Query 026746
Match_columns 234
No_of_seqs 210 out of 783
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:06:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 2.2E-13 4.7E-18 94.9 5.7 54 80-133 3-59 (60)
2 smart00353 HLH helix loop heli 99.4 4.4E-13 9.6E-18 91.7 6.0 48 87-134 2-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.4 6.7E-13 1.5E-17 92.0 5.2 49 82-130 2-55 (55)
4 KOG1318 Helix loop helix trans 98.5 2.5E-07 5.4E-12 88.0 7.0 54 81-134 233-290 (411)
5 KOG1319 bHLHZip transcription 98.4 9.9E-07 2.1E-11 76.1 7.1 58 81-138 62-126 (229)
6 KOG0561 bHLH transcription fac 98.3 2.9E-07 6.4E-12 84.2 3.5 61 87-147 66-128 (373)
7 KOG4304 Transcriptional repres 98.2 9.8E-07 2.1E-11 79.3 3.6 55 80-134 31-93 (250)
8 cd04897 ACT_ACR_3 ACT domain-c 97.9 0.0001 2.2E-09 54.9 8.9 67 157-225 3-74 (75)
9 KOG3561 Aryl-hydrocarbon recep 97.8 1.9E-05 4.2E-10 80.6 5.0 53 80-132 19-75 (803)
10 KOG2483 Upstream transcription 97.8 6.6E-05 1.4E-09 66.9 7.7 62 77-138 55-119 (232)
11 cd04927 ACT_ACR-like_2 Second 97.7 0.00032 6.9E-09 51.6 8.9 68 156-225 1-73 (76)
12 cd04895 ACT_ACR_1 ACT domain-c 97.6 0.00041 8.8E-09 51.3 8.2 61 157-219 3-68 (72)
13 cd04896 ACT_ACR-like_3 ACT dom 97.6 0.0006 1.3E-08 50.8 8.6 65 157-224 2-73 (75)
14 cd04925 ACT_ACR_2 ACT domain-c 97.3 0.0025 5.3E-08 46.5 9.1 65 157-223 2-72 (74)
15 cd04900 ACT_UUR-like_1 ACT dom 97.3 0.0043 9.4E-08 44.8 10.1 48 156-205 2-51 (73)
16 PF13740 ACT_6: ACT domain; PD 97.2 0.003 6.5E-08 46.2 8.6 67 155-226 2-69 (76)
17 cd04899 ACT_ACR-UUR-like_2 C-t 97.2 0.0028 6.1E-08 44.5 8.2 64 157-222 2-69 (70)
18 KOG3960 Myogenic helix-loop-he 97.2 0.001 2.2E-08 60.0 6.7 66 78-143 115-182 (284)
19 cd04872 ACT_1ZPV ACT domain pr 97.0 0.0046 9.9E-08 46.2 7.9 66 156-225 2-69 (88)
20 cd04869 ACT_GcvR_2 ACT domains 97.0 0.0099 2.2E-07 43.0 9.5 65 158-226 2-73 (81)
21 PRK00194 hypothetical protein; 97.0 0.0057 1.2E-07 45.6 8.3 67 155-225 3-71 (90)
22 cd04875 ACT_F4HF-DF N-terminal 96.9 0.014 3E-07 42.0 9.6 64 158-225 2-69 (74)
23 cd04893 ACT_GcvR_1 ACT domains 96.9 0.013 2.8E-07 42.9 9.3 65 156-225 2-67 (77)
24 PF01842 ACT: ACT domain; Int 96.8 0.0051 1.1E-07 42.2 6.3 61 157-223 2-65 (66)
25 KOG4029 Transcription factor H 96.6 0.0021 4.5E-08 56.6 3.9 58 80-137 108-169 (228)
26 cd04870 ACT_PSP_1 CT domains f 96.6 0.026 5.6E-07 40.9 8.8 65 157-225 1-66 (75)
27 PF13291 ACT_4: ACT domain; PD 96.5 0.012 2.7E-07 42.8 6.8 50 153-204 4-56 (80)
28 cd04926 ACT_ACR_4 C-terminal 96.5 0.033 7.1E-07 40.2 8.9 45 156-202 2-47 (72)
29 cd04873 ACT_UUR-ACR-like ACT d 96.4 0.038 8.3E-07 38.2 8.4 46 157-204 2-48 (70)
30 KOG2588 Predicted DNA-binding 96.2 0.0029 6.3E-08 65.6 2.8 59 80-138 275-334 (953)
31 cd04928 ACT_TyrKc Uncharacteri 96.1 0.087 1.9E-06 38.5 9.4 62 157-222 3-66 (68)
32 cd04886 ACT_ThrD-II-like C-ter 96.0 0.064 1.4E-06 36.8 7.8 45 158-204 1-51 (73)
33 cd04888 ACT_PheB-BS C-terminal 95.9 0.052 1.1E-06 38.5 7.3 62 156-221 1-65 (76)
34 PLN03217 transcription factor 95.8 0.027 5.8E-07 43.1 5.7 54 93-146 19-78 (93)
35 cd04887 ACT_MalLac-Enz ACT_Mal 95.8 0.072 1.6E-06 37.7 7.8 61 158-222 2-64 (74)
36 PRK05007 PII uridylyl-transfer 95.2 0.087 1.9E-06 55.1 9.0 71 152-224 805-879 (884)
37 PRK06027 purU formyltetrahydro 94.7 0.36 7.8E-06 44.2 10.4 69 154-226 5-77 (286)
38 PRK13011 formyltetrahydrofolat 94.5 0.36 7.8E-06 44.2 10.2 68 155-226 7-77 (286)
39 PRK05092 PII uridylyl-transfer 94.5 0.21 4.6E-06 52.4 9.7 71 152-224 840-915 (931)
40 PRK04435 hypothetical protein; 94.5 0.27 5.8E-06 40.7 8.4 66 152-221 66-134 (147)
41 PRK04374 PII uridylyl-transfer 94.2 0.28 6E-06 51.4 9.7 69 153-223 794-866 (869)
42 cd04876 ACT_RelA-SpoT ACT dom 94.2 0.27 6E-06 32.1 6.6 59 158-220 1-61 (71)
43 PRK00275 glnD PII uridylyl-tra 94.2 0.27 5.8E-06 51.6 9.5 73 152-226 811-888 (895)
44 TIGR00655 PurU formyltetrahydr 93.9 0.56 1.2E-05 42.9 10.0 65 157-225 2-71 (280)
45 cd02116 ACT ACT domains are co 93.7 0.65 1.4E-05 28.5 7.3 34 158-193 1-35 (60)
46 PRK03059 PII uridylyl-transfer 93.6 0.32 6.9E-06 50.8 8.9 69 153-223 784-854 (856)
47 PRK03381 PII uridylyl-transfer 93.6 0.44 9.5E-06 49.3 9.8 70 154-225 598-668 (774)
48 PRK01759 glnD PII uridylyl-tra 93.6 0.29 6.2E-06 51.1 8.5 70 152-223 780-853 (854)
49 TIGR01693 UTase_glnD [Protein- 93.4 0.34 7.5E-06 50.3 8.7 69 152-222 776-848 (850)
50 PRK03381 PII uridylyl-transfer 93.3 0.4 8.6E-06 49.6 8.9 50 155-206 707-757 (774)
51 cd04877 ACT_TyrR N-terminal AC 93.3 0.31 6.6E-06 35.0 5.9 43 157-204 2-45 (74)
52 cd04874 ACT_Af1403 N-terminal 93.3 0.78 1.7E-05 31.3 7.8 59 157-221 2-62 (72)
53 cd04880 ACT_AAAH-PDT-like ACT 92.6 1.2 2.5E-05 31.8 8.1 58 164-225 9-67 (75)
54 PRK13010 purU formyltetrahydro 92.4 0.91 2E-05 41.7 9.1 68 155-226 9-81 (289)
55 cd04905 ACT_CM-PDT C-terminal 92.2 1.7 3.7E-05 31.5 8.7 62 159-224 5-68 (80)
56 TIGR01693 UTase_glnD [Protein- 92.1 0.81 1.8E-05 47.6 9.3 70 154-225 667-742 (850)
57 cd04878 ACT_AHAS N-terminal AC 91.9 1.2 2.6E-05 30.1 7.2 38 158-197 3-43 (72)
58 cd04881 ACT_HSDH-Hom ACT_HSDH_ 91.8 0.98 2.1E-05 31.2 6.8 59 157-222 2-63 (79)
59 PRK08577 hypothetical protein; 91.5 1.6 3.5E-05 35.2 8.6 66 152-221 53-122 (136)
60 KOG4447 Transcription factor T 90.6 0.16 3.5E-06 42.9 2.0 51 81-131 78-130 (173)
61 cd04879 ACT_3PGDH-like ACT_3PG 90.5 1.7 3.7E-05 29.2 6.8 58 158-222 2-62 (71)
62 KOG3560 Aryl-hydrocarbon recep 90.4 0.23 4.9E-06 49.5 3.1 36 92-127 36-75 (712)
63 PRK01759 glnD PII uridylyl-tra 90.3 1.6 3.4E-05 45.7 9.3 69 154-224 676-749 (854)
64 cd04884 ACT_CBS C-terminal ACT 90.1 2.4 5.1E-05 29.9 7.5 60 158-221 2-65 (72)
65 PRK07334 threonine dehydratase 90.1 1.7 3.8E-05 41.2 8.7 51 152-204 323-379 (403)
66 PRK05007 PII uridylyl-transfer 90.0 1.8 4E-05 45.4 9.6 70 154-225 700-774 (884)
67 KOG3559 Transcriptional regula 89.5 0.36 7.8E-06 46.7 3.6 41 88-128 8-52 (598)
68 KOG3558 Hypoxia-inducible fact 89.3 0.3 6.5E-06 49.8 3.0 41 87-127 52-96 (768)
69 cd04904 ACT_AAAH ACT domain of 88.9 3.7 7.9E-05 29.6 7.8 58 164-227 10-68 (74)
70 cd04903 ACT_LSD C-terminal ACT 88.2 4 8.6E-05 27.5 7.3 32 158-191 2-34 (71)
71 cd04908 ACT_Bt0572_1 N-termina 87.9 5.8 0.00013 27.5 8.2 44 157-204 3-47 (66)
72 KOG3910 Helix loop helix trans 87.2 0.48 1E-05 46.7 2.9 58 78-135 523-584 (632)
73 cd04883 ACT_AcuB C-terminal AC 86.7 6.8 0.00015 27.1 8.0 59 156-221 2-63 (72)
74 cd04889 ACT_PDH-BS-like C-term 86.6 3 6.5E-05 27.8 5.9 37 159-197 2-40 (56)
75 cd04909 ACT_PDH-BS C-terminal 86.0 4.4 9.6E-05 28.0 6.7 33 157-191 3-36 (69)
76 PRK00275 glnD PII uridylyl-tra 85.8 4.1 8.9E-05 42.9 9.1 68 154-223 703-777 (895)
77 PRK03059 PII uridylyl-transfer 85.5 4.2 9E-05 42.7 8.9 69 154-224 677-750 (856)
78 PRK05092 PII uridylyl-transfer 85.5 4.9 0.00011 42.5 9.4 67 155-223 732-804 (931)
79 PRK11589 gcvR glycine cleavage 84.7 3.2 6.9E-05 35.9 6.4 66 154-224 7-73 (190)
80 cd04929 ACT_TPH ACT domain of 84.6 9.5 0.00021 27.9 8.1 61 164-230 10-71 (74)
81 cd04882 ACT_Bt0572_2 C-termina 84.4 5.6 0.00012 26.8 6.4 32 158-191 2-34 (65)
82 COG2844 GlnD UTP:GlnB (protein 83.4 4.1 9E-05 42.6 7.6 68 152-222 788-856 (867)
83 PRK04374 PII uridylyl-transfer 83.4 7 0.00015 41.2 9.5 69 155-225 690-761 (869)
84 PRK10872 relA (p)ppGpp synthet 82.5 5.4 0.00012 41.4 8.0 63 155-221 666-731 (743)
85 COG3830 ACT domain-containing 82.4 4.3 9.3E-05 31.4 5.6 65 155-223 3-69 (90)
86 COG4492 PheB ACT domain-contai 82.1 8.4 0.00018 32.1 7.5 67 152-222 69-138 (150)
87 KOG3898 Transcription factor N 82.1 0.83 1.8E-05 41.3 1.9 52 82-133 73-127 (254)
88 PRK11589 gcvR glycine cleavage 81.0 12 0.00027 32.3 8.6 70 155-226 95-169 (190)
89 cd04931 ACT_PAH ACT domain of 79.7 22 0.00048 27.0 8.8 63 156-223 15-79 (90)
90 PRK11899 prephenate dehydratas 79.7 12 0.00026 34.2 8.6 67 158-228 197-265 (279)
91 cd04885 ACT_ThrD-I Tandem C-te 78.6 12 0.00027 26.1 6.7 58 159-221 2-61 (68)
92 cd04894 ACT_ACR-like_1 ACT dom 77.3 19 0.00042 26.3 7.2 62 157-220 2-65 (69)
93 PRK11092 bifunctional (p)ppGpp 75.7 11 0.00024 38.9 7.8 62 155-220 626-689 (702)
94 TIGR00691 spoT_relA (p)ppGpp s 75.5 11 0.00025 38.6 7.9 48 155-204 610-659 (683)
95 cd04902 ACT_3PGDH-xct C-termin 75.4 13 0.00029 25.4 6.1 56 160-222 4-62 (73)
96 cd04922 ACT_AKi-HSDH-ThrA_2 AC 74.5 15 0.00032 24.7 6.0 44 157-204 3-50 (66)
97 COG0788 PurU Formyltetrahydrof 73.9 27 0.00058 32.3 9.0 67 155-225 7-77 (287)
98 cd04930 ACT_TH ACT domain of t 72.2 31 0.00067 27.4 8.1 64 156-227 44-109 (115)
99 cd04901 ACT_3PGDH C-terminal A 69.6 4.3 9.4E-05 27.8 2.4 42 160-203 4-46 (69)
100 TIGR01127 ilvA_1Cterm threonin 69.3 32 0.0007 32.1 8.8 66 152-221 302-373 (380)
101 KOG4395 Transcription factor A 69.2 7.4 0.00016 35.6 4.3 47 86-132 179-228 (285)
102 PF13710 ACT_5: ACT domain; PD 68.3 31 0.00068 24.2 6.6 53 164-221 2-56 (63)
103 TIGR00119 acolac_sm acetolacta 64.9 37 0.00081 28.5 7.5 61 158-223 4-67 (157)
104 CHL00100 ilvH acetohydroxyacid 64.4 46 0.00099 28.5 8.1 66 158-228 5-73 (174)
105 PRK06382 threonine dehydratase 64.2 42 0.0009 31.9 8.6 66 152-221 327-398 (406)
106 cd04932 ACT_AKiii-LysC-EC_1 AC 62.9 56 0.0012 23.7 8.7 65 156-228 2-70 (75)
107 cd04919 ACT_AK-Hom3_2 ACT doma 62.4 43 0.00092 22.6 6.3 37 164-204 14-50 (66)
108 PRK08198 threonine dehydratase 61.3 59 0.0013 30.6 9.1 66 152-221 324-395 (404)
109 PRK00227 glnD PII uridylyl-tra 58.9 54 0.0012 33.9 8.8 64 157-223 548-613 (693)
110 PRK10622 pheA bifunctional cho 57.3 63 0.0014 30.9 8.5 61 164-228 307-368 (386)
111 cd04892 ACT_AK-like_2 ACT doma 57.3 50 0.0011 21.3 6.1 44 157-204 2-49 (65)
112 PRK11898 prephenate dehydratas 56.9 44 0.00095 30.5 7.1 60 164-227 207-267 (283)
113 cd04890 ACT_AK-like_1 ACT doma 56.4 58 0.0013 21.8 7.5 35 164-204 13-47 (62)
114 PRK11152 ilvM acetolactate syn 53.3 83 0.0018 23.3 6.8 58 159-222 7-67 (76)
115 PRK11895 ilvH acetolactate syn 52.9 81 0.0018 26.6 7.6 44 158-205 5-51 (161)
116 PRK13562 acetolactate synthase 51.9 54 0.0012 25.0 5.7 61 158-222 5-68 (84)
117 cd04921 ACT_AKi-HSDH-ThrA-like 50.4 85 0.0019 22.0 6.5 37 164-204 14-50 (80)
118 cd04868 ACT_AK-like ACT domain 49.5 54 0.0012 20.6 4.9 37 164-204 13-49 (60)
119 COG0077 PheA Prephenate dehydr 48.7 1.2E+02 0.0027 27.9 8.6 68 158-229 197-266 (279)
120 cd04912 ACT_AKiii-LysC-EC-like 47.0 1E+02 0.0022 21.9 7.9 42 157-204 3-48 (75)
121 cd04916 ACT_AKiii-YclM-BS_2 AC 46.0 87 0.0019 20.8 6.6 37 164-204 14-50 (66)
122 PF13887 MRF_C1: Myelin gene r 45.1 42 0.00092 21.7 3.5 33 113-145 3-35 (36)
123 COG0317 SpoT Guanosine polypho 44.8 81 0.0018 32.8 7.4 48 155-204 627-676 (701)
124 KOG4447 Transcription factor T 44.6 23 0.0005 30.1 3.0 45 88-132 29-78 (173)
125 cd04923 ACT_AK-LysC-DapG-like_ 41.7 98 0.0021 20.1 5.9 35 164-204 13-47 (63)
126 PRK06737 acetolactate synthase 41.5 1.3E+02 0.0028 22.3 6.3 44 158-205 5-51 (76)
127 PF05088 Bac_GDH: Bacterial NA 41.0 2E+02 0.0043 32.8 10.1 74 152-227 486-565 (1528)
128 KOG2726 Mitochondrial polypept 40.7 3.5E+02 0.0076 26.2 10.9 106 93-204 79-195 (386)
129 PF00170 bZIP_1: bZIP transcri 40.5 44 0.00095 23.3 3.5 22 124-145 26-47 (64)
130 smart00338 BRLZ basic region l 40.4 42 0.00091 23.5 3.4 22 124-145 26-47 (65)
131 PF00120 Gln-synt_C: Glutamine 40.0 1.1E+02 0.0023 27.1 6.8 60 166-227 67-128 (259)
132 PF02344 Myc-LZ: Myc leucine z 39.3 32 0.0007 21.6 2.3 16 90-105 14-29 (32)
133 cd04906 ACT_ThrD-I_1 First of 38.8 1.5E+02 0.0033 21.5 7.9 59 157-221 3-64 (85)
134 PLN02317 arogenate dehydratase 38.6 1.8E+02 0.004 28.0 8.4 62 164-229 293-369 (382)
135 cd04934 ACT_AK-Hom3_1 CT domai 37.6 1.5E+02 0.0033 21.2 7.9 52 164-221 14-65 (73)
136 PRK15385 magnesium transport p 36.7 3E+02 0.0065 24.6 8.9 40 153-192 140-180 (225)
137 cd04935 ACT_AKiii-DAPDC_1 ACT 36.5 1.6E+02 0.0035 21.1 6.8 37 164-206 14-50 (75)
138 PRK08526 threonine dehydratase 36.1 2.2E+02 0.0048 27.2 8.6 68 152-221 323-394 (403)
139 cd04933 ACT_AK1-AT_1 ACT domai 35.1 1.8E+02 0.004 21.3 8.4 35 164-204 14-48 (78)
140 PF13133 DUF3949: Protein of u 33.3 8.7 0.00019 27.7 -1.1 10 9-18 39-48 (62)
141 PF06005 DUF904: Protein of un 33.2 90 0.0019 22.9 4.3 24 119-142 13-36 (72)
142 COG2061 ACT-domain-containing 32.3 2.8E+02 0.006 23.8 7.5 38 158-197 8-49 (170)
143 PRK08787 peptide chain release 30.1 4.7E+02 0.01 24.6 11.0 84 116-205 32-125 (313)
144 cd04918 ACT_AK1-AT_2 ACT domai 29.1 1.4E+02 0.003 20.5 4.5 37 164-204 13-49 (65)
145 COG4710 Predicted DNA-binding 28.9 1.2E+02 0.0025 22.9 4.2 32 96-131 16-48 (80)
146 PF10046 BLOC1_2: Biogenesis o 28.6 25 0.00054 27.1 0.7 15 93-107 51-65 (99)
147 TIGR01268 Phe4hydrox_tetr phen 28.1 3.6E+02 0.0078 26.5 8.6 65 156-226 19-84 (436)
148 cd04924 ACT_AK-Arch_2 ACT doma 27.2 1.9E+02 0.0041 19.0 6.6 37 164-204 14-50 (66)
149 PF11619 P53_C: Transcription 27.1 72 0.0016 23.4 2.8 35 189-225 10-47 (71)
150 cd04915 ACT_AK-Ectoine_2 ACT d 26.7 1.4E+02 0.0031 20.7 4.3 32 164-197 14-45 (66)
151 PF01166 TSC22: TSC-22/dip/bun 26.6 1.1E+02 0.0024 21.9 3.6 24 124-147 21-44 (59)
152 PRK10820 DNA-binding transcrip 26.3 89 0.0019 30.8 4.2 39 156-197 1-40 (520)
153 PF04380 BMFP: Membrane fusoge 25.7 84 0.0018 23.3 3.1 22 117-138 57-78 (79)
154 COG3978 Acetolactate synthase 25.6 3.1E+02 0.0067 21.0 7.0 61 157-223 5-68 (86)
155 PF13224 DUF4032: Domain of un 24.9 1.5E+02 0.0033 25.3 4.9 35 170-206 21-55 (165)
156 cd04913 ACT_AKii-LysC-BS-like_ 24.8 2.2E+02 0.0047 18.9 6.3 25 164-190 12-36 (75)
157 TIGR02079 THD1 threonine dehyd 24.0 4.9E+02 0.011 24.8 8.7 64 152-221 322-390 (409)
158 TIGR01270 Trp_5_monoox tryptop 23.9 3.7E+02 0.008 26.7 7.8 65 158-228 34-101 (464)
159 PRK08639 threonine dehydratase 23.7 4.7E+02 0.01 24.9 8.5 64 152-221 333-401 (420)
160 PF03927 NapD: NapD protein; 23.6 3E+02 0.0066 20.2 7.0 39 159-205 9-48 (79)
