Query 026748
Match_columns 234
No_of_seqs 304 out of 1644
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:08:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2738 Putative methionine am 100.0 2.8E-51 6.1E-56 363.6 15.5 167 68-234 69-240 (369)
2 PLN03158 methionine aminopepti 100.0 2E-42 4.3E-47 323.2 19.4 167 68-234 90-261 (396)
3 COG0024 Map Methionine aminope 100.0 9E-31 2E-35 231.4 15.1 126 109-234 4-131 (255)
4 PRK12897 methionine aminopepti 100.0 9.7E-30 2.1E-34 223.4 16.2 127 108-234 2-128 (248)
5 PRK12318 methionine aminopepti 100.0 6.3E-29 1.4E-33 224.0 17.3 127 108-234 41-169 (291)
6 PRK07281 methionine aminopepti 100.0 8.3E-29 1.8E-33 222.9 15.4 128 107-234 1-159 (286)
7 TIGR00500 met_pdase_I methioni 100.0 1.9E-28 4.2E-33 214.1 16.6 126 109-234 2-127 (247)
8 PRK12896 methionine aminopepti 100.0 7.1E-28 1.5E-32 211.1 16.5 129 106-234 6-134 (255)
9 PRK05716 methionine aminopepti 99.9 3.3E-27 7.1E-32 206.5 15.8 128 107-234 2-129 (252)
10 COG0006 PepP Xaa-Pro aminopept 99.9 9.1E-28 2E-32 222.8 13.0 127 103-234 147-273 (384)
11 PRK10879 proline aminopeptidas 99.9 1E-26 2.3E-31 220.0 13.9 126 104-234 167-293 (438)
12 PRK09795 aminopeptidase; Provi 99.9 1.1E-26 2.4E-31 214.1 13.3 126 104-234 121-251 (361)
13 TIGR02993 ectoine_eutD ectoine 99.9 4.4E-26 9.5E-31 212.6 11.8 131 103-234 151-281 (391)
14 PRK15173 peptidase; Provisiona 99.9 3.3E-25 7.2E-30 202.3 12.5 127 102-234 87-213 (323)
15 cd01090 Creatinase Creatine am 99.9 1.1E-24 2.4E-29 189.6 14.3 119 116-234 1-120 (228)
16 PRK14575 putative peptidase; P 99.9 7E-25 1.5E-29 205.6 13.2 126 103-234 171-296 (406)
17 cd01086 MetAP1 Methionine Amin 99.9 2.1E-24 4.6E-29 187.2 14.9 119 116-234 1-119 (238)
18 cd01087 Prolidase Prolidase. E 99.9 3.1E-24 6.8E-29 187.1 13.8 113 116-234 1-114 (243)
19 PRK14576 putative endopeptidas 99.9 2.7E-24 5.9E-29 201.6 13.3 126 103-234 170-295 (405)
20 PRK13607 proline dipeptidase; 99.9 4.8E-24 1E-28 202.3 12.8 125 103-234 154-279 (443)
21 cd01092 APP-like Similar to Pr 99.9 2.3E-23 4.9E-28 176.1 14.0 114 116-234 1-114 (208)
22 TIGR00495 crvDNA_42K 42K curve 99.9 2.6E-23 5.6E-28 194.4 15.2 126 108-234 11-149 (389)
23 cd01085 APP X-Prolyl Aminopept 99.9 8.3E-23 1.8E-27 177.8 12.1 113 117-234 5-122 (224)
24 PF00557 Peptidase_M24: Metall 99.9 4.8E-22 1E-26 168.5 12.7 111 117-233 1-112 (207)
25 cd01089 PA2G4-like Related to 99.9 1.4E-21 3E-26 169.8 13.8 117 116-234 1-131 (228)
26 PTZ00053 methionine aminopepti 99.9 2.2E-21 4.8E-26 184.4 15.5 120 106-234 148-274 (470)
27 cd01066 APP_MetAP A family inc 99.9 1.9E-21 4.1E-26 161.9 12.8 112 116-233 1-112 (207)
28 TIGR00501 met_pdase_II methion 99.9 9.8E-21 2.1E-25 171.0 14.3 110 113-233 2-114 (295)
29 PRK08671 methionine aminopepti 99.8 2.9E-20 6.3E-25 167.6 13.4 109 115-234 1-112 (291)
30 cd01088 MetAP2 Methionine Amin 99.8 1.7E-19 3.7E-24 162.6 13.2 108 116-234 1-111 (291)
31 KOG2414 Putative Xaa-Pro amino 99.8 3.7E-20 8.1E-25 171.0 8.0 126 103-233 221-347 (488)
32 KOG2737 Putative metallopeptid 99.8 8.1E-20 1.8E-24 167.5 9.9 128 102-233 177-309 (492)
33 cd01091 CDC68-like Related to 99.8 2.7E-18 5.8E-23 151.3 11.2 117 116-234 1-130 (243)
34 KOG2776 Metallopeptidase [Gene 99.3 1.9E-11 4.2E-16 111.9 9.5 112 109-222 14-134 (398)
35 KOG2413 Xaa-Pro aminopeptidase 99.2 3.9E-11 8.4E-16 115.9 8.7 128 102-233 299-436 (606)
36 KOG1189 Global transcriptional 98.9 6.2E-09 1.3E-13 102.8 9.2 134 94-232 121-266 (960)
37 KOG2775 Metallopeptidase [Gene 98.8 3.9E-08 8.5E-13 88.9 9.6 103 111-219 80-189 (397)
38 COG5406 Nucleosome binding fac 98.2 4.5E-06 9.9E-11 81.8 7.5 130 100-232 160-307 (1001)
39 cd01066 APP_MetAP A family inc 97.9 0.00024 5.2E-09 58.7 12.0 102 117-220 102-204 (207)
40 cd01092 APP-like Similar to Pr 97.7 0.00046 9.9E-09 58.0 10.9 96 117-219 103-204 (208)
41 PRK05716 methionine aminopepti 97.5 0.0011 2.4E-08 57.9 11.2 100 118-220 119-240 (252)
42 cd01086 MetAP1 Methionine Amin 97.5 0.0021 4.5E-08 55.6 11.9 101 117-220 108-230 (238)
43 PRK15173 peptidase; Provisiona 97.5 0.0016 3.4E-08 59.8 11.5 101 117-220 202-306 (323)
44 TIGR00500 met_pdase_I methioni 97.4 0.0021 4.5E-08 56.1 11.7 100 118-220 117-238 (247)
45 PRK14575 putative peptidase; P 97.4 0.002 4.3E-08 60.9 11.6 100 118-220 286-389 (406)
46 cd01090 Creatinase Creatine am 97.4 0.0025 5.4E-08 55.5 11.2 100 118-220 110-220 (228)
47 PRK09795 aminopeptidase; Provi 97.4 0.0026 5.7E-08 58.8 11.9 101 113-220 236-342 (361)
48 PRK08671 methionine aminopepti 97.3 0.0029 6.3E-08 57.2 11.5 95 118-219 102-205 (291)
49 PRK14576 putative endopeptidas 97.3 0.0032 7E-08 59.4 12.0 101 117-220 284-388 (405)
50 TIGR02993 ectoine_eutD ectoine 97.3 0.0027 5.8E-08 59.6 11.2 100 117-220 270-374 (391)
51 cd01088 MetAP2 Methionine Amin 97.3 0.0025 5.4E-08 57.6 10.5 95 118-219 101-204 (291)
52 PRK12897 methionine aminopepti 97.3 0.0028 6E-08 55.7 10.2 100 118-220 118-239 (248)
53 PRK12318 methionine aminopepti 97.2 0.0044 9.6E-08 56.1 11.2 88 117-207 158-248 (291)
54 PF00557 Peptidase_M24: Metall 97.2 0.0034 7.5E-08 52.9 9.8 97 119-219 104-206 (207)
55 cd01091 CDC68-like Related to 97.1 0.0047 1E-07 54.5 10.3 100 117-220 119-234 (243)
56 PRK12896 methionine aminopepti 97.1 0.0071 1.5E-07 52.8 10.9 100 118-220 124-246 (255)
57 cd01087 Prolidase Prolidase. E 97.0 0.0078 1.7E-07 52.4 10.9 102 118-220 104-235 (243)
58 PRK07281 methionine aminopepti 97.0 0.0071 1.5E-07 54.8 10.6 85 118-205 149-237 (286)
59 cd01089 PA2G4-like Related to 96.9 0.011 2.3E-07 51.3 10.5 98 117-220 120-220 (228)
60 TIGR00501 met_pdase_II methion 96.9 0.0074 1.6E-07 54.8 9.4 93 119-218 106-207 (295)
61 PLN03158 methionine aminopepti 96.7 0.018 4E-07 54.5 11.1 84 119-205 252-339 (396)
62 COG0006 PepP Xaa-Pro aminopept 96.6 0.022 4.7E-07 53.1 11.0 97 118-220 263-367 (384)
63 TIGR00495 crvDNA_42K 42K curve 96.4 0.031 6.8E-07 52.8 10.5 99 118-217 139-247 (389)
64 PTZ00053 methionine aminopepti 96.4 0.034 7.4E-07 53.8 10.7 101 118-218 264-375 (470)
65 COG0024 Map Methionine aminope 96.0 0.077 1.7E-06 47.5 10.6 93 117-212 120-217 (255)
66 PRK10879 proline aminopeptidas 96.0 0.092 2E-06 50.2 11.7 100 119-219 284-410 (438)
67 cd01085 APP X-Prolyl Aminopept 95.0 0.39 8.5E-06 41.7 11.3 97 119-219 113-215 (224)
68 PRK13607 proline dipeptidase; 94.5 0.32 7E-06 46.7 10.1 89 119-207 270-391 (443)
69 KOG2738 Putative methionine am 87.2 3.8 8.2E-05 37.9 8.4 82 117-201 229-314 (369)
70 KOG1189 Global transcriptional 86.9 2.5 5.4E-05 43.3 7.7 102 118-223 258-371 (960)
