BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026746
         (234 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen
          Length = 529

 Score = 30.4 bits (67), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 70  AKMEHPELDSERGHRHVINXXXXXXXXXQNYLALHSILPPGTKNDKNSIVKTTANMIHEL 129
           A + HP+LD   G  H ++         + YL      P GTK+D   I      MIH+ 
Sbjct: 219 AMIAHPKLDPATGELHALSYDVIK----RPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDF 274


>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
 pdb|3LZC|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
 pdb|3LZD|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
           4fe-4s Cluster
 pdb|3LZD|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
           4fe-4s Cluster
          Length = 378

 Score = 27.3 bits (59), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 112 KNDKNSIVKTTANMIHELQCCKQELERKNYELESNLG 148
           K  +  IV TTA  IH+L+  K+ LE + +E+    G
Sbjct: 150 KLGRKIIVTTTAQHIHQLKEAKEFLESEGFEVSIGRG 186


>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
 pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
          Length = 687

 Score = 27.3 bits (59), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 159 NVDNPTSGVDSMLEVLKCLKDLG 181
           N+D P  G+D+M++V  C +++G
Sbjct: 207 NLDAPEGGLDAMMQVAACPEEIG 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,099,945
Number of Sequences: 62578
Number of extensions: 208447
Number of successful extensions: 513
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 7
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)