161 PRK15422 septal ring assembly 23.5 1.6E+02 0.0035 22.3 4.1 27 119-145 13-39 (79)
162 PRK03987 translation initiatio 23.3 4.5E+02 0.0099 23.8 7.9 46 157-204 179-227 (262)
163 cd04937 ACT_AKi-DapG-BS_2 ACT 22.8 2.5E+02 0.0054 19.0 4.9 30 164-197 14-43 (64)
164 PF07485 DUF1529: Domain of Un 22.4 2.8E+02 0.0061 22.4 5.7 49 170-220 70-121 (123)
165 PF07716 bZIP_2: Basic region 22.3 1.4E+02 0.0031 20.1 3.5 22 124-145 25-46 (54)
166 KOG3501 Molecular chaperone Pr 21.9 1.9E+02 0.0042 23.1 4.5 35 112-146 62-96 (114)
167 cd04936 ACT_AKii-LysC-BS-like_ 21.6 2.4E+02 0.0051 18.2 6.4 34 164-203 13-46 (63)
168 cd04891 ACT_AK-LysC-DapG-like_ 21.4 2.2E+02 0.0049 17.9 6.1 25 164-190 11-35 (61)
169 PF14357 DUF4404: Domain of un 20.9 1.2E+02 0.0025 22.9 3.0 81 95-182 1-85 (85)
170 PRK13936 phosphoheptose isomer 20.2 5.1E+02 0.011 21.9 7.3 37 152-190 110-147 (197)
171 PRK08178 acetolactate synthase 20.2 3.8E+02 0.0083 20.8 5.8 46 156-205 9-57 (96)
172 PF10393 Matrilin_ccoil: Trime 20.0 2.5E+02 0.0054 19.1 4.2 27 120-146 19-45 (47)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.43 E-value=2.2e-13 Score=94.93 Aligned_cols=54 Identities=33% Similarity=0.441 Sum_probs=50.4
Q ss_pred cccccchHHHHHHHHHHHHhHHHHHhCCCCC---CCCchhhhHHHHHHHHHHHHHHH
Q 026746 80 ERGHRHVINERMRRERERQNYLALHSILPPG---TKNDKNSIVKTTANMIHELQCCK 133 (234)
Q Consensus 80 ~~~~~H~~sER~RRekln~~f~~LrslvP~~---~K~DKaSIL~~aI~yIk~Le~~v 133 (234)
.....|..+||+||++||+.|..|+++||.. .|+||++||..||+||+.|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999998 89999999999999999999875
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.41 E-value=4.4e-13 Score=91.69 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhHHHHHhCCCC---CCCCchhhhHHHHHHHHHHHHHHHH
Q 026746 87 INERMRRERERQNYLALHSILPP---GTKNDKNSIVKTTANMIHELQCCKQ 134 (234)
Q Consensus 87 ~sER~RRekln~~f~~LrslvP~---~~K~DKaSIL~~aI~yIk~Le~~v~ 134 (234)
..||+||++||+.|..|+++||. ..|.||++||..||+||+.|+.+++
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999994 6799999999999999999999875
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.38 E-value=6.7e-13 Score=91.99 Aligned_cols=49 Identities=33% Similarity=0.483 Sum_probs=46.1
Q ss_pred cccchHHHHHHHHHHHHhHHHHHhCCCCC-----CCCchhhhHHHHHHHHHHHH
Q 026746 82 GHRHVINERMRRERERQNYLALHSILPPG-----TKNDKNSIVKTTANMIHELQ 130 (234)
Q Consensus 82 ~~~H~~sER~RRekln~~f~~LrslvP~~-----~K~DKaSIL~~aI~yIk~Le 130 (234)
...|...||+||.+||+.|..|+.+||.. .|.||++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 35799999999999999999999999986 78999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.49 E-value=2.5e-07 Score=87.97 Aligned_cols=54 Identities=31% Similarity=0.418 Sum_probs=49.7
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHhCCCCC----CCCchhhhHHHHHHHHHHHHHHHH
Q 026746 81 RGHRHVINERMRRERERQNYLALHSILPPG----TKNDKNSIVKTTANMIHELQCCKQ 134 (234)
Q Consensus 81 ~~~~H~~sER~RRekln~~f~~LrslvP~~----~K~DKaSIL~~aI~yIk~Le~~v~ 134 (234)
++..|.+-|||||++||+++..|..|||.. .+..|.+||..+.+||++|++.-+
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999986 466799999999999999998665
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.37 E-value=9.9e-07 Score=76.07 Aligned_cols=58 Identities=28% Similarity=0.386 Sum_probs=50.8
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHhCCCCCC-------CCchhhhHHHHHHHHHHHHHHHHHHHh
Q 026746 81 RGHRHVINERMRRERERQNYLALHSILPPGT-------KNDKNSIVKTTANMIHELQCCKQELER 138 (234)
Q Consensus 81 ~~~~H~~sER~RRekln~~f~~LrslvP~~~-------K~DKaSIL~~aI~yIk~Le~~v~~Le~ 138 (234)
++..|.-+||+||+.||..|..|..|||... |..||-||..||+||..|..++..-+.
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~ 126 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEE 126 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999643 667999999999999999987755444
No 6
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.35 E-value=2.9e-07 Score=84.19 Aligned_cols=61 Identities=34% Similarity=0.430 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhHHHHHhCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Q 026746 87 INERMRRERERQNYLALHSILPPG--TKNDKNSIVKTTANMIHELQCCKQELERKNYELESNL 147 (234)
Q Consensus 87 ~sER~RRekln~~f~~LrslvP~~--~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le~~s 147 (234)
-.||||-+.||..|+.||+|||.. .|..||+||+.|.+||.+|+..+.+|-..|.++++..
T Consensus 66 sNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~ 128 (373)
T KOG0561|consen 66 SNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKRLK 128 (373)
T ss_pred chHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHH
Confidence 369999999999999999999974 8999999999999999999999988877666666543
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.21 E-value=9.8e-07 Score=79.27 Aligned_cols=55 Identities=29% Similarity=0.397 Sum_probs=48.7
Q ss_pred cccccchHHHHHHHHHHHHhHHHHHhCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH
Q 026746 80 ERGHRHVINERMRRERERQNYLALHSILPPG--------TKNDKNSIVKTTANMIHELQCCKQ 134 (234)
Q Consensus 80 ~~~~~H~~sER~RRekln~~f~~LrslvP~~--------~K~DKaSIL~~aI~yIk~Le~~v~ 134 (234)
-+..+|-+-|||||.|||+++..|+.|||.. +|.+||-||+-|++|++.|+....
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3567788999999999999999999999952 788999999999999999998553
No 8
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.91 E-value=0.0001 Score=54.86 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=55.4
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCC----ccCHHHHHHHHHHHHHh
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGA----GAVEKDVQRALQKVEDK 225 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~----~~~~~~Ik~aL~~v~~k 225 (234)
.|+|.|+ |+|+ |.+|..+|.++|+++.++..+|.+++..=++-|....+. ..-...|+++|...++.
T Consensus 3 vveV~~~DRpGL--L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKL--LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcH--HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 5899999 9999 999999999999999999999998887767777665544 33345788888887764
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.83 E-value=1.9e-05 Score=80.60 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=49.0
Q ss_pred cccccchHHHHHHHHHHHHhHHHHHhCCCCC----CCCchhhhHHHHHHHHHHHHHH
Q 026746 80 ERGHRHVINERMRRERERQNYLALHSILPPG----TKNDKNSIVKTTANMIHELQCC 132 (234)
Q Consensus 80 ~~~~~H~~sER~RRekln~~f~~LrslvP~~----~K~DKaSIL~~aI~yIk~Le~~ 132 (234)
..+.+|..+|||||+++|..+..|.+|||.. -|+||.+||..||.+|+.+++.
T Consensus 19 ~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 19 KKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 3578899999999999999999999999986 4999999999999999999885
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.82 E-value=6.6e-05 Score=66.89 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=52.0
Q ss_pred CCccccccchHHHHHHHHHHHHhHHHHHhCCCCC-CCCc--hhhhHHHHHHHHHHHHHHHHHHHh
Q 026746 77 LDSERGHRHVINERMRRERERQNYLALHSILPPG-TKND--KNSIVKTTANMIHELQCCKQELER 138 (234)
Q Consensus 77 ~~~~~~~~H~~sER~RRekln~~f~~LrslvP~~-~K~D--KaSIL~~aI~yIk~Le~~v~~Le~ 138 (234)
.....+..|..-||+||..|.++|..|+-.||.+ ...+ -++||..|.+||+.|+.+..+...
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 4567788999999999999999999999999987 3333 589999999999999987654433
No 11
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.72 E-value=0.00032 Score=51.65 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=52.5
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee-cCcEEEEEEEEEEecCC---ccCHHHHHHHHHHHHHh
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF-SDQKLTAVLDIETQMGA---GAVEKDVQRALQKVEDK 225 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~-~dg~l~~~lti~~k~~~---~~~~~~Ik~aL~~v~~k 225 (234)
++++|.|+ ++|+ |.+|..+|..+||++++++.++ .||...-++.|.-.-+. ......|+++|.++++.
T Consensus 1 ~~~ei~~~Dr~gL--fa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 1 FLLKLFCSDRKGL--LHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred CEEEEEECCCCCH--HHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 57899999 9999 9999999999999999999996 67876655666433111 23455688888877764
No 12
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.00041 Score=51.27 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=49.3
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCc----cCHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAG----AVEKDVQRAL 219 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~----~~~~~Ik~aL 219 (234)
+|+|.++ |+|+ |.+|..+|..+||+++++..+|.+++..-++-|....+.. .....|+++|
T Consensus 3 viev~a~DRpGL--L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 3 LVKVDSARKPGI--LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEECCcCCH--HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 6899999 9999 9999999999999999999999999887777776553332 2344566655
No 13
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.59 E-value=0.0006 Score=50.77 Aligned_cols=65 Identities=9% Similarity=0.096 Sum_probs=51.9
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe--ecCcEEEEEEEEEEecCC----ccCHHHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE--FSDQKLTAVLDIETQMGA----GAVEKDVQRALQKVED 224 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss--~~dg~l~~~lti~~k~~~----~~~~~~Ik~aL~~v~~ 224 (234)
+|+|.|+ |+|+ |.+|..+|..+||+++++..+ |.+.+..-++-| ...++ ......|+++|.+.+.
T Consensus 2 vlev~a~DRpGL--L~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGL--LYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccH--HHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5899999 9999 999999999999999999999 988887766777 32222 3345678888877653
No 14
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0025 Score=46.47 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=51.4
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCC-----ccCHHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGA-----GAVEKDVQRALQKVE 223 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~-----~~~~~~Ik~aL~~v~ 223 (234)
+|+|.++ ++|+ +.+|..+|..+|+++++++.++.+|.+.-++.|.-..++ ..-...|+++|.+++
T Consensus 2 ~~~v~~~Dr~gL--l~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGL--LSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCH--HHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 5899999 9999 999999999999999999999999988766666543312 222457777777665
No 15
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.31 E-value=0.0043 Score=44.77 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=40.5
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEEe
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIETQ 205 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~k 205 (234)
..|+|.|+ ++|+ |.+|..+|..+||+++++.+.+. ||...-++.|...
T Consensus 2 ~~i~v~~~Dr~gL--l~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~ 51 (73)
T cd04900 2 TEVFIYTPDRPGL--FARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP 51 (73)
T ss_pred EEEEEEecCCCCH--HHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC
Confidence 46889999 9999 99999999999999999998766 6877656666543
No 16
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.23 E-value=0.003 Score=46.18 Aligned_cols=67 Identities=15% Similarity=0.305 Sum_probs=54.4
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHhh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~ 226 (234)
.++|.+.++ |+|+ +..|..+|...|.++..++.++.+|.+...+.+.. . ......++.+|.++..+.
T Consensus 2 ~~vItv~G~DrpGi--v~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~--~-~~~~~~l~~~L~~l~~~~ 69 (76)
T PF13740_consen 2 QLVITVVGPDRPGI--VAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSI--P-EDSLERLESALEELAEEL 69 (76)
T ss_dssp EEEEEEEEE--TTH--HHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEE--S-HHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCCcH--HHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEe--C-cccHHHHHHHHHHHHHHC
Confidence 578999999 9999 99999999999999999999999999994444444 4 347788999999887654
No 17
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.0028 Score=44.48 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=46.1
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCcc---CHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGA---VEKDVQRALQKV 222 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~---~~~~Ik~aL~~v 222 (234)
+|.|.|+ ++|+ |.+|+..|.++|+++.++++.+.++.....+.|....+... -...|+++|.++
T Consensus 2 ~l~v~~~d~~gl--l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGL--LADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccH--HHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 5788999 9999 99999999999999999999887775554455554333222 233466666543
No 18
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.18 E-value=0.001 Score=59.97 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=53.8
Q ss_pred CccccccchHHHHHHHHHHHHhHHHHHhCC-CC-CCCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 026746 78 DSERGHRHVINERMRRERERQNYLALHSIL-PP-GTKNDKNSIVKTTANMIHELQCCKQELERKNYEL 143 (234)
Q Consensus 78 ~~~~~~~H~~sER~RRekln~~f~~Lrslv-P~-~~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~l 143 (234)
.-++++.-.+.||||=.|+||-|.+|+--- ++ .-..-|+-||-.||+||..||.-++++.+....+
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 446677888999999999999999997543 32 2567899999999999999999998887754444
No 19
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.0046 Score=46.17 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=55.1
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCC-ccCHHHHHHHHHHHHHh
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGA-GAVEKDVQRALQKVEDK 225 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~v~~k 225 (234)
..|.+.|+ ++|+ +.+|.+.|.+.|.++..++..+.+|.+. +.+.....+ ......++.+|.++...