71 cd01666 TGS_DRG_C TGS_DRG_C: 76.1 9.9 0.00022 27.7 5.7 52 137-199 21-73 (75)
72 COG5406 Nucleosome binding fac 70.7 15 0.00034 37.2 7.2 79 121-203 302-385 (1001)
73 PRK01490 tig trigger factor; P 56.6 48 0.001 31.4 7.6 58 139-220 130-191 (435)
74 cd04938 TGS_Obg-like TGS_Obg-l 51.1 31 0.00067 25.0 4.2 47 137-199 28-74 (76)
75 TIGR00115 tig trigger factor. 48.5 76 0.0016 29.7 7.5 58 139-220 118-180 (408)
76 PF05184 SapB_1: Saposin-like 45.3 43 0.00094 20.3 3.7 34 122-155 3-36 (39)
77 PF03477 ATP-cone: ATP cone do 42.5 21 0.00046 25.9 2.2 35 125-159 40-74 (90)
78 PF00254 FKBP_C: FKBP-type pep 42.1 1.3E+02 0.0028 21.6 6.6 42 188-229 2-52 (94)
79 KOG2413 Xaa-Pro aminopeptidase 38.6 98 0.0021 31.2 6.7 82 119-208 428-520 (606)
80 cd01669 TGS_Ygr210_C TGS_Ygr21 36.3 1E+02 0.0023 22.3 5.0 48 137-199 27-74 (76)
81 KOG2414 Putative Xaa-Pro amino 33.4 2.4E+02 0.0052 27.5 8.1 90 110-205 334-438 (488)
82 COG0544 Tig FKBP-type peptidyl 32.3 1.1E+02 0.0023 29.7 5.7 45 140-208 131-175 (441)
83 PRK05423 hypothetical protein; 29.8 76 0.0016 24.5 3.4 29 128-156 43-71 (104)
84 PRK00464 nrdR transcriptional 29.7 1.4E+02 0.003 24.7 5.3 38 123-160 85-122 (154)
85 PF10415 FumaraseC_C: Fumarase 27.1 84 0.0018 21.4 3.0 35 118-152 10-49 (55)
86 PF09506 Salt_tol_Pase: Glucos 26.8 2.5E+02 0.0054 26.6 6.9 122 112-234 98-275 (381)
87 TIGR02399 salt_tol_Pase glucos 25.4 2.6E+02 0.0057 26.5 6.8 122 112-234 104-280 (389)
88 PF04363 DUF496: Protein of un 25.3 2.9E+02 0.0062 21.1 5.8 37 118-155 27-63 (95)
89 COG1163 DRG Predicted GTPase [ 24.2 1.8E+02 0.0039 27.5 5.5 48 139-199 312-362 (365)
90 PF13798 PCYCGC: Protein of un 23.8 1.8E+02 0.004 24.3 5.0 46 117-162 108-153 (158)
91 TIGR03147 cyt_nit_nrfF cytochr 23.6 1.1E+02 0.0023 24.7 3.5 30 123-152 56-85 (126)
92 COG5011 Uncharacterized protei 23.0 1.8E+02 0.0039 25.6 4.9 56 141-204 16-72 (228)
93 COG3001 Uncharacterized protei 21.7 1.8E+02 0.004 26.5 4.9 42 190-232 201-242 (286)
94 TIGR02172 Fb_sc_TIGR02172 Fibr 21.6 52 0.0011 28.3 1.4 49 179-227 153-204 (226)
95 PF00249 Myb_DNA-binding: Myb- 21.2 2.1E+02 0.0046 18.1 4.0 43 110-152 3-46 (48)
96 PF02824 TGS: TGS domain; Int 21.1 1.4E+02 0.003 20.3 3.2 46 137-199 13-58 (60)
97 PF14615 Rsa3: Ribosome-assemb 20.5 30 0.00065 23.1 -0.2 29 113-141 15-43 (47)
No 1
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-51 Score=363.55 Aligned_cols=167 Identities=65% Similarity=1.054 Sum_probs=158.8
Q ss_pred CCCCccCCCcccCCCCCCCCCCCCCCCCccCCCC----CCCCC-CCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 026748 68 PNRRRKRLRPGKVSPHRPVPDHIPRPPYVNSQKP----IGIVS-GPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGIT 142 (234)
Q Consensus 68 ~~~~~~~l~~g~~s~~~~vp~~i~~p~y~~~~~~----~~~~~-~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvT 142 (234)
.|.++++||||++||+|.||+||+||+|+.+|.+ +.+.. ...|++++||++||+||++++++++++..+++||+|
T Consensus 69 ~~~~~g~Lr~~pvsprr~VP~hI~rPdya~~g~s~se~~~~~s~~i~i~~~e~ie~mR~ac~LarevLd~Aa~~v~PgvT 148 (369)
T KOG2738|consen 69 KFRFTGPLRPGPVSPRRPVPDHIPRPDYADSGVSLSEQPEISSNEIKILDPEGIEGMRKACRLAREVLDYAATLVRPGVT 148 (369)
T ss_pred cccccCCccccCCCCCCcCCccCCCCchhhcCCcccccccccccceeccCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 4899999999999999999999999999999764 22322 467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCC
Q 026748 143 TDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD 222 (234)
Q Consensus 143 e~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s 222 (234)
++|||+++|++++++|+|||||||.+||+++|+|+|+++|||+|+.|+||+|||||||++++++|||+|+++||+||+++
T Consensus 149 TdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGIPD~RpLedGDIvNiDVtvY~~GyHGDlneTffvG~Vd 228 (369)
T KOG2738|consen 149 TDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNETFFVGNVD 228 (369)
T ss_pred HHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheeecCCCCcCcCCCCCEEeEEEEEEeccccCccccceEeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q 026748 223 DEARNLVKGPCR 234 (234)
Q Consensus 223 ~e~~~l~e~~~E 234 (234)
++.++|+++++|
T Consensus 229 e~~k~LVkvT~E 240 (369)
T KOG2738|consen 229 EKAKKLVKVTRE 240 (369)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 2
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=2e-42 Score=323.17 Aligned_cols=167 Identities=51% Similarity=0.863 Sum_probs=159.7
Q ss_pred CCCCccCCCcccCCCCCCCCCCCCCCCCccCCCCC-----CCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 026748 68 PNRRRKRLRPGKVSPHRPVPDHIPRPPYVNSQKPI-----GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGIT 142 (234)
Q Consensus 68 ~~~~~~~l~~g~~s~~~~vp~~i~~p~y~~~~~~~-----~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvT 142 (234)
.|+|+++||||++||++.||+||++|+|+.++.+. .+.+.|.|||++||+.||+|+++++++++++.+.++||+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~p~~i~~p~y~~~~~~~~~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvT 169 (396)
T PLN03158 90 DFDWTGPLRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVT 169 (396)
T ss_pred CCCCCcccccCCCCCCCCCCccCCCCccccCCCCccccccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 48999999999999999999999999999887542 3557899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCC
Q 026748 143 TDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD 222 (234)
Q Consensus 143 e~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s 222 (234)
|.||+++++++++++|++|++++|.+||+++|+|.|+++|||+|++++|++||+|++|++++++||++|++|||+||+++
T Consensus 170 e~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N~~i~Hgip~~r~L~~GDiV~iDvg~~~~GY~aD~tRT~~VG~~~ 249 (396)
T PLN03158 170 TDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVD 249 (396)
T ss_pred HHHHHHHHHHHHHHcCCccccccccCCCceeeecccccccCCCCCCccCCCCCEEEEEEeEEECCEEEeEEeEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q 026748 223 DEARNLVKGPCR 234 (234)
Q Consensus 223 ~e~~~l~e~~~E 234 (234)
+++++++++++|
T Consensus 250 ~e~~~l~e~~~e 261 (396)
T PLN03158 250 EASRQLVKCTYE 261 (396)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 3
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9e-31 Score=231.42 Aligned_cols=126 Identities=44% Similarity=0.806 Sum_probs=120.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCC-
Q 026748 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD- 187 (234)
Q Consensus 109 ~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~- 187 (234)
.+|+++||++||+||+|+.++++++.+.++||+|+.||+.++++++.++|++|++++|.+||..+|+|+|+++|||+|+
