Query 026746
Match_columns 234
No_of_seqs 210 out of 783
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 2.1E-17 7.3E-22 123.4 6.5 67 80-146 5-72 (82)
2 4h10_B Circadian locomoter out 99.6 9.9E-16 3.4E-20 111.8 5.9 61 78-138 5-66 (71)
3 1nkp_B MAX protein, MYC proto- 99.6 3.1E-15 1.1E-19 111.4 7.6 64 81-144 2-67 (83)
4 1hlo_A Protein (transcription 99.6 1.6E-15 5.6E-20 112.4 5.7 68 78-145 9-78 (80)
5 1nkp_A C-MYC, MYC proto-oncoge 99.6 2.6E-15 8.9E-20 113.6 6.0 61 79-139 4-67 (88)
6 1an4_A Protein (upstream stimu 99.5 2E-15 6.8E-20 107.7 2.9 55 79-133 3-63 (65)
7 1a0a_A BHLH, protein (phosphat 99.5 2.3E-15 7.7E-20 107.4 0.9 52 82-133 3-61 (63)
8 4ati_A MITF, microphthalmia-as 99.5 2.7E-14 9.2E-19 113.4 7.2 60 79-138 25-88 (118)
9 4h10_A ARYL hydrocarbon recept 99.5 6.3E-15 2.2E-19 108.0 2.6 52 80-131 8-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.4 2.8E-13 9.7E-18 100.8 8.3 63 82-144 2-67 (80)
11 3u5v_A Protein MAX, transcript 99.4 2E-13 6.7E-18 100.8 3.7 61 78-138 2-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.1 1E-10 3.5E-15 84.5 4.7 54 80-133 11-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 1.9E-10 6.6E-15 81.1 5.6 53 82-134 3-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 2.7E-10 9.2E-15 103.7 5.6 55 79-133 10-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.5E-09 5.3E-14 99.8 4.8 56 78-133 10-69 (387)
16 2lfh_A DNA-binding protein inh 98.6 7.9E-09 2.7E-13 74.5 1.3 44 88-131 21-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 3.8E-06 1.3E-10 62.6 6.7 46 93-138 4-53 (83)
18 4aya_A DNA-binding protein inh 98.0 1.2E-05 4.1E-10 61.6 5.9 48 88-135 32-82 (97)
19 1zpv_A ACT domain protein; str 97.6 0.0013 4.5E-08 47.5 11.3 68 154-225 4-72 (91)
20 1u8s_A Glycine cleavage system 96.2 0.028 9.6E-07 46.2 9.3 67 155-226 6-73 (192)
21 2nyi_A Unknown protein; protei 96.0 0.027 9.3E-07 46.8 8.6 69 153-226 91-166 (195)
22 2ko1_A CTR148A, GTP pyrophosph 95.9 0.024 8.3E-07 40.0 6.9 63 154-220 4-67 (88)
23 1u8s_A Glycine cleavage system 95.7 0.1 3.5E-06 42.7 10.8 70 153-226 91-169 (192)
24 2nyi_A Unknown protein; protei 95.4 0.083 2.8E-06 43.8 9.1 65 154-222 4-72 (195)
25 3n0v_A Formyltetrahydrofolate 94.7 0.21 7.1E-06 44.4 10.2 68 155-226 8-78 (286)
26 3p96_A Phosphoserine phosphata 94.7 0.11 3.8E-06 47.1 8.6 68 154-225 11-80 (415)
27 3o1l_A Formyltetrahydrofolate 94.1 0.31 1.1E-05 43.7 10.2 70 153-226 20-93 (302)
28 3lou_A Formyltetrahydrofolate 93.6 0.39 1.3E-05 42.8 9.9 69 154-226 9-83 (292)
29 3obi_A Formyltetrahydrofolate 93.5 0.46 1.6E-05 42.2 10.0 68 155-226 6-77 (288)
30 2jhe_A Transcription regulator 91.8 0.5 1.7E-05 36.8 7.1 59 157-222 2-61 (190)
31 3nrb_A Formyltetrahydrofolate 91.3 1 3.4E-05 40.0 9.3 68 154-226 6-76 (287)
32 2f1f_A Acetolactate synthase i 84.6 1.9 6.5E-05 35.2 6.1 62 157-223 5-69 (164)
33 2oqq_A Transcription factor HY 81.5 1.5 5.1E-05 28.3 3.3 23 124-146 3-25 (42)
34 2pc6_A Probable acetolactate s 79.1 3.2 0.00011 34.0 5.5 62 157-223 6-70 (165)
35 1y7p_A Hypothetical protein AF 78.0 4.5 0.00015 34.9 6.3 60 154-220 3-68 (223)
36 3luy_A Probable chorismate mut 77.6 14 0.00048 33.3 9.8 70 156-229 209-280 (329)
37 2wt7_A Proto-oncogene protein 73.8 10 0.00036 25.8 6.2 44 89-145 1-44 (63)
38 2qmx_A Prephenate dehydratase; 67.5 11 0.00039 33.1 6.6 61 164-228 210-271 (283)
39 2f06_A Conserved hypothetical 62.6 47 0.0016 25.1 8.6 42 159-204 76-118 (144)
40 1dh3_A Transcription factor CR 61.6 8.2 0.00028 25.9 3.5 22 124-145 22-43 (55)
41 2qmw_A PDT, prephenate dehydra 61.4 16 0.00055 31.9 6.3 60 164-228 199-259 (267)
42 3mwb_A Prephenate dehydratase; 58.8 14 0.00047 33.1 5.5 62 164-229 212-274 (313)
43 2fgc_A Acetolactate synthase, 58.6 22 0.00074 29.8 6.4 62 157-223 31-95 (193)
44 1zme_C Proline utilization tra 49.3 18 0.0006 24.2 3.7 23 124-146 44-66 (70)
45 2dgc_A Protein (GCN4); basic d 49.2 17 0.00058 25.0 3.5 24 123-146 29-52 (63)
46 1jnm_A Proto-oncogene C-JUN; B 45.7 21 0.00071 24.1 3.5 24 123-146 21-44 (62)
47 1gd2_E Transcription factor PA 43.2 23 0.0008 24.9 3.5 18 124-141 29-46 (70)
48 3he4_B Synzip5; heterodimeric 43.1 23 0.00079 22.5 3.1 19 120-138 6-24 (46)
49 1kd8_B GABH BLL, GCN4 acid bas 40.8 21 0.00073 22.1 2.6 21 125-145 2-22 (36)
50 1t2k_D Cyclic-AMP-dependent tr 39.0 30 0.001 23.2 3.5 22 124-145 22-43 (61)
51 2f06_A Conserved hypothetical 38.4 87 0.003 23.5 6.6 39 157-197 8-49 (144)
52 2oxj_A Hybrid alpha/beta pepti 35.9 29 0.00099 21.3 2.6 21 125-145 2-22 (34)
53 1kd8_A GABH AIV, GCN4 acid bas 35.4 20 0.00068 22.3 1.8 20 125-144 2-21 (36)
54 2er8_A Regulatory protein Leu3 35.3 19 0.00065 24.3 2.0 20 124-143 49-68 (72)
55 2lqj_A Mg2+ transport protein; 33.7 97 0.0033 22.6 5.8 44 153-196 6-51 (94)
56 2jee_A YIIU; FTSZ, septum, coi 32.4 61 0.0021 23.5 4.4 25 119-143 15-39 (81)
57 2re1_A Aspartokinase, alpha an 31.6 68 0.0023 25.1 5.0 48 153-202 23-73 (167)
58 3m48_A General control protein 31.1 32 0.0011 20.9 2.2 20 126-145 2-21 (33)
59 2akf_A Coronin-1A; coiled coil 30.4 67 0.0023 19.1 3.5 22 125-146 7-28 (32)
60 2wq1_A General control protein 29.5 43 0.0015 20.4 2.6 19 126-144 2-20 (33)
61 2dt9_A Aspartokinase; protein- 29.1 1.4E+02 0.0048 23.1 6.5 66 155-227 16-86 (167)
62 2rp4_A Transcription factor P5 28.5 32 0.0011 24.6 2.2 35 189-225 15-52 (76)
63 1pd7_B MAD1; PAH2, SIN3, eukar 28.4 70 0.0024 18.4 3.2 19 113-131 2-20 (26)
64 2cqn_A Formin-binding protein 28.2 71 0.0024 22.6 4.1 28 96-123 12-39 (77)
65 3c3f_A Alpha/beta peptide with 28.0 47 0.0016 20.3 2.6 21 125-145 2-22 (34)
66 1ci6_A Transcription factor AT 27.3 62 0.0021 21.9 3.5 21 125-145 24-44 (63)
67 2hy6_A General control protein 26.8 47 0.0016 20.3 2.4 21 125-145 2-22 (34)
68 3c3g_A Alpha/beta peptide with 26.6 52 0.0018 20.0 2.6 20 126-145 2-21 (33)
69 1uo4_A General control protein 26.3 48 0.0016 20.3 2.4 21 125-145 2-22 (34)
70 1phz_A Protein (phenylalanine 26.1 76 0.0026 29.7 5.0 68 155-228 36-105 (429)
71 1p3q_Q VPS9P, vacuolar protein 24.6 67 0.0023 21.5 3.2 24 87-110 3-26 (54)
72 2bni_A General control protein 24.3 55 0.0019 20.0 2.4 20 125-144 2-21 (34)
73 2dtj_A Aspartokinase; protein- 24.1 1.7E+02 0.0059 23.0 6.3 31 154-186 14-46 (178)
74 1xkm_B Distinctin chain B; por 23.4 87 0.003 17.6 2.9 19 116-134 3-21 (26)
75 1dip_A Delta-sleep-inducing pe 22.9 87 0.003 22.5 3.6 23 124-146 22-44 (78)
76 1yz7_A Probable translation in 22.6 1.9E+02 0.0064 23.8 6.3 46 157-204 94-143 (188)
77 2l5g_A GPS2 protein, G protein 22.3 1.5E+02 0.0051 18.5 4.5 28 113-140 4-31 (38)
