Query 026747
Match_columns 234
No_of_seqs 27 out of 29
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 21:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lpe_B DNA-directed RNA polyme 78.8 0.14 4.7E-06 36.5 -2.4 22 161-187 1-22 (59)
2 6rxn_A Rubredoxin; electron tr 72.9 0.77 2.6E-05 31.2 0.1 21 164-186 7-38 (46)
3 1l8d_A DNA double-strand break 72.6 0.94 3.2E-05 33.4 0.6 9 178-186 47-55 (112)
4 2kae_A GATA-type transcription 68.5 0.66 2.3E-05 34.1 -1.0 24 162-185 9-37 (71)
5 3pwf_A Rubrerythrin; non heme 65.6 1.5 5.1E-05 35.7 0.4 22 163-186 140-161 (170)
6 3m7n_A Putative uncharacterize 63.4 1.9 6.5E-05 34.9 0.6 27 160-187 139-165 (179)
7 2lcq_A Putative toxin VAPC6; P 63.1 1.6 5.5E-05 34.2 0.1 23 163-187 134-157 (165)
8 1vk6_A NADH pyrophosphatase; 1 62.5 2.8 9.6E-05 35.8 1.5 29 162-190 108-137 (269)
9 2x5c_A Hypothetical protein OR 62.4 3.3 0.00011 33.3 1.8 27 155-187 35-61 (131)
10 1pft_A TFIIB, PFTFIIBN; N-term 62.3 1.6 5.6E-05 28.5 0.0 24 163-186 7-32 (50)
11 4ayb_P DNA-directed RNA polyme 61.5 2.1 7.2E-05 29.9 0.5 28 162-189 4-34 (48)
12 3h7h_A Transcription elongatio 61.2 0.18 6.1E-06 40.4 -5.7 26 161-186 16-41 (120)
13 2exu_A Transcription initiatio 61.0 0.17 5.9E-06 43.0 -6.2 28 161-188 4-36 (200)
14 2akl_A PHNA-like protein PA012 54.2 3.5 0.00012 34.1 0.7 23 164-186 30-52 (138)
15 1lko_A Rubrerythrin all-iron(I 54.2 2.5 8.5E-05 34.5 -0.2 22 163-186 157-179 (191)
16 1yuz_A Nigerythrin; rubrythrin 52.4 3.7 0.00013 34.1 0.6 22 163-186 173-194 (202)
17 3a43_A HYPD, hydrogenase nicke 52.2 3 0.0001 32.9 -0.0 27 163-189 72-118 (139)
18 1ug2_A 2610100B20RIK gene prod 52.0 23 0.00077 27.7 4.9 34 139-175 26-60 (95)
19 3v2d_5 50S ribosomal protein L 51.2 3.3 0.00011 29.3 0.1 21 161-185 30-50 (60)
20 1e8j_A Rubredoxin; iron-sulfur 51.1 4.4 0.00015 27.7 0.7 9 179-187 37-45 (52)
21 2kdx_A HYPA, hydrogenase/ureas 50.5 3.5 0.00012 31.2 0.1 26 162-188 74-100 (119)
22 3h0g_L DNA-directed RNA polyme 50.4 5.5 0.00019 28.7 1.1 32 159-190 19-50 (63)
23 2csz_A Synaptotagmin-like prot 50.1 2.3 7.8E-05 31.8 -0.9 28 161-188 25-52 (76)
24 2zjr_Z 50S ribosomal protein L 47.1 4.3 0.00015 28.6 0.2 21 162-186 31-51 (60)
25 4rxn_A Rubredoxin; electron tr 46.5 5.8 0.0002 27.6 0.7 9 179-187 37-45 (54)
26 2kn9_A Rubredoxin; metalloprot 46.0 5.5 0.00019 29.9 0.6 9 178-186 60-68 (81)
27 2v3b_B Rubredoxin 2, rubredoxi 45.9 5.6 0.00019 27.5 0.6 9 179-187 37-45 (55)
28 1w7p_D VPS36P, YLR417W; ESCRT- 45.8 4.3 0.00015 39.3 0.0 15 159-173 138-152 (566)
29 1s24_A Rubredoxin 2; electron 45.8 5.2 0.00018 30.4 0.4 8 179-186 69-76 (87)
30 1zbd_B Rabphilin-3A; G protein 45.6 4.1 0.00014 32.3 -0.1 26 162-187 56-81 (134)
31 1dl6_A Transcription factor II 45.6 6.4 0.00022 27.1 0.8 23 163-185 13-37 (58)
32 1yk4_A Rubredoxin, RD; electro 45.4 5.2 0.00018 27.4 0.4 9 178-186 35-43 (52)
33 2g2k_A EIF-5, eukaryotic trans 45.2 13 0.00045 31.1 2.8 49 143-191 71-132 (170)
34 3p8b_A DNA-directed RNA polyme 44.3 1.6 5.4E-05 33.1 -2.6 23 161-188 23-45 (81)
35 1dx8_A Rubredoxin; electron tr 42.0 7.3 0.00025 28.1 0.7 9 178-186 40-48 (70)
36 2fiy_A Protein FDHE homolog; F 34.9 9.9 0.00034 33.8 0.5 15 176-190 180-194 (309)
37 3o9x_A Uncharacterized HTH-typ 34.6 12 0.00039 27.5 0.8 8 180-187 38-45 (133)
38 1etr_L Epsilon-thrombin; serin 33.0 30 0.001 24.2 2.6 30 170-208 12-41 (49)
39 2zet_C Melanophilin; complex, 32.7 12 0.00039 30.4 0.6 27 161-187 68-94 (153)
40 3ga8_A HTH-type transcriptiona 32.7 13 0.00043 26.2 0.7 8 179-186 3-10 (78)
41 1nee_A EIF-2-beta, probable tr 31.9 30 0.001 27.8 2.8 89 101-190 28-135 (138)
42 1twf_L ABC10-alpha, DNA-direct 31.8 13 0.00043 26.9 0.6 28 163-190 30-57 (70)
43 3bei_A Prothrombin; serine pro 30.7 26 0.00089 24.1 2.0 30 170-208 7-36 (44)
44 2pk7_A Uncharacterized protein 30.4 12 0.00042 26.8 0.3 24 164-187 11-35 (69)
45 3b9f_L Prothrombin; michaelis 30.2 27 0.00091 24.5 2.0 26 178-208 16-41 (49)
46 1lng_A SRP19, signal recogniti 30.1 23 0.00078 26.4 1.8 42 140-181 14-65 (87)
47 2apo_B Ribosome biogenesis pro 29.1 12 0.00042 26.6 0.2 25 161-190 6-30 (60)
48 1kvn_A SRP19; RNA binding prot 28.2 32 0.0011 26.5 2.3 42 140-181 17-67 (104)
49 3j20_Y 30S ribosomal protein S 26.7 13 0.00044 25.1 -0.1 25 161-185 19-44 (50)
50 2hf1_A Tetraacyldisaccharide-1 26.6 13 0.00046 26.5 -0.0 24 164-187 11-35 (68)
51 2d74_B Translation initiation 26.2 69 0.0024 26.0 4.1 90 101-191 30-138 (148)
52 1h7b_A Anaerobic ribonucleotid 24.5 14 0.00048 35.7 -0.3 18 164-185 543-565 (605)
53 2elx_A Zinc finger protein 406 24.3 29 0.001 18.4 1.1 15 174-188 3-17 (35)
54 3e6p_L Prothrombin; meizothrom 23.8 55 0.0019 26.8 3.1 30 170-208 121-150 (158)
55 2epq_A POZ-, at HOOK-, and zin 23.6 25 0.00085 20.2 0.8 13 173-185 33-45 (45)
56 2jr6_A UPF0434 protein NMA0874 23.5 15 0.00052 26.3 -0.3 24 164-187 11-35 (68)
57 2elp_A Zinc finger protein 406 23.3 31 0.0011 18.7 1.1 16 173-188 4-19 (37)
58 1p7a_A BF3, BKLF, kruppel-like 23.2 45 0.0015 18.0 1.8 18 172-189 5-22 (37)