T Consensus 4 ~ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~d 83 (255)
T COG0024 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPGD 83 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCH-HHHHHHhhhcC
Q 026748 188 SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD-EARNLVKGPCR 234 (234)
Q Consensus 188 ~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~-e~~~l~e~~~E 234 (234)
+++|++||+|+||+|+.++||++|.++||.||+.++ ..++|.++++|
T Consensus 84 ~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~e 131 (255)
T COG0024 84 KKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKE 131 (255)
T ss_pred CcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHH
Confidence 678999999999999999999999999999997664 77779998875
No 4
>PRK12897 methionine aminopeptidase; Reviewed
Probab=99.97 E-value=9.7e-30 Score=223.40 Aligned_cols=127 Identities=35% Similarity=0.600 Sum_probs=120.8
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCC
Q 026748 108 PEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD 187 (234)
Q Consensus 108 R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~ 187 (234)
..|||++||+.||+|+++++++++++.+.++||+||.||++.+++.+.++|+.....+|.+|+.++|+|+|+..||+.|+
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n~~~~H~~p~ 81 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFPA 81 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccCCEeecCCCC
Confidence 47999999999999999999999999999999999999999999999999998765567789999999999999999999
Q ss_pred CCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 188 SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 188 ~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
+++|++||+|++|+|+.++||++|++|||++|+++++++++|+++++
T Consensus 82 ~~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~ 128 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAEN 128 (248)
T ss_pred CcccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764
No 5
>PRK12318 methionine aminopeptidase; Provisional
Probab=99.96 E-value=6.3e-29 Score=224.00 Aligned_cols=127 Identities=35% Similarity=0.681 Sum_probs=120.1
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCeeeecCCCceeccC
Q 026748 108 PEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYG--GFPKSVCTSVNECICHGI 185 (234)
Q Consensus 108 R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~--gFp~~v~sg~N~~~~Hg~ 185 (234)
+.|||++||+.||+|++|++++++++.+.++||+||.||++++++.+.+.|+.|++++|. +||+++|+|.|+.++|+.
T Consensus 41 i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~~g~n~~~~H~~ 120 (291)
T PRK12318 41 IIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGI 120 (291)
T ss_pred eEECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceEeeccceeecCC
Confidence 359999999999999999999999999999999999999999999999999988877774 599999999999999999
Q ss_pred CCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 186 PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 186 P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|++++|++||+|++|+++.++||++|++|||++|+++++++++|+++++
T Consensus 121 p~~~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~ 169 (291)
T PRK12318 121 PNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLE 169 (291)
T ss_pred CCCCccCCCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998763
No 6
>PRK07281 methionine aminopeptidase; Reviewed
Probab=99.96 E-value=8.3e-29 Score=222.89 Aligned_cols=128 Identities=23% Similarity=0.418 Sum_probs=120.5
Q ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCeeeecCCCcee
Q 026748 107 GPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGY----GGFPKSVCTSVNECIC 182 (234)
Q Consensus 107 ~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y----~gFp~~v~sg~N~~~~ 182 (234)
|..|||++||+.||+|++|++++++++.+.++||+||.||++.++..+.+.|+.++.+++ .+||+++|+|.|+.++
T Consensus 1 m~~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~ 80 (286)
T PRK07281 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVA 80 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEecccccc
Confidence 457999999999999999999999999999999999999999999999999998877664 4699999999999999
Q ss_pred ccCCCCCCCCCCCEEEEEEee---------------------------EECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 183 HGIPDSRALEDGDTINIDVTV---------------------------YLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 183 Hg~P~~r~L~~GDiV~iDvg~---------------------------~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|+.|++++|++||+|++|+|+ .|+||++|++|||++|+++++++++|++++|
T Consensus 81 H~~p~~~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~~l~~~~~e 159 (286)
T PRK07281 81 HAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKE 159 (286)
T ss_pred CCCCCCcCcCCCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999999997 4899999999999999999999999999864
No 7
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=99.96 E-value=1.9e-28 Score=214.14 Aligned_cols=126 Identities=48% Similarity=0.808 Sum_probs=120.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCC
Q 026748 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDS 188 (234)
Q Consensus 109 ~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~ 188 (234)
.|||++||+.||+|+++++++++++.+.++||+||.||++.+++.+.++|+.+...+|.+||.++++|.|+.++|+.|++
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~H~~~~~ 81 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCISVNEVVIHGIPDK 81 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEeccccEEEecCCCC
Confidence 69999999999999999999999999999999999999999999999999988767777899999999999999999999
Q ss_pred CCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 189 RALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 189 r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
++|++||+|++|+|+.|+||++|++|||++|+++++++++|+++++
T Consensus 82 ~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~ 127 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEE 127 (247)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
No 8
>PRK12896 methionine aminopeptidase; Reviewed
Probab=99.96 E-value=7.1e-28 Score=211.05 Aligned_cols=129 Identities=47% Similarity=0.814 Sum_probs=122.1
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccC
Q 026748 106 SGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGI 185 (234)
Q Consensus 106 ~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~ 185 (234)
+.+.|||++||+.||+|+++++++++++.+.++||+||.||+..+++.+.++|+.+++..|.+||.++|+|.|+..+|+.