78 2qn6_B Translation initiation 20.8 1.5E+02 0.005 21.7 4.7 46 157-204 9-60 (93)
79 2wuj_A Septum site-determining 20.5 97 0.0033 20.5 3.4 29 117-145 27-55 (57)
80 3gmg_A Uncharacterized protein 20.4 2.1E+02 0.0071 23.3 6.0 55 135-189 16-73 (170)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.69 E-value=2.1e-17 Score=123.40 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=62.1
Q ss_pred cccccchHHHHHHHHHHHHhHHHHHhCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 026746 80 ERGHRHVINERMRRERERQNYLALHSILPPG-TKNDKNSIVKTTANMIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 80 ~~~~~H~~sER~RRekln~~f~~LrslvP~~-~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le~~ 146 (234)
....+|.++||+||++||++|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+++.++..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999997 899999999999999999999999999988776653
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.60 E-value=9.9e-16 Score=111.79 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=55.7
Q ss_pred CccccccchHHHHHHHHHHHHhHHHHHhCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHh
Q 026746 78 DSERGHRHVINERMRRERERQNYLALHSILPPG-TKNDKNSIVKTTANMIHELQCCKQELER 138 (234)
Q Consensus 78 ~~~~~~~H~~sER~RRekln~~f~~LrslvP~~-~K~DKaSIL~~aI~yIk~Le~~v~~Le~ 138 (234)
+.....+|.++||+||++||+.|..|++|||.. .|+||++||..||+||+.|+..+..|+.
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 345678999999999999999999999999975 6999999999999999999999988863
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.58 E-value=3.1e-15 Score=111.44 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=57.0
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHhCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 026746 81 RGHRHVINERMRRERERQNYLALHSILPP--GTKNDKNSIVKTTANMIHELQCCKQELERKNYELE 144 (234)
Q Consensus 81 ~~~~H~~sER~RRekln~~f~~LrslvP~--~~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le 144 (234)
....|+.+||+||.+||+.|..|+++||. ..|.+|++||..||+||+.|+.+++.|+.+.+.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999997 48999999999999999999998888877654443
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=1.6e-15 Score=112.42 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=62.6
Q ss_pred CccccccchHHHHHHHHHHHHhHHHHHhCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 026746 78 DSERGHRHVINERMRRERERQNYLALHSILPPG--TKNDKNSIVKTTANMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 78 ~~~~~~~H~~sER~RRekln~~f~~LrslvP~~--~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le~ 145 (234)
.......|+.+||+||..||+.|..|+++||.. .|.+|++||..||+||+.|+.++++|+.+++.|++
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999999986 69999999999999999999999999998877765
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=2.6e-15 Score=113.59 Aligned_cols=61 Identities=26% Similarity=0.368 Sum_probs=55.4
Q ss_pred ccccccchHHHHHHHHHHHHhHHHHHhCCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHhh
Q 026746 79 SERGHRHVINERMRRERERQNYLALHSILPPG---TKNDKNSIVKTTANMIHELQCCKQELERK 139 (234)
Q Consensus 79 ~~~~~~H~~sER~RRekln~~f~~LrslvP~~---~K~DKaSIL~~aI~yIk~Le~~v~~Le~~ 139 (234)
.+....|+.+||+||.+||+.|..|+++||+. .|.+|++||..||+||++|+.+...+...
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999985 69999999999999999999998776653
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=2e-15 Score=107.67 Aligned_cols=55 Identities=25% Similarity=0.412 Sum_probs=50.0
Q ss_pred ccccccchHHHHHHHHHHHHhHHHHHhCCCCCC------CCchhhhHHHHHHHHHHHHHHH
Q 026746 79 SERGHRHVINERMRRERERQNYLALHSILPPGT------KNDKNSIVKTTANMIHELQCCK 133 (234)
Q Consensus 79 ~~~~~~H~~sER~RRekln~~f~~LrslvP~~~------K~DKaSIL~~aI~yIk~Le~~v 133 (234)
......|..+||+||++||+.|..|++|||... |+||++||..||+||++|+.+.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 346788999999999999999999999999875 7899999999999999999754
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.50 E-value=2.3e-15 Score=107.40 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=47.4
Q ss_pred cccchHHHHHHHHHHHHhHHHHHhCCCCC-------CCCchhhhHHHHHHHHHHHHHHH
Q 026746 82 GHRHVINERMRRERERQNYLALHSILPPG-------TKNDKNSIVKTTANMIHELQCCK 133 (234)
Q Consensus 82 ~~~H~~sER~RRekln~~f~~LrslvP~~-------~K~DKaSIL~~aI~yIk~Le~~v 133 (234)
..+|.++||+||++||..|..|++|||+. +|.+||+||+.||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999964 56679999999999999999765
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.50 E-value=2.7e-14 Score=113.40 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=50.7
Q ss_pred ccccccchHHHHHHHHHHHHhHHHHHhCCCCCC----CCchhhhHHHHHHHHHHHHHHHHHHHh
Q 026746 79 SERGHRHVINERMRRERERQNYLALHSILPPGT----KNDKNSIVKTTANMIHELQCCKQELER 138 (234)
Q Consensus 79 ~~~~~~H~~sER~RRekln~~f~~LrslvP~~~----K~DKaSIL~~aI~yIk~Le~~v~~Le~ 138 (234)
.....+|.++||+||++||++|..|++|||... |++|++||..||+||+.|+.+++.|+.
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999863 678999999999999999999999876
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.49 E-value=6.3e-15 Score=108.02 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=48.2
Q ss_pred cccccchHHHHHHHHHHHHhHHHHHhCCCCC----CCCchhhhHHHHHHHHHHHHH
Q 026746 80 ERGHRHVINERMRRERERQNYLALHSILPPG----TKNDKNSIVKTTANMIHELQC 131 (234)
Q Consensus 80 ~~~~~H~~sER~RRekln~~f~~LrslvP~~----~K~DKaSIL~~aI~yIk~Le~ 131 (234)
....+|.++||+||++||+.|..|++|||.. +|+||++||+.||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4577899999999999999999999999965 799999999999999999974
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=2.8e-13 Score=100.76 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=55.9
Q ss_pred cccchHHHHHHHHHHHHhHHHHHhCCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 026746 82 GHRHVINERMRRERERQNYLALHSILPPG---TKNDKNSIVKTTANMIHELQCCKQELERKNYELE 144 (234)
Q Consensus 82 ~~~H~~sER~RRekln~~f~~LrslvP~~---~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le 144 (234)
...|+..||+||..||++|..|+++||.. .|..|++||..|++||+.|+.+.+.+....+.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999965 6889999999999999999999988887655443
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.38 E-value=2e-13 Score=100.79 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=49.0
Q ss_pred CccccccchHHHHHHHHHHHHhHHHHHhCCCC---CCCC-chhhhHHHHHHHHHHHHHHHHHHHh
Q 026746 78 DSERGHRHVINERMRRERERQNYLALHSILPP---GTKN-DKNSIVKTTANMIHELQCCKQELER 138 (234)
Q Consensus 78 ~~~~~~~H~~sER~RRekln~~f~~LrslvP~---~~K~-DKaSIL~~aI~yIk~Le~~v~~Le~ 138 (234)
+.+....|...||+||..||+.|..||.+||. ..|. .|++||..||+||+.|++++++++.