59 2elo_A Zinc finger protein 406 22.4 34 0.0012 18.5 1.1 17 173-189 4-20 (37)
60 2js4_A UPF0434 protein BB2007; 22.2 17 0.00057 26.2 -0.3 24 164-187 11-35 (70)
61 1u5k_A Hypothetical protein; O 21.9 23 0.0008 28.9 0.5 24 164-187 153-179 (244)
62 1vq8_Z 50S ribosomal protein L 21.7 11 0.00039 27.9 -1.3 24 164-187 30-54 (83)
63 4ayb_B DNA-directed RNA polyme 21.5 20 0.00067 36.6 -0.0 24 164-187 1064-1088(1131)
64 1nui_A DNA primase/helicase; z 21.3 22 0.00075 29.2 0.2 10 178-187 14-23 (255)
65 3cng_A Nudix hydrolase; struct 20.9 24 0.00082 27.1 0.4 24 162-185 4-32 (189)
66 1k0p_A DNA polymerase alpha ca 20.5 50 0.0017 20.6 1.7 17 169-186 14-30 (31)
67 2elt_A Zinc finger protein 406 20.4 37 0.0013 18.1 1.0 15 174-188 5-19 (36)
68 3mjh_B Early endosome antigen 20.2 22 0.00077 22.7 0.1 10 177-186 4-13 (34)
No 1
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=78.80 E-value=0.14 Score=36.52 Aligned_cols=22 Identities=32% Similarity=0.964 Sum_probs=18.6
Q ss_pred HHHHHhcCCCccccCCCCccccCCCCC
Q 026747 161 LRMCLQCGIPKTFSNTRGMVCPVCSDR 187 (234)
Q Consensus 161 LrMclqcgiPKt~s~argmvcPvcgdR 187 (234)
||.|+.|++=+|+. .||.|+..
T Consensus 1 lrAC~~C~~v~~~~-----~CpnC~~~ 22 (59)
T 3lpe_B 1 MRACLKCKYLTNDE-----ICPICHSP 22 (59)
T ss_dssp CEEETTTCBEESSS-----BCTTTCCB
T ss_pred CcccccCCcccCCC-----CCCCCCCC
Confidence 57799999998876 69999974
No 2
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=72.90 E-value=0.77 Score=31.16 Aligned_cols=21 Identities=33% Similarity=0.915 Sum_probs=14.0
Q ss_pred HHhcCCCccccCCCC-----------ccccCCCC
Q 026747 164 CLQCGIPKTFSNTRG-----------MVCPVCSD 186 (234)
Q Consensus 164 clqcgiPKt~s~arg-----------mvcPvcgd 186 (234)
|..|| -+|-.+.| -+||+||.
T Consensus 7 C~vCG--yvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 7 CNVCG--YEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp ETTTC--CEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCCCC--eEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 66777 34544444 39999996
No 3
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.64 E-value=0.94 Score=33.39 Aligned_cols=9 Identities=44% Similarity=1.029 Sum_probs=7.9
Q ss_pred CccccCCCC
Q 026747 178 GMVCPVCSD 186 (234)
Q Consensus 178 gmvcPvcgd 186 (234)
|.+||+||-
T Consensus 47 g~~CPvCgs 55 (112)
T 1l8d_A 47 KGKCPVCGR 55 (112)
T ss_dssp SEECTTTCC
T ss_pred CCCCCCCCC
Confidence 789999985
No 4
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=68.49 E-value=0.66 Score=34.06 Aligned_cols=24 Identities=25% Similarity=0.681 Sum_probs=18.7
Q ss_pred HHHHhcCCCccccCCC-----CccccCCC
Q 026747 162 RMCLQCGIPKTFSNTR-----GMVCPVCS 185 (234)
Q Consensus 162 rMclqcgiPKt~s~ar-----gmvcPvcg 185 (234)
+.|..||+.+|..=-+ |++|-.||
T Consensus 9 ~~C~nC~tt~Tp~WRrg~~~~g~LCNACG 37 (71)
T 2kae_A 9 FQCSNCSVTETIRWRNIRSKEGIQCNACF 37 (71)
T ss_dssp CCCSSSCCSCCSSCCCCSSSSCCCSSHHH
T ss_pred CcCCccCCCCCCccccCCCCCCccchHHH
Confidence 4699999999965444 77888887
No 5
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=65.55 E-value=1.5 Score=35.74 Aligned_cols=22 Identities=32% Similarity=0.875 Sum_probs=15.0
Q ss_pred HHHhcCCCccccCCCCccccCCCC
Q 026747 163 MCLQCGIPKTFSNTRGMVCPVCSD 186 (234)
Q Consensus 163 MclqcgiPKt~s~argmvcPvcgd 186 (234)
+|..||.-.. ..---+||+||.
T Consensus 140 ~C~~CG~i~~--~~~p~~CP~Cg~ 161 (170)
T 3pwf_A 140 ICPICGYTAV--DEAPEYCPVCGA 161 (170)
T ss_dssp ECTTTCCEEE--SCCCSBCTTTCC
T ss_pred EeCCCCCeeC--CCCCCCCCCCCC
Confidence 4999997443 222349999995
No 6
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=63.41 E-value=1.9 Score=34.89 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCccccCCCCccccCCCCC
Q 026747 160 LLRMCLQCGIPKTFSNTRGMVCPVCSDR 187 (234)
Q Consensus 160 lLrMclqcgiPKt~s~argmvcPvcgdR 187 (234)
|..+|..||.|-.-.+ .-|.||.||-.
T Consensus 139 v~a~~~~~g~~m~~~~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 139 LRALCSNCKTEMVREG-DILKCPECGRV 165 (179)
T ss_dssp EECBCTTTCCBCEECS-SSEECSSSCCE
T ss_pred EEecccccCCceEECC-CEEECCCCCCE
Confidence 3445778999887666 78999999964
No 7
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=63.06 E-value=1.6 Score=34.21 Aligned_cols=23 Identities=43% Similarity=1.194 Sum_probs=14.6
Q ss_pred HHHhcCCCccccC-CCCccccCCCCC
Q 026747 163 MCLQCGIPKTFSN-TRGMVCPVCSDR 187 (234)
Q Consensus 163 MclqcgiPKt~s~-argmvcPvcgdR 187 (234)
.|..|| +.|.. ..+-.||.||-.
T Consensus 134 ~C~~Cg--~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 134 VCIGCG--RKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp EESSSC--CEESSCCGGGBCTTTCCB
T ss_pred ECCCCC--CcccCCCCCCcCCCCCCc
Confidence 377788 44542 234589999864
No 8
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=62.47 E-value=2.8 Score=35.79 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=22.3
Q ss_pred HHHHhcCCCccccCCC-CccccCCCCCCCC
Q 026747 162 RMCLQCGIPKTFSNTR-GMVCPVCSDRPPA 190 (234)
Q Consensus 162 rMclqcgiPKt~s~ar-gmvcPvcgdRp~~ 190 (234)
+.|-+||-|-....+. .++||.||...-.
