RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026745
(234 letters)
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 132 bits (332), Expect = 1e-38
Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 15/213 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEA-FIEKVYEVYGYGGV 78
K GG +P +N L A ++KA ++ +D + R I R +A +YE YG GG
Sbjct: 34 AKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGT 93
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+I++E L+D R+VA VR CGG + GSV + ++ I F D+D +++
Sbjct: 94 AIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSV--AYLFSKKGVISFEKGDEDTIMEA 151
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
AL+AGA V D V + + + L AG+ ++ ++
Sbjct: 152 ALEAGA-----EDVVTYDDG------AIDVYTAWEEMGKVRDALEAAGLKADSA-EVSMI 199
Query: 199 PITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
P T ++D E LI L + DDV VY
Sbjct: 200 PSTKADMDAETAPKLMRLIDMLEDCDDVQEVYH 232
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus
[TaxId: 63363]}
Length = 243
Score = 111 bits (278), Expect = 1e-30
Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 15/214 (7%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKV-YEVYGYGGV 78
+ GGPNP N L +E+AK+ ++P + +ER IK+ + + + E+V YE Y GGV
Sbjct: 32 TRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGV 91
Query: 79 SIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
+++V TD R+ + VR V GG + G V + F R + + + +++LL+
Sbjct: 92 AVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEK 151
Query: 139 ALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELL 198
A++ D E + + + + ++ L + G+P E
Sbjct: 152 AIEV------------GAEDVQPGEEVHIIYTVPEELYEVKENLEKLGVPIEKA-QITWK 198
Query: 199 PITTIEVDD-EAMELNKELIAKLLELDDVDAVYT 231
PI+T++++D E + +L+ L ELDDV V
Sbjct: 199 PISTVQINDEETAQKVIKLLNALEELDDVQQVIA 232
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter
pylori [TaxId: 210]}
Length = 220
Score = 107 bits (269), Expect = 1e-29
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVS 79
K GG P +N L + AK ++PKD ++ IKRAS K E YE GV
Sbjct: 14 AKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVL 72
Query: 80 IVVEVLTDKITRSVAAVREVVKDC-GGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDI 138
I++E +TD TR++A ++ G + GS+ F F R V + + +L
Sbjct: 73 IIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLE 132
Query: 139 ALDAGAEDV-IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
L+ D +E +D R + + + +P +
Sbjct: 133 DLEFALIDYGLEELEEVEDKIIIRGDYNS--------FKLLNEGFESLKLPILKA-SLQR 183
Query: 198 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYT 231
+ T IE++DE MEL ++L+ ++ + DDV A+YT
Sbjct: 184 IATTPIELNDEQMELTEKLLDRIEDDDDVVALYT 217
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 29.2 bits (64), Expect = 0.39
Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 152 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAME 211
++E+ E+ + +++ ++ + G + EV E
Sbjct: 335 IDEERITENLQKALPYILTE-----FHMNRMIKEGASRA--EAYKKAK----EVKALTFE 383
Query: 212 LNKELIAKLLE 222
K + +L+E
Sbjct: 384 YQKWPVERLIE 394
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 29.0 bits (64), Expect = 0.56
Identities = 17/163 (10%), Positives = 39/163 (23%), Gaps = 26/163 (15%)
Query: 58 SEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVM--- 114
SE+ + + + ++ + + + D M D +
Sbjct: 229 SERTDLQTVTLLAKNIVANKECEFKRIVAINVPKWTNLMH---LDTWLTMLDKDKFLYSP 285
Query: 115 --------FKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYY 166
+ + + L + + + P+ + + ER
Sbjct: 286 IANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQSIINKKPVLIPIAGEGASQMEIERET 345
Query: 167 ------------KVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
VV L AGI +G++L
Sbjct: 346 HFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQL 388
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 234
Score = 27.5 bits (60), Expect = 1.3
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 6 SCIRGWGRKSYLRNVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASE 59
+ +++ +V+ G + S L A VPK++++R ++ E
Sbjct: 182 DALEHGDTIAFMHSVQDGAAS-KSYG-----LAVAALAGVPKEVIKRARQKLRE 229
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 27.2 bits (59), Expect = 1.9
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 27 PTSNTVLAAVLEKAKELDVPKDIV 50
++ + +A ++ A+EL + V