T Consensus 2 ~vl~i~g~D~pGi--va~vt~~la~~g~nI~~~~~~~~~~~f~--~~~~v~~~~~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDRVGI--VAGVSTKLAELNVNILDISQTIMDGYFT--MIMIVDISESNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCCCCH--HHHHHHHHHHcCCCEEechhHhhCCccE--EEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 57899999 9999 9999999999999999988888888888 555555555 45688999999988765
No 20
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.01 E-value=0.0099 Score=43.02 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=53.3
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC------cEEEEEEEEEEecCCccCHHHHHHHHHHHHHhh
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD------QKLTAVLDIETQMGAGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d------g~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~ 226 (234)
|.+.|+ ++|+ +.+|-+.|...|+++..++..+.+ +.+. ++++..+.+......++.+|..+..+.
T Consensus 2 l~v~g~D~~Gi--v~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~--~~~~v~~p~~~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDRPGI--VHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFK--AQATLALPAGTDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCCCCH--HHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEE--EEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 678999 9999 999999999999999998887765 7777 555555555557889999998887664
No 21
>PRK00194 hypothetical protein; Validated
Probab=96.99 E-value=0.0057 Score=45.58 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=55.2
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCC-ccCHHHHHHHHHHHHHh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGA-GAVEKDVQRALQKVEDK 225 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~v~~k 225 (234)
.+.|.+.|+ ++|+ +.+|.+.|.+.|+++..++..+.+|.+. +.+...+.+ ......++..|.++...
T Consensus 3 ~~~ltv~g~DrpGi--va~vt~~la~~g~nI~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~l~~l~~~ 71 (90)
T PRK00194 3 KAIITVIGKDKVGI--IAGVSTVLAELNVNILDISQTIMDGYFT--MIMLVDISESKKDFAELKEELEELGKE 71 (90)
T ss_pred eEEEEEEcCCCCCH--HHHHHHHHHHcCCCEEehhhHhhCCeeE--EEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 568999999 9999 9999999999999999988888888888 555555554 44578888888887765
No 22
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.014 Score=42.00 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=50.6
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee--cCcEEEEEEEEEEecCCc-cCHHHHHHHHHHHHHh
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF--SDQKLTAVLDIETQMGAG-AVEKDVQRALQKVEDK 225 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~--~dg~l~~~lti~~k~~~~-~~~~~Ik~aL~~v~~k 225 (234)
|.+.|+ ++|+ +.+|.+.|.++|+.+..+++.+ ..+.+. +.++...... .....++.+|..+...
T Consensus 2 i~v~g~D~~Gi--v~~it~~l~~~g~nI~~~~~~~~~~~~~f~--~~~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSCPDRPGI--VAAVSGFLAEHGGNIVESDQFVDPDSGRFF--MRVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEEcCCCCCH--HHHHHHHHHHcCCCEEeeeeeecCCCCeEE--EEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 789999 9999 9999999999999999988874 445555 4455544432 5689999999988765
No 23
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.89 E-value=0.013 Score=42.93 Aligned_cols=65 Identities=9% Similarity=0.186 Sum_probs=54.6
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHh
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDK 225 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k 225 (234)
+.|.+.|| ++|+ +.+|-+.|.+.|..+..++....+|.+.+.+.+... ..+...++++|..+..+
T Consensus 2 ~iltv~g~Dr~Gi--Va~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGI--LNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChH--HHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHH
Confidence 57889999 9999 999999999999999999888899999855555543 24678899999988765
No 24
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.80 E-value=0.0051 Score=42.16 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=44.3
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCc--EEEEEEEEEEecCCccCHHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQ--KLTAVLDIETQMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg--~l~~~lti~~k~~~~~~~~~Ik~aL~~v~ 223 (234)
.|.|.|+ ++|+ |.+|++.|.++|+++.++.+...++ ... .+.+.. +......+.++|+++.
T Consensus 2 ~v~v~~~drpG~--l~~v~~~la~~~inI~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 2 RVRVIVPDRPGI--LADVTEILADHGINIDSISQSSDKDGVGIV-FIVIVV---DEEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEETSTTH--HHHHHHHHHHTTEEEEEEEEEEESSTTEEE-EEEEEE---EGHGHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCH--HHHHHHHHHHcCCCHHHeEEEecCCCceEE-EEEEEC---CCCCHHHHHHHHHccc
Confidence 4778899 9999 9999999999999999998887754 222 122222 2455667777777653
No 25
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.61 E-value=0.0021 Score=56.63 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=49.5
Q ss_pred cccccchHHHHHHHHHHHHhHHHHHhCCCC----CCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026746 80 ERGHRHVINERMRRERERQNYLALHSILPP----GTKNDKNSIVKTTANMIHELQCCKQELE 137 (234)
Q Consensus 80 ~~~~~H~~sER~RRekln~~f~~LrslvP~----~~K~DKaSIL~~aI~yIk~Le~~v~~Le 137 (234)
.....+...||+|=+-+|..|..||.+||. ..|..|+.+|--||.||+.|+.-++.-+
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 345566677999999999999999999996 3678999999999999999998776444
No 26
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.026 Score=40.87 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=52.4
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHh
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDK 225 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k 225 (234)
+|.+.++ |+|+ +.+|-+.|.++|+++..++.++.+|.+.+.+ .+..........++.+|..+...
T Consensus 1 ~vtv~G~DrpGi--v~~vt~~la~~~~nI~dl~~~~~~~~f~~~~--~v~~p~~~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 1 LITVTGPDRPGL--TSALTEVLAAHGVRILDVGQAVIHGRLSLGI--LVQIPDSADSEALLKDLLFKAHE 66 (75)
T ss_pred CEEEEcCCCCCH--HHHHHHHHHHCCCCEEecccEEEcCeeEEEE--EEEcCCCCCHHHHHHHHHHHHHH
Confidence 3678898 9999 9999999999999999998888889888444 44444445688899999887654
No 27
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.50 E-value=0.012 Score=42.76 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=40.0
Q ss_pred CceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEE
Q 026746 153 GTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIET 204 (234)
Q Consensus 153 ~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~ 204 (234)
.-.+.|+|.|. ++|+ |.+|...|.+.|+.+.++++... +|.....++++.
T Consensus 4 ~f~~~l~i~~~dr~Gl--L~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V 56 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGL--LADITSVISENGVNIRSINARTNKDDGTARITLTVEV 56 (80)
T ss_dssp -EEEEEEEEEE--TTH--HHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred EEEEEEEEEEEcCCCH--HHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE
Confidence 34678999998 9999 99999999999999999999884 788884455554
No 28
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.033 Score=40.22 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=36.7
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEE
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDI 202 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti 202 (234)
..|.|.++ ++|+ |.+|..+|.++|++++++...+.++...-++.|
T Consensus 2 tri~V~~~D~~Gl--l~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v 47 (72)
T cd04926 2 VRLELRTEDRVGL--LSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV 47 (72)
T ss_pred eEEEEEECCccCH--HHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence 35778888 9999 999999999999999999998887754433344
No 29
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.36 E-value=0.038 Score=38.16 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=37.1
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.|.|.|+ ++|+ |.+|+.+|.++|+.+.++.+.+.++.....+.+..
T Consensus 2 ~l~i~~~d~~g~--l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~ 48 (70)
T cd04873 2 VVEVYAPDRPGL--LADITRVLADLGLNIHDARISTTGERALDVFYVTD 48 (70)
T ss_pred EEEEEeCCCCCH--HHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC
Confidence 4778899 9999 99999999999999999998877665443344444
No 30
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=96.22 E-value=0.0029 Score=65.62 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=53.7
Q ss_pred cccccchHHHHHHHHHHHHhHHHHHhCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHh
Q 026746 80 ERGHRHVINERMRRERERQNYLALHSILPPG-TKNDKNSIVKTTANMIHELQCCKQELER 138 (234)
Q Consensus 80 ~~~~~H~~sER~RRekln~~f~~LrslvP~~-~K~DKaSIL~~aI~yIk~Le~~v~~Le~ 138 (234)
+.+..|++.|+|=|-.||++...|+.+||.. .|..|.+.|..||+||++|+..-+.+..
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~ 334 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKL 334 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccch
Confidence 6688999999999999999999999999987 8999999999999999999986655544
No 31
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.12 E-value=0.087 Score=38.49 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=45.6
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEEecCCccCHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIETQMGAGAVEKDVQRALQKV 222 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v 222 (234)
.|-|.|+ ++|+ +.+|.-+|..+||+|+++++.+. ||...-++.|. -....-+.++.++|++-
T Consensus 3 eI~V~~~Dr~gL--Fa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~--d~~~~~~~~~~~~~~~~ 66 (68)
T cd04928 3 EITFAAGDKPKL--LSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT--GWKRGETAALGHALQKE 66 (68)
T ss_pred EEEEEECCCcch--HHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe--cCCccchHHHHHHHHHh
Confidence 3567788 9999 99999999999999999999855 77655333333 22345566777777764
No 32
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.95 E-value=0.064 Score=36.77 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=34.0
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-----CcEEEEEEEEEE
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-----DQKLTAVLDIET 204 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-----dg~l~~~lti~~ 204 (234)
+.|.++ ++|. |.+|++.|.+.|+++.++.+... +|.....+++++
T Consensus 1 ~~v~~~d~~G~--L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~ 51 (73)
T cd04886 1 LRVELPDRPGQ--LAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET 51 (73)
T ss_pred CEEEeCCCCCh--HHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe
Confidence 356788 9999 99999999999999999887653 355553344444
No 33
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.88 E-value=0.052 Score=38.47 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=42.8
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEEecCCcc-CHHHHHHHHHH
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIETQMGAGA-VEKDVQRALQK 221 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~k~~~~~-~~~~Ik~aL~~ 221 (234)
|.+.+.++ ++|+ +.+|++.|.+.|.++..++.+.. +|.....++++. .+.. ....|.++|++
T Consensus 1 ~~l~i~~~d~~g~--l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v--~~~~~~l~~l~~~L~~ 65 (76)
T cd04888 1 VTLSLLLEHRPGV--LSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT--STMNGDIDELLEELRE 65 (76)
T ss_pred CEEEEEecCCCch--HHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc--CchHHHHHHHHHHHhc
Confidence 35677787 8999 99999999999999999877553 465553344443 4433 44555555554
No 34
>PLN03217 transcription factor ATBS1; Provisional
Probab=95.82 E-value=0.027 Score=43.14 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=44.3
Q ss_pred HHHHHHhHHHHHhCCCCC------CCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 026746 93 RERERQNYLALHSILPPG------TKNDKNSIVKTTANMIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 93 Rekln~~f~~LrslvP~~------~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le~~ 146 (234)
-+.||+....|+.|+|.. .|+.-+-+|++|-.||+.|...|..|..+..+|-.+
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999974 234444589999999999999999999887666543
No 35
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.81 E-value=0.072 Score=37.67 Aligned_cols=61 Identities=13% Similarity=0.216 Sum_probs=44.7
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEEecCCccCHHHHHHHHHHH
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIETQMGAGAVEKDVQRALQKV 222 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v 222 (234)
|++.++ ++|+ |.+|+..|.+.|..+.++++... +|... +.+..++.+..-...|.++|+++
T Consensus 2 l~v~~~d~~g~--L~~i~~~i~~~~~nI~~v~~~~~~~~~~~--~~~~vev~~~~~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNRPGM--LGRVTTAIGEAGGDIGAIDLVEQGRDYTV--RDITVDAPSEEHAETIVAAVRAL 64 (74)
T ss_pred EEEEeCCCCch--HHHHHHHHHHcCCcEEEEEEEEecCCEEE--EEEEEEcCCHHHHHHHHHHHhcC
Confidence 577788 9999 99999999999999999888765 46666 44555555544555566665543
No 36
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.22 E-value=0.087 Score=55.10 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=57.0
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccC---HHHHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAV---EKDVQRALQKVED 224 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~---~~~Ik~aL~~v~~ 224 (234)
.+.--+|+|.|. |+|+ |.+|..+|..+||+|+++..+|.+++..-++-|....+.... ...|+++|...+.
T Consensus 805 s~~~TvlEV~a~DRpGL--L~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 805 TDRRSYMELIALDQPGL--LARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred CCCeEEEEEEeCCchHH--HHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 445567999999 9999 999999999999999999999999998877778665333222 4577777777664
No 37
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.65 E-value=0.36 Score=44.16 Aligned_cols=69 Identities=9% Similarity=0.161 Sum_probs=56.3
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee--cCcEEEEEEEEEEecC-CccCHHHHHHHHHHHHHhh
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF--SDQKLTAVLDIETQMG-AGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~--~dg~l~~~lti~~k~~-~~~~~~~Ik~aL~~v~~k~ 226 (234)
..+.|.+.|+ |+|+ +.+|-+.|.++|..+..+++++ ..|.|. +.+...+. .......++.+|..+...+
T Consensus 5 ~~~vitv~G~DrpGI--Va~Vt~~La~~g~NI~d~s~~~~~~~g~F~--m~i~v~~~~~~~~~~~L~~~L~~l~~~l 77 (286)
T PRK06027 5 QRYVLTLSCPDRPGI--VAAVSNFLYEHGGNIVDADQFVDPETGRFF--MRVEFEGDGLIFNLETLRADFAALAEEF 77 (286)
T ss_pred ceEEEEEECCCCCcH--HHHHHHHHHHCCCCEEEceeEEcCCCCeEE--EEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4577999999 9999 9999999999999999999888 778777 55555552 2456889999999887654
No 38
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.54 E-value=0.36 Score=44.21 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=54.6
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee--cCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHhh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF--SDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~--~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~ 226 (234)
.+.|.|.|+ ++|+ +.+|-+.|-++|+++..+++.+ .++.|. +.++.......+...++++|.++...+
T Consensus 7 ~~vitv~G~DrpGI--Va~VT~~La~~~vNI~dls~~~~~~~~~F~--m~~~~~~p~~~~~~~L~~~L~~l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPSAAGI--VAAVTGFLAEHGCYITELHSFDDRLSGRFF--MRVEFHSEEGLDEDALRAGFAPIAARF 77 (286)
T ss_pred eEEEEEEeCCCCCH--HHHHHHHHHhCCCCEEEeeeeecCCCCeEE--EEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 577999999 9999 9999999999999999888863 456677 455554444567999999999887653
No 39
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.53 E-value=0.21 Score=52.44 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=56.0
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCC----ccCHHHHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGA----GAVEKDVQRALQKVED 224 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~----~~~~~~Ik~aL~~v~~ 224 (234)
......|+|.|+ ++|+ |.+|..+|..+|++|.++.++|.++...-++.|....+. ......|+++|.+++.
T Consensus 840 s~~~t~i~I~~~DrpGL--l~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 840 SNRFTVIEVNGRDRPGL--LYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred CCCeEEEEEEECCcCcH--HHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 344578999999 9999 999999999999999999999998887766777653222 2234678888887774
No 40
>PRK04435 hypothetical protein; Provisional
Probab=94.45 E-value=0.27 Score=40.67 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEEecCCc-cCHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIETQMGAG-AVEKDVQRALQK 221 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~k~~~~-~~~~~Ik~aL~~ 221 (234)
.+..+.|.+.++ ++|+ |.+|++.|.+.|.++.+++.+.. +|.....++|+. .+. .....|-++|+.
T Consensus 66 ~~r~vtL~i~l~Dr~Gl--Ls~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev--s~~~~~L~~Li~~L~~ 134 (147)
T PRK04435 66 KGKIITLSLLLEDRSGT--LSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT--SSMEGDIDELLEKLRN 134 (147)
T ss_pred CCcEEEEEEEEecCCCH--HHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe--CChHHHHHHHHHHHHc
Confidence 677889999998 9999 99999999999999999877654 676553345544 442 244444444443
No 41
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.23 E-value=0.28 Score=51.41 Aligned_cols=69 Identities=13% Similarity=0.230 Sum_probs=55.5
Q ss_pred CceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCc---cCHHHHHHHHHHHH
Q 026746 153 GTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAG---AVEKDVQRALQKVE 223 (234)
Q Consensus 153 ~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~---~~~~~Ik~aL~~v~ 223 (234)
..-..|+|.++ ++|+ |.+|..+|..+||+++++..+|.+|+..-++.|....+.. .....|+++|...+
T Consensus 794 ~~~t~leI~a~DrpGL--La~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 794 GRRTRISLVAPDRPGL--LADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACL 866 (869)
T ss_pred CCeEEEEEEeCCcCcH--HHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 34567999999 9999 9999999999999999999999999987777776543331 22367888887665
No 42
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.23 E-value=0.27 Score=32.14 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=38.6
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC-cEEEEEEEEEEecCCccCHHHHHHHHH
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD-QKLTAVLDIETQMGAGAVEKDVQRALQ 220 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d-g~l~~~lti~~k~~~~~~~~~Ik~aL~ 220 (234)
+++.|+ ++|. +.+|++.|...++++.++.....+ +... +.+..+.........+.++|+
T Consensus 1 l~v~~~~~~~~--l~~i~~~l~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGL--LADITTVIAEEKINILSVNTRTDDDGLAT--IRLTLEVRDLEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcH--HHHHHHHHHhCCCCEEEEEeEECCCCEEE--EEEEEEECCHHHHHHHHHHHh
Confidence 356777 8999 999999999999999988776554 4444 334443333223344444444
No 43
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.18 E-value=0.27 Score=51.61 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCC-c---cCHHHHHHHHHHHHHhh
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGA-G---AVEKDVQRALQKVEDKL 226 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~-~---~~~~~Ik~aL~~v~~k~ 226 (234)
...-..|+|.++ ++|+ |.+|..+|..+||+|+++..+|.||...-++.|...-+. . .-...|+++|.+++...