T Consensus 2 ~~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 2 GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred chhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999995 3455 6888999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.07 E-value=1e-10 Score=84.47 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=49.4
Q ss_pred cccccchHHHHHHHHHHHHhHHHHHhCCCCC--CCCchhhhHHHHHHHHHHHHHHH
Q 026746 80 ERGHRHVINERMRRERERQNYLALHSILPPG--TKNDKNSIVKTTANMIHELQCCK 133 (234)
Q Consensus 80 ~~~~~H~~sER~RRekln~~f~~LrslvP~~--~K~DKaSIL~~aI~yIk~Le~~v 133 (234)
.....|...||+|+..||+.|..||.+||.. .|..|+.||..||+||..|+..+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999974 78999999999999999999754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.06 E-value=1.9e-10 Score=81.09 Aligned_cols=53 Identities=19% Similarity=0.119 Sum_probs=48.0
Q ss_pred cccchHHHHHHHHHHHHhHHHHHhCCCCC---CCCchhhhHHHHHHHHHHHHHHHH
Q 026746 82 GHRHVINERMRRERERQNYLALHSILPPG---TKNDKNSIVKTTANMIHELQCCKQ 134 (234)
Q Consensus 82 ~~~H~~sER~RRekln~~f~~LrslvP~~---~K~DKaSIL~~aI~yIk~Le~~v~ 134 (234)
...|...||+|+..||+.|..||.+||.. .|..|+.||..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999975 589999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.00 E-value=2.7e-10 Score=103.65 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=43.1
Q ss_pred ccccccchHHHHHHHHHHHHhHHHHHhCCC-CCCCCchhhhHHHHHHHHHHHHHHH
Q 026746 79 SERGHRHVINERMRRERERQNYLALHSILP-PGTKNDKNSIVKTTANMIHELQCCK 133 (234)
Q Consensus 79 ~~~~~~H~~sER~RRekln~~f~~LrslvP-~~~K~DKaSIL~~aI~yIk~Le~~v 133 (234)
......|.++||+||++||+.|..|++||| ...|+||+|||..||.||+.|+...
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 356788999999999999999999999999 5589999999999999999998653
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.85 E-value=1.5e-09 Score=99.85 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=50.0
Q ss_pred CccccccchHHHHHHHHHHHHhHHHHHhCCC----CCCCCchhhhHHHHHHHHHHHHHHH
Q 026746 78 DSERGHRHVINERMRRERERQNYLALHSILP----PGTKNDKNSIVKTTANMIHELQCCK 133 (234)
Q Consensus 78 ~~~~~~~H~~sER~RRekln~~f~~LrslvP----~~~K~DKaSIL~~aI~yIk~Le~~v 133 (234)
......+|..+||+||++||+.|..|++||| ...|+||+|||..||.||+.|+...
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 3456889999999999999999999999999 5689999999999999999998543
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.61 E-value=7.9e-09 Score=74.49 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhHHHHHhCCCCC---CCCchhhhHHHHHHHHHHHHH
Q 026746 88 NERMRRERERQNYLALHSILPPG---TKNDKNSIVKTTANMIHELQC 131 (234)
Q Consensus 88 sER~RRekln~~f~~LrslvP~~---~K~DKaSIL~~aI~yIk~Le~ 131 (234)
.||+|+..||+.|..||.+||.. .|..|+.||.-||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 37999999999999999999975 788999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.17 E-value=3.8e-06 Score=62.64 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=40.4
Q ss_pred HHHHHHhHHHHHhCCCCC----CCCchhhhHHHHHHHHHHHHHHHHHHHh
Q 026746 93 RERERQNYLALHSILPPG----TKNDKNSIVKTTANMIHELQCCKQELER 138 (234)
Q Consensus 93 Rekln~~f~~LrslvP~~----~K~DKaSIL~~aI~yIk~Le~~v~~Le~ 138 (234)
|..||+++..|..|||.. .|..|.+||..|++||+.|++..+.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999964 5789999999999999999987765544
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.96 E-value=1.2e-05 Score=61.61 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhHHHHHhCCCCC---CCCchhhhHHHHHHHHHHHHHHHHH
Q 026746 88 NERMRRERERQNYLALHSILPPG---TKNDKNSIVKTTANMIHELQCCKQE 135 (234)
Q Consensus 88 sER~RRekln~~f~~LrslvP~~---~K~DKaSIL~~aI~yIk~Le~~v~~ 135 (234)
.||.|-..+|+.|..||.+||.. .|..|+-+|.-||+||..|+.-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 36888899999999999999964 6889999999999999999987764
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.56 E-value=0.0013 Score=47.51 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=56.4
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHh
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDK 225 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k 225 (234)
..+.|.|.|+ ++|+ +.+|...|.+.|..+.+++....+|.+. +++...+.+......|..+|.++...
T Consensus 4 ~~~~l~v~~~DrpGi--la~vt~~la~~~~NI~~i~~~~~~~~~~--~~i~v~~~~~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 4 MKAIITVVGKDKSGI--VAGVSGKIAELGLNIDDISQTVLDEYFT--MMAVVSSDEKQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEEESCCTTH--HHHHHHHHHHTTCEEEEEEEEEETTEEE--EEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCH--HHHHHHHHHHcCCCEEEEEeEEEcCEEE--EEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4578999999 9999 9999999999999999998887778877 44444555556788999999988765
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.16 E-value=0.028 Score=46.16 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=53.8
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHhh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~ 226 (234)
...|.|.|+ ++|+ +.+|...|...|++++.++..+..|.+. +++...... .....|+++|.+++...
T Consensus 6 ~~~itv~~~DrpGi--va~vt~~La~~g~NI~d~~~~~~~~~f~--~~~~v~~~~-~~~~~l~~~L~~~~~~~ 73 (192)
T 1u8s_A 6 HLVITAVGTDRPGI--CNEVVRLVTQAGCNIIDSRIAMFGKEFT--LLMLISGSP-SNITRVETTLPLLGQQH 73 (192)
T ss_dssp EEEEEEEEECCTTH--HHHHHHHHHHTTCEEEEEEEEEETTEEE--EEEEEEECH-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcH--HHHHHHHHHHCCCCEEeeeeeecCCceE--EEEEEecCC-CCHHHHHHHHHHHHHhc
Confidence 477999999 9999 9999999999999999988888888888 455444332 35678888888877543
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.00 E-value=0.027 Score=46.78 Aligned_cols=69 Identities=17% Similarity=0.293 Sum_probs=53.7
Q ss_pred CceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC------cEEEEEEEEEEecCCccCHHHHHHHHHHHHHh
Q 026746 153 GTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD------QKLTAVLDIETQMGAGAVEKDVQRALQKVEDK 225 (234)
Q Consensus 153 ~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d------g~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k 225 (234)
.....|+|.|+ ++|+ +.+|-..|-++|+.+..++..+.+ +.|. +++......... ..++.+|..+...
T Consensus 91 ~~~~iltv~g~DrpGi--va~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~--m~~~~~~~~~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 91 TREYELYVEGPDSEGI--VEAVTAVLAKKGANIVELETETLPAPFAGFTLFR--MGSRVAFPFPLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEEEECCTTH--HHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEE--EEEEEEEEGGGH-HHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCcCH--HHHHHHHHHHcCCCEEEceeeecccccCCCCeEE--EEEEEEcCCCcc-HHHHHHHHHHHHH
Confidence 44688999999 9999 999999999999999988877654 6777 444443333334 8899999988765
Q ss_pred h
Q 026746 226 L 226 (234)
Q Consensus 226 ~ 226 (234)
.