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~~yp 137 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRERYYP 137 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCEECC
T ss_pred CccccCCCcCccCCCceeeeCCCCCCEecC
Confidence 3499999998665544 7899999986554
No 9
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=62.37 E-value=3.3 Score=33.32 Aligned_cols=27 Identities=37% Similarity=0.799 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCCCccccCCCCccccCCCCC
Q 026747 155 EDAAELLRMCLQCGIPKTFSNTRGMVCPVCSDR 187 (234)
Q Consensus 155 edaadlLrMclqcgiPKt~s~argmvcPvcgdR 187 (234)
.-||||+||-..-|| |.|+. ||.||..
T Consensus 35 dmaadlvrmlrglgv---fmhak---cprcgae 61 (131)
T 2x5c_A 35 DMAADLVRMLRGLGV---FMHAK---CPRCGAE 61 (131)
T ss_dssp HHHHHHHHHHHHHTC---CCEEE---CTTTSCE
T ss_pred hHHHHHHHHHhcchh---eeecc---CCCCCCc
Confidence 458999999988776 56654 9999974
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=62.26 E-value=1.6 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.693 Sum_probs=18.7
Q ss_pred HHHhcCC-CccccCCC-CccccCCCC
Q 026747 163 MCLQCGI-PKTFSNTR-GMVCPVCSD 186 (234)
Q Consensus 163 Mclqcgi-PKt~s~ar-gmvcPvcgd 186 (234)
.|-.||- +-.|..++ .+||+.||-
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCC
Confidence 3788988 77777665 589999986
No 11
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=61.49 E-value=2.1 Score=29.94 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=19.3
Q ss_pred HHHHhcCCCccccCCC---CccccCCCCCCC
Q 026747 162 RMCLQCGIPKTFSNTR---GMVCPVCSDRPP 189 (234)
Q Consensus 162 rMclqcgiPKt~s~ar---gmvcPvcgdRp~ 189 (234)
=||+.||---+.+.-. |--||.||-|=.
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCSCE
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcEEE
Confidence 3799999655544442 778999998743
No 12
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=61.23 E-value=0.18 Score=40.44 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=21.6
Q ss_pred HHHHHhcCCCccccCCCCccccCCCC
Q 026747 161 LRMCLQCGIPKTFSNTRGMVCPVCSD 186 (234)
Q Consensus 161 LrMclqcgiPKt~s~argmvcPvcgd 186 (234)
||.|+.|++=+|+..-+.-+||.|+.
T Consensus 16 lrAC~~C~~V~t~~qF~~~gCpnC~~ 41 (120)
T 3h7h_A 16 LRACLLCSLVKTIDQFEYDGCDNCDA 41 (120)
T ss_dssp EEEETTTCBEEEHHHHHHHCCTTTHH
T ss_pred CeeeccCCceechhhccCCCCCCCcc
Confidence 68899999999987654568999984
No 13
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=60.98 E-value=0.17 Score=43.04 Aligned_cols=28 Identities=32% Similarity=0.644 Sum_probs=22.7
Q ss_pred HHHHHhcCCCccccCCCCccccCC-----CCCC
Q 026747 161 LRMCLQCGIPKTFSNTRGMVCPVC-----SDRP 188 (234)
Q Consensus 161 LrMclqcgiPKt~s~argmvcPvc-----gdRp 188 (234)
||.|+.|++=+|+..-..-+||.| |++.
T Consensus 4 lrAC~~C~~i~t~~qf~~~gCpnC~~~l~g~~~ 36 (200)
T 2exu_A 4 ERACMLCGIVQTTNEFNRDGCPNCQGIFEEAGV 36 (200)
T ss_dssp EEEETTTCBEEEHHHHHHHCCTTTHHHHHHHTC
T ss_pred ceecccCCceechhHhccCCCCCCccccCCCcc
Confidence 567999999999765555699999 8874
No 14
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=54.24 E-value=3.5 Score=34.05 Aligned_cols=23 Identities=35% Similarity=0.865 Sum_probs=21.9
Q ss_pred HHhcCCCccccCCCCccccCCCC
Q 026747 164 CLQCGIPKTFSNTRGMVCPVCSD 186 (234)
Q Consensus 164 clqcgiPKt~s~argmvcPvcgd 186 (234)
|-+|+-.-||-..--.|||-|+-
T Consensus 30 CP~C~seytYeDg~l~vCPeC~h 52 (138)
T 2akl_A 30 CPQCNSEYTYEDGALLVCPECAH 52 (138)
T ss_dssp CTTTCCCCCEECSSSEEETTTTE
T ss_pred CCCCCCcceEecCCeEECCcccc
Confidence 99999999999999999999985
No 15
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=54.21 E-value=2.5 Score=34.52 Aligned_cols=22 Identities=27% Similarity=0.804 Sum_probs=14.5
Q ss_pred HHHhcCCCccccC-CCCccccCCCC
Q 026747 163 MCLQCGIPKTFSN-TRGMVCPVCSD 186 (234)
Q Consensus 163 MclqcgiPKt~s~-argmvcPvcgd 186 (234)
+|..||.- |.+ .---+||+||.
T Consensus 157 ~C~~CG~~--~~g~~~p~~CP~C~~ 179 (191)
T 1lko_A 157 RCRNCGYV--HEGTGAPELCPACAH 179 (191)
T ss_dssp EETTTCCE--EEEEECCSBCTTTCC
T ss_pred EECCCCCE--eeCCCCCCCCCCCcC
Confidence 38999954 432 11239999997
No 16
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=52.37 E-value=3.7 Score=34.06 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=14.8
Q ss_pred HHHhcCCCccccCCCCccccCCCC
Q 026747 163 MCLQCGIPKTFSNTRGMVCPVCSD 186 (234)
Q Consensus 163 MclqcgiPKt~s~argmvcPvcgd 186 (234)
.|..||.- |-+..--+||+||-
T Consensus 173 ~C~~CG~i--~~g~~p~~CP~C~~ 194 (202)
T 1yuz_A 173 LCPICGYI--HKGEDFEKCPICFR 194 (202)
T ss_dssp ECSSSCCE--EESSCCSBCTTTCC
T ss_pred EECCCCCE--EcCcCCCCCCCCCC
Confidence 38889854 43333469999985
No 17
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=52.18 E-value=3 Score=32.90 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=18.7
Q ss_pred HHHhcCCCccccC-----------CC---------CccccCCCCCCC
Q 026747 163 MCLQCGIPKTFSN-----------TR---------GMVCPVCSDRPP 189 (234)
Q Consensus 163 MclqcgiPKt~s~-----------ar---------gmvcPvcgdRp~ 189 (234)
.|..||---+... .- .+.||.||-...
T Consensus 72 ~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 72 KCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp EETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred ECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 5999996544433 21 689999997654
No 18
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=52.02 E-value=23 Score=27.70 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=27.0
Q ss_pred cccccccccccCCCChhhHHHHHHHHHhcCC-CccccC
Q 026747 139 TTQGVKRVATATNPNAEDAAELLRMCLQCGI-PKTFSN 175 (234)
Q Consensus 139 ~~~~~kR~~~a~np~aedaadlLrMclqcgi-PKt~s~ 175 (234)
+...|+.|.--| -|+=.++|.||.+-|. ||||+.
