)
+--..+--.+.|-|++.+-..+....+-+.-.+... -|. -.++++... +++..|++.|+..-
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv-----~~~~~~ie~tg~~-~ki~~~~~~l~~~g 143 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDV-----TPSLYTVQLAGTS-GKLDAFLASIRDVA 143 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEE-----CSSEEEEEEEECH-HHHHHHHHHHTTTS
T ss_pred ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEE-----CCCEEEEEEeCCH-HHHHHHHHHHHhcC
Confidence 000122245778888876666777666665555422 244 357775432 55678888887654
No 30
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=32.50 E-value=97 Score=25.82 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=36.4
Q ss_pred ceEEEEeccccHHHHHHHHHHCCCCeeecccceeecCc--ccccCHHHHHHHHHHHHH
Q 026745 164 RYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT--TIEVDDEAMELNKELIAK 219 (234)
Q Consensus 164 ~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~--~V~l~~e~~~~~~~li~~ 219 (234)
..+.|.|+...+..|...|++.++.+.. ..|-..- .+.++.++.+.+...+..
T Consensus 140 ~~~~i~~~Y~~~~~v~~~l~~~~~~i~~---~~y~~~V~~~l~v~~~~~~~~~~~l~~ 194 (217)
T 1vi7_A 140 TEYTLQCEYHQLTGIEALLGQCDGKIIN---SDYQAFVLLRVALPAAKVAEFSAKLAD 194 (217)
T ss_dssp EEEEEEECTTTHHHHHHHHHHTTCEEEE---EEESSSEEEEEEECSSTHHHHHHHHHH
T ss_pred eEEEEEEccchHHHHHHHHHHCCCEEEc---eEecCCEEEEEEECHHHHHHHHHHHHH
Confidence 4688999999999999999999998863 4564331 344555555554444433
No 31
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=32.28 E-value=87 Score=28.63 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCCchhhHHHHHHH
Q 026745 33 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVREV 99 (234)
Q Consensus 33 L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~g-PgGvaiIVe~~TdN~nRt~~~vr~~ 99 (234)
+..|+..|...++|.+.|.++|+...+-.. ++|.+. .+|+.+|++ .--|+.-...-++.+
T Consensus 311 alaAia~~~~lGi~~~~i~~~L~~~~~~~g------R~e~v~~~~~~~vi~D-yahnP~s~~a~l~~l 371 (498)
T 1e8c_A 311 LLLALATLLALGYPLADLLKTAARLQPVCG------RMEVFTAPGKPTVVVD-YAHTPDALEKALQAA 371 (498)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHGGGCCCCTT------SSEEECCTTSCEEEEE-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------ceEEEEcCCCCEEEEE-CCCCHHHHHHHHHHH
Confidence 456777888899999999999997654222 333343 357899999 677776665555544
No 32
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=32.06 E-value=75 Score=20.89 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 026745 26 NPTSNTVLAAVLEKAKELDVPKDIVERNIKRA 57 (234)
Q Consensus 26 DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~ 57 (234)
.++.....-..|.+||+.||+.+-|..-+..-
T Consensus 8 ~~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~ 39 (57)
T 1b0n_B 8 HFELDQEWVELMVEAKEANISPEEIRKYLLLN 39 (57)
T ss_dssp -CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45667788899999999999999999998854
No 33
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=31.71 E-value=22 Score=26.34 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHccCCCccee
Q 026745 209 AMELNKELIAKLLELDDVDAV 229 (234)
Q Consensus 209 ~~~~~~~li~~Lee~dDV~~V 229 (234)
+...+.+|+.-|++..|||+|
T Consensus 14 eAAaFRrL~~HL~~r~DVQNI 34 (104)
T 3fyb_A 14 EAAAFRHLLRHLDEHKDVQNI 34 (104)
T ss_dssp HHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHHHHHHHHHHHhCcchhHH
Confidence 456889999999999999987
No 34
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=31.65 E-value=30 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.4
Q ss_pred eEEEEeccccHHHHHHHHHHCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGI 187 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~ 187 (234)
.++.+..|..+..|+++|.+.|+
T Consensus 5 kI~AIIrp~kl~~Vk~AL~~~G~ 27 (115)
T 3l7p_A 5 KIEAIIRSDKLEDLKAALVQSGF 27 (115)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHTC
T ss_pred EEEEEECHHHHHHHHHHHHHCCC
Confidence 57789999999999999999998
No 35
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=31.62 E-value=42 Score=24.58 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.2
Q ss_pred eEEEEeccccHHHHHHHHHHCCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
.+.+++.|..+..|+++|.+.|+.