T Consensus 166 l 166 (195)
T 2nyi_A 166 F 166 (195)
T ss_dssp H
T ss_pred c
Confidence 4
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.91 E-value=0.024 Score=40.00 Aligned_cols=63 Identities=8% Similarity=0.102 Sum_probs=44.2
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHH
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQ 220 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~ 220 (234)
..+.|.|.++ ++|+ |.+|...|.+.|+.+.++.....++ .+.+.+.....+......+.++|+
T Consensus 4 ~~~~l~v~~~Dr~G~--L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~ 67 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGM--TNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLR 67 (88)
T ss_dssp EEEEEEEEEECCTTH--HHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEEEEEECCCcH--HHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHh
Confidence 3567888888 9999 9999999999999999988887666 333555554444333334444443
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.71 E-value=0.1 Score=42.69 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=54.3
Q ss_pred CceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecC--------cEEEEEEEEEEecCCccCHHHHHHHHHHHH
Q 026746 153 GTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSD--------QKLTAVLDIETQMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 153 ~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~d--------g~l~~~lti~~k~~~~~~~~~Ik~aL~~v~ 223 (234)
.....|.|.|+ ++|+ +.+|.+.|.+.|+++..+...+.+ +.+. +++............++.+|..+.
T Consensus 91 ~~~~~l~v~~~D~~Gi--l~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~--~~~~~~~~~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 91 AYTVEVYVESDDKLGL--TEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFH--IAISARVDSGCNLMQLQEEFDALC 166 (192)
T ss_dssp SEEEEEEEEESCCTTH--HHHHHHHHHHTTCCEEEEEEEEEC--------CEEE--EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCCccH--HHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEE--EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35678999999 9999 999999999999999988776543 4566 444444434557889999999887
Q ss_pred Hhh
Q 026746 224 DKL 226 (234)
Q Consensus 224 ~k~ 226 (234)
...
T Consensus 167 ~~~ 169 (192)
T 1u8s_A 167 TAL 169 (192)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.36 E-value=0.083 Score=43.79 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=49.9
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCc---cCHHHHHHHHHHH
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAG---AVEKDVQRALQKV 222 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~---~~~~~Ik~aL~~v 222 (234)
..+.|.|.|+ ++|+ +..|...|..+|+.++.++..+..|.+. +++.....+. .....|+++|..+
T Consensus 4 ~~~~ltv~~~DrpGi--va~vs~~La~~g~NI~da~q~~~~~~f~--m~~~v~~~~~~~~~~~~~l~~~L~~~ 72 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGI--VHDFSWALKNISANVESSRMACLGGDFA--MIVLVSLNAKDGKLIQSALESALPGF 72 (195)
T ss_dssp EEEEEEEEEECCTTH--HHHHHHHHHHTTCEEEEEEEEEETTEEE--EEEEEEESSSSSHHHHHHHHHHSTTC
T ss_pred eEEEEEEEeCCCCcH--HHHHHHHHHHCCCCEEEEEeEEECCeEE--EEEEEEecCccchhHHHHHHHHHHHH
Confidence 4578999999 9999 9999999999999999999988888888 4454443332 1156677666544
No 25
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=94.65 E-value=0.21 Score=44.42 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=55.6
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe--ecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHhh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE--FSDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss--~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~ 226 (234)
...|.+.|+ ++|+ +..|-..|-+.|..+..++.+ ...|.|. +.++....+......++++|..+....
T Consensus 8 ~~vLtv~c~DrpGI--Va~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~~~~~~~L~~~f~~la~~l 78 (286)
T 3n0v_A 8 TWILTADCPSMLGT--VDVVTRYLFEQRCYVTEHHSFDDRQSGRFF--IRVEFRQPDDFDEAGFRAGLAERSEAF 78 (286)
T ss_dssp CEEEEEEEECCTTH--HHHHHHHHHHTTCEEEEEEEEEETTTTEEE--EEEEEECCSSCCHHHHHHHHHHHHGGG
T ss_pred cEEEEEEeCCCCCH--HHHHHHHHHHCCCCeeeeeeeccCCCCeeE--EEEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 477999999 9999 999999999999999987776 3468888 566665554567899999999886643
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=94.65 E-value=0.11 Score=47.12 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=55.7
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCC-ccCHHHHHHHHHHHHHh
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGA-GAVEKDVQRALQKVEDK 225 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~v~~k 225 (234)
..++|.+.|+ |+|+ +..|...|-+.|..++.++.+...|.|+ +.+.....+ ......++.+|..+...
T Consensus 11 ~~~~lt~~g~Dr~Gi--v~~vs~~l~~~~~nI~d~~q~~~~~~f~--~~~~~~~~~~~~~~~~l~~~l~~~~~~ 80 (415)
T 3p96_A 11 VSVLITVTGVDQPGV--TATLFEVLSRHGVELLNVEQVVIRHRLT--LGVLVCCPADVADGPALRHDVEAAIRK 80 (415)
T ss_dssp EEEEEEEEEECCTTH--HHHHHHHHTTTTCEEEEEEEEEETTEEE--EEEEEEECHHHHTSHHHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCH--HHHHHHHHHHCCCCEEEeeeEEECCEeE--EEEEEEecCCcCCHHHHHHHHHHHHHH
Confidence 4678999999 9999 9999999999999999988888889998 556555544 22557899999887654
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=94.13 E-value=0.31 Score=43.71 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=56.8
Q ss_pred CceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCC-ccCHHHHHHHHHHHHHhh
Q 026746 153 GTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGA-GAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 153 ~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~v~~k~ 226 (234)
.....+.+.|+ ++|+ +.+|-..|-+.|..++.++.+.. .|.|. +.++....+ ......++++|..+....
T Consensus 20 ~~~~iLtv~c~DrpGI--Va~VS~~La~~g~NI~d~~q~~d~~~g~Ff--Mr~~~~~~~~~~~~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 20 MRTFRLVIACPDRVGI--VAKVSNFLASHNGWITEASHHSDNLSGWFF--MRHEIRADTLPFDLDGFREAFTPIAEEF 93 (302)
T ss_dssp CCEEEEEEEEECCTTH--HHHHHHHHHHTTCCEEEEEEEEETTTTEEE--EEEEEEGGGSSSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECCCCCCH--HHHHHHHHHHCCCCEEEeeEEecCCCCeEE--EEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 34578999999 9999 99999999999999998777643 68888 666666554 467899999998887653
No 28
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=93.65 E-value=0.39 Score=42.77 Aligned_cols=69 Identities=9% Similarity=0.144 Sum_probs=54.3
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe--ecCcEEEEEEEEEEecC--C-ccCHHHHHHHHHHHHHhh
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE--FSDQKLTAVLDIETQMG--A-GAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss--~~dg~l~~~lti~~k~~--~-~~~~~~Ik~aL~~v~~k~ 226 (234)
....+.+.|+ ++|+ +.+|-..|-+.|..+..++.. ...|.|. +.++.... + ......++++|..+....
T Consensus 9 ~~~vLtv~c~Dr~GI--Va~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~~~~~~~~~~L~~~f~~la~~~ 83 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQ--VAAVVGLLDRHRCYVDELTVFDDDLSARFF--VRCVFHATDDADALRVDALRREFEPIAERF 83 (292)
T ss_dssp CEEEEEEEEESCSCH--HHHHHHHHHHTTEEEEEEEEEEETTTTEEE--EEEEEEECC----CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCH--HHHHHHHHHHCCCCEEeeEEEecCCCCceE--EEEEEEccCcccCCCHHHHHHHHHHHHHhc
Confidence 3577999999 9999 999999999999999987776 3468888 55555444 4 467889999998887643
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=93.48 E-value=0.46 Score=42.18 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=55.1
Q ss_pred eEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe--ecCcEEEEEEEEEEecCC-ccCHHHHHHHHHHHHHhh
Q 026746 155 KVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE--FSDQKLTAVLDIETQMGA-GAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 155 ~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss--~~dg~l~~~lti~~k~~~-~~~~~~Ik~aL~~v~~k~ 226 (234)
...|.+.|+ ++|+ +.+|-..|-+.|..+..++.. ...|.|. +.+.....+ ......++++|..+....