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~h~~ 85 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVNEEVAHGI 85 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCCCeeEecC
Confidence 45689999999999999999999999999999999999999999999999999988777778899999999999999999
Q ss_pred CCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 186 PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 186 P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|++++|++||+|.+|+++.++||++|++|||++|+++++++++|+++++
T Consensus 86 p~~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~ 134 (255)
T PRK12896 86 PGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEE 134 (255)
T ss_pred CCCccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988753
No 9
>PRK05716 methionine aminopeptidase; Validated
Probab=99.95 E-value=3.3e-27 Score=206.51 Aligned_cols=128 Identities=52% Similarity=0.882 Sum_probs=120.8
Q ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCC
Q 026748 107 GPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP 186 (234)
Q Consensus 107 ~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P 186 (234)
+..|||++||+.||+|+++++++++++.+.++||+||.||++.+++.+.++|+.+.+.+|.+|+.++++|.|+..+|+.|
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~h~~~ 81 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTSVNEVVCHGIP 81 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEecccceeecCCC
Confidence 35799999999999999999999999999999999999999999999999999877666778998999999999999999
Q ss_pred CCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 187 DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 187 ~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
++++|++||+|.+|+++.++||++|++|||++|+++++++++|+++++
T Consensus 82 ~~~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~ 129 (252)
T PRK05716 82 SDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKE 129 (252)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998753
No 10
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.95 E-value=9.1e-28 Score=222.82 Aligned_cols=127 Identities=28% Similarity=0.368 Sum_probs=120.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCcee
Q 026748 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECIC 182 (234)
Q Consensus 103 ~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~ 182 (234)
.+..+|.|||++||+.||+|+++++.++..+.+.+++|+||.||.+.++..+.+.|+.. .+|+++|++|.|++++
T Consensus 147 ~i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~-----~sf~~iv~~G~n~a~p 221 (384)
T COG0006 147 LVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEG-----PSFDTIVASGENAALP 221 (384)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCc-----cCcCcEEeccccccCc
Confidence 35678999999999999999999999999999999999999999999999999999764 2599999999999999
Q ss_pred ccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 183 Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|+.|+++.+++||+|+||+|+.|+||++|+||||++|+++++++++|++++|
T Consensus 222 H~~~~~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~ 273 (384)
T COG0006 222 HYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLE 273 (384)
T ss_pred CCCCCcccccCCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998864
No 11
>PRK10879 proline aminopeptidase P II; Provisional
Probab=99.94 E-value=1e-26 Score=220.05 Aligned_cols=126 Identities=22% Similarity=0.336 Sum_probs=118.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceec
Q 026748 104 IVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICH 183 (234)
Q Consensus 104 ~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~H 183 (234)
+.++|+|||++||+.||+|++++..+++++.+.++||+||.||++.++..+.++|+.. .+|+++|++|.|++++|
T Consensus 167 l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~-----~~~~~iv~~G~na~~~H 241 (438)
T PRK10879 167 VHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARY-----PSYNTIVGSGENGCILH 241 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCC-----CCCCcEEEEcCcccccc
Confidence 3458999999999999999999999999999999999999999999999999999863 24889999999999999
Q ss_pred cCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEc-CCCCHHHHHHHhhhcC
Q 026748 184 GIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFC-GDVDDEARNLVKGPCR 234 (234)
Q Consensus 184 g~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~V-G~~s~e~~~l~e~~~E 234 (234)
+.|++++|++||+|++|+|+.++||++|++|||+| |+++++++++|+++++
T Consensus 242 ~~~~~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~ 293 (438)
T PRK10879 242 YTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLE 293 (438)
T ss_pred CCCCccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8999999999998864
No 12
>PRK09795 aminopeptidase; Provisional
Probab=99.94 E-value=1.1e-26 Score=214.14 Aligned_cols=126 Identities=17% Similarity=0.289 Sum_probs=116.0
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceec
Q 026748 104 IVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICH 183 (234)
Q Consensus 104 ~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~H 183 (234)
+..+|+|||++||+.||+|++|++++++.+.+.++||+||.||++.++..+.++|+.+. +|+++|++|.|++.||
T Consensus 121 ~~~lR~iKs~~Ei~~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~-----~f~~iv~sG~~~~~ph 195 (361)
T PRK09795 121 PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVASGWRGALPH 195 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcC-----CCCeEEEEeccccccC
Confidence 57889999999999999999999999999999999999999999999999999998763 5899999999999999
Q ss_pred cCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCC--CCHH---HHHHHhhhcC
Q 026748 184 GIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGD--VDDE---ARNLVKGPCR 234 (234)
Q Consensus 184 g~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~--~s~e---~~~l~e~~~E 234 (234)
+.|++++|++||+|++|+|+.|+||++|++|||++|. ++++ ++++|++++|
T Consensus 196 ~~~~~~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~ 251 (361)
T PRK09795 196 GKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQ 251 (361)
T ss_pred CCCCCceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999963 3333 6888888753
No 13
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=99.93 E-value=4.4e-26 Score=212.65 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=113.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCcee
Q 026748 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECIC 182 (234)
Q Consensus 103 ~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~ 182 (234)
.+.++|+|||++||++||+|++|++++++++.+.++||+||.||.+.+...... +.......|.+|.+++.+|.|+..+
T Consensus 151 ~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~-~~~~~g~~~~~~~~iv~sG~~~a~p 229 (391)
T TIGR02993 151 LVNWQRAVKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIR-GVDGFGGDYPAIVPLLPSGADASAP 229 (391)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhh-cccCcCCCcCCcccccccCccccCC
Confidence 467889999999999999999999999999999999999999999988655332 1110000123466778899999999
Q ss_pred ccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 183 Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|+.|++++|++||+|++|+++.|+||++|++|||++|+++++++++|++++|
T Consensus 230 H~~~~~~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~~ 281 (391)
T TIGR02993 230 HLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLE 281 (391)
T ss_pred CCCCCCCcccCCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764
No 14
>PRK15173 peptidase; Provisional
Probab=99.92 E-value=3.3e-25 Score=202.26 Aligned_cols=127 Identities=19% Similarity=0.273 Sum_probs=113.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCce
Q 026748 102 IGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181 (234)
Q Consensus 102 ~~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~ 181 (234)
+.+.++|.|||++||+.||+|+++++++++++.+.++||+||.||++.++..+.+.|... |..| +++.+|.+ ..
T Consensus 87 ~~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~~----~~~~-~~i~~G~~-~~ 160 (323)
T PRK15173 87 SIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETH----FSRF-HLISVGAD-FS 160 (323)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCC----CCCC-cEEEECCC-Cc
Confidence 346789999999999999999999999999999999999999999999988888876543 1223 46677776 56
Q ss_pred eccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 182 CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 182 ~Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
+|+.|+++++++||+|++|+|+.|+||++|++|||++|+++++++++|++++|
T Consensus 161 ~h~~~~~~~l~~Gd~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~e 213 (323)
T PRK15173 161 PKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRT 213 (323)
T ss_pred cCCCCCCCccCCCCEEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998864
No 15
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=99.92 E-value=1.1e-24 Score=189.62 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCeeeecCCCceeccCCCCCCCCCC
Q 026748 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSP-LGYGGFPKSVCTSVNECICHGIPDSRALEDG 194 (234)
Q Consensus 116 Ie~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~-l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~G 194 (234)
|+.||+|+++++++++++.+.++||+||.||++.+++.+.++|+...+ ..|.++.+++++|.|+..+|+.|++++|++|
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G~~~~~~H~~~~~r~l~~G 80 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRG 80 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEeeccccccCCCCCCcccCCC
Confidence 689999999999999999999999999999999999999999875322 2233344678999999999999999999999
Q ss_pred CEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 195 DTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 195 DiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|+|++|+++.++||++|++|||++|+++++++++|++++|
T Consensus 81 D~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~e 120 (228)
T cd01090 81 DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVA 120 (228)
T ss_pred CEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999864
No 16
>PRK14575 putative peptidase; Provisional
Probab=99.92 E-value=7e-25 Score=205.64 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=113.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCcee
Q 026748 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECIC 182 (234)
Q Consensus 103 ~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~ 182 (234)
.+.++|+|||++||+.||+|+++++++++++.+.++||+||.||++.+++.+.+.|.... ..| +++.+|.+ ..+
T Consensus 171 ~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~----~~~-~~v~~G~~-~~~ 244 (406)
T PRK14575 171 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHF----SRF-HLISVGAD-FSP 244 (406)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcC----CcC-ceEEECCC-ccc
Confidence 467899999999999999999999999999999999999999999999988888776531 122 46777876 568
Q ss_pred ccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 183 Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|+.|++++|++||+|++|+|+.++||++|++|||++|+++++++++|+++++
T Consensus 245 h~~~~~~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~~~~~ 296 (406)
T PRK14575 245 KLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRT 296 (406)
T ss_pred CCCCCCCcCCCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998864
No 17
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.92 E-value=2.1e-24 Score=187.25 Aligned_cols=119 Identities=56% Similarity=1.019 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCC
Q 026748 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (234)
Q Consensus 116 Ie~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GD 195 (234)
|+.||+|+++++++++++.+.++||+||.||++.+.+.+.++|+.+.+.+|.+|+..+++|.|+..+|+.|++++|++||
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~l~~Gd 80 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD 80 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCCCCCcccCCCC
Confidence 68999999999999999999999999999999999999999999887777888998999999999999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 196 TINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 196 iV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
+|.+|+++.++||++|++|||++|+++++++++|+++.+
T Consensus 81 ~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~ 119 (238)
T cd01086 81 IVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEE 119 (238)
T ss_pred EEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 18
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=99.92 E-value=3.1e-24 Score=187.13 Aligned_cols=113 Identities=27% Similarity=0.397 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCC
Q 026748 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (234)
Q Consensus 116 Ie~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GD 195 (234)
|+.||+|+++++++++++.+.++||+||.||++.++..+.++|+.+ +|+.++++|.|+..+|+.|++++|++||
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~~------~~~~~v~~g~~~~~~H~~~~~~~l~~Gd 74 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL------AYSYIVAAGSNAAILHYVHNDQPLKDGD 74 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCCc------CCCCeEEECCCccccCCCcCCCcCCCCC
Confidence 6899999999999999999999999999999999999999999883 3788999999999999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEc-CCCCHHHHHHHhhhcC
Q 026748 196 TINIDVTVYLNGYHGDTSATFFC-GDVDDEARNLVKGPCR 234 (234)
Q Consensus 196 iV~iDvg~~~~GY~~D~sRTf~V-G~~s~e~~~l~e~~~E 234 (234)
+|++|+++.++||++|++|||++ |+++++++++|++++|
T Consensus 75 ~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~ 114 (243)
T cd01087 75 LVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114 (243)
T ss_pred EEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999 6999999999998864
No 19
>PRK14576 putative endopeptidase; Provisional
Probab=99.91 E-value=2.7e-24 Score=201.57 Aligned_cols=126 Identities=19% Similarity=0.238 Sum_probs=114.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCcee
Q 026748 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECIC 182 (234)
Q Consensus 103 ~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~ 182 (234)
.+.++|+|||++||+.||+|++++++++.++.+.++||+||.||++.++..+.+.|... +..| ++|++|.| ..+
T Consensus 170 ~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~----~~~~-~~v~~G~~-~~~ 243 (405)
T PRK14576 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETN----FSRF-NLISVGDN-FSP 243 (405)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCc----CCCC-CEEEECCc-ccC
Confidence 46688999999999999999999999999999999999999999999999999887542 1123 67888888 569
Q ss_pred ccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 183 Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|+.|+++++++||+|++|+++.++||++|++|||++|+++++++++|+++.|
T Consensus 244 h~~~~~~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~~~~~~~ 295 (405)
T PRK14576 244 KIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRT 295 (405)
T ss_pred CCCCCCcccCCCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764
No 20
>PRK13607 proline dipeptidase; Provisional
Probab=99.91 E-value=4.8e-24 Score=202.26 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=109.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCcee
Q 026748 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECIC 182 (234)
Q Consensus 103 ~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~ 182 (234)
.+.++|+|||++||+.||+|+++++++++++.+.++||+||.||++.+.... ..++.. .+|++++++|.|++++
T Consensus 154 ~l~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~~~-----~~y~~iva~G~naa~~ 227 (443)
T PRK13607 154 YLHYHRAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRDND-----VPYGNIVALNEHAAVL 227 (443)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCCcC-----CCCCcEEEecCcceEe
Confidence 3567899999999999999999999999999999999999999998654332 222221 3588999999999999
Q ss_pred ccCCCCC-CCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 183 HGIPDSR-ALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 183 Hg~P~~r-~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|+.|+++ ++++||+|++|+|+.++||++|+||||+ |++++++.++|+++++
T Consensus 228 H~~~~~~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~v~~ 279 (443)
T PRK13607 228 HYTKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKDVNK 279 (443)
T ss_pred cCCccCCCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHHHHH
Confidence 9999875 6899999999999999999999999999 8899999999998763
No 21
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=99.90 E-value=2.3e-23 Score=176.07 Aligned_cols=114 Identities=28% Similarity=0.472 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCC
Q 026748 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (234)
Q Consensus 116 Ie~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GD 195 (234)
|++||+|+++++.++.++.+.++||+||.||++.++..+.++|+++ .+|++++++|.|+..+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~-----~~~~~~v~~g~~~~~~h~~~~~~~l~~gd 75 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEG-----PSFDTIVASGPNSALPHGVPSDRKIEEGD 75 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC-----CCCCcEEEECccccccCCCCCCcCcCCCC
Confidence 6899999999999999999999999999999999999999999874 25899999999999999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 196 TINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 196 iV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
+|++|+++.++||++|++|||++|+++++++++++++.+
T Consensus 76 ~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~ 114 (208)
T cd01092 76 LVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLE 114 (208)
T ss_pred EEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 22
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.90 E-value=2.6e-23 Score=194.39 Aligned_cols=126 Identities=21% Similarity=0.357 Sum_probs=108.8
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCC----CCCCCCeeeecCCCceec
Q 026748 108 PEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLG----YGGFPKSVCTSVNECICH 183 (234)
Q Consensus 108 R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~----y~gFp~~v~sg~N~~~~H 183 (234)
-.+|+++||+.||+|++|++++++.+.+.++||+|+.||+..+++++.+.++. .+.+ +.+|+..+|+++|+++||
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~-~~~~~~~~~~g~afpt~vSvN~~v~H 89 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAK-IFKKEKEMEKGIAFPTCISVNNCVGH 89 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh-hhcccccccCCCCCCeEEecCCeeeC
Confidence 36999999999999999999999999999999999999999999999987653 2211 334444467789999999
Q ss_pred cCC--C--CCCCCCCCEEEEEEeeEECCEEeceeeEEEcCC-----CCHHHHHHHhhhcC
Q 026748 184 GIP--D--SRALEDGDTINIDVTVYLNGYHGDTSATFFCGD-----VDDEARNLVKGPCR 234 (234)
Q Consensus 184 g~P--~--~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~-----~s~e~~~l~e~~~E 234 (234)
++| + +++|++||+|+||+|+.++||++|++|||+||+ +++++.++++++++
T Consensus 90 ~~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~ 149 (389)
T TIGR00495 90 FSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHL 149 (389)
T ss_pred CCCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHH
Confidence 999 2 488999999999999999999999999999995 56788899988753
No 23
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=99.89 E-value=8.3e-23 Score=177.76 Aligned_cols=113 Identities=18% Similarity=0.126 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCC---CCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPG--ITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD---SRAL 191 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpG--vTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~---~r~L 191 (234)
+.||.+..+ .++++.+.+.++|| +||.||++.+++++...|.++. .+|+++||+|+|++++|+.|+ +++|
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~----~~f~~~v~~g~n~~~~H~~p~~~~~r~l 79 (224)
T cd01085 5 AHIRDGVAL-VEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVG----LSFDTISGFGPNGAIVHYSPTEESNRKI 79 (224)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcC----CCcceEEEecCccCcCCCCcCcccCccc
Confidence 345666655 59999999999999 9999999999988877765432 258999999999999999998 9999
Q ss_pred CCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 192 EDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 192 ~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
++||+|++|+++.++||++|++|||++|+++++++++|++++|
T Consensus 80 ~~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~ 122 (224)
T cd01085 80 SPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLK 122 (224)
T ss_pred CCCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
No 24
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=99.88 E-value=4.8e-22 Score=168.53 Aligned_cols=111 Identities=32% Similarity=0.518 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQM-IIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~-l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GD 195 (234)
|+||+|+++++++++++.+.++||+||.||.+.+.+. +.++|... .+|+.++++|.|...+|+.|++++|++||
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~l~~gd 75 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEE-----PAFPPIVGSGPNTDLPHYTPTDRRLQEGD 75 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTE-----ESSESEEEECCCCGETTTBCCSSBESTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCc-----ccCCceEecCCcceecceeccceeeecCC
Confidence 6899999999999999999999999999999999998 66777543 35889999999999999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhc
Q 026748 196 TINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPC 233 (234)
Q Consensus 196 iV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~ 233 (234)
+|.+|+++.++||++|++|||++| +++++++++++++
T Consensus 76 ~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~ 112 (207)
T PF00557_consen 76 IVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAR 112 (207)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHH
T ss_pred cceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhH
Confidence 999999999999999999999999 9999999999875
No 25
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=99.87 E-value=1.4e-21 Score=169.75 Aligned_cols=117 Identities=24% Similarity=0.455 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCC--CCC-CCCC--CCCCCeeeecCCCceeccCC----
Q 026748 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA--YPS-PLGY--GGFPKSVCTSVNECICHGIP---- 186 (234)
Q Consensus 116 Ie~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga--~ps-~l~y--~gFp~~v~sg~N~~~~Hg~P---- 186 (234)
+++||+|++|++++++++.+.++||+||.||+..+++++.+... ++. ..++ ..|+++ ++.|+..+|+.|
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~--v~~n~~~~H~~p~~~~ 78 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTC--ISVNNCVCHFSPLKSD 78 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeE--eccCceeecCCCCCCC
Confidence 36899999999999999999999999999999888888877322 221 1222 235544 457999999996
Q ss_pred CCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCH-----HHHHHHhhhcC
Q 026748 187 DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD-----EARNLVKGPCR 234 (234)
Q Consensus 187 ~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~-----e~~~l~e~~~E 234 (234)
++++|++||+|++|+|+.|+||++|++|||++|++++ ++++++++++|
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~e 131 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHY 131 (228)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHH
Confidence 6889999999999999999999999999999999885 88899987753
No 26
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.87 E-value=2.2e-21 Score=184.36 Aligned_cols=120 Identities=23% Similarity=0.286 Sum_probs=104.3
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCeeeecCCCce
Q 026748 106 SGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDN----GAYPSPLGYGGFPKSVCTSVNECI 181 (234)
Q Consensus 106 ~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~----Ga~ps~l~y~gFp~~v~sg~N~~~ 181 (234)
+.+..+|++||+.||+|++|++++++.+.+.++||+|+.||+..++..+.+. |+... .+||+ |+|.|++.