T Consensus 5 ~I~aII~~~~~~~v~~aL~~~G~~ 28 (114)
T 2gw8_A 5 KIEAIVKPFKLDDVREALTEIGIT 28 (114)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 577899999999999999998774
No 36
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=31.36 E-value=33 Score=25.47 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.0
Q ss_pred ceEEEEeccccHHHHHHHHHHCCC
Q 026745 164 RYYKVVSTSDNYTDITTKLREAGI 187 (234)
Q Consensus 164 ~~~~~~~~p~~~~~v~~~L~~~g~ 187 (234)
+.+++++.|..+..|+++|.+.|+
T Consensus 7 KkIeaIi~p~kl~~V~~aL~~~Gv 30 (111)
T 3dfe_A 7 NKLVIVTEKVLLKKVAKIIEEAGA 30 (111)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHTC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCC
Confidence 568899999999999999998643
No 37
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.24 E-value=48 Score=24.99 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=36.0
Q ss_pred ecCCcEEEEEEecCCchhhHHHHHHHHhhcCccccCCcceeeec-ceeEEEEEeC
Q 026745 74 GYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKF-RRARVVNIKF 127 (234)
Q Consensus 74 gPgGvaiIVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F-~~~g~i~~~~ 127 (234)
.|-|+.|.|.-+.++. =+..+|+.+|+++| .+ ..|.|.. ...|+|.++.
T Consensus 15 ~~~G~il~v~~l~~~~-~sredLke~F~~~G-~V---~~Vd~~~g~~tgfVrf~~ 64 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQ-TCREDLHILFSNHG-EI---KWIDFVRGAKEGIILFKE 64 (121)
T ss_dssp CCCCCEEEEEESCCSS-CCHHHHHHHTCSSC-CE---EEEECCTTCSEEEEEESS
T ss_pred ccCCeEEEEecCCCCc-CCHHHHHHHHHhcC-CE---EEEEEecCCCEEEEEECC
Confidence 5789999999998882 25899999999976 22 2455555 3568888863
No 38
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=30.08 E-value=46 Score=24.65 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.3
Q ss_pred eEEEEeccccHHHHHHHHHHCCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
.+.+++.|..+..|+++|.+.|+.
T Consensus 5 ~I~aII~~~~~~~v~~aL~~~G~~ 28 (119)
T 2j9c_A 5 KVEAIIRPEKLEIVKKALSDAGYV 28 (119)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 467899999999999999998774
No 39
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=29.75 E-value=47 Score=24.35 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=21.3
Q ss_pred eEEEEeccccHHHHHHHHHHCCCC
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
.+.+++.|..+..|+++|.+.|+.
T Consensus 3 ~I~aII~~~~~~~V~~aL~~~G~~ 26 (116)
T 1vfj_A 3 LIVAIVRPEKLNEVLKALFQAEVR 26 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHhCCCC
Confidence 467899999999999999998774
No 40
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=29.55 E-value=42 Score=23.74 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=35.5
Q ss_pred hhhhHHHHhhCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCcc-ceeEEEEEEEe
Q 026745 13 RKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQE-AFIEKVYEVYG 74 (234)
Q Consensus 13 ~keI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~-~~~~~~yE~~g 74 (234)
...|.-+.|..|. |- .+-+-|++.|+||..++.||++=...+.- +-..|.|+.-+
T Consensus 21 eekVLe~LkeaG~-Pl------kageIae~~GvdKKeVdKaik~LKkEgkI~SPkRCyw~~~~ 76 (80)
T 2lnb_A 21 EQRILQVLTEAGS-PV------KLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLGG 76 (80)
T ss_dssp HHHHHHHHHHHTS-CE------EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEETTEEEESS
T ss_pred HHHHHHHHHHcCC-CC------CHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCCCceeeCCC
Confidence 3567777776543 31 24567889999999999999976533321 11336776643
No 41
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.52 E-value=43 Score=22.90 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=29.2
Q ss_pred hhhHHHHhhCCC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 026745 14 KSYLRNVKKGGP-NPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59 (234)
Q Consensus 14 keI~~Avk~GG~-DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkr~~~ 59 (234)
+.|..+.+..|+ ++ .++-+-|++.|||+.+|.+.|++=..