T Consensus 6 ~~iLtv~g~DrpGI--Va~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~~~~~~~~L~~~f~~la~~~ 77 (288)
T 3obi_A 6 QYVLTLSCPDRAGI--VSAVSTFLFENGQNILDAQQYNDTESGHFF--MRVVFNAAAKVIPLASLRTGFGVIAAKF 77 (288)
T ss_dssp EEEEEEEEECCTTH--HHHHHHHHHHTTEEEEEEEEEEETTTTEEE--EEEEEEESSCCCCHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCCH--HHHHHHHHHHCCCcEEeeeeeecCCCCceE--EEEEEEcCCCCCCHHHHHHHHHHHHHHc
Confidence 467999999 9999 999999999999999987764 3468888 556665555 467899999999887643
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=91.78 E-value=0.5 Score=36.79 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=42.2
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEEecCCccCHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIETQMGAGAVEKDVQRALQKV 222 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v 222 (234)
.|+|.|. |.|+ +.+|++.|.+.++++.+++.... |.+. +++. .......+.+.+.|.++
T Consensus 2 ~~~v~~~dr~g~--l~~i~~~l~~~~~ni~~~~~~~~-g~i~--~~~~--~~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 2 RLEVFCEDRLGL--TRELLDLLVLRGIDLRGIEIDPI-GRIY--LNFA--ELEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEEECSCTTH--HHHHHHHHHHTTCCEEEEEEETT-TEEE--EEEC--CCCHHHHHHHHHHHHHS
T ss_pred EEEEEEecCCcH--HHHHHHHHHHcCCCeEEEEEecC-CEEE--EEEE--eCCHHHHHHHHHHHHcC
Confidence 5889999 9999 99999999999999999988655 6644 3443 22333344455555544
No 31
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=91.25 E-value=1 Score=39.97 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=51.5
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe--ecCcEEEEEEEEEEecCCccCHHHHHHHHHHHHHhh
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE--FSDQKLTAVLDIETQMGAGAVEKDVQRALQKVEDKL 226 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss--~~dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~ 226 (234)
....|.+.|+ ++|+ +.+|-..|-+.|..++.++.. ...|.|. +.++....+ .....++++|..+....
T Consensus 6 ~~~vLtv~c~Dr~GI--Va~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~-~~~~~L~~~f~~la~~~ 76 (287)
T 3nrb_A 6 NQYVLSLACQDAPGI--VSEVSTFLFNNGANIVEAEQFNDEDSSKFF--MRVSVEIPV-AGVNDFNSAFGKVVEKY 76 (287)
T ss_dssp TEEEEEEEEECCTTH--HHHHHHHHHHTTCEEEEEEEEEETTTTEEE--EEEEEECCC----CHHHHHHHHHHGGG
T ss_pred CeEEEEEECCCCCCH--HHHHHHHHHHCCCCEEeeeeeecCCCCeEE--EEEEEEcCC-CCHHHHHHHHHHHHHHc
Confidence 3578999999 9999 999999999999999987664 3468888 556655443 12348999998876643
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=84.63 E-value=1.9 Score=35.22 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=42.9
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCCccCHHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~ 223 (234)
.|.|..+ ++|+ |.+|...+...|..+.|+..... +|... +++... .+......|...|.+++
T Consensus 5 ~IsV~v~NrpGv--LarIt~lfs~rg~NI~Sl~v~~t~d~~~sr--iti~V~-~d~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 5 ILSVLLENESGA--LSRVIGLFSQRGYNIESLTVAPTDDPTLSR--MTIQTV-GDEKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEECCTTH--HHHHHHHHHTTTCCCSEEEEEECSCSSEEE--EEEEEE-SCHHHHHHHHHHHHHST
T ss_pred EEEEEEeCCCcH--HHHHHHHHHHCCCCeeeceeeecCCCCEEE--EEEEEe-ccHHHHHHHHHHHcCCC
Confidence 4666676 9999 99999999999988877776543 36555 566655 33445555666666554
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.55 E-value=1.5 Score=28.34 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh
Q 026746 124 NMIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~le~~ 146 (234)
.|+.+|+.++.+|+.++.+||..
T Consensus 3 aYl~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 38888888888888877777654
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=79.06 E-value=3.2 Score=33.98 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=41.4
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec--CcEEEEEEEEEEecCCccCHHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS--DQKLTAVLDIETQMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~--dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~ 223 (234)
.|.|..+ ++|+ |.+|...+...|..+.|+..... +|... ++|... .+......|...|.+++
T Consensus 6 ~IsV~veNrpGv--L~rI~~lfs~rg~NI~Sl~v~~t~d~g~sr--itivV~-~d~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 6 IISLLMENEAGA--LSRVAGLFSARGYNIESLSVAPTEDPTLSR--MTLVTN-GPDEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEECSTTH--HHHHHHHHHHHTCCCCEEEEEECSSTTEEE--EEEEEE-ECHHHHHHHHHHHHHST
T ss_pred EEEEEEeCCCcH--HHHHHHHHHHCCCcEEEEEEEecCCCCEEE--EEEEEe-ccHHHHHHHHHHhcCCC
Confidence 4566666 9999 99999999998888777666533 47655 555554 22344555555566554
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=77.99 E-value=4.5 Score=34.90 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=39.5
Q ss_pred ceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeec-----CcEEEEEEEEEEecCCccCHHHHHHHHH
Q 026746 154 TKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS-----DQKLTAVLDIETQMGAGAVEKDVQRALQ 220 (234)
Q Consensus 154 ~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~-----dg~l~~~lti~~k~~~~~~~~~Ik~aL~ 220 (234)
..+.|.|.+. |+|+ |.+|+..|.+.+..+.+++.+.. +|... ++|+. .+. ....+-+.|+
T Consensus 3 ~~VtL~I~a~DRpGL--LsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~--I~IEV--~d~-~Le~LL~kLr 68 (223)
T 1y7p_A 3 MLRGLRIIAENKIGV--LRDLTTIIAEEGGNITFAQTFLIKHGEHEGKAL--IYFEI--EGG-DFEKILERVK 68 (223)
T ss_dssp -CEEEEEEEECCTTH--HHHHHHHCC----CEEEEEEEECCSSTTTTEEE--EEEEE--CSS-CHHHHHHHHH
T ss_pred ceEEEEEEEcCCCCH--HHHHHHHHHHcCCCceEEEEEccccCCcCCEEE--EEEEE--CCC-CHHHHHHHHh
Confidence 3577888888 9999 99999999999999999999875 45544 55554 333 4444444443
No 36
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=77.60 E-value=14 Score=33.30 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=50.9
Q ss_pred EEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEE-EEEEEEEEecCCccCHHHHHHHHHHHHHhhhhh
Q 026746 156 VRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKL-TAVLDIETQMGAGAVEKDVQRALQKVEDKLLFR 229 (234)
Q Consensus 156 V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l-~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~~ 229 (234)
+++.+.-. ++|- |.++|..+...|++.+.++|.-..+.+ .+.+-|.. .|-.....|++||.++...|.+.
T Consensus 209 ~i~~~~~~~~pGa--L~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~~~d~~v~~AL~~L~~~~~~~ 280 (329)
T 3luy_A 209 VLTLIPLVTGPGV--LANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAAPWEERFRDALVEIAEHGDWA 280 (329)
T ss_dssp EEEEECSCCSTTH--HHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSCTTSHHHHHHHHHHHHTTCEE
T ss_pred EEEEecCCCCCCH--HHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCCcCCHHHHHHHHHHHHhCCeE
Confidence 33444332 6898 999999999999999999999776554 34444444 44444578999999998887643
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.78 E-value=10 Score=25.84 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHHHHHhCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 026746 89 ERMRRERERQNYLALHSILPPGTKNDKNSIVKTTANMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 89 ER~RRekln~~f~~LrslvP~~~K~DKaSIL~~aI~yIk~Le~~v~~Le~~~~~le~ 145 (234)
||++|.+...+..+-++- ..-.+|+.+|+.+++.|+..|..|..
