BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026747
MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPS
AFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAGAVMEAKAQLVGIH
DRVRSDMEGDQPPASVSSTTQGVKRVATATNPNAEDAAELLRMCLQCGIPKTFSNTRGMV
CPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEMQLRQQFD

High Scoring Gene Products

Symbol, full name Information P value
AT5G64160 protein from Arabidopsis thaliana 8.9e-54

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026747
        (234 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2164406 - symbol:AT5G64160 "AT5G64160" species...   556  8.9e-54   1


>TAIR|locus:2164406 [details] [associations]
            symbol:AT5G64160 "AT5G64160" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR
            UniGene:At.28965 EMBL:AY037222 EMBL:AY113049 EMBL:AY087055
            IPI:IPI00525597 RefSeq:NP_568986.1 UniGene:At.8462 IntAct:Q94C20
            STRING:Q94C20 PaxDb:Q94C20 PRIDE:Q94C20 EnsemblPlants:AT5G64160.1
            GeneID:836537 KEGG:ath:AT5G64160 TAIR:At5g64160 eggNOG:NOG321105
            HOGENOM:HOG000272708 InParanoid:Q94C20 OMA:MALRQQF PhylomeDB:Q94C20
            ProtClustDB:CLSN2690076 Genevestigator:Q94C20 Uniprot:Q94C20
        Length = 227

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 123/238 (51%), Positives = 155/238 (65%)

Query:     2 MSLSLIQDYSSAGXXXXXXXXXQIHYQXXXXXXXXXXXXXKRTVRYDLPRNSV---DSGL 58
             MSL+L+Q YSSA             Y              + +  +D   ++    ++GL
Sbjct:     1 MSLTLLQGYSSAEEEEAEERAFG-DYDNSDEDGDNDVRRYESSSVFDFSASASSAKNAGL 59

Query:    59 PSAFDVFSQISGPPRFLNNSLEV--KASSIDVXXXXXXXXXXXXXXELPAGAVMEAKAQL 116
             PSA DVFSQISGPP FLNN  E   +AS+ D                 P G VMEAK QL
Sbjct:    60 PSADDVFSQISGPPEFLNNRTEADNEASARDAEHANRISRKKKKVK--PKGVVMEAKPQL 117

Query:   117 VGIHDRVRSDMEGDQPPASVSSTTQGVKRVATATNPNAEDAAELLRMCLQCGIPKTFSNT 176
             VGIH+RVR+D+  D PP+S S    G KR++TATNPNAE++A+LLRMC+QCG+PKT+++ 
Sbjct:   118 VGIHERVRNDI--DAPPSSES----GEKRISTATNPNAEESADLLRMCVQCGVPKTYTSA 171

Query:   177 RGMVCPVCSDRPPADISNESKKKGSIIKDREKSKRMKGQSSHATWKSETEMQLRQQFD 234
             RGMVCP+C DRP  D+  ++KKKGS IKD+EKSKRM+GQSSHA+WKSETEMQLRQ FD
Sbjct:   172 RGMVCPICGDRPLPDV--DAKKKGSTIKDKEKSKRMRGQSSHASWKSETEMQLRQTFD 227


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      234       198   0.00083  111 3  11 23  0.38    33
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.21u 0.10s 17.31t   Elapsed:  00:00:01
  Total cpu time:  17.21u 0.10s 17.31t   Elapsed:  00:00:01
  Start:  Sat May 11 04:26:16 2013   End:  Sat May 11 04:26:17 2013

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