T Consensus 148 ~~~~~~s~~EI~~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~g----~aFPt--~vS~N~~a 221 (470)
T PTZ00053 148 RELEKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKCG----WAFPT--GCSLNHCA 221 (470)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCccc----CCCCc--eeecCccc
Confidence 3345689999999999999999999999999999999999999888876544 55322 46988 45899999
Q ss_pred eccCCC---CCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 182 CHGIPD---SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 182 ~Hg~P~---~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
+|++|. +++|++||+|.||+|+.++||++|++|||++| +++.+++++++|
T Consensus 222 aH~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~e 274 (470)
T PTZ00053 222 AHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKD 274 (470)
T ss_pred cCCCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHH
Confidence 999995 68899999999999999999999999999997 677888888764
No 27
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=99.87 E-value=1.9e-21 Score=161.86 Aligned_cols=112 Identities=30% Similarity=0.538 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCC
Q 026748 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGD 195 (234)
Q Consensus 116 Ie~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GD 195 (234)
|+.||+|+++++++++.+.+.++||+||.||.+.+++.+.++|+.+ .|+.++.+|.|...+|+.|+++++++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~------~~~~~v~~g~~~~~~h~~~~~~~i~~gd 74 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP------AGPTIVGSGARTALPHYRPDDRRLQEGD 74 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcEEEECccccCcCCCCCCCCcCCCC
Confidence 5789999999999999999999999999999999999999999943 3778888888889999999999999999
Q ss_pred EEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhc
Q 026748 196 TINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPC 233 (234)
Q Consensus 196 iV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~ 233 (234)
+|++|+++.++||++|++|||++|+++++++++++.+.
T Consensus 75 ~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~ 112 (207)
T cd01066 75 LVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVR 112 (207)
T ss_pred EEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 28
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.85 E-value=9.8e-21 Score=171.03 Aligned_cols=110 Identities=32% Similarity=0.491 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCC---CC
Q 026748 113 EKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD---SR 189 (234)
Q Consensus 113 ~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~---~r 189 (234)
-+||++||+|++|++++++.+.+.++||+++.||++.+++.+.++|+.+ +||+.+ +.|++.+|+.|. ++
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~~------aFp~~v--s~n~~~~H~~p~~~d~~ 73 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPCNI--SINECAAHFTPKAGDKT 73 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcce--ecCCEeeCCCCCCCcCc
Confidence 4799999999999999999999999999999999999999999999986 488865 579999999985 67
Q ss_pred CCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhc
Q 026748 190 ALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPC 233 (234)
Q Consensus 190 ~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~ 233 (234)
+|++||+|++|+|+.++||++|++|||++|+. .++++++++
T Consensus 74 ~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~~---~~~l~~a~~ 114 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHVDGYIADTAITVDLGDQ---YDNLVKAAK 114 (295)
T ss_pred cCCCCCEEEEEEeEEECCEEEEEEEEEEeCcH---HHHHHHHHH
Confidence 89999999999999999999999999999953 567777765
No 29
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.84 E-value=2.9e-20 Score=167.56 Aligned_cols=109 Identities=31% Similarity=0.519 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCC---CCCC
Q 026748 115 GIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD---SRAL 191 (234)
Q Consensus 115 EIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~---~r~L 191 (234)
+|++||+|++|++++++.+.+.++||+|+.||++.+++.+.+.|+.++ ||+.+ +.|+..+|+.|. +++|
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g~~~a------fp~~v--s~n~~~~H~~p~~~d~~~l 72 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FPCNI--SINEVAAHYTPSPGDERVF 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCccC------CCCEE--eeCCCccCCCCCCCCCccc
Confidence 589999999999999999999999999999999999999999998764 88654 577888999986 6889
Q ss_pred CCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 192 EDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 192 ~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
++||+|++|+|+.++||++|++|||++| ++++++++++++
T Consensus 73 ~~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~ 112 (291)
T PRK08671 73 PEGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEE 112 (291)
T ss_pred CCCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHH
Confidence 9999999999999999999999999999 466778777653
No 30
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.81 E-value=1.7e-19 Score=162.56 Aligned_cols=108 Identities=33% Similarity=0.549 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCC---CCCC
Q 026748 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDS---RALE 192 (234)
Q Consensus 116 Ie~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~---r~L~ 192 (234)
+++||+|+++++++++++.+.++||+||.||++.+++.+.++|+.++ ||. ++|.|+..+|+.|.. ++|+
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~a------fp~--~is~n~~~~H~~p~~~d~~~l~ 72 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPA------FPV--NLSINECAAHYTPNAGDDTVLK 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCCC------CCc--eeccCCEeeCCCCCCCCCcccC
Confidence 36899999999999999999999999999999999999999998753 775 468999999999864 8999
Q ss_pred CCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 193 DGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 193 ~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
+||+|.+|+|+.++||++|++|||++|+ ++.++++++++
T Consensus 73 ~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~ 111 (291)
T cd01088 73 EGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKE 111 (291)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHH
Confidence 9999999999999999999999999985 66777777653
No 31
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.81 E-value=3.7e-20 Score=171.00 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=119.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCcee
Q 026748 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECIC 182 (234)
Q Consensus 103 ~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~ 182 (234)
.+.++|.|||+.|++.||+||.|+.+++-..+-.-|++..|..+++.++..++.+|++- ..||+.|+.|.|+...
T Consensus 221 li~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rGad~-----~AYpPVVAgG~na~tI 295 (488)
T KOG2414|consen 221 LIERLRLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRGADR-----LAYPPVVAGGKNANTI 295 (488)
T ss_pred HHHHHHccCCHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhhHhhhhhhheeecCccc-----cccCCeeecCcccceE
Confidence 35678999999999999999999999999999889999999999999999999999975 3689999999999999
Q ss_pred ccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEc-CCCCHHHHHHHhhhc
Q 026748 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFC-GDVDDEARNLVKGPC 233 (234)
Q Consensus 183 Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~V-G~~s~e~~~l~e~~~ 233 (234)
|+.-++..|.+||.|++|.|+.++||.+|+||||.+ |+.++.|++||+++.
T Consensus 296 HY~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL 347 (488)
T KOG2414|consen 296 HYVRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVL 347 (488)
T ss_pred EEeecccccCCCcEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999875
No 32
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=99.81 E-value=8.1e-20 Score=167.54 Aligned_cols=128 Identities=15% Similarity=0.240 Sum_probs=118.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCce
Q 026748 102 IGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181 (234)
Q Consensus 102 ~~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~ 181 (234)
|.+.+.|.|||+.||+.||.|++|+++++.+++.+++||+.|.++...+......+|.-.. .+|..|+|+|.|..+
T Consensus 177 p~m~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcRh----~sYtcIc~sG~ns~v 252 (492)
T KOG2737|consen 177 PILAECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCRH----LSYTCICASGDNSAV 252 (492)
T ss_pred HHHhhheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCccc----cccceeeecCCCcce
Confidence 3566889999999999999999999999999999999999999999999988888876332 368889999999999
Q ss_pred ecc----CCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEc-CCCCHHHHHHHhhhc
Q 026748 182 CHG----IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFC-GDVDDEARNLVKGPC 233 (234)
Q Consensus 182 ~Hg----~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~V-G~~s~e~~~l~e~~~ 233 (234)
.|+ .|+++.+|+||..++|+|+.|.+|.+|+|++|.+ |+.+++|+.+|+++.