T Consensus 17 ~~IL~~L~~~~~~~~------~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 17 QRILKFLEELGEGKA------TTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHCSSSC------EEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC------cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567777776552 32 24567788999999999999997643
No 42
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=29.50 E-value=89 Score=25.58 Aligned_cols=134 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred EEEEecCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCc--ccccCCCCCC--C
Q 026745 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAE--DVIEPPVNED--D 156 (234)
Q Consensus 81 IVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAe--Dv~~~~~~ed--~ 156 (234)
.+.++.+|+...++.|-.+|++.|-++-.-....-.=...-.+.+...+. |..++.....+-. ||.......+ .
T Consensus 31 ~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL~KLidVikV~dl~~~~~ 108 (193)
T 2fgc_A 31 LVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQAYKLVEVVKVTPIDPLPE 108 (193)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHHTTSTTEEEEEECCSSGG
T ss_pred EEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHhcCcCceEEEEEecCCCC
Q ss_pred CccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecC-cccccCHHHHHHHHHHHHHHccC
Q 026745 157 TDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI-TTIEVDDEAMELNKELIAKLLEL 223 (234)
Q Consensus 157 ~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~-~~V~l~~e~~~~~~~li~~Lee~ 223 (234)
+--..+--.+.|-|++. -..+....+-+.-.+...+ |. -.++++... +++..|++.|+..
T Consensus 109 ~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~-----~~s~~iE~tG~~-~ki~a~i~~l~~~ 169 (193)
T 2fgc_A 109 NRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVS-----REGAIIEITGAR-SKVEAFINLLPQK 169 (193)
T ss_dssp GEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEEC-----SSEEEEEEEECH-HHHHHHHHHSCGG
T ss_pred ccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEc-----CCEEEEEEcCCH-HHHHHHHHHhhhh
No 43
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=27.95 E-value=29 Score=19.15 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=15.3
Q ss_pred CCCCCCHHHHHHHHHHHHc
Q 026745 25 PNPTSNTVLAAVLEKAKEL 43 (234)
Q Consensus 25 ~DP~~N~~L~~ai~~Ak~~ 43 (234)
++|..|.-|-.+|.+|.-.
T Consensus 5 ~e~~~~~gleaiirkalmg 23 (26)
T 2ovm_B 5 ADPASNLGLEDIIRKALMG 23 (26)
T ss_pred CCCccccCHHHHHHHHHhh
Confidence 5778899999999988643
No 44
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.22 E-value=1.8e+02 Score=21.06 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=44.6
Q ss_pred EEEecCCcEEEEEEecC-------CchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCC
Q 026745 71 EVYGYGGVSIVVEVLTD-------KITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG 143 (234)
Q Consensus 71 E~~gPgGvaiIVe~~Td-------N~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~G 143 (234)
.-+||.+--++|-.+.+ ...-.+..|...|..+| .+ -.+.|-.++ +.|++.. .+....||+..