T Consensus 26 ~~s~Ge~VvlWT---Re~DR~IL~~cQ~~G~s~~tFa~ 60 (95)
T 1ug2_A 26 VSSTGEKVVLWT---READRVILTMCQEQGAQPHTFSV 60 (95)
T ss_dssp CCCCCCCCSSSC---HHHHHHHHHHHHHTTSCTTTHHH
T ss_pred ecCCCCEEEEec---cccCHHHHHHHHhcCCChhHHHH
Confidence 345667777555 6788999999999888 999975
No 19
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=51.22 E-value=3.3 Score=29.32 Aligned_cols=21 Identities=38% Similarity=0.757 Sum_probs=16.3
Q ss_pred HHHHHhcCCCccccCCCCccccCCC
Q 026747 161 LRMCLQCGIPKTFSNTRGMVCPVCS 185 (234)
Q Consensus 161 LrMclqcgiPKt~s~argmvcPvcg 185 (234)
|--|-+||-+|-. -.|||.||
T Consensus 30 l~~c~~cGe~~~~----H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKAMKPP----HTVCPECG 50 (60)
T ss_dssp CEECTTTCCEECT----TSCCTTTC
T ss_pred eeECCCCCCeecc----eEEcCCCC
Confidence 4458899987754 57899998
No 20
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=51.15 E-value=4.4 Score=27.73 Aligned_cols=9 Identities=44% Similarity=1.221 Sum_probs=7.2
Q ss_pred ccccCCCCC
Q 026747 179 MVCPVCSDR 187 (234)
Q Consensus 179 mvcPvcgdR 187 (234)
-+||+||..
T Consensus 37 w~CP~Cg~~ 45 (52)
T 1e8j_A 37 WACPVCGAS 45 (52)
T ss_dssp CCCSSSCCC
T ss_pred CcCCCCCCc
Confidence 489999973
No 21
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=50.50 E-value=3.5 Score=31.19 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=17.9
Q ss_pred HHHHhcCCCccccCCCCc-cccCCCCCC
Q 026747 162 RMCLQCGIPKTFSNTRGM-VCPVCSDRP 188 (234)
Q Consensus 162 rMclqcgiPKt~s~argm-vcPvcgdRp 188 (234)
-.|..||---... .... .||.||-.-
T Consensus 74 ~~C~~CG~~~e~~-~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 74 LECKDCSHVFKPN-ALDYGVCEKCHSKN 100 (119)
T ss_dssp EECSSSSCEECSC-CSTTCCCSSSSSCC
T ss_pred EEcCCCCCEEeCC-CCCCCcCccccCCC
Confidence 3599999644332 3457 899999763
No 22
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=50.38 E-value=5.5 Score=28.68 Aligned_cols=32 Identities=22% Similarity=0.577 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCccccCCCCccccCCCCCCCC
Q 026747 159 ELLRMCLQCGIPKTFSNTRGMVCPVCSDRPPA 190 (234)
Q Consensus 159 dlLrMclqcgiPKt~s~argmvcPvcgdRp~~ 190 (234)
...=.|..||..-.......+-||-||-|=.-
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILy 50 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRVMY 50 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCB
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEEEE
Confidence 34456999999887776668999999998764
No 23
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.08 E-value=2.3 Score=31.81 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=25.1
Q ss_pred HHHHHhcCCCccccCCCCccccCCCCCC
Q 026747 161 LRMCLQCGIPKTFSNTRGMVCPVCSDRP 188 (234)
Q Consensus 161 LrMclqcgiPKt~s~argmvcPvcgdRp 188 (234)
.|.|..|+-|-.+...+|-+|+.|.-|=
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rV 52 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLV 52 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEEC
T ss_pred ccchhhhCccccccccCCCcCcccChhh
Confidence 4789999999999999999999997653
No 24
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=47.13 E-value=4.3 Score=28.62 Aligned_cols=21 Identities=33% Similarity=0.679 Sum_probs=16.1
Q ss_pred HHHHhcCCCccccCCCCccccCCCC
Q 026747 162 RMCLQCGIPKTFSNTRGMVCPVCSD 186 (234)
Q Consensus 162 rMclqcgiPKt~s~argmvcPvcgd 186 (234)
--|-+||-+|- ...|||.||-
T Consensus 31 ~~c~~cG~~~~----pH~vc~~CG~ 51 (60)
T 2zjr_Z 31 TECPQCHGKKL----SHHICPNCGY 51 (60)
T ss_dssp EECTTTCCEEC----TTBCCTTTCB
T ss_pred eECCCCCCEeC----CceEcCCCCc
Confidence 34889998853 3689999993
No 25
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.50 E-value=5.8 Score=27.61 Aligned_cols=9 Identities=44% Similarity=1.158 Sum_probs=7.3
Q ss_pred ccccCCCCC
Q 026747 179 MVCPVCSDR 187 (234)
Q Consensus 179 mvcPvcgdR 187 (234)
-+||+||..
T Consensus 37 w~CP~Cg~~ 45 (54)
T 4rxn_A 37 WVCPLCGVG 45 (54)
T ss_dssp CBCTTTCCB
T ss_pred CcCcCCCCc
Confidence 489999974
No 26
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=46.03 E-value=5.5 Score=29.89 Aligned_cols=9 Identities=33% Similarity=0.959 Sum_probs=7.4
Q ss_pred CccccCCCC
Q 026747 178 GMVCPVCSD 186 (234)
Q Consensus 178 gmvcPvcgd 186 (234)
.-+||+||.
T Consensus 60 dW~CPvCga 68 (81)
T 2kn9_A 60 DWSCPDCGA 68 (81)
T ss_dssp TCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 348999997
No 27
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=45.89 E-value=5.6 Score=27.48 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=7.3
Q ss_pred ccccCCCCC
Q 026747 179 MVCPVCSDR 187 (234)
Q Consensus 179 mvcPvcgdR 187 (234)
-+||+||..
T Consensus 37 w~CP~Cga~ 45 (55)
T 2v3b_B 37 WVCPDCGVG 45 (55)
T ss_dssp CCCTTTCCC
T ss_pred CcCCCCCCC
Confidence 489999973
No 28
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=45.83 E-value=4.3 Score=39.29 Aligned_cols=15 Identities=27% Similarity=0.970 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCccc
Q 026747 159 ELLRMCLQCGIPKTF 173 (234)
Q Consensus 159 dlLrMclqcgiPKt~ 173 (234)
.-|.-|+.||||-+|
T Consensus 138 ~~~p~C~~CGi~p~~ 152 (566)
T 1w7p_D 138 LPTPICINCGVPADY 152 (566)
T ss_dssp ---------------
T ss_pred CCCCcccccCCCCch
Confidence 456779999999876
No 29
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=45.77 E-value=5.2 Score=30.38 Aligned_cols=8 Identities=38% Similarity=1.115 Sum_probs=6.9
Q ss_pred ccccCCCC
Q 026747 179 MVCPVCSD 186 (234)
Q Consensus 179 mvcPvcgd 186 (234)
-+||+||.