T Consensus 811 ~~~~T~i~V~a~DrpGL--La~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 811 QRPVTVLEIIAPDRPGL--LARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred CCCeEEEEEEECCCCCH--HHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 344567999999 9999 999999999999999999999999988766777654333 1 23457888888777543
No 44
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=93.92 E-value=0.56 Score=42.86 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=53.5
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCC-ccCHHHHHHHHHH-HHHh
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGA-GAVEKDVQRALQK-VEDK 225 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~-v~~k 225 (234)
.|.+.|+ ++|+ +..|-+.|-+.|..++.++.+.. +|.|. +.++....+ ..+...++.+|+. +...
T Consensus 2 ~itv~g~D~~GI--VA~Vt~~La~~g~NI~d~sq~~~~~~~~F~--mr~~v~~~~~~~~~~~l~~~l~~~~~~~ 71 (280)
T TIGR00655 2 ILLVSCPDQKGL--VAAISTFIAKHGANIISNDQHTDPETGRFF--MRVEFQLEGFRLEESSLLAAFKSALAEK 71 (280)
T ss_pred EEEEECCCCCCh--HHHHHHHHHHCCCCEEeeeEEEcCCCCeEE--EEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4688999 9999 99999999999999999888875 48888 666666655 4678899999998 5544
No 45
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.67 E-value=0.65 Score=28.55 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=28.7
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD 193 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d 193 (234)
|.+.|+ ++|. +.+|++.|...|+++..+..+..+
T Consensus 1 i~i~~~~~~~~--l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGL--LAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCch--HHHHHHHHHHCCCcEEEEEeEEcC
Confidence 467788 8899 999999999999999988776543
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.65 E-value=0.32 Score=50.81 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=53.3
Q ss_pred CceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE-ecCCccCHHHHHHHHHHHH
Q 026746 153 GTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET-QMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 153 ~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~-k~~~~~~~~~Ik~aL~~v~ 223 (234)
..-..|+|.|+ ++|+ |.+|..+|..+||+|+++..+|.||...-++.|.. +.....-...|+++|.+++
T Consensus 784 ~~~T~i~V~a~DrpGL--La~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 784 GQYYILSVSANDRPGL--LYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CCEEEEEEEeCCcchH--HHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 34567899999 9999 99999999999999999999999998876677732 1111233457777777655
No 47
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.64 E-value=0.44 Score=49.25 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=55.0
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHh
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDK 225 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k 225 (234)
.-+.|.|.|+ ++|+ +.+|...|..+|++|++++..+.||.+..++.|....+.......|+++|.+++..
T Consensus 598 ~~~~V~V~~~DrpGL--fa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 598 HMVEVTVVAPDRRGL--LSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALDG 668 (774)
T ss_pred CeEEEEEEecCCccH--HHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHcC
Confidence 4467889999 9999 99999999999999999999998998876666654333333346788888776543
No 48
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.63 E-value=0.29 Score=51.12 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=55.1
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCc---cCHHHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAG---AVEKDVQRALQKVE 223 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~---~~~~~Ik~aL~~v~ 223 (234)
.+.--+|+|.++ |+|+ |.+|.++|..+|++++++..+|.+++..-++-|...-+.. .....|+++|.+.+
T Consensus 780 s~~~T~iev~a~DrpGL--L~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 780 KQEQTEMELFALDRAGL--LAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CCCeEEEEEEeCCchHH--HHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 444567999999 9999 9999999999999999999999999987777776543222 22367777776654
No 49
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.41 E-value=0.34 Score=50.29 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=52.6
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCc---cCHHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAG---AVEKDVQRALQKV 222 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~---~~~~~Ik~aL~~v 222 (234)
.+.--.|+|.|. |+|+ |.+|.++|..+|+++.++.++|.++....++.|....+.. .....|+++|...
T Consensus 776 s~~~t~~~v~~~DrpGl--l~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~ 848 (850)
T TIGR01693 776 SRKATIMEVRALDRPGL--LARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAAS 848 (850)
T ss_pred CCCeEEEEEEECCccHH--HHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 344567999999 9999 9999999999999999999999887766666666544332 2345666666554
No 50
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.34 E-value=0.4 Score=49.55 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=44.4
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEec
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQM 206 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~ 206 (234)
-..|+|.|+ ++|+ |.+|..+|..+|++|+++.++|.+|...-++.|....
T Consensus 707 ~t~i~V~a~DrpGL--la~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~ 757 (774)
T PRK03381 707 ATVLEVRAADRPGL--LARLARALERAGVDVRWARVATLGADVVDVFYVTGAA 757 (774)
T ss_pred eEEEEEEeCCchhH--HHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence 467999999 9999 9999999999999999999999999887777776543
No 51
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.32 E-value=0.31 Score=35.02 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=35.1
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.|+|.|. +.|+ +.+|+..+.+.+..+.++++... |.+. ++++.
T Consensus 2 ~l~I~~~dr~Gl--l~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~v 45 (74)
T cd04877 2 RLEITCEDRLGI--TQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFPT 45 (74)
T ss_pred EEEEEEEccchH--HHHHHHHHHHCCCceEEEEEecC-CeEE--EEeEe
Confidence 4788888 9999 99999999999999999998765 5544 55554
No 52
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.29 E-value=0.78 Score=31.27 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=39.8
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.+.+.|+ ++|. |.+|++.|.+.+.++.++..... +|... +.+... +......+.++|++
T Consensus 2 ~l~i~~~d~~g~--l~~i~~~l~~~~~~i~~~~~~~~~~~~~~--~~i~~~--~~~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGV--LRDLTGVIAEHGGNITYTQQFIEREGKAR--IYMELE--GVGDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCCh--HHHHHHHHHhCCCCEEEEEEeccCCCeEE--EEEEEe--ccccHHHHHHHHhC
Confidence 4677888 9999 99999999999999998877654 34444 444443 22334444455543
No 53
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=92.63 E-value=1.2 Score=31.84 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCc-EEEEEEEEEEecCCccCHHHHHHHHHHHHHh
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQ-KLTAVLDIETQMGAGAVEKDVQRALQKVEDK 225 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg-~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k 225 (234)
++|. |.+||+.+...|+.+++++|....+ .-...+.|.+.. ......++.+|.++...
T Consensus 9 ~pG~--L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~--~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 9 KPGA--LAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG--HIDDPDVKEALEELKRV 67 (75)
T ss_pred cCCH--HHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC--CCCCHHHHHHHHHHHHh
Confidence 7899 9999999999999999999986543 222224444432 22335555555555443
No 54
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=92.44 E-value=0.91 Score=41.71 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=52.2
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe--ecCcEEEEEEEEEEe--cCCccCHHHHHHHHHHHHHhh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE--FSDQKLTAVLDIETQ--MGAGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss--~~dg~l~~~lti~~k--~~~~~~~~~Ik~aL~~v~~k~ 226 (234)
.+.|.|.|+ ++|+ +..|-+.|-+.|..++.++.. +..|.+. +.++.. .....+...++++|+.+....
T Consensus 9 ~~iitv~G~Dr~GI--VA~Vs~~Lae~g~NI~disq~~d~~~~~ff--m~i~~~~~~~~~~~~~~l~~~l~~l~~~l 81 (289)
T PRK13010 9 SYVLTLACPSAPGI--VAAVSGFLAEKGCYIVELTQFDDDESGRFF--MRVSFHAQSAEAASVDTFRQEFQPVAEKF 81 (289)
T ss_pred CEEEEEECCCCCCc--HHHHHHHHHHCCCCEEecccccccccCcEE--EEEEEEcCCCCCCCHHHHHHHHHHHHHHh
Confidence 467899999 9999 999999999999999987775 3445566 344433 223567889999999877653
No 55
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=92.20 E-value=1.7 Score=31.49 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=41.7
Q ss_pred EEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC-cEEEEEEEEEEecCCccCHHHHHHHHHHHHH
Q 026746 159 NVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD-QKLTAVLDIETQMGAGAVEKDVQRALQKVED 224 (234)
Q Consensus 159 ei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d-g~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~ 224 (234)
.+.-+ ++|. |.+|++.+.++|+.++++.+.... +.....+.|.+. +......++.+|..+..
T Consensus 5 ~~~~~d~~G~--L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~--~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 5 VFTLPNKPGA--LYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE--GHIEDPNVAEALEELKR 68 (80)
T ss_pred EEEECCCCCH--HHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE--CCCCCHHHHHHHHHHHH
Confidence 33334 8999 999999999999999999887652 222222445444 22345667777766655
No 56
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=92.14 E-value=0.81 Score=47.59 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=52.9
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe-ecCcEEEEEEEEEEecCC-cc---CHHHHHHHHHHHHHh
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE-FSDQKLTAVLDIETQMGA-GA---VEKDVQRALQKVEDK 225 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss-~~dg~l~~~lti~~k~~~-~~---~~~~Ik~aL~~v~~k 225 (234)
.-..|.|.++ ++|+ |.+|..+|..+||+|++++.+ +.||...-++.|....+. .. -...|+++|.+++..
T Consensus 667 ~~t~i~V~~~DrpgL--la~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 667 GGTEVFIYAPDQPGL--FAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CeEEEEEEeCCCCcH--HHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 3456899999 9999 999999999999999999998 567876655566554333 11 245688888777754
No 57
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.91 E-value=1.2 Score=30.13 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=30.5
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEE
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLT 197 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~ 197 (234)
+.+.++ ++|+ |.+|+..|.+.+..+.++..... +|...
T Consensus 3 l~i~~~d~~g~--l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~ 43 (72)
T cd04878 3 LSVLVENEPGV--LNRISGLFARRGFNIESLTVGPTEDPGISR 43 (72)
T ss_pred EEEEEcCCCcH--HHHHHHHHHhCCCCEEEEEeeecCCCCeEE
Confidence 456666 8999 99999999999999998887654 45555
No 58
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.79 E-value=0.98 Score=31.19 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=39.2
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-C-cEEEEEEEEEEecCCccCHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-D-QKLTAVLDIETQMGAGAVEKDVQRALQKV 222 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-d-g~l~~~lti~~k~~~~~~~~~Ik~aL~~v 222 (234)
.|.+.+. ++|+ +.+|+..|.+.+..+.++..... + |... +.+..... +...+++.+.++
T Consensus 2 yl~i~~~d~~g~--l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~--~~i~~~~~---~~~~l~~~i~~L 63 (79)
T cd04881 2 YLRLTVKDKPGV--LAKITGILAEHGISIESVIQKEADGGETAP--VVIVTHET---SEAALNAALAEI 63 (79)
T ss_pred EEEEEeCCCCcH--HHHHHHHHHHcCCCeEEEEEcccCCCCcee--EEEEEccC---CHHHHHHHHHHH
Confidence 3677777 9999 99999999999999998876543 3 4444 44444332 344444444433
No 59
>PRK08577 hypothetical protein; Provisional
Probab=91.49 E-value=1.6 Score=35.21 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=44.9
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCCc-cCHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGAG-AVEKDVQRALQK 221 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~~-~~~~~Ik~aL~~ 221 (234)
..+.+.|.+.+. ++|+ |.+|++.|.+.+.++.++++... ++.....+++. +.+. .....+.+.|++
T Consensus 53 ~k~~~~I~V~~~Dr~Gv--La~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve--v~~~~~~l~~l~~~L~~ 122 (136)
T PRK08577 53 GKKLVEIELVVEDRPGV--LAKITGLLAEHGVDILATECEELKRGELAECVIIVD--LSKSDIDLEELEEELKK 122 (136)
T ss_pred CccEEEEEEEEcCCCCH--HHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE--eCCchhhHHHHHHHHHc
Confidence 445677888888 9999 99999999999999988776654 45455334444 3332 334555555543
No 60
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=90.62 E-value=0.16 Score=42.90 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=42.5
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHhCCCCC--CCCchhhhHHHHHHHHHHHHH
Q 026746 81 RGHRHVINERMRRERERQNYLALHSILPPG--TKNDKNSIVKTTANMIHELQC 131 (234)
Q Consensus 81 ~~~~H~~sER~RRekln~~f~~LrslvP~~--~K~DKaSIL~~aI~yIk~Le~ 131 (234)
...-|.+.||+|=..||+.|.+||-++|.. .|..|.--|.-|..||..|=+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 456799999999999999999999999974 666777777788888877654
No 61
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=90.47 E-value=1.7 Score=29.18 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=39.9
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC--cEEEEEEEEEEecCCccCHHHHHHHHHHH
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD--QKLTAVLDIETQMGAGAVEKDVQRALQKV 222 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d--g~l~~~lti~~k~~~~~~~~~Ik~aL~~v 222 (234)
+.+.++ ++|+ +.+|++.|.+.|+.+.++.+.... |.....+++ .+. ....+.+.|+++
T Consensus 2 l~v~~~d~~g~--l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v----~~~-~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGV--IGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV----DSP-VPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCH--HHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc----CCC-CCHHHHHHHHcC
Confidence 566777 9999 999999999999999998887643 555533334 222 344555555543
No 62
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=90.40 E-value=0.23 Score=49.52 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=32.9
Q ss_pred HHHHHHHhHHHHHhCCCC----CCCCchhhhHHHHHHHHH
Q 026746 92 RRERERQNYLALHSILPP----GTKNDKNSIVKTTANMIH 127 (234)
Q Consensus 92 RRekln~~f~~LrslvP~----~~K~DKaSIL~~aI~yIk 127 (234)
-|+|||.-+..|.||||. ++|.||.|||-=++-|++
T Consensus 36 HRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 36 HRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred HHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 389999999999999997 499999999999999875
No 63
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=90.30 E-value=1.6 Score=45.73 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=50.9
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee-cCcEEEEEEEEEEecCCcc---CHHHHHHHHHHHHH
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF-SDQKLTAVLDIETQMGAGA---VEKDVQRALQKVED 224 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~-~dg~l~~~lti~~k~~~~~---~~~~Ik~aL~~v~~ 224 (234)
.-..|.|.|+ ++|+ |.+|..+|..+||+|++++..+ .||...-++.|.-.-+... ....|+++|.+++.
T Consensus 676 ~~t~V~V~~~DrpGL--fa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~ 749 (854)
T PRK01759 676 GGTEIFIYCQDQANL--FLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALN 749 (854)
T ss_pred CeEEEEEEecCCccH--HHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3457899999 9999 9999999999999999999866 7888765666654322222 22357777777664
No 64
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.11 E-value=2.4 Score=29.95 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=38.6
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec---CcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS---DQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~---dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
+.+.-+ ++|. |.++++.|.+.|..++++..... .|.-...+++.....+ ....|.++|++
T Consensus 2 l~v~~~d~pG~--L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~--~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGT--LKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS--KENELIEELKA 65 (72)
T ss_pred EEEEecCCCcc--HHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch--HHHHHHHHHhC
Confidence 344456 8999 99999999999999998866543 3333333555543222 24455555543
No 65
>PRK07334 threonine dehydratase; Provisional
Probab=90.10 E-value=1.7 Score=41.17 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=41.0
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-----CcEEEEEEEEEE
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-----DQKLTAVLDIET 204 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-----dg~l~~~lti~~ 204 (234)
.+..+.|+|.+. |+|+ |.+|+..|.+.+.++.++++... +|.....++|+.
T Consensus 323 ~~y~v~l~I~~~dr~Gl--L~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V 379 (403)
T PRK07334 323 AGRLARLRVDIRDRPGA--LARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET 379 (403)
T ss_pred CCCEEEEEEEeCCCCCH--HHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe
Confidence 455689999999 9999 99999999999999999988753 566554455554
No 66
>PRK05007 PII uridylyl-transferase; Provisional
Probab=90.03 E-value=1.8 Score=45.41 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=50.2
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEEecCCccC---HHHHHHHHHHHHHh
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIETQMGAGAV---EKDVQRALQKVEDK 225 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~k~~~~~~---~~~Ik~aL~~v~~k 225 (234)
.-..|.|.|+ ++|+ |.+|..+|..+||+|++++..+. ||...-++.|....+.... ...|+++|.+++..
T Consensus 700 ~~t~V~V~a~DrpGL--fa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~ 774 (884)
T PRK05007 700 GGTEIFIWSPDRPYL--FAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQ 774 (884)
T ss_pred CeEEEEEEecCCcCH--HHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 3567899999 9999 99999999999999999997654 6776545555443222222 23477777776643
No 67
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.53 E-value=0.36 Score=46.75 Aligned_cols=41 Identities=32% Similarity=0.546 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhHHHHHhCCCCC----CCCchhhhHHHHHHHHHH
Q 026746 88 NERMRRERERQNYLALHSILPPG----TKNDKNSIVKTTANMIHE 128 (234)
Q Consensus 88 sER~RRekln~~f~~LrslvP~~----~K~DKaSIL~~aI~yIk~ 128 (234)
+-|.|||+-|--|..|..+||-. +..||+||+-=|-.|||-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 56899999999999999999963 678999999999999974
No 68
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.34 E-value=0.3 Score=49.79 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhHHHHHhCCCCC----CCCchhhhHHHHHHHHH
Q 026746 87 INERMRRERERQNYLALHSILPPG----TKNDKNSIVKTTANMIH 127 (234)
Q Consensus 87 ~sER~RRekln~~f~~LrslvP~~----~K~DKaSIL~~aI~yIk 127 (234)
-+-|-||.|-|+-|..|.-+||-- +..|||||+-=||-|++
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 367999999999999999999952 77899999999999986
No 69
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=88.88 E-value=3.7 Score=29.63 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=41.8
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcE-EEEEEEEEEecCCccCHHHHHHHHHHHHHhhh
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK-LTAVLDIETQMGAGAVEKDVQRALQKVEDKLL 227 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~-l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~ 227 (234)
++|- |.+||+.+...|+.++.++|....+. ..+.+-|++.. ....++++|.++...|.
T Consensus 10 ~pG~--L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~----~~~~~~~~l~~L~~~~~ 68 (74)
T cd04904 10 EVGA--LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV----DRGDLDQLISSLRRVVA 68 (74)
T ss_pred CCcH--HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc----ChHHHHHHHHHHHHhcC
Confidence 7898 99999999999999999999866433 22334455543 22347888888766553
No 70
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.16 E-value=4 Score=27.49 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=27.4
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF 191 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~ 191 (234)
+.+.++ ++|+ +.+|+..|.+.+.++.++....