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~V---ilvr~v~d~-~fVtF~d-----~~sAl~AI~ld 78 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TI---VLVRINQGQ-MLVTFAD-----SHSALSVLDVD 78 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CC---SEEEEETTE-EEEECSC-----SHHHHHHHHGG
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CE---EEEEEecCc-EEEEEcC-----hHHHHHHHhcC
Confidence 36899999999999864 34456788999999988 33 357766555 7666632 23345667644
Q ss_pred Cccc
Q 026745 144 AEDV 147 (234)
Q Consensus 144 AeDv 147 (234)
--+|
T Consensus 79 G~~v 82 (95)
T 1ufw_A 79 GMKV 82 (95)
T ss_dssp GSEE
T ss_pred Ceee
Confidence 4443
No 45
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=26.83 E-value=27 Score=25.93 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHccCCCccee
Q 026745 209 AMELNKELIAKLLELDDVDAV 229 (234)
Q Consensus 209 ~~~~~~~li~~Lee~dDV~~V 229 (234)
+...+.+|+.-|.+..|||+|
T Consensus 15 eAAaFRRLv~HL~~r~DVQNI 35 (105)
T 2o35_A 15 EAAVFRRLLEHLRERSDVQNI 35 (105)
T ss_dssp HHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHHHhCcchhHH
Confidence 456889999999999999987
No 46
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=26.58 E-value=1.8e+02 Score=22.87 Aligned_cols=129 Identities=11% Similarity=0.058 Sum_probs=71.1
Q ss_pred EEEEecCCchhhHHHHHHHHhhcCccccCCcceeee--cceeEE-EEEeCCCCCHHHHHHHHHH-----CCCcccccCCC
Q 026745 81 VVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFK--FRRARV-VNIKFTDADKDQLLDIALD-----AGAEDVIEPPV 152 (234)
Q Consensus 81 IVe~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~--F~~~g~-i~~~~~~~~~d~~~e~AIE-----~GAeDv~~~~~ 152 (234)
.+.++.+|+...+++|-.+|+++|.++- +-++... +....+ |.+..+ +..++..+. .++-+|....
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~-Sl~v~~t~d~g~sritivV~~d----~~~leql~kQL~Kl~dV~~V~~~~- 79 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIE-SLSVAPTEDPTLSRMTLVTNGP----DEIVEQITKQLNKLIEVVKLIDLS- 79 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCC-EEEEEECSSTTEEEEEEEEEEC----HHHHHHHHHHHHHSTTEEEEEEGG-
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEE-EEEEEecCCCCEEEEEEEEecc----HHHHHHHHHHhcCCCCEEEEEEcC-
Confidence 5677889999999999999999999774 1222211 221112 234322 333333332 2444443220
Q ss_pred CCCCCccccCCceEEEEeccccHHHHHHHHHHCCCCeeecccceeecC-cccccCHHHHHHHHHHHHHHccC
Q 026745 153 NEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPI-TTIEVDDEAMELNKELIAKLLEL 223 (234)
Q Consensus 153 ~ed~~~ed~~~~~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~-~~V~l~~e~~~~~~~li~~Lee~ 223 (234)
+++--..+--.+.|-|++.+-..+....+-+.-.+.. .-|. -.++++... +++..|++.|+..
T Consensus 80 --~~~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivd-----v~~~~~~ie~tg~~-~ki~~~~~~l~~~ 143 (165)
T 2pc6_A 80 --SEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIID-----VTNELYTIELTGTR-SKLDGFLQAVDCN 143 (165)
T ss_dssp --GSCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEE-----EETTEEEEEEEECH-HHHHHHHHHSCGG
T ss_pred --CcceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEE-----EcCCEEEEEEcCCH-HHHHHHHHHhhhc
Confidence 0000112224577888887666677766666555532 2244 357775432 5567788888754
No 47
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=26.28 E-value=88 Score=28.12 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEEe-cCCcEEEEEEecCCchhhHHHHHHH
Q 026745 33 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYG-YGGVSIVVEVLTDKITRSVAAVREV 99 (234)
Q Consensus 33 L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~g-PgGvaiIVe~~TdN~nRt~~~vr~~ 99 (234)
+..|+..|...++|.+.|.++|+...+-.. ++|.++ ++|+.+|-++.--|+.-+..-++++
T Consensus 278 alaA~a~~~~lgi~~~~i~~~L~~~~~~~g------R~e~~~~~~~~~iiDDsyahnp~s~~~~l~~l 339 (454)
T 2am1_A 278 AMIASYVALQEGVSEEQIRLAFQHLELTRN------RTEWKKAANGADILSDVYNANPTAMKLILETF 339 (454)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHGGGCCCCCC------CSCEECCTTTCEEEEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCccC------CeeEEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456777888899999999999997654221 333333 3567766666767777666666554
No 48
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=25.72 E-value=95 Score=20.44 Aligned_cols=64 Identities=11% Similarity=0.246 Sum_probs=39.8
Q ss_pred eEEEEeccccHHHHHHHHHHCCCCeeecccceee--cCc-ccccCHHHHHHHHHHHH-HHccCCCcceeecc
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELL--PIT-TIEVDDEAMELNKELIA-KLLELDDVDAVYTD 232 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~i--P~~-~V~l~~e~~~~~~~li~-~Lee~dDV~~Vy~N 232 (234)
.+.+.|+|.....+.++|.+.. ++.. .-.+ +.+ .+.+--.+++.+..|+. .|..+|.|.++.+.