T Consensus 69 W~CPvCga 76 (87)
T 1s24_A 69 WCCPDCGA 76 (87)
T ss_dssp CCCSSSCC
T ss_pred CCCCCCCC
Confidence 48999997
No 30
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.61 E-value=4.1 Score=32.30 Aligned_cols=26 Identities=23% Similarity=0.641 Sum_probs=22.4
Q ss_pred HHHHhcCCCccccCCCCccccCCCCC
Q 026747 162 RMCLQCGIPKTFSNTRGMVCPVCSDR 187 (234)
Q Consensus 162 rMclqcgiPKt~s~argmvcPvcgdR 187 (234)
+.|..|+-|++|+..+|.+|..|.-+
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~ 81 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKN 81 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCE
T ss_pred ccccccCCCcccccCCCCCCCCCCcc
Confidence 56999999999999999888887654
No 31
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=45.56 E-value=6.4 Score=27.10 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=17.3
Q ss_pred HHHhcCC-CccccCCC-CccccCCC
Q 026747 163 MCLQCGI-PKTFSNTR-GMVCPVCS 185 (234)
Q Consensus 163 Mclqcgi-PKt~s~ar-gmvcPvcg 185 (234)
.|-.||- +-.|-.++ .+||..||
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CG 37 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECG 37 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTC
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCC
Confidence 4888876 66666665 68999998
No 32
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=45.37 E-value=5.2 Score=27.36 Aligned_cols=9 Identities=44% Similarity=1.294 Sum_probs=7.2
Q ss_pred CccccCCCC
Q 026747 178 GMVCPVCSD 186 (234)
Q Consensus 178 gmvcPvcgd 186 (234)
.-+||+||.
T Consensus 35 dw~CP~Cg~ 43 (52)
T 1yk4_A 35 DWVCPLCGA 43 (52)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 348999997
No 33
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=45.21 E-value=13 Score=31.06 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=37.3
Q ss_pred cccccccCCCChhhHHHHHH-------HHHhcCCCccccCC----C--CccccCCCCCCCCC
Q 026747 143 VKRVATATNPNAEDAAELLR-------MCLQCGIPKTFSNT----R--GMVCPVCSDRPPAD 191 (234)
Q Consensus 143 ~kR~~~a~np~aedaadlLr-------MclqcgiPKt~s~a----r--gmvcPvcgdRp~~~ 191 (234)
+-|.+--..=.+.+-.+||+ +|-.|+-|-|...- | -+.|-+||.+-+.+
T Consensus 71 ~~rliinG~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 71 NDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLD 132 (170)
T ss_dssp TCCEEEEBCCCHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSC
T ss_pred CCEEEEEeeeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccccc
Confidence 55666555566778888886 49999999998776 3 57899999976665
No 34
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=44.27 E-value=1.6 Score=33.15 Aligned_cols=23 Identities=30% Similarity=0.748 Sum_probs=18.3
Q ss_pred HHHHHhcCCCccccCCCCccccCCCCCC
Q 026747 161 LRMCLQCGIPKTFSNTRGMVCPVCSDRP 188 (234)
Q Consensus 161 LrMclqcgiPKt~s~argmvcPvcgdRp 188 (234)
+|.|+.|++=+++. .||+||...
T Consensus 23 ~rAC~~C~~v~~~d-----~CPnCgs~~ 45 (81)
T 3p8b_A 23 EKACRHCHYITSED-----RCPVCGSRD 45 (81)
T ss_dssp CEEETTTCBEESSS-----SCTTTCCCC
T ss_pred HHHHhhCCCccCCC-----CCCCCCCCc
Confidence 45699999988764 599999865
No 35
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=42.00 E-value=7.3 Score=28.14 Aligned_cols=9 Identities=33% Similarity=1.280 Sum_probs=7.3
Q ss_pred CccccCCCC
Q 026747 178 GMVCPVCSD 186 (234)
Q Consensus 178 gmvcPvcgd 186 (234)
.-+||+||.
T Consensus 40 dw~CP~Cga 48 (70)
T 1dx8_A 40 SFMCPACRS 48 (70)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 348999997
No 36
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=34.93 E-value=9.9 Score=33.83 Aligned_cols=15 Identities=33% Similarity=0.848 Sum_probs=12.2
Q ss_pred CCCccccCCCCCCCC
Q 026747 176 TRGMVCPVCSDRPPA 190 (234)
Q Consensus 176 argmvcPvcgdRp~~ 190 (234)
-...+|||||..|.-
T Consensus 180 ~~~~~CPvCGs~P~~ 194 (309)
T 2fiy_A 180 ESRTLCPACGSPPMA 194 (309)
T ss_dssp TTCSSCTTTCCCEEE
T ss_pred ccCCCCCCCCCcCce
Confidence 345699999999985
No 37
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=34.55 E-value=12 Score=27.48 Aligned_cols=8 Identities=25% Similarity=0.866 Sum_probs=3.7
Q ss_pred cccCCCCC
Q 026747 180 VCPVCSDR 187 (234)
Q Consensus 180 vcPvcgdR 187 (234)
+|+.||..
T Consensus 38 ~C~~CGE~ 45 (133)
T 3o9x_A 38 YCVHCEES 45 (133)
T ss_dssp EESSSSCE
T ss_pred ECCCCCCE
Confidence 34444444
No 38
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=32.99 E-value=30 Score=24.24 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=18.1
Q ss_pred CccccCCCCccccCCCCCCCCCCchhhhhcCCchhHHHh
Q 026747 170 PKTFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDREK 208 (234)
Q Consensus 170 PKt~s~argmvcPvcgdRp~~~~~~~~kk~g~~~kd~ek 208 (234)
||||-++ =-.||-||.- +||...+..++|=
T Consensus 12 pktFG~G----E~dCG~RPlF-----Ek~~~~D~~E~EL 41 (49)
T 1etr_L 12 EKTFGAG----EADCGLRPLF-----EKKQVQDQTEKEL 41 (49)
T ss_dssp --CCBSC----CTTTTCCTTT-----GGGTCCCTTHHHH
T ss_pred CcCCCCc----ccccccchhH-----hhhccccccHHHH
Confidence 5565443 4689999996 4555555566553
No 39
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.71 E-value=12 Score=30.40 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.8
Q ss_pred HHHHHhcCCCccccCCCCccccCCCCC
Q 026747 161 LRMCLQCGIPKTFSNTRGMVCPVCSDR 187 (234)
Q Consensus 161 LrMclqcgiPKt~s~argmvcPvcgdR 187 (234)
-+.|..|+-|-.|...+|.+|..|.-+
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~ 94 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLF 94 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCE
T ss_pred CccchhhcCccccccCCCCcCCCCCch
Confidence 367999999999999999999988764
No 40
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=32.66 E-value=13 Score=26.17 Aligned_cols=8 Identities=63% Similarity=1.551 Sum_probs=6.2
Q ss_pred ccccCCCC
Q 026747 179 MVCPVCSD 186 (234)
Q Consensus 179 mvcPvcgd 186 (234)
|.||+||.
T Consensus 3 m~Cp~Cg~ 10 (78)
T 3ga8_A 3 MKCPVCHQ 10 (78)
T ss_dssp CBCTTTSS
T ss_pred eECCCCCC
Confidence 77888875
No 41
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=31.88 E-value=30 Score=27.80 Aligned_cols=89 Identities=15% Similarity=0.208 Sum_probs=52.6
Q ss_pred cCCCCCcceEeecceee----ccchhhcccccCC----CCCCCCCccccccccccccCCCChhhHHHHHH-------HHH
Q 026747 101 KKELPAGAVMEAKAQLV----GIHDRVRSDMEGD----QPPASVSSTTQGVKRVATATNPNAEDAAELLR-------MCL 165 (234)
Q Consensus 101 kK~~P~gAVveAKpqlv----~i~eRvrsd~~g~----~~p~s~s~~~~~~kR~~~a~np~aedaadlLr-------Mcl 165 (234)
-|-||+-+++|-+-+++ -|-+++..+..-. ..+=++++.-. +.|.+--..=.+.+-.++|+ +|-
T Consensus 28 ~~mp~~~v~~eG~kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~~~~~~i~~~L~~yI~~yVlC~ 106 (138)
T 1nee_A 28 FEVPKAYSVIQGNRTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-GGRAILQGKFTHFLINERIEDYVNKFVICH 106 (138)
T ss_dssp CCCSCCCCCEETTEEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-TTTEEEESSCSSSHHHHHHHHHHTHHHHHT
T ss_pred eecCCCeEEEECCcEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-CCEEEEEeeeCHHHHHHHHHHHHhhEEECC
Confidence 34566677777764543 2444444441100 01111122233 55555455556778888997 699
Q ss_pred hcCCCccccCCC----CccccCCCCCCCC
Q 026747 166 QCGIPKTFSNTR----GMVCPVCSDRPPA 190 (234)
Q Consensus 166 qcgiPKt~s~ar----gmvcPvcgdRp~~ 190 (234)
.|+-|-|-..-. -+.|-+||.+-+.