T Consensus 2 l~i~~~d~~g~--l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGA--IAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCCh--HHHHHHHHHHcCcCeeeeEEEe
Confidence 456777 9999 9999999999999998887665
No 71
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=87.95 E-value=5.8 Score=27.53 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=33.0
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
++.|..+ ++|. |.+|++.|.+.|+.+.++-+....+. ..+.+.+
T Consensus 3 ri~v~v~d~pG~--La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGR--LAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCCh--HHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 3556666 8999 99999999999999988876555442 3455555
No 72
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=87.24 E-value=0.48 Score=46.75 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=48.6
Q ss_pred CccccccchHHHHHHHHHHHHhHHHHHhCCCCC----CCCchhhhHHHHHHHHHHHHHHHHH
Q 026746 78 DSERGHRHVINERMRRERERQNYLALHSILPPG----TKNDKNSIVKTTANMIHELQCCKQE 135 (234)
Q Consensus 78 ~~~~~~~H~~sER~RRekln~~f~~LrslvP~~----~K~DKaSIL~~aI~yIk~Le~~v~~ 135 (234)
+.|++..+...||-|-..||+.|..|-.|.-.- ..--|.-||-.|+.-|-.||+||.|
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 345778888999999999999999998876432 3346899999999999999999976
No 73
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.67 E-value=6.8 Score=27.08 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=38.1
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.++.+..+ ++|. |.++++.|.+.|+.+.++..... ++.-. +.|.....+ ...+.++|.+
T Consensus 2 ~~~~v~~~d~pG~--l~~i~~~l~~~~inI~~i~~~~~~~~~~~~--v~i~v~~~~---~~~~~~~L~~ 63 (72)
T cd04883 2 SQIEVRVPDRPGQ--LADIAAIFKDRGVNIVSVLVYPSKEEDNKI--LVFRVQTMN---PRPIIEDLRR 63 (72)
T ss_pred cEEEEEECCCCCH--HHHHHHHHHHcCCCEEEEEEeccCCCCeEE--EEEEEecCC---HHHHHHHHHH
Confidence 35667777 8999 99999999999999987754433 33333 344443222 2355555543
No 74
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=86.62 E-value=3 Score=27.84 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=30.0
Q ss_pred EEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC-cEEE
Q 026746 159 NVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD-QKLT 197 (234)
Q Consensus 159 ei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d-g~l~ 197 (234)
.+.++ ++|. |.++++.|.+.|..+.++.....+ +.-.
T Consensus 2 ~v~~~d~~G~--l~~i~~~l~~~~inI~~~~~~~~~~~~~~ 40 (56)
T cd04889 2 SVFVENKPGR--LAEVTEILAEAGINIKAISIAETRGEFGI 40 (56)
T ss_pred EEEeCCCCCh--HHHHHHHHHHcCCCEeeEEEEEccCCcEE
Confidence 45677 8999 999999999999999888877655 4333
No 75
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.04 E-value=4.4 Score=28.03 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=27.5
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF 191 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~ 191 (234)
.+.+.++ ++|. |.++++.|.+.|+++.++....
T Consensus 3 ~~~v~~~d~~G~--L~~l~~~l~~~~i~i~~~~~~~ 36 (69)
T cd04909 3 DLYVDVPDEPGV--IAEVTQILGDAGISIKNIEILE 36 (69)
T ss_pred EEEEEcCCCCCH--HHHHHHHHHHcCCCceeeEeEE
Confidence 3566778 9999 9999999999999998776544
No 76
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=85.84 E-value=4.1 Score=42.94 Aligned_cols=68 Identities=9% Similarity=0.081 Sum_probs=48.3
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe-ecCcEEEEEEEEEEecCCc-c----CHHHHHHHHHHHH
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE-FSDQKLTAVLDIETQMGAG-A----VEKDVQRALQKVE 223 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss-~~dg~l~~~lti~~k~~~~-~----~~~~Ik~aL~~v~ 223 (234)
.-+.|-|.|+ ++|+ +.+|..+|..+||+|++++.. +.||...-++.|.-.-+.. . -...|+++|.+++
T Consensus 703 ~~t~V~V~~~DrpgL--Fa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQHDF--FAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCCcH--HHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHH
Confidence 4567889999 9999 999999999999999999984 5577755445554322221 1 2345777776665
No 77
>PRK03059 PII uridylyl-transferase; Provisional
Probab=85.50 E-value=4.2 Score=42.68 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=49.3
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe-ecCcEEEEEEEEEEecCC---ccCHHHHHHHHHHHHH
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE-FSDQKLTAVLDIETQMGA---GAVEKDVQRALQKVED 224 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss-~~dg~l~~~lti~~k~~~---~~~~~~Ik~aL~~v~~ 224 (234)
.-+.|-|.|+ ++|+ +.+|.-+|..+||+|++++.. +.||...-++.|.-..+. ..-...|+++|.+++.
T Consensus 677 ~~~~v~i~~~d~~gL--Fa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 677 EGLQVMVYTPDQPDL--FARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLA 750 (856)
T ss_pred CeEEEEEEecCCCcH--HHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHc
Confidence 3456778899 9999 999999999999999999994 568876644444432211 1234567777776654
No 78
>PRK05092 PII uridylyl-transferase; Provisional
Probab=85.49 E-value=4.9 Score=42.46 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=48.7
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee-cCcEEEEEEEEEEecCC----ccCHHHHHHHHHHHH
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF-SDQKLTAVLDIETQMGA----GAVEKDVQRALQKVE 223 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~-~dg~l~~~lti~~k~~~----~~~~~~Ik~aL~~v~ 223 (234)
-..|.|.|+ ++|+ +.+|..+|..+|++|++++..+ .||...-++.|.-..+. ..-...|+++|..++
T Consensus 732 ~t~v~I~~~Dr~GL--fa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 732 VTEVTVLAADHPGL--FSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred eEEEEEEeCCCCcH--HHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 456889999 9999 9999999999999999999876 57765433445432221 123556777777766
No 79
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=84.67 E-value=3.2 Score=35.94 Aligned_cols=66 Identities=6% Similarity=0.097 Sum_probs=52.8
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHH
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKVED 224 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~ 224 (234)
..++|.+-++ |+|+ +..|-+.|.++|..+..++.+..+|.|...+-+... ......++.+|..+..
T Consensus 7 ~~lviTviG~DrpGI--Va~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~---~~~~~~le~~L~~l~~ 73 (190)
T PRK11589 7 HYLVITALGADRPGI--VNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS---WNAITLIESTLPLKGA 73 (190)
T ss_pred cEEEEEEEcCCCChH--HHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC---hhHHHHHHHHHHhhhh
Confidence 4678999999 9999 999999999999999998999999998865555221 3366677777776653
No 80
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.64 E-value=9.5 Score=27.89 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=43.7
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcE-EEEEEEEEEecCCccCHHHHHHHHHHHHHhhhhhh
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK-LTAVLDIETQMGAGAVEKDVQRALQKVEDKLLFRH 230 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~-l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~~~ 230 (234)
++|- |.++|..++..|+.+..+.|....+. ..+.+-|.+..+ ...|+++|.++...+.+.|
T Consensus 10 ~~g~--L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~----~~~i~~~l~~l~~~~~~~~ 71 (74)
T cd04929 10 EVGG--LAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD----QRRLDELVQLLKREVASVN 71 (74)
T ss_pred CCcH--HHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC----HHHHHHHHHHHHHhccccc
Confidence 7888 99999999999999999999865322 222345555422 1378899888877665543
No 81
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.38 E-value=5.6 Score=26.76 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=25.5
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF 191 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~ 191 (234)
+.+.-+ ++|. |.++++.|.+.|..+.++..+.
T Consensus 2 i~v~~~d~pG~--L~~i~~~l~~~~~nI~~i~~~~ 34 (65)
T cd04882 2 LAVEVPDKPGG--LHEILQILSEEGINIEYMYAFV 34 (65)
T ss_pred EEEEeCCCCcH--HHHHHHHHHHCCCChhheEEEc
Confidence 344455 8999 9999999999999998776543
No 82
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.42 E-value=4.1 Score=42.63 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=49.7
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKV 222 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v 222 (234)
....-.+|+.+. |+|+ |.+|-..|..++|+++++..+|.+.+.--++.|....+... ...+++.|.+.
T Consensus 788 ~~~~t~lEv~alDRpGL--La~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l-~~~~~q~l~~~ 856 (867)
T COG2844 788 SNDKTVLEVRALDRPGL--LAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL-NAELRQSLLQR 856 (867)
T ss_pred CCCceEEEEEeCCcccH--HHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC-CHHHHHHHHHH
Confidence 334567899999 9999 99999999999999999999999986654455555433322 44455554443
No 83
>PRK04374 PII uridylyl-transferase; Provisional
Probab=83.41 E-value=7 Score=41.18 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=50.3
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee-cCcEEEEEEEEEEecCC-ccCHHHHHHHHHHHHHh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF-SDQKLTAVLDIETQMGA-GAVEKDVQRALQKVEDK 225 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~-~dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~v~~k 225 (234)
-+.|-|.|+ ++|+ +.+|.-+|..+||+|+++++.+ .||...-++.|....+. ......|+++|.+++..
T Consensus 690 ~~~v~v~~~d~~gL--Fa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 690 ALEVFVYSPDRDGL--FAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAG 761 (869)
T ss_pred eEEEEEEeCCCccH--HHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcC
Confidence 456788898 9999 9999999999999999999986 57876655555433332 22244477777766543
No 84
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=82.50 E-value=5.4 Score=41.42 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=45.0
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.|.|.|.+. |.|+ |.+|...|.+.++.+.++++... +|.....++|+ +.+..-...|-+.|+.
T Consensus 666 ~v~I~I~~~Dr~Gl--L~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie--V~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGL--LRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE--IYNLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCH--HHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE--ECCHHHHHHHHHHHhc
Confidence 456888888 9999 99999999999999999988764 57666444444 4454444444444443
No 85
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=82.44 E-value=4.3 Score=31.41 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=48.4
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCC-ccCHHHHHHHHHHHH
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGA-GAVEKDVQRALQKVE 223 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~v~ 223 (234)
.++|.|-.. |+|+ ...|-..|-++|+.++.+.=+..+|.|+..+- +.+.. ......++..|.+..
T Consensus 3 ~avITV~GkDr~GI--va~is~vLAe~~vNIldisQtvm~~~ftm~~l--V~~~~~~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGI--VAAVSRVLAEHGVNILDISQTVMDGFFTMIML--VDISKEVVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCch--hHHHHHHHHHcCCcEEEHHHHHHhhhceeeeE--EcCChHhccHHHHHHHHHHHH
Confidence 467888887 9999 99999999999999999888888999994444 43332 444555555555443
No 86
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=82.10 E-value=8.4 Score=32.14 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee-cCcEEEEEEEEEEecCC-ccCHHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF-SDQKLTAVLDIETQMGA-GAVEKDVQRALQKV 222 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~-~dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~v 222 (234)
.+..+.+.+.-. |.|+ |.++|+.+-..++.|++++-+. .+|+-..+|+|.+. + ......|-.+|.++
T Consensus 69 k~ri~TL~l~ledr~G~--LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s--sm~~~V~~ii~kl~k~ 138 (150)
T COG4492 69 KERIITLSLSLEDRVGI--LSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS--SMEKDVDKIIEKLRKV 138 (150)
T ss_pred cceEEEEEEEEhhhhhh--HHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch--hhhhhHHHHHHHHhcc
Confidence 556677888777 9999 9999999999999999887764 58887755555553 3 44455555555543
No 87
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=82.05 E-value=0.83 Score=41.26 Aligned_cols=52 Identities=25% Similarity=0.260 Sum_probs=43.0
Q ss_pred cccchHHHHHHHHHHHHhHHHHHhCCCCC---CCCchhhhHHHHHHHHHHHHHHH
Q 026746 82 GHRHVINERMRRERERQNYLALHSILPPG---TKNDKNSIVKTTANMIHELQCCK 133 (234)
Q Consensus 82 ~~~H~~sER~RRekln~~f~~LrslvP~~---~K~DKaSIL~~aI~yIk~Le~~v 133 (234)
+.+=+..||.|--.+|+-|..||.++|.. .|+.|+-.|.-|-+||..|+.-.
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 34445679999999999999999999953 78888889988999999887633
No 88
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=80.98 E-value=12 Score=32.30 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=52.6
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC----cEEEEEEEEEEecCCccCHHHHHHHHHHHHHhh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD----QKLTAVLDIETQMGAGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d----g~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~ 226 (234)
...|++.-+ ++|+ +.+|-+.|.+.|+++.+.++.+.+ |.-.+.+.++..+........++.+|.++...+
T Consensus 95 ~~~v~v~G~DrPGI--V~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL 169 (190)
T PRK11589 95 TVWVQVEVADSPHL--IERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTEL 169 (190)
T ss_pred eEEEEEEECCCCCH--HHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 477888888 9999 999999999999999887777543 322222556665555556888999998877644
No 89
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.68 E-value=22 Score=27.00 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=41.4
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcE-EEEEEEEEEecCCccCHHHHHHHHHHHH
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK-LTAVLDIETQMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~-l~~~lti~~k~~~~~~~~~Ik~aL~~v~ 223 (234)
..+-+..+ ++|- |.+||..+...|+.++.++|...-+. ..+.+-|.+... ....++++|.++.
T Consensus 15 tslif~l~~~pGs--L~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~---~~~~~~~~l~~L~ 79 (90)
T cd04931 15 ISLIFSLKEEVGA--LAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK---SAPALDPIIKSLR 79 (90)
T ss_pred EEEEEEcCCCCcH--HHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC---CCHHHHHHHHHHH
Confidence 33444446 8898 99999999999999999999865322 223345555432 1355566665553
No 90
>PRK11899 prephenate dehydratase; Provisional
Probab=79.68 E-value=12 Score=34.24 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=48.2
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC-cEEEEEEEEEEecCCccCHHHHHHHHHHHHHhhhh
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD-QKLTAVLDIETQMGAGAVEKDVQRALQKVEDKLLF 228 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d-g~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~ 228 (234)
|-+..+ ++|. |.+||+.+...|+..+.++|.-.. +...+.+-|.... ......|++||.++...+.+
T Consensus 197 l~~~~~~~pGa--L~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg--~~~d~~v~~aL~~l~~~~~~ 265 (279)
T PRK11899 197 FVFRVRNIPAA--LYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG--HPEDRNVALALEELRFFSEE 265 (279)
T ss_pred EEEEeCCCCCh--HHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC--CCCCHHHHHHHHHHHHhcCc
Confidence 333445 8999 999999999999999999998663 3233334455432 23345689999999887764
No 91
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.62 E-value=12 Score=26.14 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=36.9
Q ss_pred EEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC-cEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 159 NVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD-QKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 159 ei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d-g~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.|.=| +||- |.++++.|.. |.+++.++-...+ +... +.+..+..+..-...|.++|.+
T Consensus 2 ~v~ipdkPG~--l~~~~~~i~~-~~nI~~~~~~~~~~~~~~--v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGA--LKKFLELLGP-PRNITEFHYRNQGGDEAR--VLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCH--HHHHHHHhCC-CCcEEEEEEEcCCCCceE--EEEEEEeCCHHHHHHHHHHHHH
Confidence 34456 8999 9999999999 9888877665432 2222 3333343455555666666654
No 92
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.28 E-value=19 Score=26.35 Aligned_cols=62 Identities=8% Similarity=0.088 Sum_probs=42.3
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCC-ccCHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGA-GAVEKDVQRALQ 220 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~-~~~~~~Ik~aL~ 220 (234)
.|.|.|| +.|+ =-++...+-++||.+..-..++.+.=-..++.+..+-.. ..-=..+|+.|.
T Consensus 2 vitvnCPDktGL--gcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~ 65 (69)
T cd04894 2 VITINCPDKTGL--GCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLM 65 (69)
T ss_pred EEEEeCCCccCc--ccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHH
Confidence 4789999 9999 899999999999999887776544433333566554333 333445555554
No 93
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=75.70 E-value=11 Score=38.87 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=43.4
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC-cEEEEEEEEEEecCCccCHHHHHHHHH
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD-QKLTAVLDIETQMGAGAVEKDVQRALQ 220 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d-g~l~~~lti~~k~~~~~~~~~Ik~aL~ 220 (234)
.|.|.|.+. +.|+ |.+|...|.+.+..+.++++...+ +.....++|+. .+..--..|-..|+
T Consensus 626 ~v~i~I~~~dr~Gl--L~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV--~~~~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEMFNHQGA--LANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA--RDRVHLANIMRKIR 689 (702)
T ss_pred EEEEEEEEeCCCCH--HHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE--CCHHHHHHHHHHHh
Confidence 456888888 9999 999999999999999999987664 55553444444 44333333444443
No 94
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=75.54 E-value=11 Score=38.58 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=38.4
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEE
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIET 204 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~ 204 (234)
.+.|.|.+. ++|+ |.+|+..|.+.+..+.++++... ++.....++|+.
T Consensus 610 ~v~I~I~~~dr~Gl--LadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV 659 (683)
T TIGR00691 610 IVDINIEAVDRKGV--LSDLTTAISENDSNIVSISTKTYGKREAILNITVEI 659 (683)
T ss_pred EEEEEEEEecCCCH--HHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE
Confidence 456888888 9999 99999999999999999998776 476664445544
No 95
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=75.43 E-value=13 Score=25.42 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=37.3
Q ss_pred EECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCCccCHHHHHHHHHHH
Q 026746 160 VDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGAGAVEKDVQRALQKV 222 (234)
Q Consensus 160 i~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v 222 (234)
+..+ ++|. +.+|.+.|.+.|+.+.++.++.. ++... +.+..+. ..+..+.+.|+++
T Consensus 4 v~~~d~~G~--l~~i~~~l~~~~inI~~~~~~~~~~~~~~~--~~i~v~~---~~~~~~~~~l~~~ 62 (73)
T cd04902 4 VRNTDRPGV--IGKVGTILGEAGINIAGMQVGRDEPGGEAL--MVLSVDE---PVPDEVLEELRAL 62 (73)
T ss_pred EEeCCCCCH--HHHHHHHHHHcCcChhheEeeccCCCCEEE--EEEEeCC---CCCHHHHHHHHcC
Confidence 4566 8999 99999999999999988776553 45554 3444322 2234555555544
No 96
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=74.48 E-value=15 Score=24.74 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=29.9
Q ss_pred EEEEECC----CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 157 RVNVDNP----TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 157 ~iei~C~----r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.|.+.+. .+|+ +.+|+++|.+.|+.+..+..+.++..++ +++..