T Consensus 5 ~v~v~~~~~~~~~~~~~l~~~p-eV~~---~~~vtG~~d~l~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t~ 72 (83)
T 2zbc_A 5 IVLINTDAGGEDEVFERLKSMS-EVTE---VHVVYGVYDIVVKVEADSMDKLKDFVTNTIRKLPKVRSTLTM 72 (83)
T ss_dssp EEEEEESTTCHHHHHHHHTTCT-TEEE---EEECSSSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHhCCC-CeEE---EEEEeccCCEEEEEEECCHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 5678899999999999998642 3321 1111 112 12222223455667775 89999999987664
No 49
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=25.29 E-value=1.3e+02 Score=27.18 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEE--e-cCCcEEEEEEecCCchhhHHHHHH
Q 026745 33 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY--G-YGGVSIVVEVLTDKITRSVAAVRE 98 (234)
Q Consensus 33 L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~--g-PgGvaiIVe~~TdN~nRt~~~vr~ 98 (234)
...|+..|...++|.+.|.++|+...+-.. ++|.. + .+|+.+|.+ .--|+.-..+-++.
T Consensus 282 alaAia~a~~lgi~~~~i~~~L~~f~g~~g------R~e~v~~~~~~g~~vi~D-~aHnp~~~~a~l~a 343 (469)
T 1j6u_A 282 ALAVIALFDSLGYDLAPVLEALEEFRGVHR------RFSIAFHDPETNIYVIDD-YAHTPDEIRNLLQT 343 (469)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCCCCTT------SSEEEEEETTTTEEEEEE-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC------CcEEEcccccCCcEEEEe-CCCCHHHHHHHHHH
Confidence 456777888899999999999998764322 33444 3 368889999 44455444444433
No 50
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=24.99 E-value=2.1e+02 Score=21.05 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=58.9
Q ss_pred EEEecCCchhhHHHHHHHHhhcCccccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCCcccccCCCCCCCCcccc
Q 026745 82 VEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDR 161 (234)
Q Consensus 82 Ve~~TdN~nRt~~~vr~~~~K~gg~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GAeDv~~~~~~ed~~~ed~ 161 (234)
+.+.-.|+...++.|-.+|.++|-++- .-++ ......|++.+.. .+.+.+.+..-+.|..-...
T Consensus 9 i~v~v~d~~G~l~~i~~~la~~~inI~-~i~~-~~~~~~~~~~~~~--~d~~~a~~~L~~~G~~v~~~------------ 72 (144)
T 2f06_A 9 LSIFLENKSGRLTEVTEVLAKENINLS-ALCI-AENADFGILRGIV--SDPDKAYKALKDNHFAVNIT------------ 72 (144)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCCEE-EEEE-EECSSCEEEEEEE--SCHHHHHHHHHHTTCCEEEE------------
T ss_pred EEEEecCCCcHHHHHHHHHHHCCCCEE-EEEE-EecCCCCEEEEEe--CCHHHHHHHHHHcCCeEeee------------
Confidence 344557888899999999999999873 1111 2233335544432 25666655544577754321
Q ss_pred CCceEEEEeccccHHHHHHHHHHCCCCee
Q 026745 162 AERYYKVVSTSDNYTDITTKLREAGIPFE 190 (234)
Q Consensus 162 ~~~~~~~~~~p~~~~~v~~~L~~~g~~i~ 190 (234)
.--.+.+.-.|--++++...|.+.|++|.