T Consensus 107 ~C~sPdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 107 ECNRPDTRIIREGRISLLKCEACGAKAPL 135 (138)
T ss_dssp CCSSCSSCCEEETTTTEEECSTTSCCCCS
T ss_pred CCCCcCcEEEEcCCeEEEEccCCCCCccc
Confidence 999999987654 4789999987553
No 42
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=31.78 E-value=13 Score=26.93 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=21.2
Q ss_pred HHHhcCCCccccCCCCccccCCCCCCCC
Q 026747 163 MCLQCGIPKTFSNTRGMVCPVCSDRPPA 190 (234)
Q Consensus 163 MclqcgiPKt~s~argmvcPvcgdRp~~ 190 (234)
.|..||.--.........||.||-|-.-
T Consensus 30 ~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 30 ICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp ECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred ECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 4999998744444557889999998775
No 43
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=30.68 E-value=26 Score=24.07 Aligned_cols=30 Identities=33% Similarity=0.347 Sum_probs=19.0
Q ss_pred CccccCCCCccccCCCCCCCCCCchhhhhcCCchhHHHh
Q 026747 170 PKTFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDREK 208 (234)
Q Consensus 170 PKt~s~argmvcPvcgdRp~~~~~~~~kk~g~~~kd~ek 208 (234)
||||- -.=-.||-||.- +|+...+..++|=
T Consensus 7 pktFG----~GE~dCG~RPlF-----Ek~~~~D~~E~EL 36 (44)
T 3bei_A 7 PRTFG----SGEADCGLRPLF-----EKKSLEDKTEREL 36 (44)
T ss_dssp HHHHC----SCSTTTTCCTTT-----GGGTCCCSSHHHH
T ss_pred Ccccc----CcccccccchhH-----HHhccccccHHHH
Confidence 55554 444689999996 4555555555553
No 44
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.36 E-value=12 Score=26.80 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=18.8
Q ss_pred HHhcCCCccccCCC-CccccCCCCC
Q 026747 164 CLQCGIPKTFSNTR-GMVCPVCSDR 187 (234)
Q Consensus 164 clqcgiPKt~s~ar-gmvcPvcgdR 187 (234)
|=.|+-|-+|.... .++|+.||-.
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (69)
T 2pk7_A 11 CPICKGPLKLSADKTELISKGAGLA 35 (69)
T ss_dssp CTTTCCCCEECTTSSEEEETTTTEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 77888888887655 6899999843
No 45
>3b9f_L Prothrombin; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 1tb6_L* 2b5t_A* 1jou_A* 3gis_A 1jmo_L*
Probab=30.18 E-value=27 Score=24.48 Aligned_cols=26 Identities=31% Similarity=0.226 Sum_probs=16.8
Q ss_pred CccccCCCCCCCCCCchhhhhcCCchhHHHh
Q 026747 178 GMVCPVCSDRPPADISNESKKKGSIIKDREK 208 (234)
Q Consensus 178 gmvcPvcgdRp~~~~~~~~kk~g~~~kd~ek 208 (234)
|-.=-.||-||.- +||...+..++|=
T Consensus 16 G~GE~dCG~RPlF-----Ek~~~~D~~E~EL 41 (49)
T 3b9f_L 16 GSGEADCGLRPLF-----EKKSLEDKTEREL 41 (49)
T ss_dssp CSCSTTTTCCTTT-----GGGTCCCSSHHHH
T ss_pred CCcccccccchhH-----hHhccccccHHHH
Confidence 4444689999996 4555555555553
No 46
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=30.15 E-value=23 Score=26.44 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=28.3
Q ss_pred cccccccccc---CCCChhhHHHHHHHH-HhcCC------CccccCCCCccc
Q 026747 140 TQGVKRVATA---TNPNAEDAAELLRMC-LQCGI------PKTFSNTRGMVC 181 (234)
Q Consensus 140 ~~~~kR~~~a---~np~aedaadlLrMc-lqcgi------PKt~s~argmvc 181 (234)
-.+|.|++-. .||..++-++.++.. +.|-+ |+-|..-+|+|.
T Consensus 14 r~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~E~~K~yPr~w~~~~GRVr 65 (87)
T 1lng_A 14 RREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVE 65 (87)
T ss_dssp TTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEEETTCCCGGGTTSCCCEEE
T ss_pred hhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEccCCCCCcccccCCceEE
Confidence 4677888765 499999988888765 66655 444444446554
No 47
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=29.11 E-value=12 Score=26.63 Aligned_cols=25 Identities=24% Similarity=0.953 Sum_probs=17.1
Q ss_pred HHHHHhcCCCccccCCCCccccCCCCCCCC
Q 026747 161 LRMCLQCGIPKTFSNTRGMVCPVCSDRPPA 190 (234)
Q Consensus 161 LrMclqcgiPKt~s~argmvcPvcgdRp~~ 190 (234)
+|-|-+||+ |+- .-+||.||..-..
T Consensus 6 mr~C~~Cgv---YTL--k~~CP~CG~~T~~ 30 (60)
T 2apo_B 6 MKKCPKCGL---YTL--KEICPKCGEKTVI 30 (60)
T ss_dssp CEECTTTCC---EES--SSBCSSSCSBCBC
T ss_pred ceeCCCCCC---Eec--cccCcCCCCcCCC
Confidence 344788865 443 5789999976544
No 48
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=28.23 E-value=32 Score=26.46 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=31.4
Q ss_pred cccccccccc---CCCChhhHHHHHHHH-HhcCC-----CccccCCCCccc
Q 026747 140 TQGVKRVATA---TNPNAEDAAELLRMC-LQCGI-----PKTFSNTRGMVC 181 (234)
Q Consensus 140 ~~~~kR~~~a---~np~aedaadlLrMc-lqcgi-----PKt~s~argmvc 181 (234)
-.+|.|++-. .||..++-++.|+.. +.|-| |+-|...+|+|.
T Consensus 17 r~eGRRv~k~~aV~nP~~~EI~~a~~~Lgl~~~vE~K~yPr~w~~~~GRVr 67 (104)
T 1kvn_A 17 RAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWEEGGRVV 67 (104)
T ss_dssp TTTTCCSCGGGCCSSCCHHHHHHHHHHHTSSEEECCCTTTCSSCSSCCEEE
T ss_pred hhhCCccCHHHhccCCCHHHHHHHHHHcCCCeEEecCCCCchhhcCCCEEE
Confidence 4667888765 599999999998876 77776 666664566665
No 49
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.65 E-value=13 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.570 Sum_probs=15.9
Q ss_pred HHHHHhcCCCcccc-CCCCccccCCC
Q 026747 161 LRMCLQCGIPKTFS-NTRGMVCPVCS 185 (234)
Q Consensus 161 LrMclqcgiPKt~s-~argmvcPvcg 185 (234)
.+.|-+||.+.... +..-++|+.||
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSC
T ss_pred cccCCCCCCceEEecCCCeEECCCCC
Confidence 35577888765443 33357888887
No 50
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.64 E-value=13 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.503 Sum_probs=18.0
Q ss_pred HHhcCCCccccCCC-CccccCCCCC
Q 026747 164 CLQCGIPKTFSNTR-GMVCPVCSDR 187 (234)
Q Consensus 164 clqcgiPKt~s~ar-gmvcPvcgdR 187 (234)
|=.|+-|-+|.... .++|+.||-.