Sbjct: 306 GSAGSTVAVAVKAAQELQEGQRCV 329
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 26.8 bits (58), Expect = 2.0
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 129 DADKDQLLDIALDAGAEDVIEPPVNEDDTDE--DRAERYYKVVSTSDNYTD 177
D+D ++ A DAG ++ N ++ + A +Y ST+ +
Sbjct: 14 AKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPH 64
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 87
Score = 25.3 bits (55), Expect = 3.2
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 92 SVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP 151
+V V E + + + V ++ D Q L L GA + PP
Sbjct: 24 TVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83
Query: 152 V 152
V
Sbjct: 84 V 84
>d1hbnb1 a.89.1.1 (B:189-443) Beta chain {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 255
Score = 25.9 bits (57), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPK 47
VK G T +V+A ++E+A E V K
Sbjct: 68 VKANGKEGTVGSVIADLVERALEDGVIK 95
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 26.3 bits (57), Expect = 3.9
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 46 PKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIV---VEVLTDKITRSVAAVREVVKD 102
P ++E + E + +E++ +VY GV + +E++ ++ + V V D
Sbjct: 1331 PHQLLE---AKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYV-----EVTD 1382
Query: 103 CGGKMADPGSVM--FKFRRAR 121
G G V+ +
Sbjct: 1383 PGDSRLLEGQVLEKWDVEALN 1403
>d1e6yb1 a.89.1.1 (B:2186-2433) Beta chain {Archaeon
Methanosarcina barkeri [TaxId: 2208]}
Length = 248
Score = 25.9 bits (57), Expect = 4.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 20 VKKGGPNPTSNTVLAAVLEKAKELDVPK 47
VK+ G + T TV+ +V+ +A E +
Sbjct: 68 VKENGKDGTIGTVIESVVRRAIEAGIIS 95
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 26.0 bits (56), Expect = 4.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 27 PTSNTVLAAVLEKAKELDVPKDIV 50
+S ++ A L+ A+EL K +
Sbjct: 262 MSSGGIVWAALQVARELGPGKRVA 285
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 25.4 bits (54), Expect = 5.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 36 VLEKAKELDVPKDIVER 52
V + EL +P D++ R
Sbjct: 177 VRKIGLELGLPYDMLYR 193
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 25.5 bits (55), Expect = 6.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 27 PTSNTVLAAVLEKAKELDVPKDIV 50
+S +AA L+ A++L +V
Sbjct: 256 ISSGANVAAALKVAQKLGPDARVV 279
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 25.5 bits (55), Expect = 7.3
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 106 KMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDA-GAEDVIEPPVNEDDTDEDRAER 164
++ ++ L++ ++ G + + + +R +
Sbjct: 291 EVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQW 350
Query: 165 YY---------KVVSTSDNYTDITTKLREAGIPFETDNGSEL 197
VV D T T LR+AG+ T + SEL
Sbjct: 351 DDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASEL 392
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 134
Score = 24.6 bits (53), Expect = 8.5
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 118 RRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDD 156
R R + + + + + G + V+ PV+ D+
Sbjct: 80 RHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDN 118
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter
crescentus [TaxId: 155892]}
Length = 148
Score = 24.3 bits (52), Expect = 9.2
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 49 IVERNIKRASEKGQEAFIEKVYEVYG 74
++ N+ RA+ K F + +++G
Sbjct: 122 MLAANVDRAAGKLIACFEARAQQLHG 147
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 24.3 bits (52), Expect = 9.7
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 7/127 (5%)
Query: 28 TSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTD 87
T+NT L + K ++ P I + K + G +I
Sbjct: 9 TANT-LVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEA----KNMIGKTPATIKAIRPMR 63
Query: 88 KITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDV 147
+ V V+ A G +FK R V I TD ++ +LD L+AGA V
Sbjct: 64 DGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKV 123
Query: 148 --IEPPV 152
IE P+
Sbjct: 124 FLIEEPM 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.368
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 874,918
Number of extensions: 42430
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 41
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)