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~ 101 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIE 101 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEE
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEE
Confidence 00112345668889999999999999985
No 51
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=24.62 E-value=99 Score=28.00 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEE-EecCCcEEEEEEecCCchhhHHHHH
Q 026745 33 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEV-YGYGGVSIVVEVLTDKITRSVAAVR 97 (234)
Q Consensus 33 L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~-~gPgGvaiIVe~~TdN~nRt~~~vr 97 (234)
...|+..|...++|.+.|.++|+...+-.. -++ ...+. .+.+|+.+|++ .-.|+.-..+-++
T Consensus 296 alaAia~~~~lgi~~~~i~~~L~~f~~~~g-R~e-~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~ 358 (475)
T 1p3d_A 296 ATAALAVAKEEGIANEAILEALADFQGAGR-RFD-QLGEFIRPNGKVRLVDD-YGHHPTEVGVTIK 358 (475)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTCCCBTT-SSE-EEEEEEETTEEEEEEEE-CCCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC-CCE-EEecccccCCCcEEEEe-CCCCHHHHHHHHH
Confidence 456777888899999999999997654221 122 22111 11136788998 5445544433333
No 52
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.25 E-value=55 Score=18.71 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=18.1
Q ss_pred HHHHHcCCCHHHHHHHHHHhc
Q 026745 38 EKAKELDVPKDIVERNIKRAS 58 (234)
Q Consensus 38 ~~Ak~~nmPk~~Ie~AIkr~~ 58 (234)
+-|+..||+..+|.+.+++..
T Consensus 26 ~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 26 EMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp HHHHHHTCCHHHHHHHHHCST
T ss_pred HHHHHHCcCHHHHHHHHhhHH
Confidence 558899999999999998764
No 53
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.20 E-value=95 Score=24.18 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=39.9
Q ss_pred eEEEEeccccHHHHHHHHHHCCCCeeecccceeecCc-ccccCHHHHHHHHHHHHHHccCCCcceeecc
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT-TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~-~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N 232 (234)
++.+.++|..+..+...|.+.. ++.....+.. +-+ .+.+--.+++.+..|++.|..++.|..+.+.
T Consensus 90 ~v~v~~~~~~~~~v~~~l~~~p-eV~~~~~vtG-~~d~l~~v~~~d~~~l~~~l~~l~~~~gV~~~~t~ 156 (171)
T 2e1c_A 90 FILVKVKAGKYSEVASNLAKYP-EIVEVYETTG-DYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTM 156 (171)
T ss_dssp EEEEEECTTCHHHHHHHHHTST-TEEEEEECSS-SSSEEEEEEESSHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred EEEEEECcchHHHHHHHHhcCc-CeEEEEEeeC-CCCEEEEEEECCHHHHHHHHHHHhcCCCcceEEEE
Confidence 4556788999999999998753 2321101100 112 2233222345566778999999999887664
No 54
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=24.18 E-value=1.3e+02 Score=27.40 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccCCccceeEEEEEEE-e-c---CC-cEEEEEEecCCchhhHHHHHH
Q 026745 33 LAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVY-G-Y---GG-VSIVVEVLTDKITRSVAAVRE 98 (234)
Q Consensus 33 L~~ai~~Ak~~nmPk~~Ie~AIkr~~~~~~~~~~~~~yE~~-g-P---gG-vaiIVe~~TdN~nRt~~~vr~ 98 (234)
...|+..|...++|.+.|.++|+...+-.. -+ +...+.- + + +| +.+|++ .-.|+.-..+-++.
T Consensus 297 alaAia~a~~lgi~~~~i~~~L~~f~~~~g-R~-e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~a 365 (491)
T 2f00_A 297 AAAAVAVATEEGIDDEAILRALESFQGTGR-RF-DFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKA 365 (491)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHTCCCBTT-SS-EEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCC-CC-EEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHHH
Confidence 456777788899999999999997654221 12 2221110 0 0 36 889999 55565544444443
No 55
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=24.16 E-value=66 Score=24.60 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=22.3
Q ss_pred ceEEEEeccccHHHHHHHHHHCCCC
Q 026745 164 RYYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 164 ~~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
..++.++.|..+..|+++|.+.|+.