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665666667777661 22346888888888888887766554
No 38
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=67.51 E-value=11 Score=33.14 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcE-EEEEEEEEEecCCccCHHHHHHHHHHHHHhhhh
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK-LTAVLDIETQMGAGAVEKDVQRALQKVEDKLLF 228 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~-l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~ 228 (234)
++|- |.++|..+...|++.+.++|.-..+. ..+.+-|... |......+++||.++...|.+
T Consensus 210 ~pGa--L~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e--g~~~d~~v~~aL~~L~~~~~~ 271 (283)
T 2qmx_A 210 EQGS--LFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI--GHREDQNVHNALENLREFATM 271 (283)
T ss_dssp CTTH--HHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE--SCTTSHHHHHHHHHHHTTCSE
T ss_pred CCch--HHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe--cCCCcHHHHHHHHHHHHhcCe
Confidence 8999 99999999999999999999866432 1222444443 223346789999999887754
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=62.62 E-value=47 Score=25.09 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=29.1
Q ss_pred EEECC-CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEEEEEEEEEE
Q 026746 159 NVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKLTAVLDIET 204 (234)
Q Consensus 159 ei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l~~~lti~~ 204 (234)
-+..+ ++|. +.+++++|.+.|+.+..+-++..++... +.++.
T Consensus 76 ~v~~~d~pGv--la~i~~~L~~~~InI~~~~~~~~~~~~~--~~i~~ 118 (144)
T 2f06_A 76 GISCPNVPGA--LAKVLGFLSAEGVFIEYMYSFANNNVAN--VVIRP 118 (144)
T ss_dssp EEEEESSTTH--HHHHHHHHHHTTCCEEEEEEEEETTEEE--EEEEE
T ss_pred EEEeCCCCcH--HHHHHHHHHHCCCCEEEEEEEccCCcEE--EEEEe
Confidence 33344 8999 9999999999999996644442455544 44444
No 40
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.58 E-value=8.2 Score=25.86 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh
Q 026746 124 NMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~le~ 145 (234)
.|+.+|+.+|..|+..|..|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998776654
No 41
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=61.42 E-value=16 Score=31.93 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=45.1
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEE-EEEEEEEEecCCccCHHHHHHHHHHHHHhhhh
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKL-TAVLDIETQMGAGAVEKDVQRALQKVEDKLLF 228 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l-~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~ 228 (234)
++|- |.++|..+...|++.+.++|.-..+.+ .+.+-|... + .....|++||.++...+.+
T Consensus 199 ~pGa--L~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~--~~d~~v~~aL~~L~~~~~~ 259 (267)
T 2qmw_A 199 KPGL--LASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S--AITTDIKKVIAILETLDFK 259 (267)
T ss_dssp CTTH--HHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C--CSCHHHHHHHHHHHHTTEE
T ss_pred CcCh--HHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c--CCcHHHHHHHHHHHHhcCe
Confidence 8999 999999999999999999998664321 222455554 2 2336789999999887754
No 42
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=58.81 E-value=14 Score=33.15 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHHhCCCeEEEEEEeecCcEE-EEEEEEEEecCCccCHHHHHHHHHHHHHhhhhh
Q 026746 164 TSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQKL-TAVLDIETQMGAGAVEKDVQRALQKVEDKLLFR 229 (234)
Q Consensus 164 r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~l-~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~~~ 229 (234)
++|- |.++|..+...|++.+.++|.-..+.+ .+.+-|... |-.....+++||.++...|.+.
T Consensus 212 ~pGa--L~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--g~~~d~~v~~aL~~L~~~~~~~ 274 (313)
T 3mwb_A 212 HPGA--LMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD--GHATDSRVADALAGLHRISPAT 274 (313)
T ss_dssp CTTH--HHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE--SCTTSHHHHHHHHHHHHHCTTC
T ss_pred CCCH--HHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe--CCCCcHHHHHHHHHHHHhcCcE
Confidence 7899 999999999999999999998654322 122344432 2234467899999998877643
No 43
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=58.63 E-value=22 Score=29.84 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=42.4
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe-ecC-cEEEEEEEEEEecCCccCHHHHHHHHHHHH
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE-FSD-QKLTAVLDIETQMGAGAVEKDVQRALQKVE 223 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss-~~d-g~l~~~lti~~k~~~~~~~~~Ik~aL~~v~ 223 (234)
.|.|..+ ++|. |.+|...+...|..+.|+... +.| |... ++|.+.-. ......|...|.+++
T Consensus 31 ~LsVlVeN~pGv--LaRItglfsrRG~NI~SLtV~~ted~gisR--itIvV~g~-e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 31 LVSMLVHNKPGV--MRKVANLFARRGFNISSITVGESETPGLSR--LVIMVKGD-DKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEECCTTH--HHHHHHHHHTTTCEEEEEEEEECSSTTEEE--EEEEEEEC-TTHHHHHHHHHTTST
T ss_pred EEEEEECCCChH--HHHHHHHHHHCCceEEEEEeeccCCCCEEE--EEEEEECC-HHHHHHHHHHhcCcC
Confidence 4566666 8999 999999999999998877665 333 6656 55555322 345566666666654
No 44
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=49.34 E-value=18 Score=24.18 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh
Q 026746 124 NMIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~le~~ 146 (234)
.||..|+.+++.|+.....++..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888877666553
No 45
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=49.16 E-value=17 Score=24.97 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhh
Q 026746 123 ANMIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 123 I~yIk~Le~~v~~Le~~~~~le~~ 146 (234)
.+|+.+|+.+++.|+..|..|...
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999888776653
No 46
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=45.71 E-value=21 Score=24.14 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhh
Q 026746 123 ANMIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 123 I~yIk~Le~~v~~Le~~~~~le~~ 146 (234)
.+|+.+|+.+++.|+..+..|...
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~ 44 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAST 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888888888877666543
No 47
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.24 E-value=23 Score=24.94 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 026746 124 NMIHELQCCKQELERKNY 141 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~ 141 (234)
.||++|+.+|.+|+..+.
T Consensus 29 ~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 599999999999887543
No 48
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=43.12 E-value=23 Score=22.49 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026746 120 KTTANMIHELQCCKQELER 138 (234)
Q Consensus 120 ~~aI~yIk~Le~~v~~Le~ 138 (234)
.+--+||++|+++-.+|..
T Consensus 6 kelknyiqeleernaelkn 24 (46)
T 3he4_B 6 KELKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHh
Confidence 3455688888887777765
No 49
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=40.76 E-value=21 Score=22.11 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhHHHHhh
Q 026746 125 MIHELQCCKQELERKNYELES 145 (234)
Q Consensus 125 yIk~Le~~v~~Le~~~~~le~ 145 (234)
++++|+.+|++|-.++..++.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~ 22 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKN 22 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHH
Confidence 467788888887776655543
No 50
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.04 E-value=30 Score=23.15 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHhh
Q 026746 124 NMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~le~ 145 (234)
.|+.+|+.+++.|+..|..|..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888888887766554
No 51
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=38.41 E-value=87 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=28.2
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEe-ecC-cEEE
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAE-FSD-QKLT 197 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss-~~d-g~l~ 197 (234)
.|.|.-+ ++|. +.+|...|.+.|+.+.++..+ +.+ |.+.