T Consensus 3 ~isvvg~~~~~~~~~--~~~i~~~l~~~~I~v~~i~~~~s~~~is--~~v~~ 50 (66)
T cd04922 3 ILALVGDGMAGTPGV--AATFFSALAKANVNIRAIAQGSSERNIS--AVIDE 50 (66)
T ss_pred EEEEECCCCCCCccH--HHHHHHHHHHCCCCEEEEEecCcccEEE--EEEeH
Confidence 3555442 4577 9999999999999997665444554455 55544
No 97
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=73.90 E-value=27 Score=32.29 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=50.3
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCC-ccCHHHHHHHHHHHHHh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGA-GAVEKDVQRALQKVEDK 225 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~v~~k 225 (234)
...+.+.|| ++|+ ...|-..|-+.|..++..+-.+. .|+|. ++++-.-.+ ..+...++++|..+..+
T Consensus 7 ~~~LtvsCpd~~Gi--Vaais~~l~~~g~NI~~~~qf~D~~~g~FF--mR~~f~~~~~~~~~~~l~~~f~~~a~~ 77 (287)
T COG0788 7 TFILTVSCPDQPGI--VAAISGFLAEHGCNIVDSDQFDDPETGRFF--MRVEFEGEGGPLDREALRAAFAPLAEE 77 (287)
T ss_pred ceEEEEecCCCCCc--HHHHHHHHHHcCCceeecccccccccCeEE--EEEEEecCCCcccHHHHHHHHHHHHHh
Confidence 467889999 9999 99999999999999986444321 36777 444444333 47889999999887764
No 98
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.19 E-value=31 Score=27.42 Aligned_cols=64 Identities=6% Similarity=0.113 Sum_probs=43.8
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcE-EEEEEEEEEecCCccCHHHHHHHHHHHHHhhh
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK-LTAVLDIETQMGAGAVEKDVQRALQKVEDKLL 227 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~-l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~ 227 (234)
+.+.+ + ++|- |.+||+.+...|+.++.++|....+. ..+.+-|.+.... ..++++|..+...|.
T Consensus 44 lifsl--~~~pGs--L~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~----~~~~~aL~~L~~~~~ 109 (115)
T cd04930 44 LLFSL--KEGFSS--LSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR----SDLLQLISSLRQVAE 109 (115)
T ss_pred EEEEe--CCCCcH--HHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH----HHHHHHHHHHHHhcC
Confidence 44444 5 7898 99999999999999999999876322 1223445554221 248888887766554
No 99
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=69.64 E-value=4.3 Score=27.80 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=29.5
Q ss_pred EECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEE
Q 026746 160 VDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIE 203 (234)
Q Consensus 160 i~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~ 203 (234)
+.+. ++|+ +.+|+..|.+.|..+..+.+...+|.....+++.
T Consensus 4 ~~~~d~~g~--l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 4 HIHKNVPGV--LGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEecCCCcH--HHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 3455 8999 9999999999999887665544445544333333
No 100
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=69.26 E-value=32 Score=32.10 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=44.7
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee-----cCcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF-----SDQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~-----~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.+..+.+.|.=+ ++|. |.++++.+.+.|.+|+++.-.. ..+... ++|..+..+......|.++|++
T Consensus 302 ~gr~~~l~v~l~D~pG~--L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~--v~v~vet~~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGA--LYHLLESIAEARANIVKIDHDRLSKEIPPGFAM--VEITLETRGKEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCH--HHHHHHHHhcCCCcEEEEEeeccccCCCCceEE--EEEEEEeCCHHHHHHHHHHHHH
Confidence 555667888888 9999 9999999999999999885541 234444 4444444443444566666654
No 101
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=69.15 E-value=7.4 Score=35.58 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhHHHHHhCCCCC---CCCchhhhHHHHHHHHHHHHHH
Q 026746 86 VINERMRRERERQNYLALHSILPPG---TKNDKNSIVKTTANMIHELQCC 132 (234)
Q Consensus 86 ~~sER~RRekln~~f~~LrslvP~~---~K~DKaSIL~~aI~yIk~Le~~ 132 (234)
...||+|-..||.-|..||-.||.. .|..|---|..|-.||--|-..
T Consensus 179 narErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~ 228 (285)
T KOG4395|consen 179 NARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCL 228 (285)
T ss_pred chHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHh
Confidence 4579999999999999999999986 5566777788888888776553
No 102
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=68.28 E-value=31 Score=24.23 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=34.5
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEee--cCcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEF--SDQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~--~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
++|+ |.+|+..+.--|..+.+..++. .+|... ++|.+...+ .....|..-|.+
T Consensus 2 ~~Gv--L~Ri~~vf~rRg~nI~sl~v~~~~~~~~~r--iti~v~~~~-~~i~~l~~Ql~K 56 (63)
T PF13710_consen 2 QPGV--LNRITGVFRRRGFNIESLSVGPTEDPGISR--ITIVVSGDD-REIEQLVKQLEK 56 (63)
T ss_dssp STTH--HHHHHHHHHTTT-EECEEEEEE-SSTTEEE--EEEEEES-C-CHHHHHHHHHHC
T ss_pred CcHH--HHHHHHHHhcCCeEEeeEEeeecCCCCEEE--EEEEEeeCc-hhHHHHHHHHhc
Confidence 4788 9999999999998887777766 677777 666554322 333444444443
No 103
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=64.91 E-value=37 Score=28.50 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=39.8
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCCccCHHHHHHHHHHHH
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~ 223 (234)
+.+.-+ ++|. |.+|...+...|..+.|+..... +|... ++|...- .......|..-|.+++
T Consensus 4 isI~ven~pGv--L~rI~~lf~rrg~NI~Sl~v~~t~~~~~sr--iti~V~~-d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 4 LSVLVENEPGV--LSRVAGLFTRRGFNIESLTVGPTEDPDLSR--MTIVVVG-DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEcCCCcH--HHHHHHHHHhCCceEEEEEEeecCCCCEEE--EEEEEEC-CHHHHHHHHHHHhcCc
Confidence 455555 8999 99999999999999988877655 36555 5555542 2233444444444443
No 104
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=64.42 E-value=46 Score=28.50 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=45.6
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee--cCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHhhhh
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF--SDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDKLLF 228 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~--~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~ 228 (234)
|.+.-. ++|+ |.+|...|...|+.+.+..+.. ..|.-. +||...- +......|...|.+++.-...
T Consensus 5 isvlv~n~PGV--L~RIt~lFsrRg~NIesLsv~~t~~~~~sr--~TIvv~~-~~~~ieqL~kQL~KLidVl~V 73 (174)
T CHL00100 5 LSVLVEDESGV--LTRIAGLFARRGFNIESLAVGPAEQKGISR--ITMVVPG-DDRTIEQLTKQLYKLVNILKV 73 (174)
T ss_pred EEEEEeCcCCH--HHHHHHHHHhCCCCeeEEEeeEcCCCCccE--EEEEEEC-CHHHHHHHHHHHHHHhHhhEE
Confidence 445555 8999 9999999999998887777654 345444 5555542 222378888888888765433
No 105
>PRK06382 threonine dehydratase; Provisional
Probab=64.21 E-value=42 Score=31.93 Aligned_cols=66 Identities=12% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe-----ecCcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE-----FSDQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss-----~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.+..+.+.|.-+ ++|. |.+|++.|.+.|.+++++... ..++....+++|+++ +......|++.|++
T Consensus 327 ~~~~~rl~v~v~D~pG~--L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~--~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGN--LYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR--GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCH--HHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC--CHHHHHHHHHHHHH
Confidence 555677888888 9999 999999999999999887653 223444423455553 33344466666653
No 106
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.86 E-value=56 Score=23.67 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=39.5
Q ss_pred EEEEEE---CC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHhhhh
Q 026746 156 VRVNVD---NP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDKLLF 228 (234)
Q Consensus 156 V~iei~---C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~ 228 (234)
++|.|. .+ .+|. +.+|+++|...|+.+--+.+ +...++ +++... .......++++|.+-..++..
T Consensus 2 ~~ItI~~~~~~~~~g~--~~~IF~~La~~~I~VDmI~~--s~~~iS--ftv~~~--d~~~~~~~~~~l~~~l~~~~~ 70 (75)
T cd04932 2 TLVTLKSPNMLHAQGF--LAKVFGILAKHNISVDLITT--SEISVA--LTLDNT--GSTSDQLLTQALLKELSQICD 70 (75)
T ss_pred EEEEEecCCCCCCcCH--HHHHHHHHHHcCCcEEEEee--cCCEEE--EEEecc--ccchhHHHHHHHHHHHHhccE
Confidence 345553 33 6888 99999999999988876643 334455 666552 222234565555555554443
No 107
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.37 E-value=43 Score=22.58 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=27.0
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
++|+ +.+++++|.+.|+++..+..+.++..++ +++..
T Consensus 14 ~~~~--~~~if~~L~~~~I~v~~i~q~~s~~~is--f~v~~ 50 (66)
T cd04919 14 MIGI--AGRMFTTLADHRINIEMISQGASEINIS--CVIDE 50 (66)
T ss_pred CcCH--HHHHHHHHHHCCCCEEEEEecCccceEE--EEEeH
Confidence 5677 9999999999999997665444555555 55544
No 108
>PRK08198 threonine dehydratase; Provisional
Probab=61.31 E-value=59 Score=30.64 Aligned_cols=66 Identities=14% Similarity=0.314 Sum_probs=44.4
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee-----cCcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF-----SDQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~-----~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.+..+.+.|.=+ ++|. |.++++.|...|..++++.-.. ..|... ++|..+..+......|.++|.+
T Consensus 324 ~gr~~~l~v~l~D~PG~--L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~--v~v~ie~~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQ--LAKLLSIIAELGANVIDVDHDRFSPDLRLGEVE--VELTLETRGPEHIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCH--HHHHHHHHhhCCCceEEEEEEEccCCCCCceEE--EEEEEEeCCHHHHHHHHHHHHH
Confidence 455667778777 9999 9999999999999888876653 234444 4444444443344555555544
No 109
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=58.91 E-value=54 Score=33.94 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=52.9
Q ss_pred EEEEE-CC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHHH
Q 026746 157 RVNVD-NP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 157 ~iei~-C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~ 223 (234)
.+.|. |+ +.|+ +.++.-.|--.++.|+++.... +|...+.++|...++....+..+.|+++..+
T Consensus 548 ~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 613 (693)
T PRK00227 548 FFTVIWHGDYPRE--LVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGV 613 (693)
T ss_pred eEEEEecCCcccH--HHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhh
Confidence 34443 47 9999 9999999999999999999888 8888888899987777778888888877543
No 110
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=57.35 E-value=63 Score=30.88 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcE-EEEEEEEEEecCCccCHHHHHHHHHHHHHhhhh
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK-LTAVLDIETQMGAGAVEKDVQRALQKVEDKLLF 228 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~-l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~ 228 (234)
++|. |.++|..+...|+..+.++|.-..+. ..+.+-|... |......+++||.++...|.+
T Consensus 307 ~pGa--L~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e--g~~~d~~~~~aL~~l~~~~~~ 368 (386)
T PRK10622 307 QAGA--LVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ--ANLRSAEMQKALKELGEITRS 368 (386)
T ss_pred CCcH--HHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe--CCCCCHHHHHHHHHHHHhcCc
Confidence 8999 99999999999999999999865433 3344455543 223335689999999887764
No 111
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=57.29 E-value=50 Score=21.29 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=28.7
Q ss_pred EEEEECC----CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 157 RVNVDNP----TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 157 ~iei~C~----r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
+|.+.+. ..|+ +.+++++|.+.++.+..+..+..+..++ +++..
T Consensus 2 ~i~i~g~~~~~~~~~--~~~i~~~l~~~~i~v~~i~~~~~~~~i~--~~v~~ 49 (65)
T cd04892 2 LVSVVGAGMRGTPGV--AARIFSALAEAGINIIMISQGSSEVNIS--FVVDE 49 (65)
T ss_pred EEEEECCCCCCCccH--HHHHHHHHHHCCCcEEEEEcCCCceeEE--EEEeH
Confidence 3555432 4566 9999999999999998775544333333 44443
No 112
>PRK11898 prephenate dehydratase; Provisional
Probab=56.91 E-value=44 Score=30.47 Aligned_cols=60 Identities=17% Similarity=0.071 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcE-EEEEEEEEEecCCccCHHHHHHHHHHHHHhhh
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK-LTAVLDIETQMGAGAVEKDVQRALQKVEDKLL 227 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~-l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~ 227 (234)
++|- |.++|+.+...|+.++.++|.-..+. ..+.+-|.+.. ......++++|.++...|.
T Consensus 207 ~pGs--L~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg--~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 207 LPGA--LYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEG--HIDDVLVAEALKELEALGE 267 (283)
T ss_pred CccH--HHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEc--cCCCHHHHHHHHHHHHhcC
Confidence 5898 99999999999999999999865432 22224444432 2233468888888877664
No 113
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=56.38 E-value=58 Score=21.81 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
+.|. ..+|+++|.+.|+++..+.+ +...++ +++..
T Consensus 13 ~~~~--~~~if~~l~~~~i~v~~i~t--~~~~is--~~v~~ 47 (62)
T cd04890 13 EVGF--LRKIFEILEKHGISVDLIPT--SENSVT--LYLDD 47 (62)
T ss_pred ccCH--HHHHHHHHHHcCCeEEEEec--CCCEEE--EEEeh
Confidence 5677 99999999999999887633 334455 55654
No 114
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=53.28 E-value=83 Score=23.27 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=36.2
Q ss_pred EEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee--cCcEEEEEEEEEEecCCccCHHHHHHHHHHH
Q 026746 159 NVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF--SDQKLTAVLDIETQMGAGAVEKDVQRALQKV 222 (234)
Q Consensus 159 ei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~--~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v 222 (234)
.+.-. ++|+ |.+|+..+..-|..+.|..... .++... +++.+. +....+.|..-|.++
T Consensus 7 si~v~n~pGV--L~Ri~~lf~rRGfnI~sl~v~~t~~~~~sr--iti~v~--~~~~i~ql~kQL~KL 67 (76)
T PRK11152 7 TIKARFRPEV--LERVLRVVRHRGFQVCSMNMTQNTDAQNIN--IELTVA--SERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEECCccH--HHHHHHHHhcCCeeeeeEEeeecCCCCEEE--EEEEEC--CCchHHHHHHHHhcC
Confidence 33334 7999 9999999999888777766654 345444 555552 334444444444443
No 115
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=52.89 E-value=81 Score=26.62 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=33.1
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEe
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQ 205 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k 205 (234)
|.+.-+ ++|. |.+|...+...|..+.|+..... +|... ++|...
T Consensus 5 IsV~veN~pGv--L~rI~~lf~rrg~NI~Sl~v~~te~~~~sr--iti~V~ 51 (161)
T PRK11895 5 LSVLVENEPGV--LSRVAGLFSRRGYNIESLTVGPTEDPGLSR--MTIVTS 51 (161)
T ss_pred EEEEEcCCCcH--HHHHHHHHHhCCCcEEEEEeeecCCCCEEE--EEEEEE
Confidence 455555 8999 99999999999999988777654 36555 555554
No 116
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=51.88 E-value=54 Score=25.00 Aligned_cols=61 Identities=5% Similarity=0.098 Sum_probs=37.5
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe--ecCcEEEEEEEEEEecCCccCHHHHHHHHHHH
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE--FSDQKLTAVLDIETQMGAGAVEKDVQRALQKV 222 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss--~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v 222 (234)
|.+--. ++|+ |.+|-..+..-|..+.|.... ...|.-. +||.+..++......|..-|.++
T Consensus 5 isvlVeN~~GV--L~Rit~lFsRRg~NI~SLtvg~Te~~~iSR--mtivv~~~d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 5 LKLQVADQVST--LNRITSAFVRLQYNIDTLHVTHSEQPGISN--MEIQVDIQDDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEECCCCH--HHHHHHHHhccCcCeeeEEecccCCCCceE--EEEEEeCCCHHHHHHHHHHHhCC
Confidence 344444 7999 999999999887666655554 3456555 66766544434444444444443
No 117
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=50.43 E-value=85 Score=21.97 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=26.2
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.+|+ +.+++++|.+.++.+..+..+..+..++ +++..
T Consensus 14 ~~~~--~~~i~~~L~~~~I~v~~i~~~~~~~~is--f~v~~ 50 (80)
T cd04921 14 VPGI--AARIFSALARAGINVILISQASSEHSIS--FVVDE 50 (80)
T ss_pred CccH--HHHHHHHHHHCCCcEEEEEecCCcceEE--EEEeH
Confidence 4566 9999999999999987665544444444 55544
No 118
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=49.47 E-value=54 Score=20.58 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=25.4
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.+|. +.++++.|.+.++.+..+..+..+..++ +++..
T Consensus 13 ~~~~--~~~i~~~l~~~~i~i~~i~~~~~~~~~s--~~v~~ 49 (60)
T cd04868 13 TPGV--AAKIFSALAEAGINVDMISQSESEVNIS--FTVDE 49 (60)
T ss_pred CCCH--HHHHHHHHHHCCCcEEEEEcCCCcEEEE--EEEeH
Confidence 3466 9999999999999888765544333344 45543
No 119
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=48.69 E-value=1.2e+02 Score=27.95 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=48.3
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEE-EEEEEEEecCCccCHHHHHHHHHHHHHhhhhh
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLT-AVLDIETQMGAGAVEKDVQRALQKVEDKLLFR 229 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~-~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~~ 229 (234)
|=+.-+ ++|- |+++|..+...|++...+.|.-..+.++ +.+-|... |......|++||.++-..+.|.