T Consensus 14 K~I~AIIr~~k~~~V~~AL~~~G~~ 38 (135)
T 2o66_A 14 YKVEAIVRPWRIQQVSSALLKIGIR 38 (135)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCc
Confidence 4688899999999999999998774
No 56
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=22.19 E-value=1e+02 Score=23.67 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=20.7
Q ss_pred HHHHHHHHhccCCccceeEEEEEEEecCCcEEEEEEec
Q 026745 49 IVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLT 86 (234)
Q Consensus 49 ~Ie~AIkr~~~~~~~~~~~~~yE~~gPgGvaiIVe~~T 86 (234)
.|++++..+....+.......+--++|+||..++=...
T Consensus 26 ~l~~~l~~aa~~~gatvl~~~~h~F~P~GvSgvvllaE 63 (135)
T 2iii_A 26 DIRELLEGAVKYANLTKISSHYYQFQPHGATGVVLLAE 63 (135)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEECSSSCEEEEEEEC-
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEcCCCCeEEEEEecc
Confidence 35555555543322233445555668999888765443
No 57
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=22.18 E-value=2e+02 Score=21.14 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCCeeecccceeecC-cccccC-HHHHHHHHHHHHHHccCCCcceeecc
Q 026745 177 DITTKLREAGIPFETDNGSELLPI-TTIEVD-DEAMELNKELIAKLLELDDVDAVYTD 232 (234)
Q Consensus 177 ~v~~~L~~~g~~i~~~~~~~~iP~-~~V~l~-~e~~~~~~~li~~Lee~dDV~~Vy~N 232 (234)
++.+.|++.|+++... |. |.++=+ ++-++.+.++.+.+. .++.+||++
T Consensus 37 ~~i~vi~~sGL~y~~~------pmgT~IEGe~devm~vvk~~~e~~~--~g~~RV~t~ 86 (106)
T 1vk8_A 37 RAIEKISSWGMKYEVG------PSNTTVEGEFEEIMDRVKELARYLE--QFAKRFVLQ 86 (106)
T ss_dssp HHHHHHHTTCSCEEEC------SSCEEEEECHHHHHHHHHHHHHHHT--TTCSEEEEE
T ss_pred HHHHHHHHcCCCeEeC------CCccEEEcCHHHHHHHHHHHHHHHH--cCCCEEEEE
Confidence 4555566777766432 53 667755 345778888888887 678888765
No 58
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.13 E-value=1.3e+02 Score=22.45 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=39.6
Q ss_pred eEEEEeccccHHHHHHHHHHCCCCeeecccceeecCc-ccccCHHHHHHHHHHHHHHccCCCcceeecc
Q 026745 165 YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPIT-TIEVDDEAMELNKELIAKLLELDDVDAVYTD 232 (234)
Q Consensus 165 ~~~~~~~p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~-~V~l~~e~~~~~~~li~~Lee~dDV~~Vy~N 232 (234)
.+.+-+++..+..+.+.|.+.. ++.....+.. +-+ .+.+--.+++.+..|++.|..++.|..+.+.
T Consensus 70 ~v~v~~~~~~~~~~~~~l~~~p-~V~~~~~~tG-~~d~~~~v~~~d~~~l~~~~~~l~~~~gV~~~~t~ 136 (151)
T 2cyy_A 70 FILVKVKAGKYSEVASNLAKYP-EIVEVYETTG-DYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTM 136 (151)
T ss_dssp EEEEEECTTCHHHHHHHHHTCT-TEEEEEECSS-SSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEEECcccHHHHHHHHhcCC-CeeEeeEecC-CCCEEEEEEECCHHHHHHHHHHHhCCCCEeEEEEE
Confidence 4556788999999999998753 2321101100 112 2223222344566777999999999887654
No 59
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=22.09 E-value=1.2e+02 Score=21.51 Aligned_cols=59 Identities=8% Similarity=0.255 Sum_probs=38.0
Q ss_pred EEEEecCCchhhHHHHHHHHhhcCc----cccCCcceeeecceeEEEEEeCCCCCHHHHHHHHHHCCC
Q 026745 81 VVEVLTDKITRSVAAVREVVKDCGG----KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGA 144 (234)
Q Consensus 81 IVe~~TdN~nRt~~~vr~~~~K~gg----~l~~~gsv~~~F~~~g~i~~~~~~~~~d~~~e~AIE~GA 144 (234)
+|-++-+|+..+...|+.+|.++|+ +|| +.|-=+..|+|.+.-. .+.|.+-...=+.|.