T Consensus 8 ~i~v~v~d~~G~--l~~i~~~la~~~inI~~i~~~~~~~~~~~~ 49 (144)
T 2f06_A 8 QLSIFLENKSGR--LTEVTEVLAKENINLSALCIAENADFGILR 49 (144)
T ss_dssp EEEEEECSSSSH--HHHHHHHHHHTTCCEEEEEEEECSSCEEEE
T ss_pred EEEEEecCCCcH--HHHHHHHHHHCCCCEEEEEEEecCCCCEEE
Confidence 4556667 8999 999999999999888765443 334 4443
No 52
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.89 E-value=29 Score=21.27 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhHHHHhh
Q 026746 125 MIHELQCCKQELERKNYELES 145 (234)
Q Consensus 125 yIk~Le~~v~~Le~~~~~le~ 145 (234)
++.+|+.+|++|-.++..++.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHH
Confidence 456788888887777666554
No 53
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.41 E-value=20 Score=22.27 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhHHHHh
Q 026746 125 MIHELQCCKQELERKNYELE 144 (234)
Q Consensus 125 yIk~Le~~v~~Le~~~~~le 144 (234)
++++|+.+|++|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHH
Confidence 35677777777766654444
No 54
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=35.27 E-value=19 Score=24.25 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 026746 124 NMIHELQCCKQELERKNYEL 143 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~l 143 (234)
.||.+|+.+++.|+.....+
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998865544
No 55
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=33.71 E-value=97 Score=22.55 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=30.9
Q ss_pred CceEEEEEECC-CCChhHHHHHHHHHHhCCCeEEEEEEee-cCcEE
Q 026746 153 GTKVRVNVDNP-TSGVDSMLEVLKCLKDLGSSTRSIQAEF-SDQKL 196 (234)
Q Consensus 153 ~~~V~iei~C~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~-~dg~l 196 (234)
+..-.|.|.|. ..-.....-++++|+..++.+.+++|.. .+|.+
T Consensus 6 e~~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~v 51 (94)
T 2lqj_A 6 LQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNI 51 (94)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCE
T ss_pred ceEEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeE
Confidence 34456889998 3333347778899999999999999655 24533
No 56
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.36 E-value=61 Score=23.54 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Q 026746 119 VKTTANMIHELQCCKQELERKNYEL 143 (234)
Q Consensus 119 L~~aI~yIk~Le~~v~~Le~~~~~l 143 (234)
++.||+-|.-||..+++|..+|..+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888766543
No 57
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=31.61 E-value=68 Score=25.10 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=29.7
Q ss_pred CceEEEEEEC-C-CCChhHHHHHHHHHHhCCCeEEEEE-EeecCcEEEEEEEE
Q 026746 153 GTKVRVNVDN-P-TSGVDSMLEVLKCLKDLGSSTRSIQ-AEFSDQKLTAVLDI 202 (234)
Q Consensus 153 ~~~V~iei~C-~-r~gld~l~~Il~aL~~l~Ldv~sv~-ss~~dg~l~~~lti 202 (234)
....+|.|.. + ++|. +.+|++.|...|+.+..+. +...+|.....+++
T Consensus 23 ~~~~~i~v~~~~~~~G~--~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 23 KNQARINVRGVPDKPGV--AYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp CCCEEEEEEEEECCTTH--HHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred CCEEEEEEecCCCCcCH--HHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 3445677763 5 8899 9999999999997775443 33335644422444
No 58
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.15 E-value=32 Score=20.94 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhHHHHhh
Q 026746 126 IHELQCCKQELERKNYELES 145 (234)
Q Consensus 126 Ik~Le~~v~~Le~~~~~le~ 145 (234)
+.+|+.+|++|-.++..++.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~ 21 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLEN 21 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHH
Confidence 45778888877776665553
No 59
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=30.45 E-value=67 Score=19.07 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhHHHHhhh
Q 026746 125 MIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 125 yIk~Le~~v~~Le~~~~~le~~ 146 (234)
-++.|+.-|++|+.+.|.+|.+
T Consensus 7 ~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666655543
No 60
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.50 E-value=43 Score=20.36 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhHHHHh
Q 026746 126 IHELQCCKQELERKNYELE 144 (234)
Q Consensus 126 Ik~Le~~v~~Le~~~~~le 144 (234)
+++|+.+|++|-.++..++
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 5678888888776655444
No 61
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=29.13 E-value=1.4e+02 Score=23.14 Aligned_cols=66 Identities=14% Similarity=0.280 Sum_probs=37.7
Q ss_pred eEEEEEEC-C-CCChhHHHHHHHHHHhCCCeEEEEEEeec---CcEEEEEEEEEEecCCccCHHHHHHHHHHHHHhhh
Q 026746 155 KVRVNVDN-P-TSGVDSMLEVLKCLKDLGSSTRSIQAEFS---DQKLTAVLDIETQMGAGAVEKDVQRALQKVEDKLL 227 (234)
Q Consensus 155 ~V~iei~C-~-r~gld~l~~Il~aL~~l~Ldv~sv~ss~~---dg~l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k~~ 227 (234)
..+|.|.. + ++|. +.+|+++|.+.|+.+..+..+.. +|.....+++.. .......++|.++.....
T Consensus 16 ~a~Itv~g~~~~~G~--~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~-----~d~~~a~~~L~~~~~~~~ 86 (167)
T 2dt9_A 16 HAQIGLIGIPDQPGI--AAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK-----DFAQEALEALEPVLAEIG 86 (167)
T ss_dssp EEEEEEEEEECSTTH--HHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG-----GGHHHHHHHHHHHHHHHC
T ss_pred EEEEEEecCCCCCCH--HHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh-----HHHHHHHHHHHHHHHHhC
Confidence 45566654 4 7899 99999999998877654433322 454442255543 122333455665544443
No 62
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=28.51 E-value=32 Score=24.64 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=27.6
Q ss_pred EeecCcEEEEEEEEEEecCC---ccCHHHHHHHHHHHHHh
Q 026746 189 AEFSDQKLTAVLDIETQMGA---GAVEKDVQRALQKVEDK 225 (234)
Q Consensus 189 ss~~dg~l~~~lti~~k~~~---~~~~~~Ik~aL~~v~~k 225 (234)
|.+.||-.. |.|+|.-.+ ...++||+.|-.+++.+
T Consensus 15 sRt~dGdYr--L~itcpkKe~LLqSIEgmik~aA~~vLRn 52 (76)
T 2rp4_A 15 SRTPDGDYR--LAITCPNKEWLLQSIEGMIKEAAAEVLRN 52 (76)
T ss_dssp ECCTTTBEE--EEEEESCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeccCCceE--EEEEeCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 457899888 889985444 67889999998888764
No 63
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=28.37 E-value=70 Score=18.40 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=15.3
Q ss_pred CchhhhHHHHHHHHHHHHH
Q 026746 113 NDKNSIVKTTANMIHELQC 131 (234)
Q Consensus 113 ~DKaSIL~~aI~yIk~Le~ 131 (234)
++.+-+|-+|.+|+...+.