T Consensus 253 LHYgha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVL 309 (492)
T KOG2737|consen 253 LHYGHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVL 309 (492)
T ss_pred eeccccCCCCCcccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHH
Confidence 998 8999999999999999999999999999999999 999999999999764
No 33
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=99.76 E-value=2.7e-18 Score=151.27 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----hcCCC--CCHHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCeeeecCCC-cee
Q 026748 116 IECMRVSGRLAAQVLEYAGT-----LVKPG--ITTDEIDKAVHQMIIDNGAY-----PSPLGYGGFPKSVCTSVNE-CIC 182 (234)
Q Consensus 116 Ie~mR~Aa~ia~~al~~~~~-----~ikpG--vTe~EI~~~v~~~l~~~Ga~-----ps~l~y~gFp~~v~sg~N~-~~~ 182 (234)
++.||+|++++..+|..... .|.+| +|+.+|+..++..+.+.+.. |..+. .+|+++|++|.|. ..+
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~~-~~y~~iv~sG~~~~~l~ 79 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQLD-WCYPPIIQSGGNYDLLK 79 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHcC-cccCCeEeECcCcccCC
Confidence 46899999999999975555 89999 99999999999999988744 22222 3699999999999 899
Q ss_pred ccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhcC
Q 026748 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 183 Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~E 234 (234)
|+.++++.++.||+|++|+|+.|+|||+|++|||++| ++++++++|+++++
T Consensus 80 h~~~s~~~~~~~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~ 130 (243)
T cd01091 80 SSSSSDKLLYHFGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLA 130 (243)
T ss_pred CCCCCccccCCCCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 79999999998764
No 34
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.27 E-value=1.9e-11 Score=111.93 Aligned_cols=112 Identities=25% Similarity=0.462 Sum_probs=93.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCC--CCCC-CCCC--CCCCCeeeecCCCceec
Q 026748 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG--AYPS-PLGY--GGFPKSVCTSVNECICH 183 (234)
Q Consensus 109 ~VKs~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~G--a~ps-~l~y--~gFp~~v~sg~N~~~~H 183 (234)
.|-++.-+.+.|-|++|+..+|..+.+.+.||.+..||+.....++.+.- .|.. -..+ -.||+ |+++|+++||
T Consensus 14 tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT--~Isvnncv~h 91 (398)
T KOG2776|consen 14 TIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPT--SISVNNCVCH 91 (398)
T ss_pred ccccHHHHhhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccc--eecccceeec
Confidence 56678889999999999999999999999999999999999888877642 1221 0111 24776 5679999999
Q ss_pred cCCC----CCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCC
Q 026748 184 GIPD----SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD 222 (234)
Q Consensus 184 g~P~----~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s 222 (234)
+.|- +..|++||+|.||+|+++|||.+-.+.|++|+.++
T Consensus 92 ~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~ 134 (398)
T KOG2776|consen 92 FSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAP 134 (398)
T ss_pred cCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCC
Confidence 9883 67899999999999999999999999999998655
No 35
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.21 E-value=3.9e-11 Score=115.86 Aligned_cols=128 Identities=14% Similarity=0.108 Sum_probs=105.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhh----cCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeee
Q 026748 102 IGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTL----VKPG--ITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175 (234)
Q Consensus 102 ~~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~----ikpG--vTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~s 175 (234)
+++..++++|+++|++.||.|----..|+.+...+ +..| +||.+++..++++-..+..+-. .+|++|.++
T Consensus 299 Spi~~~kAiKN~~E~~gmr~shirD~~Alve~~~wle~~~~~g~~itE~~~A~kle~fR~~~~~fmg----lSFeTIS~s 374 (606)
T KOG2413|consen 299 SPISRAKAIKNDDELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFRSRQDHFMG----LSFETISSS 374 (606)
T ss_pred CHHHHHHHhcChHHhhhhhhcchhhHHHHHHHHHHHhhhhhcCcccchhhHHHHHHHHHHhhccccC----cCcceeecc
Confidence 34556789999999999998876666666655554 4456 8999999999988777655422 369999866
Q ss_pred -cCCCceeccCCC---CCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhhc
Q 026748 176 -SVNECICHGIPD---SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGPC 233 (234)
Q Consensus 176 -g~N~~~~Hg~P~---~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~~ 233 (234)
|+|++++|+.|. ++.+-+..+.++|.|+.|.--.+|+|||+..|+|++++++.|..+.
T Consensus 375 ~G~NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VL 436 (606)
T KOG2413|consen 375 VGPNGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVL 436 (606)
T ss_pred CCCCceeeecCCCccccceecCceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHH
Confidence 999999999985 5689999999999999998888999999999999999999987764
No 36
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=98.89 E-value=6.2e-09 Score=102.81 Aligned_cols=134 Identities=17% Similarity=0.223 Sum_probs=101.9
Q ss_pred CCccCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHH-----HhhhcCCC--CCHHHHHHHHHHHHHHC----CCCCC
Q 026748 94 PYVNSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEY-----AGTLVKPG--ITTDEIDKAVHQMIIDN----GAYPS 162 (234)
Q Consensus 94 ~y~~~~~~~~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~-----~~~~ikpG--vTe~EI~~~v~~~l~~~----Ga~ps 162 (234)
.|...++..-+..+.+||++.||+.||+|++++...|.. ...+|..| +|..-+...++..+.+. |..|.
T Consensus 121 ~fn~vDis~~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~~ 200 (960)
T KOG1189|consen 121 GFNKVDISLGLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDPD 200 (960)
T ss_pred CCceeehhhhhhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhccccCcccCcc
Confidence 333344433467889999999999999999999999883 33445555 67778888888777664 33443
Q ss_pred CCCCCCCCCeeeecCCC-ceeccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhh
Q 026748 163 PLGYGGFPKSVCTSVNE-CICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGP 232 (234)
Q Consensus 163 ~l~y~gFp~~v~sg~N~-~~~Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~ 232 (234)
.+. ++||+++.+|.+- ..+....++..| | +|+..+|++|++||+.++|||+| .|+.++.+.|+..
T Consensus 201 ~~d-~cY~PIiqSGg~ydlk~sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT~Li-dpssemq~nY~fL 266 (960)
T KOG1189|consen 201 LLD-MCYPPIIQSGGKYDLKPSAVSDDNHL--H-VILCSLGIRYNSYCSNVSRTYLI-DPSSEMQENYEFL 266 (960)
T ss_pred ccc-cccChhhhcCCccccccccccccccc--c-eEEeeccchhhhhhccccceeee-cchHHHHHHHHHH
Confidence 233 5799999998874 445556678888 4 99999999999999999999999 7899998887754
No 37
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=98.77 E-value=3.9e-08 Score=88.87 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH----HCCCCCCCCCCCCCCCeeeecCCCceeccCC
Q 026748 111 HDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII----DNGAYPSPLGYGGFPKSVCTSVNECICHGIP 186 (234)
Q Consensus 111 Ks~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~----~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P 186 (234)
-..+...-+|+|+++.+++-.++...|+||||.-||+..++...+ +.|... . .+||+- .|-|.+..|+.|
T Consensus 80 ~~~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~a-G---i~FPtG--~SlN~cAAHyTp 153 (397)
T KOG2775|consen 80 TESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNA-G---IGFPTG--CSLNHCAAHYTP 153 (397)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhccccc-c---ccCCCc--ccccchhhhcCC
Confidence 345667889999999999999999999999999999999887544 444432 2 368875 478999999998
Q ss_pred C---CCCCCCCCEEEEEEeeEECCEEeceeeEEEcC
Q 026748 187 D---SRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219 (234)
Q Consensus 187 ~---~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG 219 (234)
+ ..+|+.+|+..||+|...+|-.-|++.|+.+.