T Consensus 197 l~f~~~n~PGa--L~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e--g~~~~~~v~~AL~el~~~t~~~ 266 (279)
T COG0077 197 LIFSVPNKPGA--LYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE--GHIDDPLVKEALEELKEITEFV 266 (279)
T ss_pred EEEEcCCCCch--HHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe--cCcCcHhHHHHHHHHHhheeEE
Confidence 334444 8999 9999999999999999999986654432 22344432 2233378999999998877653
No 120
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=47.04 E-value=1e+02 Score=21.86 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=29.9
Q ss_pred EEEEEC---C-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 157 RVNVDN---P-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 157 ~iei~C---~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
+|.|.+ + .+|+ +.+|+++|...|+.+..+. +++..++ +.|..
T Consensus 3 ~Vsi~g~~l~~~~g~--~~~if~~L~~~~I~v~~i~--~s~~~is--~~v~~ 48 (75)
T cd04912 3 LLNIKSNRMLGAHGF--LAKVFEIFAKHGLSVDLIS--TSEVSVS--LTLDP 48 (75)
T ss_pred EEEEEcCCCCCCccH--HHHHHHHHHHcCCeEEEEE--cCCcEEE--EEEEc
Confidence 456643 2 5677 9999999999999998764 3445566 66665
No 121
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.99 E-value=87 Score=20.79 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=26.1
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.+++ +.+++++|.+.|+++..+..+.++..++ ++|..
T Consensus 14 ~~~~--~~~i~~~L~~~~i~v~~i~~~~s~~~is--f~v~~ 50 (66)
T cd04916 14 TVGV--SARATAALAKAGINIRMINQGSSEISIM--IGVHN 50 (66)
T ss_pred CccH--HHHHHHHHHHCCCCEEEEEecCcccEEE--EEEeH
Confidence 4566 9999999999999887665444444455 55543
No 122
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=45.14 E-value=42 Score=21.71 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=29.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 026746 113 NDKNSIVKTTANMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 113 ~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le~ 145 (234)
+||--|..+++.-+++|=+....|+.+.+++|+
T Consensus 3 Vdk~rifmEnV~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 3 VDKERIFMENVGAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 588899999999999999999999998888775
No 123
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=44.78 E-value=81 Score=32.79 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=36.9
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEE
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIET 204 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~ 204 (234)
.+.|.|.-. |+|+ |-+|++.|.+.+..+.+|++... ++.....++|+.
T Consensus 627 ~~~i~v~~~~r~gl--L~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v 676 (701)
T COG0317 627 PVDIEIRAYDRSGL--LRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV 676 (701)
T ss_pred EEEEEEEEccccch--HHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE
Confidence 455777776 9999 99999999999999999988875 455553344444
No 124
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=44.56 E-value=23 Score=30.14 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhHHHHHhCCCCCC--CCch---hhhHHHHHHHHHHHHHH
Q 026746 88 NERMRRERERQNYLALHSILPPGT--KNDK---NSIVKTTANMIHELQCC 132 (234)
Q Consensus 88 sER~RRekln~~f~~LrslvP~~~--K~DK---aSIL~~aI~yIk~Le~~ 132 (234)
-||.|-.++|+.|..|++|+|+.. ++.+ ..|=.+-|....|||.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~q 78 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQKQ 78 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHHH
Confidence 588888999999999999999852 2211 12223555555666653
No 125
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.74 E-value=98 Score=20.14 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=24.7
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.+|+ +.+++++|.+.++.+..+..+ +..++ +.|..
T Consensus 13 ~~~~--~~~i~~~L~~~~i~v~~i~~s--~~~is--~~v~~ 47 (63)
T cd04923 13 HPGV--AAKMFKALAEAGINIEMISTS--EIKIS--CLVDE 47 (63)
T ss_pred CccH--HHHHHHHHHHCCCCEEEEEcc--CCeEE--EEEeH
Confidence 4577 999999999999988876543 33444 44443
No 126
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=41.49 E-value=1.3e+02 Score=22.30 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=30.4
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe--ecCcEEEEEEEEEEe
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE--FSDQKLTAVLDIETQ 205 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss--~~dg~l~~~lti~~k 205 (234)
|.+--. ++|+ |.+|...+..-|..+.|.... ..+|... +||.+.
T Consensus 5 isi~v~n~pGV--L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr--iti~~~ 51 (76)
T PRK06737 5 FSLVIHNDPSV--LLRISGIFARRGYYISSLNLNERDTSGVSE--MKLTAV 51 (76)
T ss_pred EEEEEecCCCH--HHHHHHHHhccCcceEEEEecccCCCCeeE--EEEEEE
Confidence 344444 7999 999999999988776666555 3456555 566553
No 127
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=41.03 E-value=2e+02 Score=32.76 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=47.2
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe---ecCcEE--EEEEEEEEecCCccCHHHHHHHHHHHHHh
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE---FSDQKL--TAVLDIETQMGAGAVEKDVQRALQKVEDK 225 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss---~~dg~l--~~~lti~~k~~~~~~~~~Ik~aL~~v~~k 225 (234)
.+..+.++|..+ .+.. |++||-.|++|||.|+.-..- ..||.- ...+.+...-........+++.|.+...+
T Consensus 486 ~~~~~~lkiy~~~~~~~--Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 486 GPGRLRLKIYHPGEPLP--LSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CCCeEEEEEEcCCCCcC--HHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHH
Confidence 345688999866 7777 999999999999999875554 223443 33345554433334455555555555544
Q ss_pred hh
Q 026746 226 LL 227 (234)
Q Consensus 226 ~~ 227 (234)
-|
T Consensus 564 v~ 565 (1528)
T PF05088_consen 564 VW 565 (1528)
T ss_pred Hh
Confidence 43
No 128
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=40.66 E-value=3.5e+02 Score=26.24 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=58.3
Q ss_pred HHHHHHhHHHHHhCCCC-CCCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcCCCC-CCceEEEEEECCCCChhHH
Q 026746 93 RERERQNYLALHSILPP-GTKNDKNSIVKTTANMIHELQCCKQELERKNYELESNLGLKN-GGTKVRVNVDNPTSGVDSM 170 (234)
Q Consensus 93 Rekln~~f~~LrslvP~-~~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le~~sg~~~-~~~~V~iei~C~r~gld~l 170 (234)
|.++-..+..|++|+-- ..+--+..+..++-+++++++....+|+.. .+..++ ....+.|+|+|.--|.+++
T Consensus 79 ~~~~~~~~~~lk~l~~~~e~e~~~~~a~~E~~~~~~~i~~~~~~l~~~------lLp~~~~D~~~~iiev~aGaGG~Ea~ 152 (386)
T KOG2726|consen 79 RMKLVRELKSLKSLIKEGEDEDMDELAEEEAEEISKEIERSLHELELS------LLPSDPYDAEACIIEVRAGAGGQEAQ 152 (386)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCcccccCeEEEEeCCCCcHHHH
Confidence 44444445557777755 111113344445555555555544444321 111111 3448999999986676666
Q ss_pred HHHHHHHH-------hC--CCeEEEEEEeecCcEEEEEEEEEE
Q 026746 171 LEVLKCLK-------DL--GSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 171 ~~Il~aL~-------~l--~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
+-.++.+. -+ ..+++.+..+..+|.-.|++.|+.
T Consensus 153 ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G 195 (386)
T KOG2726|consen 153 IFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEG 195 (386)
T ss_pred HHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecc
Confidence 66555554 13 456666555566788887777764
No 129
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.48 E-value=44 Score=23.33 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh
Q 026746 124 NMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~le~ 145 (234)
.||.+|+..+..|+..++.+..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888888887666543
No 130
>smart00338 BRLZ basic region leucin zipper.
Probab=40.44 E-value=42 Score=23.45 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh
Q 026746 124 NMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~le~ 145 (234)
.|+.+|+.+++.|+..+..|..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888888887666554
No 131
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=40.00 E-value=1.1e+02 Score=27.13 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEe--cCCccCHHHHHHHHHHHHHhhh
Q 026746 166 GVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQ--MGAGAVEKDVQRALQKVEDKLL 227 (234)
Q Consensus 166 gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k--~~~~~~~~~Ik~aL~~v~~k~~ 227 (234)
+.+.+-+|+++|.++|++|...+.-...|.+- +++.-. +..+...-..|.++++|+.+.-
T Consensus 67 ~~~~~~~i~~~l~~~Gi~ve~~h~E~gpgQ~E--i~~~~~~~l~aaD~~~~~k~~ik~vA~~~G 128 (259)
T PF00120_consen 67 GEDFLEEIVDALEQAGIPVEQIHHEVGPGQYE--INLGPCDPLEAADNLVLFKEIIKEVARKHG 128 (259)
T ss_dssp THHHHHHHHHHHHHCT--EEEEEEESSTTEEE--EEEEEEECHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhccccccccccchHhhc--cccccCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44569999999999999999999988889766 555532 1225566778888888887643
No 132
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=39.26 E-value=32 Score=21.65 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHHHHHh
Q 026746 90 RMRRERERQNYLALHS 105 (234)
Q Consensus 90 R~RRekln~~f~~Lrs 105 (234)
|+||+.+..++..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7899999999999885
No 133
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.78 E-value=1.5e+02 Score=21.55 Aligned_cols=59 Identities=7% Similarity=0.170 Sum_probs=33.6
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-CcEEEEEEEEEEecCC-ccCHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-DQKLTAVLDIETQMGA-GAVEKDVQRALQK 221 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~ 221 (234)
++.+.=| +||- |.++++.|. +-++..+.-... .+.-...+.++++ + ..-...+.++|.+
T Consensus 3 vl~v~ipD~PG~--L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGS--FKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcH--HHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--CcHHHHHHHHHHHHH
Confidence 4666667 9999 999999998 444444333322 1222222555653 3 4445555556554
No 134
>PLN02317 arogenate dehydratase
Probab=38.63 E-value=1.8e+02 Score=28.01 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcE---------------EEEEEEEEEecCCccCHHHHHHHHHHHHHhhhh
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK---------------LTAVLDIETQMGAGAVEKDVQRALQKVEDKLLF 228 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~---------------l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~ 228 (234)
++|. |.++|..+...|+..+.++|.-.-+. +.+.+-|..+. ......+++||.++...+.|
T Consensus 293 ~pG~--L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg--~~~d~~~~~aL~~L~~~~~~ 368 (382)
T PLN02317 293 GPGV--LFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEA--SMADPRAQNALAHLQEFATF 368 (382)
T ss_pred CCch--HHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEc--CcCCHHHHHHHHHHHHhcCe
Confidence 7888 99999999999999999999864222 22334444432 22335678899888887765
Q ss_pred h
Q 026746 229 R 229 (234)
Q Consensus 229 ~ 229 (234)
.
T Consensus 369 l 369 (382)
T PLN02317 369 L 369 (382)
T ss_pred E
Confidence 3
No 135
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=37.62 E-value=1.5e+02 Score=21.23 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=31.6
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.+|. +.+|++.|...|+.+--+.+ +...++ +++....-.......|.+-|++
T Consensus 14 ~~g~--~~~If~~la~~~I~vd~I~~--s~~~is--ftv~~~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 14 SHGF--LARIFAILDKYRLSVDLIST--SEVHVS--MALHMENAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccCH--HHHHHHHHHHcCCcEEEEEe--CCCEEE--EEEehhhcChHHHHHHHHHHHH
Confidence 5788 99999999999988876643 333455 6665421101133355555554
No 136
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=36.67 E-value=3e+02 Score=24.62 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=29.7
Q ss_pred CceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec
Q 026746 153 GTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS 192 (234)
Q Consensus 153 ~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~ 192 (234)
+....+.|.|. .++......+++.|++.++.+.++++...
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~ 180 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPA 180 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeec
Confidence 34567888897 44422377888999999999999998643
No 137
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.48 E-value=1.6e+02 Score=21.15 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=27.1
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEec
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQM 206 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~ 206 (234)
.+|. +.+|+++|...|+.+--+.+ +...++ +++...-
T Consensus 14 ~~g~--~~~IF~~La~~~I~vDmI~~--s~~~is--ftv~~~~ 50 (75)
T cd04935 14 QVGF--LADVFAPFKKHGVSVDLVST--SETNVT--VSLDPDP 50 (75)
T ss_pred ccCH--HHHHHHHHHHcCCcEEEEEe--CCCEEE--EEEeCcc
Confidence 5788 99999999999988876643 334455 6776543
No 138
>PRK08526 threonine dehydratase; Provisional
Probab=36.05 E-value=2.2e+02 Score=27.19 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=46.8
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcE---EEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK---LTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~---l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.+..+.+.+.-| ++|- |.++++.+.+.+.+++.++-...... -.+.+.|..+..+..-...|.++|++
T Consensus 323 ~~r~~~~~~~~~d~pg~--l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGA--LMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCH--HHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 566778888888 9999 99999999999999988776432111 12234555555565556666666654
No 139
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.13 E-value=1.8e+02 Score=21.35 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.+|. +.+|+++|...|+++--+.+ +...++ +++..
T Consensus 14 ~~g~--~a~IF~~La~~~InVDmI~q--s~~sIS--ftV~~ 48 (78)
T cd04933 14 QYGF--LAKVFSIFETLGISVDVVAT--SEVSIS--LTLDP 48 (78)
T ss_pred ccCH--HHHHHHHHHHcCCcEEEEEe--cCCEEE--EEEEh
Confidence 5788 99999999999988876643 334455 66664
No 140
>PF13133 DUF3949: Protein of unknown function (DUF3949)
Probab=33.34 E-value=8.7 Score=27.66 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=8.7
Q ss_pred CCCCcceeEe
Q 026746 9 FHGEGDIFFW 18 (234)
Q Consensus 9 ~~~~~~~~~~ 18 (234)
|+.||++|||
T Consensus 39 y~~Qgn~f~~ 48 (62)
T PF13133_consen 39 YNVQGNPFFI 48 (62)
T ss_pred HhhcCCcccc
Confidence 5689999999
No 141
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.21 E-value=90 Score=22.94 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Q 026746 119 VKTTANMIHELQCCKQELERKNYE 142 (234)
Q Consensus 119 L~~aI~yIk~Le~~v~~Le~~~~~ 142 (234)
+..||+-|.-|+..+++|..++..
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~ 36 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888888888888876433
No 142
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=32.30 E-value=2.8e+02 Score=23.80 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=29.5
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec---CcEEE
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS---DQKLT 197 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~---dg~l~ 197 (234)
+-|.-+ +||- |+++|+-|...|..++++-=+.. +++..
T Consensus 8 ldIEL~D~PGQ--Ll~vLqPls~~g~NiItIiH~r~kk~g~r~p 49 (170)
T COG2061 8 LDIELKDKPGQ--LLKVLQPLSKTGANIITIIHSRDKKYGPRVP 49 (170)
T ss_pred EEEEecCCCcc--hhhhhcchhhcCccEEEEEeecCcccCCcee
Confidence 334445 8999 99999999999999998766544 56666
No 143
>PRK08787 peptide chain release factor 2; Provisional
Probab=30.12 E-value=4.7e+02 Score=24.60 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc-CCCCCCceEEEEEECCCCChhH------HHHHH-HHHHhCCCeEEEE
Q 026746 116 NSIVKTTANMIHELQCCKQELERKNYELESNL-GLKNGGTKVRVNVDNPTSGVDS------MLEVL-KCLKDLGSSTRSI 187 (234)
Q Consensus 116 aSIL~~aI~yIk~Le~~v~~Le~~~~~le~~s-g~~~~~~~V~iei~C~r~gld~------l~~Il-~aL~~l~Ldv~sv 187 (234)
..+..++.+-+..|+..+++|+-+ ... |. ....++.|+|+-..-|.++ |++.. ..-+..|.++.-+
T Consensus 32 ~e~~~~~~~e~~~l~~~~~~le~~-----~lL~~~-~D~~~a~leI~aG~GG~Ea~~~a~~LlrMY~r~A~~~g~~~evi 105 (313)
T PRK08787 32 EDTALAVIADLDKYQAHVEKLEFQ-----RMFSGQ-MDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKTELM 105 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCc-cccCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 567788888888888888888732 222 32 2567889999876444221 33333 2334467776655
Q ss_pred EEeec--CcEEEEEEEEEEe
Q 026746 188 QAEFS--DQKLTAVLDIETQ 205 (234)
Q Consensus 188 ~ss~~--dg~l~~~lti~~k 205 (234)
+.+.. +|.-++++.|+..
T Consensus 106 ~~~~g~~~Giksa~l~I~G~ 125 (313)
T PRK08787 106 EVSGGEVAGIKSATVRIEGE 125 (313)
T ss_pred ecCCCCCceeeEEEEEEecc
Confidence 55543 4666766666653
No 144
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.10 E-value=1.4e+02 Score=20.54 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.+|+ +.+++++|.+.|+.+.-+.-++++-.++ +.|..
T Consensus 13 ~~~~--~~~i~~aL~~~~I~v~~i~~g~s~~sis--~~v~~ 49 (65)
T cd04918 13 SSLI--LERAFHVLYTKGVNVQMISQGASKVNIS--LIVND 49 (65)
T ss_pred CccH--HHHHHHHHHHCCCCEEEEEecCccceEE--EEEeH
Confidence 4577 9999999999999997766556665555 44443
No 145
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=28.91 E-value=1.2e+02 Score=22.87 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=23.5
Q ss_pred HHHhHHHHHhCCCCCCCCchhhhHHHHHH-HHHHHHH
Q 026746 96 ERQNYLALHSILPPGTKNDKNSIVKTTAN-MIHELQC 131 (234)
Q Consensus 96 ln~~f~~LrslvP~~~K~DKaSIL~~aI~-yIk~Le~ 131 (234)
+.+++..|.+- +-.-|+.++-+||+ ||.+.+.