T Consensus 9 vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmG----iP~~~~~~~iIsl~v~-~~~d~I~aL~gkLg~ 71 (86)
T 2nzc_A 9 ILTIVVEDREKAYRQVNELLHNFSEDILLRVG----YPVREENMAIIFLVLK-TDNDTIGALSGKLGQ 71 (86)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTGGGEEEEEE----EEEGGGTEEEEEEEEE-ECHHHHHHHHHHHHT
T ss_pred EEEEEEeCchhhHHHHHHHHHhccCEEEEEcC----CCcCcCCceEEEEEEE-CCHHHHHHHHHHhCC
Confidence 4556677888888899999999996 554 3333356777766432 234555444444443
No 60
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=21.27 E-value=1e+02 Score=22.89 Aligned_cols=67 Identities=10% Similarity=-0.046 Sum_probs=39.6
Q ss_pred eEEEEec--cccHHHHHHHHHHCCCCeeecccceeecCcccccCHHHHHHHHHHH-HHHccCCCcceeecc
Q 026745 165 YYKVVST--SDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELI-AKLLELDDVDAVYTD 232 (234)
Q Consensus 165 ~~~~~~~--p~~~~~v~~~L~~~g~~i~~~~~~~~iP~~~V~l~~e~~~~~~~li-~~Lee~dDV~~Vy~N 232 (234)
.+.+.++ +..+..+...|.+.. ++.....+.--..-.+.+...+++.+..++ +.|..++.|.++.+.
T Consensus 66 ~v~v~~~~~~~~~~~~~~~l~~~p-~V~~~~~~tG~~d~~~~v~~~d~~~l~~~l~~~l~~~~gV~~~~t~ 135 (150)
T 2pn6_A 66 ITSVKAKYGKNYHVELGNKLAQIP-GVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQ 135 (150)
T ss_dssp EEEEEECCCTTHHHHHHHHHHTST-TEEEEEECSSSCSEEEEEEESSHHHHHHHTHHHHTTCTTEEEEEEE
T ss_pred EEEEEecCChhHHHHHHHHHhcCc-hhhhhhhhcCcCCEEEEEEECCHHHHHHHHHHHhccCCCeeEEEEE
Confidence 3445566 678899999998742 222110110001122344344566677888 899999999887664
No 61
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=21.01 E-value=78 Score=23.62 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=21.6
Q ss_pred ceEEEEeccccHHHHHHHHHHCCCC
Q 026745 164 RYYKVVSTSDNYTDITTKLREAGIP 188 (234)
Q Consensus 164 ~~~~~~~~p~~~~~v~~~L~~~g~~ 188 (234)
..+++++.|..+..|.++|.+.|+.
T Consensus 26 K~I~aIIr~~k~e~V~~aL~~~Gi~ 50 (119)
T 2cz4_A 26 KLVTIVAESLLEKRLVEEVKRLGAK 50 (119)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHhCCCC
Confidence 3578899999999999999997664
No 62
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=20.66 E-value=69 Score=21.01 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=18.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHhc
Q 026745 37 LEKAKELDVPKDIVERNIKRAS 58 (234)
Q Consensus 37 i~~Ak~~nmPk~~Ie~AIkr~~ 58 (234)
=+-|+..|+|+.+|.+.|+.=.
T Consensus 29 ~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 29 FQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHH
Confidence 3567899999999999999643
No 63
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=20.07 E-value=57 Score=24.67 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.4
Q ss_pred HHHHHcCCCHHHHHHHHHHhc
Q 026745 38 EKAKELDVPKDIVERNIKRAS 58 (234)
Q Consensus 38 ~~Ak~~nmPk~~Ie~AIkr~~ 58 (234)
.-|++.+.+.+.+||||..|-
T Consensus 53 ~IA~k~~TT~s~VEraIR~aI 73 (120)
T 1fc3_A 53 DIAKKYNTTASRVERAIRHAI 73 (120)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHH
Confidence 348999999999999999874
Done!