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4567788999999987765
No 64
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.21 E-value=71 Score=22.55 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=19.0
Q ss_pred HHHhHHHHHhCCCCCCCCchhhhHHHHH
Q 026746 96 ERQNYLALHSILPPGTKNDKNSIVKTTA 123 (234)
Q Consensus 96 ln~~f~~LrslvP~~~K~DKaSIL~~aI 123 (234)
..+-...|+..-|+++..+...-+...|
T Consensus 12 ~~~F~~mLk~~~p~I~~~s~We~vr~~~ 39 (77)
T 2cqn_A 12 ESAFKSMLKQAAPPIELDAVWEDIRERF 39 (77)
T ss_dssp HHHHHHHHHTCSSCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 3556667888878887777666655444
No 65
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.99 E-value=47 Score=20.29 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhHHHHhh
Q 026746 125 MIHELQCCKQELERKNYELES 145 (234)
Q Consensus 125 yIk~Le~~v~~Le~~~~~le~ 145 (234)
++.+|+.+|++|-.++..++.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~ 22 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXEN 22 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHH
Confidence 456777888777666555543
No 66
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.30 E-value=62 Score=21.94 Aligned_cols=21 Identities=33% Similarity=0.284 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhHHHHhh
Q 026746 125 MIHELQCCKQELERKNYELES 145 (234)
Q Consensus 125 yIk~Le~~v~~Le~~~~~le~ 145 (234)
++.+|+.++++|+.+|+.|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~ 44 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKE 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555543
No 67
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.78 E-value=47 Score=20.33 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhh
Q 026746 125 MIHELQCCKQELERKNYELES 145 (234)
Q Consensus 125 yIk~Le~~v~~Le~~~~~le~ 145 (234)
++++|+.+|++|-.++..++.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~ 22 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLAN 22 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHH
Confidence 457788888887776655543
No 68
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.62 E-value=52 Score=19.99 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhHHHHhh
Q 026746 126 IHELQCCKQELERKNYELES 145 (234)
Q Consensus 126 Ik~Le~~v~~Le~~~~~le~ 145 (234)
+++|+.+|++|-.++..++.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~ 21 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXEN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHH
Confidence 46778888877766655543
No 69
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=26.32 E-value=48 Score=20.29 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhHHHHhh
Q 026746 125 MIHELQCCKQELERKNYELES 145 (234)
Q Consensus 125 yIk~Le~~v~~Le~~~~~le~ 145 (234)
++.+|+.+|++|-.++..++.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~ 22 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIEN 22 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHH
Confidence 456788888888777665553
No 70
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=26.08 E-value=76 Score=29.69 Aligned_cols=68 Identities=7% Similarity=0.044 Sum_probs=47.6
Q ss_pred eEEEEEECCCCChhHHHHHHHHHHhCCCeEEEEEEeecCcE-EEEEEEEEEecCCccCHHHHHHHHHHHHHh-hhh
Q 026746 155 KVRVNVDNPTSGVDSMLEVLKCLKDLGSSTRSIQAEFSDQK-LTAVLDIETQMGAGAVEKDVQRALQKVEDK-LLF 228 (234)
Q Consensus 155 ~V~iei~C~r~gld~l~~Il~aL~~l~Ldv~sv~ss~~dg~-l~~~lti~~k~~~~~~~~~Ik~aL~~v~~k-~~~ 228 (234)
.+.+.+.- ++|- |.++|..+...|++.+.++|.-..+. ..+.+-|.+. ......|++||.++... +.+
T Consensus 36 SLiFsl~n-~pGA--L~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e---h~~d~~v~~AL~eL~~~~~~~ 105 (429)
T 1phz_A 36 SLIFSLKE-EVGA--LAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD---KRTKPVLGSIIKSLRNDIGAT 105 (429)
T ss_dssp EEEEEEEC-CTTH--HHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC---GGGHHHHHHHHHHHHHTTCCC
T ss_pred EEEEEeCC-CccH--HHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe---eCCCHHHHHHHHHHHhhccce
Confidence 34455532 7898 99999999999999999999866432 1222555554 23446789999988877 544
No 71
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=24.59 E-value=67 Score=21.54 Aligned_cols=24 Identities=8% Similarity=0.343 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHHHHhCCCCC
Q 026746 87 INERMRRERERQNYLALHSILPPG 110 (234)
Q Consensus 87 ~sER~RRekln~~f~~LrslvP~~ 110 (234)
.++|-+|...++-+.+|+++-|..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 578889999999999999999983
No 72
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.31 E-value=55 Score=20.02 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhHHHHh
Q 026746 125 MIHELQCCKQELERKNYELE 144 (234)
Q Consensus 125 yIk~Le~~v~~Le~~~~~le 144 (234)
++++|+.+|++|-.++..++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHH
Confidence 45778888888777655544
No 73
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=24.09 E-value=1.7e+02 Score=23.01 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=23.0
Q ss_pred ceEEEEEE-CC-CCChhHHHHHHHHHHhCCCeEEE
Q 026746 154 TKVRVNVD-NP-TSGVDSMLEVLKCLKDLGSSTRS 186 (234)
Q Consensus 154 ~~V~iei~-C~-r~gld~l~~Il~aL~~l~Ldv~s 186 (234)
...+|.|. -+ ++|. +.+|++.|.+.|+.+..
T Consensus 14 ~~~~Itv~~~~~~~G~--~a~if~~La~~~InId~ 46 (178)
T 2dtj_A 14 SEAKVTVLGISDKPGE--AAKVFRALADAEINIDM 46 (178)
T ss_dssp SEEEEEEEEEECSTTH--HHHHHHHHHHTTCCCCE
T ss_pred CEEEEEEecCCCCccH--HHHHHHHHHHcCCCEEE
Confidence 34556664 24 8899 99999999999955543
No 74
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=23.38 E-value=87 Score=17.61 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 026746 116 NSIVKTTANMIHELQCCKQ 134 (234)
Q Consensus 116 aSIL~~aI~yIk~Le~~v~ 134 (234)
+|-|-+|-+|+.+|..+.+
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4667788889998887654
No 75
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=22.92 E-value=87 Score=22.49 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhh
Q 026746 124 NMIHELQCCKQELERKNYELESN 146 (234)
Q Consensus 124 ~yIk~Le~~v~~Le~~~~~le~~ 146 (234)
+.|++|+.++.+|+.+|..+...
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999999888777654
No 76
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=22.56 E-value=1.9e+02 Score=23.83 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=28.6
Q ss_pred EEEEECC-CCChhHHHHHHHHHHh--CCCeEEEEEEeecC-cEEEEEEEEEE
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKD--LGSSTRSIQAEFSD-QKLTAVLDIET 204 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~--l~Ldv~sv~ss~~d-g~l~~~lti~~ 204 (234)
-|+|.|. .+|++.+=+.|.+-.+ ..-+=..|..+..+ =+.. +++.+
T Consensus 94 ~ieltc~~~dGIe~IK~AL~~a~~~~~~~~~~~ikI~lvgaP~Y~--i~~~~ 143 (188)
T 1yz7_A 94 EFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFTYLGAPRYR--IDITA 143 (188)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHHHHTSTTCEEEEEECSTTEEE--EEEEE
T ss_pred EEEEEeCCCchHHHHHHHHHHHHhcccCCCCCcEEEEEEcCcEEE--EEEee
Confidence 3889999 8999888888876655 32222234555544 3344 66666
No 77
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.32 E-value=1.5e+02 Score=18.47 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhhH
Q 026746 113 NDKNSIVKTTANMIHELQCCKQELERKN 140 (234)
Q Consensus 113 ~DKaSIL~~aI~yIk~Le~~v~~Le~~~ 140 (234)
+.-+.-|++|-+-|..|+.+++.|....
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999998754
No 78
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=20.77 E-value=1.5e+02 Score=21.70 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=28.9
Q ss_pred EEEEECC-CCChhHHHHHHHHHHhCC---Ce-EEEEEEeecC-cEEEEEEEEEE
Q 026746 157 RVNVDNP-TSGVDSMLEVLKCLKDLG---SS-TRSIQAEFSD-QKLTAVLDIET 204 (234)
Q Consensus 157 ~iei~C~-r~gld~l~~Il~aL~~l~---Ld-v~sv~ss~~d-g~l~~~lti~~ 204 (234)
.|+|.|. -+|++.+=+.|.+-++.. .+ ..++.....+ =+.. +++.+
T Consensus 9 ~iel~c~~~dGIe~IK~AL~~a~~~~~~~~~~~~~vkI~~vgaP~Y~--i~~~~ 60 (93)
T 2qn6_B 9 LITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYR--VDVVG 60 (93)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHTTHHHHCTTEEEEEEEESSTTEEE--EEEEE
T ss_pred EEEEEeCCCchHHHHHHHHHHHHhhcccccCccceEEEEEEcCCeEE--EEEEe
Confidence 4889999 899988888887665532 11 1345566554 3344 66666
No 79
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.47 E-value=97 Score=20.51 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 026746 117 SIVKTTANMIHELQCCKQELERKNYELES 145 (234)
Q Consensus 117 SIL~~aI~yIk~Le~~v~~Le~~~~~le~ 145 (234)
..|+..++-+..|....++|+.++..++.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777777777777777777665543
No 80
>3gmg_A Uncharacterized protein RV1825/MT1873; structural genomics, unknown function, cell membrane, membrane, transmembrane, PSI-2; 1.50A {Mycobacterium tuberculosis}
Probab=20.36 E-value=2.1e+02 Score=23.31 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=35.5
Q ss_pred HHHhhHHHHhhhcCCCC-CCceEEEEEECCCCCh--hHHHHHHHHHHhCCCeEEEEEE
Q 026746 135 ELERKNYELESNLGLKN-GGTKVRVNVDNPTSGV--DSMLEVLKCLKDLGSSTRSIQA 189 (234)
Q Consensus 135 ~Le~~~~~le~~sg~~~-~~~~V~iei~C~r~gl--d~l~~Il~aL~~l~Ldv~sv~s 189 (234)
.++++.+.++...|... .+--|.|.|.-+..++ +-|.+++++|+.-|-+.++|+-
T Consensus 16 ~~~~~l~~l~~~aG~~~v~GpGv~vtl~d~~~~v~~~dl~~vVNeL~~aGAEAIsIng 73 (170)
T 3gmg_A 16 SAQARLAALSILVGAVGATGPGVMITIDDPGPGVAPEVMIDVINELRAAGAEAIQIND 73 (170)
T ss_dssp ---CHHHHHHHHTTSSCEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHhCccCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 34444455555555443 4455778887652222 3599999999999999998876
Done!