T Consensus 16 ~~eRL~~Ls~~----tgrtkayyvrEaIE~~ieemED 48 (80)
T COG4710 16 LKERLDNLSKN----TGRTKAYYVREAIEAYIEEMED 48 (80)
T ss_pred HHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHHH
Confidence 45556666553 44579999999998 8888876
No 146
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=28.58 E-value=25 Score=27.08 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=8.1
Q ss_pred HHHHHHhHHHHHhCC
Q 026746 93 RERERQNYLALHSIL 107 (234)
Q Consensus 93 Rekln~~f~~Lrslv 107 (234)
-+.+|+++..|...+
T Consensus 51 ~~~l~~k~~~l~~~l 65 (99)
T PF10046_consen 51 LEDLNQKYEELQPYL 65 (99)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556665555544
No 147
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=28.05 E-value=3.6e+02 Score=26.54 Aligned_cols=65 Identities=12% Similarity=0.213 Sum_probs=43.7
Q ss_pred EEEEEECCCCChhHHHHHHHHHHhCCCeEEEEEEeecCcE-EEEEEEEEEecCCccCHHHHHHHHHHHHHhh
Q 026746 156 VRVNVDNPTSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK-LTAVLDIETQMGAGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 156 V~iei~C~r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~-l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~ 226 (234)
+.+.+.- ++|- |.+||+.++..|+.++.++|..+.+. ....+-|.+.... ...++++|.++-..|
T Consensus 19 LiFsL~d-~pGa--L~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~---~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 19 LIFSLKE-EAGA--LAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS---DRKLEGVIEHLRQKA 84 (436)
T ss_pred EEEEcCC-CCcH--HHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc---cHHHHHHHHHHHHhc
Confidence 4444422 6888 99999999999999999999865322 2223445554221 266788888776655
No 148
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.17 E-value=1.9e+02 Score=19.02 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
.+|+ +.+++++|.+.|+.+.-+.-+.++..++ ++|..
T Consensus 14 ~~~~--~~~i~~~L~~~~I~v~~i~q~~s~~~is--f~i~~ 50 (66)
T cd04924 14 TPGV--AGRVFGALGKAGINVIMISQGSSEYNIS--FVVAE 50 (66)
T ss_pred CccH--HHHHHHHHHHCCCCEEEEEecCccceEE--EEEeH
Confidence 4567 9999999999998886655444444444 45544
No 149
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=27.09 E-value=72 Score=23.43 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=26.8
Q ss_pred EeecCcEEEEEEEEEEecCC---ccCHHHHHHHHHHHHHh
Q 026746 189 AEFSDQKLTAVLDIETQMGA---GAVEKDVQRALQKVEDK 225 (234)
Q Consensus 189 ss~~dg~l~~~lti~~k~~~---~~~~~~Ik~aL~~v~~k 225 (234)
|.+.||-.. |.|+|.-.+ ...++||+.|--+++.+
T Consensus 10 srt~dGdYr--L~itcp~Ke~LlqSIEgmi~~~A~~vLRn 47 (71)
T PF11619_consen 10 SRTLDGDYR--LVITCPKKEWLLQSIEGMIKEAAVEVLRN 47 (71)
T ss_dssp EEETTTCEE--EEEEESSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eeccCCceE--EEEecCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 457899888 889885444 67789999998877764
No 150
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=26.70 E-value=1.4e+02 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLT 197 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~ 197 (234)
.+|+ +.+++++|.+.|+.+..+..+.++-.++
T Consensus 14 ~~gv--~~ki~~~L~~~~I~v~~i~~~~s~~~is 45 (66)
T cd04915 14 TPGV--LARGLAALAEAGIEPIAAHQSMRNVDVQ 45 (66)
T ss_pred cchH--HHHHHHHHHHCCCCEEEEEecCCeeEEE
Confidence 4577 9999999999999997665555544455
No 151
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.57 E-value=1.1e+02 Score=21.86 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhc
Q 026746 124 NMIHELQCCKQELERKNYELESNL 147 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~le~~s 147 (234)
+.|.+|+.++.+|+.+|..+....
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367788888888888877776653
No 152
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=26.31 E-value=89 Score=30.79 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=33.0
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEE
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLT 197 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~ 197 (234)
+.++|.|. |-|+ ..+||+-|-..++++.++..... |++.
T Consensus 1 mrl~~~~~dr~g~--~~~~l~~~~~~~~~~~~~e~~~~-~~~~ 40 (520)
T PRK10820 1 MRLEVFCEDRLGL--TRELLDLLVLRSIDLRGIEIDPI-GRIY 40 (520)
T ss_pred CeEEEEeeccccH--HHHHHHHHHhcCCCccEEEEcCC-CeEE
Confidence 36899999 9999 99999999999999999888554 4444
No 153
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=25.73 E-value=84 Score=23.27 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 026746 117 SIVKTTANMIHELQCCKQELER 138 (234)
Q Consensus 117 SIL~~aI~yIk~Le~~v~~Le~ 138 (234)
.+|..|-+.|..|+.++.+||+
T Consensus 57 ~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 57 AVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666777777777777764
No 154
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=25.62 E-value=3.1e+02 Score=21.00 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=43.0
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCCccCHHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~ 223 (234)
++.+.-. +|+. |.+||...+--|..+..++.|.. .|.....+++ .+.-+...+..-|.++-
T Consensus 5 qldl~ar~~pe~--leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV----~s~R~~~lL~~QLeKl~ 68 (86)
T COG3978 5 QLDLSARFNPET--LERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV----DSDRSVDLLTSQLEKLY 68 (86)
T ss_pred EEeeeccCChHH--HHHHHHHhhhcCeEEEEeecccccccccceEEEEE----cCCCChHHHHHHHHHHc
Confidence 3455555 8888 99999999999999999999875 4655533444 34556666666666553
No 155
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=24.94 E-value=1.5e+02 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEec
Q 026746 170 MLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQM 206 (234)
Q Consensus 170 l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~ 206 (234)
+-+=+..|++||.||-.+..++.++.-. ++|+.|+
T Consensus 21 i~~ri~rLN~LGFdV~El~~~~~~~g~~--~~i~p~V 55 (165)
T PF13224_consen 21 IEERIRRLNELGFDVGELEITTDDDGTR--LRIQPKV 55 (165)
T ss_pred HHHHHHHHHhcCCceeeeEeEEcCCCCE--EEEEeeE
Confidence 4455788999999999999988866555 6677764
No 156
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=24.82 E-value=2.2e+02 Score=18.90 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.6
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEe
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAE 190 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss 190 (234)
.+|. +.++++.|.+.|+.+..+..+
T Consensus 12 ~~g~--~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 12 KPGV--AAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCcH--HHHHHHHHHHcCCeEEEEEeC
Confidence 6788 999999999999988655433
No 157
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=24.00 E-value=4.9e+02 Score=24.77 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=42.1
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-C---cEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-D---QKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-d---g~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.+..+.+.+.=| +||- |.++++.+-..+-+++.++-.-. + +.+. +.|++ .+..-...|.++|.+
T Consensus 322 ~~r~~~~~v~ipdrPGa--L~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~--v~iE~--~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGA--LREFLNDVLGPNDDITRFEYTKKSNRETGPAL--IGIEL--NDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCH--HHHHHHHHhcCCCcEEEEEeeecCCCCeEEEE--EEEEe--CCHHHHHHHHHHHHH
Confidence 566778888888 9999 99999966666667776665421 1 2233 44555 444455667777765
No 158
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=23.91 E-value=3.7e+02 Score=26.73 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=43.6
Q ss_pred EEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEE-E-EEEEEEEecCCccCHHHHHHHHHHHHHhhhh
Q 026746 158 VNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKL-T-AVLDIETQMGAGAVEKDVQRALQKVEDKLLF 228 (234)
Q Consensus 158 iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l-~-~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~ 228 (234)
|-+.-+ ++|- |.+||+.++..|+.++.+.|..+.+.. . ..+-|.+.... ..++++|..+-..+..
T Consensus 34 LIFsL~d~pGa--L~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~----~~l~~aL~~Lk~~~~~ 101 (464)
T TIGR01270 34 IIFSLSNVVGD--LSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH----YGLQEAMDLLKSGLDV 101 (464)
T ss_pred EEEECCCCchH--HHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH----HHHHHHHHHHHHhccc
Confidence 333335 7888 999999999999999999998664332 1 23445554221 3578888777665443
No 159
>PRK08639 threonine dehydratase; Validated
Probab=23.74 E-value=4.7e+02 Score=24.92 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec----CcEEEEEEEEEEecCCccCHHHHHHHHHH
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS----DQKLTAVLDIETQMGAGAVEKDVQRALQK 221 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~----dg~l~~~lti~~k~~~~~~~~~Ik~aL~~ 221 (234)
.+..+.+.+.=| ++|- |.++++.+-.-+-+++.++-... .+.+. ++|++ .+..-...|.++|.+
T Consensus 333 ~~r~~~~~v~ipdrPGa--L~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~--v~iE~--~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGA--LREFLDDVLGPNDDITRFEYLKKNNRETGPVL--VGIEL--KDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCH--HHHHHHHHhcCCCcEEEEEEeecCCCCceEEE--EEEEe--CCHHHHHHHHHHHHH
Confidence 556777888888 9999 99999955555547776654422 12222 44454 454455667777765
No 160
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=23.61 E-value=3e+02 Score=20.18 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=28.4
Q ss_pred EEECCCCChhHHHHHHHHHHhC-CCeEEEEEEeecCcEEEEEEEEEEe
Q 026746 159 NVDNPTSGVDSMLEVLKCLKDL-GSSTRSIQAEFSDQKLTAVLDIETQ 205 (234)
Q Consensus 159 ei~C~r~gld~l~~Il~aL~~l-~Ldv~sv~ss~~dg~l~~~lti~~k 205 (234)
=|.| +|+- +-.+.++|..+ |.+++. ...+|.+. ++|++.
T Consensus 9 vV~~-~p~~--~~~v~~~l~~~~gvEVh~---~~~~GKiV--VtiE~~ 48 (79)
T PF03927_consen 9 VVHA-RPER--LEEVAEALAAIPGVEVHA---VDEDGKIV--VTIEAE 48 (79)
T ss_dssp EEEE--CCC--HHHHHHHHCCSTTEEEEE---EETTTEEE--EEEEES
T ss_pred EEEE-Cchh--HHHHHHHHHcCCCcEEEe---eCCCCeEE--EEEEeC
Confidence 3556 4677 89999999996 677763 44559888 889984
No 161
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.53 E-value=1.6e+02 Score=22.30 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 026746 119 VKTTANMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 119 L~~aI~yIk~Le~~v~~Le~~~~~le~ 145 (234)
+..||+-|.=||-.+++|..++..+..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888887655544
No 162
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=23.25 E-value=4.5e+02 Score=23.77 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=30.3
Q ss_pred EEEEECC-CCChhHHHHHHHHHHh-CCCeEEEEEEeecCc-EEEEEEEEEE
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKD-LGSSTRSIQAEFSDQ-KLTAVLDIET 204 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~-l~Ldv~sv~ss~~dg-~l~~~lti~~ 204 (234)
.|++.|. .+|++.+=++|.+..+ ...+-..|..+..+. +.. +++.+
T Consensus 179 ~ie~~~~~~dGi~~Ik~aL~~~~~~~~~~~~~v~i~~ig~P~Y~--i~~~~ 227 (262)
T PRK03987 179 YVDLTSPEPDGVEIIKKALKAAEKANKYEDVEVEIYYVGAPRYR--IDVTA 227 (262)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHhhcCCCCCcEEEEEECCCeEE--EEEEe
Confidence 4889999 8999888888888776 444433444554442 333 56666
No 163
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=22.75 E-value=2.5e+02 Score=19.02 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLT 197 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~ 197 (234)
.+|+ +.+++++|...|+.+. +.++++-.++
T Consensus 14 ~~gi--~~~if~aL~~~~I~v~--~~~~Se~~is 43 (64)
T cd04937 14 VPGV--MAKIVGALSKEGIEIL--QTADSHTTIS 43 (64)
T ss_pred CcCH--HHHHHHHHHHCCCCEE--EEEcCccEEE
Confidence 5688 9999999999999996 3444444444
No 164
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=22.44 E-value=2.8e+02 Score=22.41 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCeEEEEEEeec---CcEEEEEEEEEEecCCccCHHHHHHHHH
Q 026746 170 MLEVLKCLKDLGSSTRSIQAEFS---DQKLTAVLDIETQMGAGAVEKDVQRALQ 220 (234)
Q Consensus 170 l~~Il~aL~~l~Ldv~sv~ss~~---dg~l~~~lti~~k~~~~~~~~~Ik~aL~ 220 (234)
+-.++++|...|++|+.++.-.. ...+. +.+.+.-.-...+..++.||.
T Consensus 70 V~pvi~aL~~~GI~vtAlHNH~l~e~Prl~y--mH~~~~gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 70 VNPVISALRKNGIEVTALHNHWLFEQPRLFY--MHIWGVGDPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHCCceEEEEecccccCCCCEEE--EEEEecCCHHHHHHHHHHHHh
Confidence 67899999999999998887643 35677 788885444667777777775
No 165
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.32 E-value=1.4e+02 Score=20.07 Aligned_cols=22 Identities=36% Similarity=0.332 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh
Q 026746 124 NMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~le~ 145 (234)
.|+.+|+..+..|+..+..|..
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~ 46 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQ 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777766655543
No 166
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=1.9e+02 Score=23.15 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=27.4
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 026746 112 KNDKNSIVKTTANMIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 112 K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le~~ 146 (234)
..||+++-+.--.-.+.+++.++.|+.+.+-+|++
T Consensus 62 l~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~ 96 (114)
T KOG3501|consen 62 LSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKT 96 (114)
T ss_pred cCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45899998888888888888888888876666554
No 167
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=21.64 E-value=2.4e+02 Score=18.20 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=24.6
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEE
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIE 203 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~ 203 (234)
.+|+ +.+++++|...|+.+..+..+ +..++ ++|.
T Consensus 13 ~~~~--~~~i~~~L~~~~i~v~~i~~s--~~~is--~~v~ 46 (63)
T cd04936 13 HPGV--AAKMFEALAEAGINIEMISTS--EIKIS--CLID 46 (63)
T ss_pred CccH--HHHHHHHHHHCCCcEEEEEcc--CceEE--EEEe
Confidence 4677 999999999999999877643 33444 4444
No 168
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.41 E-value=2.2e+02 Score=17.86 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=20.6
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEe
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAE 190 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss 190 (234)
.+|. +.+++++|.+.|+.+..+..+
T Consensus 11 ~~~~--~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 11 KPGV--AAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCcH--HHHHHHHHHHcCCcEEEEEEc
Confidence 6788 999999999999888765443
No 169
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=20.85 E-value=1.2e+02 Score=22.88 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=41.4
Q ss_pred HHHHhHHHHHhCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc-CCCC--CCceEEEEEECC-CCChhHH
Q 026746 95 RERQNYLALHSILPPGTKNDKNSIVKTTANMIHELQCCKQELERKNYELESNL-GLKN--GGTKVRVNVDNP-TSGVDSM 170 (234)
Q Consensus 95 kln~~f~~LrslvP~~~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le~~s-g~~~--~~~~V~iei~C~-r~gld~l 170 (234)
+|++.+..|+.-|-.....| .++...++.|...++..-..-+...... +..+ ...-..+|...| =.++ +
T Consensus 1 kL~~~L~~L~~eL~~~~~ld-----~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~--l 73 (85)
T PF14357_consen 1 KLQELLEKLHQELEQNPPLD-----EETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEASHPKLAGI--L 73 (85)
T ss_pred CHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhCCcHHHH--H
Confidence 46677777777665544444 3444555555555544222100000000 0000 111123566676 4566 9
Q ss_pred HHHHHHHHhCCC
Q 026746 171 LEVLKCLKDLGS 182 (234)
Q Consensus 171 ~~Il~aL~~l~L 182 (234)
-.||+.|.++|+
T Consensus 74 r~i~~sLa~MGI 85 (85)
T PF14357_consen 74 RNIMDSLANMGI 85 (85)
T ss_pred HHHHHHHHHCCC
Confidence 999999999985
No 170
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.22 E-value=5.1e+02 Score=21.88 Aligned_cols=37 Identities=5% Similarity=0.149 Sum_probs=30.0
Q ss_pred CCceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe
Q 026746 152 GGTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE 190 (234)
Q Consensus 152 ~~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss 190 (234)
.+.||+|=|..+ ...- ++++++.+++.|..++.+.+.
T Consensus 110 ~~~Dv~i~iS~sG~t~~--~~~~~~~ak~~g~~iI~IT~~ 147 (197)
T PRK13936 110 QPGDVLLAISTSGNSAN--VIQAIQAAHEREMHVVALTGR 147 (197)
T ss_pred CCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECC
Confidence 467899999886 4444 999999999999999987653
No 171
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=20.16 E-value=3.8e+02 Score=20.85 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=29.5
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe--ecCcEEEEEEEEEEe
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE--FSDQKLTAVLDIETQ 205 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss--~~dg~l~~~lti~~k 205 (234)
-.|.+--. ++|+ |.+|--.+..-|..+.|.... ...|.-. +||-+.
T Consensus 9 ~tisvlv~N~pGV--L~RIaglFsRRgyNIeSLtvg~te~~~iSR--mtivv~ 57 (96)
T PRK08178 9 VILELTVRNHPGV--MSHVCGLFARRAFNVEGILCLPIQDGDKSR--IWLLVN 57 (96)
T ss_pred EEEEEEEECCcCH--HHHHHHHHhcCCcCeeeEEEeecCCCCceE--EEEEEc
Confidence 34555555 8999 999999998877655554444 3344444 556553
No 172
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=20.01 E-value=2.5e+02 Score=19.11 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 026746 120 KTTANMIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 120 ~~aI~yIk~Le~~v~~Le~~~~~le~~ 146 (234)
+.+-.+|+.|..+.+.+.++.+.+|..
T Consensus 19 ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 19 NKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466678999999888888888887754
Done!