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2hf1_A 11 CPLCKGPLVFDKSKDELICKGDRLA 35 (68)
T ss_dssp CTTTCCBCEEETTTTEEEETTTTEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 66788888887654 6889999843
No 51
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=26.20 E-value=69 Score=26.02 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=55.0
Q ss_pred cCCCCCcceEeecceee----ccchhhcccccCC----CCCCCCCccccccccccccCCCChhhHHHHHH-------HHH
Q 026747 101 KKELPAGAVMEAKAQLV----GIHDRVRSDMEGD----QPPASVSSTTQGVKRVATATNPNAEDAAELLR-------MCL 165 (234)
Q Consensus 101 kK~~P~gAVveAKpqlv----~i~eRvrsd~~g~----~~p~s~s~~~~~~kR~~~a~np~aedaadlLr-------Mcl 165 (234)
=|-||+-+++|-|-+++ -|-+++..+..=. ..+=++++.-. +.|.+--..=.+.+-.++|+ +|-
T Consensus 30 ykmP~~~v~~eGkKTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~~~~~~i~~~L~~yI~~yVlC~ 108 (148)
T 2d74_B 30 FEVPGALVTIEGNKTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-GRRVVLQGRFTPYLIANKLKKYIKEYVICP 108 (148)
T ss_dssp CCCCCCCEEEETTEEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-TTEEEESSCCCHHHHHHHHHHHHHHHSSCS
T ss_pred eecCCCeEEEecCeEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-CCEEEEEeeeCHHHHHHHHHHHHHHEEECC
Confidence 35667777778775543 3444444441100 01112222233 55666555556788888887 489
Q ss_pred hcCCCccccCCC----CccccCCCCCCCCC
Q 026747 166 QCGIPKTFSNTR----GMVCPVCSDRPPAD 191 (234)
Q Consensus 166 qcgiPKt~s~ar----gmvcPvcgdRp~~~ 191 (234)
.||-|-|-..-. -+.|-+||.+-+.+
T Consensus 109 ~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~ 138 (148)
T 2d74_B 109 VCGSPDTKIIKRDRFHFLKCEACGAETPIQ 138 (148)
T ss_dssp SSCCTTCCCCBSSSSBCCCCSSSCCCCCCC
T ss_pred CCCCcCcEEEEeCCEEEEEecCCCCCcccc
Confidence 999999988754 47899999976654
No 52
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=24.47 E-value=14 Score=35.67 Aligned_cols=18 Identities=33% Similarity=1.119 Sum_probs=0.0
Q ss_pred HHhcCCCccccCCCC-----ccccCCC
Q 026747 164 CLQCGIPKTFSNTRG-----MVCPVCS 185 (234)
Q Consensus 164 clqcgiPKt~s~arg-----mvcPvcg 185 (234)
|..|| |.+..| ..||.||
T Consensus 543 C~~CG----y~~~~~~~~~~~~CP~Cg 565 (605)
T 1h7b_A 543 CFTCG----STHEMTPTENGFVCSICG 565 (605)
T ss_dssp T--------------------------
T ss_pred CcccC----CcCccCccccCCcCCCCC
No 53
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.26 E-value=29 Score=18.37 Aligned_cols=15 Identities=33% Similarity=0.802 Sum_probs=10.6
Q ss_pred cCCCCccccCCCCCC
Q 026747 174 SNTRGMVCPVCSDRP 188 (234)
Q Consensus 174 s~argmvcPvcgdRp 188 (234)
++.+...|+.||..=
T Consensus 3 ~~~k~~~C~~C~k~f 17 (35)
T 2elx_A 3 SGSSGYVCALCLKKF 17 (35)
T ss_dssp CCCCSEECSSSCCEE
T ss_pred CCCCCeECCCCcchh
Confidence 345567899998653
No 54
>3e6p_L Prothrombin; meizothrombin, allostery, linkage, Na+ binding, AC phase, blood coagulation, cleavage on PAIR of basic residue disease mutation; HET: DFK NAG; 2.10A {Homo sapiens} PDB: 1a0h_A*
Probab=23.80 E-value=55 Score=26.75 Aligned_cols=30 Identities=37% Similarity=0.416 Sum_probs=20.4
Q ss_pred CccccCCCCccccCCCCCCCCCCchhhhhcCCchhHHHh
Q 026747 170 PKTFSNTRGMVCPVCSDRPPADISNESKKKGSIIKDREK 208 (234)
Q Consensus 170 PKt~s~argmvcPvcgdRp~~~~~~~~kk~g~~~kd~ek 208 (234)
|||| |-.=.+||-||.- +||+.++..++|=
T Consensus 121 ~~tf----g~ge~~cg~rp~f-----e~~~~~d~~e~el 150 (158)
T 3e6p_L 121 PRTF----GSGEADCGLRPLF-----EKKSLEDKTEREL 150 (158)
T ss_dssp SSSS----CSCGGGTTCCTTT-----GGGTCCCTTHHHH
T ss_pred cccc----CCCccccCcCccc-----cccccccccHHHH
Confidence 5555 4444779999996 5666666666663
No 55
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.65 E-value=25 Score=20.22 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=9.5
Q ss_pred ccCCCCccccCCC
Q 026747 173 FSNTRGMVCPVCS 185 (234)
Q Consensus 173 ~s~argmvcPvcg 185 (234)
-...+...||.||
T Consensus 33 H~~~~~~~C~~cg 45 (45)
T 2epq_A 33 HDGSVGKSGPSSG 45 (45)
T ss_dssp HSCCCCCCCCCCC
T ss_pred ccCCCCCCCcCCC
Confidence 3456678899887
No 56
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.46 E-value=15 Score=26.26 Aligned_cols=24 Identities=4% Similarity=0.001 Sum_probs=17.3
Q ss_pred HHhcCCCccccCCC-CccccCCCCC
Q 026747 164 CLQCGIPKTFSNTR-GMVCPVCSDR 187 (234)
Q Consensus 164 clqcgiPKt~s~ar-gmvcPvcgdR 187 (234)
|=.|+-|-+|.... .++|+.||-.
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2jr6_A 11 CPVTKGRLEYHQDKQELWSRQAKLA 35 (68)
T ss_dssp CSSSCCBCEEETTTTEEEETTTTEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 66788888887644 5788888743
No 57
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.26 E-value=31 Score=18.74 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=11.4
Q ss_pred ccCCCCccccCCCCCC
Q 026747 173 FSNTRGMVCPVCSDRP 188 (234)
Q Consensus 173 ~s~argmvcPvcgdRp 188 (234)
.++.+-..|+.|+..=
T Consensus 4 h~~~k~~~C~~C~k~f 19 (37)
T 2elp_A 4 GSSGRAMKCPYCDFYF 19 (37)
T ss_dssp CCCCCCEECSSSSCEE
T ss_pred CCCCCCeECCCCChhh
Confidence 3455678999998653
No 58
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.19 E-value=45 Score=17.99 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=12.1
Q ss_pred cccCCCCccccCCCCCCC
Q 026747 172 TFSNTRGMVCPVCSDRPP 189 (234)
Q Consensus 172 t~s~argmvcPvcgdRp~ 189 (234)
+-++.+-..|+.||..-.
T Consensus 5 ~h~~~k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 5 GSTGIKPFQCPDCDRSFS 22 (37)
T ss_dssp TTCCSSSBCCTTTCCCBS
T ss_pred cCCCCCCccCCCCCcccC
Confidence 344556678999986543
No 59
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.36 E-value=34 Score=18.52 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=11.6
Q ss_pred ccCCCCccccCCCCCCC
Q 026747 173 FSNTRGMVCPVCSDRPP 189 (234)
Q Consensus 173 ~s~argmvcPvcgdRp~ 189 (234)
-++.+-..|++||..=.
T Consensus 4 h~~~k~~~C~~C~k~f~ 20 (37)
T 2elo_A 4 GSSGRSYSCPVCEKSFS 20 (37)
T ss_dssp CCCCCCCEETTTTEECS
T ss_pred CCCCCCcCCCCCCCccC
Confidence 34556788999986533
No 60
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.25 E-value=17 Score=26.20 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=18.2
Q ss_pred HHhcCCCccccCCC-CccccCCCCC
Q 026747 164 CLQCGIPKTFSNTR-GMVCPVCSDR 187 (234)
Q Consensus 164 clqcgiPKt~s~ar-gmvcPvcgdR 187 (234)
|=.|+-|-.|.... .++|+.||-.
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (70)
T 2js4_A 11 CPVCKGRLEFQRAQAELVCNADRLA 35 (70)
T ss_dssp CTTTCCBEEEETTTTEEEETTTTEE
T ss_pred CCCCCCcCEEeCCCCEEEcCCCCce
Confidence 66788888887654 6899999854
No 61
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=21.90 E-value=23 Score=28.90 Aligned_cols=24 Identities=25% Similarity=0.754 Sum_probs=17.1
Q ss_pred HHhcCCCc--cccCCC-CccccCCCCC
Q 026747 164 CLQCGIPK--TFSNTR-GMVCPVCSDR 187 (234)
Q Consensus 164 clqcgiPK--t~s~ar-gmvcPvcgdR 187 (234)
|..||-|. .|+-.. |.+|+.|...
T Consensus 153 C~~cg~~~~~~fs~~~Gg~~c~~~~~~ 179 (244)
T 1u5k_A 153 CARCGAPDPEHPDPLGGQLLCSKCAAL 179 (244)
T ss_dssp CTTTCCBSCCEECTTTSSEECTTTCSS
T ss_pred cccCCCCCCCcEecccCEEECcccCCC
Confidence 88899872 355555 5899999643
No 62
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=21.73 E-value=11 Score=27.94 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=20.0
Q ss_pred HHhcCCCccccCCC-CccccCCCCC
Q 026747 164 CLQCGIPKTFSNTR-GMVCPVCSDR 187 (234)
Q Consensus 164 clqcgiPKt~s~ar-gmvcPvcgdR 187 (234)
|-.||-+..|-.+- -+.|+-||--
T Consensus 30 Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 30 CPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp CSSSCCEEEEEEETTEEEETTTCCE
T ss_pred CCCCCCcceeccCCCeEECCCCCCE
Confidence 78899988888777 4889999874
No 63
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=21.53 E-value=20 Score=36.64 Aligned_cols=24 Identities=33% Similarity=0.844 Sum_probs=19.9
Q ss_pred HHhcCCCccccCCC-CccccCCCCC
Q 026747 164 CLQCGIPKTFSNTR-GMVCPVCSDR 187 (234)
Q Consensus 164 clqcgiPKt~s~ar-gmvcPvcgdR 187 (234)
|-.||--++|..-. +..|++||+.
T Consensus 1064 c~~cG~~~~~~~~~~~~~c~~~~~~ 1088 (1131)
T 4ayb_B 1064 CDQCGYIGWYDKNKNKYVCPIHGDK 1088 (1131)
T ss_dssp CSSSCCBCEEETTTTEEECSSCSSS
T ss_pred ccCCCceEEEeccCCceeCCccCCC
Confidence 78899999997655 7789999974
No 64
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=21.27 E-value=22 Score=29.18 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=7.4
Q ss_pred CccccCCCCC
Q 026747 178 GMVCPVCSDR 187 (234)
Q Consensus 178 gmvcPvcgdR 187 (234)
...||+||+.
T Consensus 14 ~~~CP~Cg~~ 23 (255)
T 1nui_A 14 HIPCDNCGSS 23 (255)
T ss_dssp EECCSSSCCS
T ss_pred CCcCCCCCCC
Confidence 5678888874
No 65
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=20.85 E-value=24 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.778 Sum_probs=18.4
Q ss_pred HHHHhcCCCccccCC-----CCccccCCC
Q 026747 162 RMCLQCGIPKTFSNT-----RGMVCPVCS 185 (234)
Q Consensus 162 rMclqcgiPKt~s~a-----rgmvcPvcg 185 (234)
+.|-+||.+.++... .-.+|+.||
T Consensus 4 ~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 4 KFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred ccCchhCCccccccccCCCCcceECCCCC
Confidence 468999999988532 236899998
No 66
>1k0p_A DNA polymerase alpha catalytic subunit; zinc finger protein, DNA binding domain, transferase; HET: DNA; NMR {Synthetic} SCOP: g.67.1.1 PDB: 1k18_A*
Probab=20.51 E-value=50 Score=20.62 Aligned_cols=17 Identities=41% Similarity=1.046 Sum_probs=13.1
Q ss_pred CCccccCCCCccccCCCC
Q 026747 169 IPKTFSNTRGMVCPVCSD 186 (234)
Q Consensus 169 iPKt~s~argmvcPvcgd 186 (234)
+|.+|+. +|-.||+|+.
T Consensus 14 ~pl~~~~-~gP~C~~C~~ 30 (31)
T 1k0p_A 14 LPLQFSR-TGPLCPACMK 30 (31)
T ss_dssp TTSCSCS-SSSCSTTCCC
T ss_pred ccEeeec-cCCcCccccC
Confidence 5777766 5799999974
No 67
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.44 E-value=37 Score=18.12 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=10.6
Q ss_pred cCCCCccccCCCCCC
Q 026747 174 SNTRGMVCPVCSDRP 188 (234)
Q Consensus 174 s~argmvcPvcgdRp 188 (234)
+..+-..|+.||..=
T Consensus 5 ~~~k~~~C~~C~k~f 19 (36)
T 2elt_A 5 SSGKPYKCPQCSYAS 19 (36)
T ss_dssp CCCCSEECSSSSCEE
T ss_pred CCCCCCCCCCCCccc
Confidence 445667899998643
No 68
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.24 E-value=22 Score=22.72 Aligned_cols=10 Identities=40% Similarity=1.328 Sum_probs=8.1
Q ss_pred CCccccCCCC
Q 026747 177 RGMVCPVCSD 186 (234)
Q Consensus 177 rgmvcPvcgd 186 (234)
-|..||.|-.
T Consensus 4 EGFiCP~C~~ 13 (34)
T 3mjh_B 4 EGFICPQCMK 13 (34)
T ss_dssp EEEECTTTCC
T ss_pred cccCCcHHHH
Confidence 3799999964
Done!