T Consensus 154 NaGd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F~ 189 (397)
T KOG2775|consen 154 NAGDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAFN 189 (397)
T ss_pred CCCCceeeeecceEEEeccccccCeEeeeeeEEeeC
Confidence 5 46899999999999999999999999999984
No 38
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=98.17 E-value=4.5e-06 Score=81.77 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=86.2
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhh----cCCC--CCHHHHHHHHHHHHHHC------CCCCC-----
Q 026748 100 KPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTL----VKPG--ITTDEIDKAVHQMIIDN------GAYPS----- 162 (234)
Q Consensus 100 ~~~~~~~~R~VKs~eEIe~mR~Aa~ia~~al~~~~~~----ikpG--vTe~EI~~~v~~~l~~~------Ga~ps----- 162 (234)
+..-+..+-.+|+.+||+.+|.+.+.....|+...+. +..+ +|...+...++..+-+- ...-+
T Consensus 160 vslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~~~d 239 (1001)
T COG5406 160 VSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDIDLD 239 (1001)
T ss_pred hhhhhhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcCccccccchh
Confidence 3334567889999999999999999999888844332 2222 34445554444322111 11111
Q ss_pred CCCCCCCCCeeeecCC-CceeccCCCCCCCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhh
Q 026748 163 PLGYGGFPKSVCTSVN-ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGP 232 (234)
Q Consensus 163 ~l~y~gFp~~v~sg~N-~~~~Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~ 232 (234)
.+. .+|.+++.+|.. ...+..+..++.|- ||+|.+.+|.+|+|||+.++|||+. +|+.++.+-|+-+
T Consensus 240 ~le-w~ytpiiqsg~~~Dl~psa~s~~~~l~-gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl 307 (1001)
T COG5406 240 QLE-WCYTPIIQSGGSIDLTPSAFSFPMELT-GDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFL 307 (1001)
T ss_pred hhh-hhcchhhccCceeecccccccCchhhc-CceEEEEeeeeeccccccccceEEe-CCchHhhhhHHHH
Confidence 122 357888888764 33333444455553 8999999999999999999999999 6888887776643
No 39
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=97.90 E-value=0.00024 Score=58.71 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCCE
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDT 196 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GDi 196 (234)
+.++++.+.+.++++.+.+.++||++..||...+++.+.++|......+ .+.+.+.....+.-.-....+.+|++|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~~--~~Gh~iG~~~~e~~~~~~~~~~~l~~gmv 179 (207)
T cd01066 102 DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGH--RTGHGIGLEIHEPPVLKAGDDTVLEPGMV 179 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCCC--CCccccCcccCCCCCcCCCCCCCcCCCCE
Confidence 6788999999999999999999999999999999999999987421111 11111211111111001124679999999
Q ss_pred EEEEEeeEEC-CEEeceeeEEEcCC
Q 026748 197 INIDVTVYLN-GYHGDTSATFFCGD 220 (234)
Q Consensus 197 V~iDvg~~~~-GY~~D~sRTf~VG~ 220 (234)
+.++.+.+.. ++..-+..|++|.+
T Consensus 180 ~~iep~~~~~~~~g~~~ed~v~vt~ 204 (207)
T cd01066 180 FAVEPGLYLPGGGGVRIEDTVLVTE 204 (207)
T ss_pred EEECCEEEECCCcEEEeeeEEEEeC
Confidence 9999999987 58888999999854
No 40
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=97.71 E-value=0.00046 Score=58.02 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccC----C-CCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGI----P-DSRAL 191 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~----P-~~r~L 191 (234)
+.+|++.+.+.++++.+.+.++||++..||.+.+++.+.++|..+. |+..++-|.. ...|-. + ++.+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~------~~~~~Gh~iG-~~~~e~p~i~~~~~~~l 175 (208)
T cd01092 103 DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEY------FIHRTGHGVG-LEVHEAPYISPGSDDVL 175 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCcccc------CCCCCccccC-cccCcCCCcCCCCCCCc
Confidence 4677899999999999999999999999999999999999987432 2221111111 111221 2 46789
Q ss_pred CCCCEEEEEEeeEECCE-EeceeeEEEcC
Q 026748 192 EDGDTINIDVTVYLNGY-HGDTSATFFCG 219 (234)
Q Consensus 192 ~~GDiV~iDvg~~~~GY-~~D~sRTf~VG 219 (234)
++|.++.|+.+.+..|+ -.-+..|++|.
T Consensus 176 ~~gmv~~iep~~~~~~~~g~~~ed~v~vt 204 (208)
T cd01092 176 EEGMVFTIEPGIYIPGKGGVRIEDDVLVT 204 (208)
T ss_pred CCCCEEEECCeEEecCCCEEEeeeEEEEC
Confidence 99999999999887654 34467888874
No 41
>PRK05716 methionine aminopeptidase; Validated
Probab=97.54 E-value=0.0011 Score=57.86 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCC--ceecc-CC-CCCCCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE--CICHG-IP-DSRALED 193 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~--~~~Hg-~P-~~r~L~~ 193 (234)
..|++.+++.++++++.+.++||++-.||++++++.+.++|..+. .++.|+ .+....++ .+.++ .+ ++.+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~~~-~~~~GH--giG~~~~e~p~~~~~~~~~~~~~le~ 195 (252)
T PRK05716 119 EDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVV-REYCGH--GIGRKFHEEPQIPHYGAPGDGPVLKE 195 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCcccc--ccCCccCCCCccCcCCCCCCCCEecC
Confidence 467788888999999999999999999999999999999987642 222222 22222111 11111 12 3678999
Q ss_pred CCEEEEEEeeEE------------------CCEEeceeeEEEcCC
Q 026748 194 GDTINIDVTVYL------------------NGYHGDTSATFFCGD 220 (234)
Q Consensus 194 GDiV~iDvg~~~------------------~GY~~D~sRTf~VG~ 220 (234)
|.++.++.+.+. .++-.-+..|++|.+
T Consensus 196 Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~ 240 (252)
T PRK05716 196 GMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTE 240 (252)
T ss_pred CCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcC
Confidence 999999988875 235556778888864
No 42
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=97.47 E-value=0.0021 Score=55.63 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCc--ee-ccCC-CCCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC--IC-HGIP-DSRALE 192 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~--~~-Hg~P-~~r~L~ 192 (234)
+.+|++.+.+.++.+.+.+.++||++-.|+++++++.+.+.|... ..++.++ .+.....+. +. +..+ ++.+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~-~~~~~GH--giG~~~~e~p~~~~~~~~~~~~~le 184 (238)
T cd01086 108 EEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSV-VREFGGH--GIGRKFHEEPQIPNYGRPGTGPKLK 184 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcce-ecCcccc--CCCCccccCCCcCCccCCCCCCEec
Confidence 346788888899999999999999999999999999999998754 2222222 121111111 11 2223 367899
Q ss_pred CCCEEEEEEeeEE------------------CCEEeceeeEEEcCC
Q 026748 193 DGDTINIDVTVYL------------------NGYHGDTSATFFCGD 220 (234)
Q Consensus 193 ~GDiV~iDvg~~~------------------~GY~~D~sRTf~VG~ 220 (234)
+|.++.++.+.++ +.+-.-+..|++|.+
T Consensus 185 ~Gmv~~iep~i~~~~~~~~~~~~~~~~~~~~g~~g~~~edtv~Vte 230 (238)
T cd01086 185 PGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITE 230 (238)
T ss_pred CCCEEEEeeEEECCCCceEECCCCCEEEcCCCCEEEeeeeEEEEcC
Confidence 9999999998875 123445667888854
No 43
>PRK15173 peptidase; Provisional
Probab=97.46 E-value=0.0016 Score=59.75 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeee--ecCCCceeccC-CCCCCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVC--TSVNECICHGI-PDSRALED 193 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~--sg~N~~~~Hg~-P~~r~L~~ 193 (234)
+..|++-+++.++++.+.+.++||++-.||+..+.+.+.+.|......++.| +.+. .|.++. |... .++.+|++
T Consensus 202 ~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G~~~~~~~~~G--HGiG~~lg~~E~-P~i~~~~~~~Le~ 278 (323)
T PRK15173 202 EITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLG--HGNGVFLGLEES-PFVSTHATESFTS 278 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCC--CcCCCCCCcCCC-CCCCCCCCCccCC
Confidence 3567888899999999999999999999999999999999886432222111 2222 133321 1111 24578999
Q ss_pred CCEEEEEEeeEECCE-EeceeeEEEcCC
Q 026748 194 GDTINIDVTVYLNGY-HGDTSATFFCGD 220 (234)
Q Consensus 194 GDiV~iDvg~~~~GY-~~D~sRTf~VG~ 220 (234)
|.++.++.+.+..|. -.-+..|++|.+
T Consensus 279 GMV~tiEPgiy~~g~ggvriEDtvlVTe 306 (323)
T PRK15173 279 GMVLSLETPYYGYNLGSIMIEDMILINK 306 (323)
T ss_pred CCEEEECCEEEcCCCcEEEEeeEEEEcC
Confidence 999999999885443 356789999853
No 44
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=97.45 E-value=0.0021 Score=56.08 Aligned_cols=100 Identities=19% Similarity=0.114 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCc--eeccC--CCCCCCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC--ICHGI--PDSRALED 193 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~--~~Hg~--P~~r~L~~ 193 (234)
.++++.+++.++++.+.+.++||++-.||+.++.+.+.+.|..+. .+|.| +.+....++. ++... .++.+|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~-~~~~G--HgiG~~~~e~p~i~~~~~~~~~~~l~~ 193 (247)
T TIGR00500 117 EAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV-REYCG--HGIGRKFHEEPQIPNYGKKFTNVRLKE 193 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCccC--CccCcccCCCCccCCcCcCCCCCEecC
Confidence 467778888899999999999999999999999999999987542 22222 2222222221 12111 13678999
Q ss_pred CCEEEEEEeeEEC------------------CEEeceeeEEEcCC
Q 026748 194 GDTINIDVTVYLN------------------GYHGDTSATFFCGD 220 (234)
Q Consensus 194 GDiV~iDvg~~~~------------------GY~~D~sRTf~VG~ 220 (234)
|.++.++.+.+.. ++-.-+..|++|.+
T Consensus 194 gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~ 238 (247)
T TIGR00500 194 GMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITD 238 (247)
T ss_pred CCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcC
Confidence 9999999988762 34555777888854
No 45
>PRK14575 putative peptidase; Provisional
Probab=97.39 E-value=0.002 Score=60.86 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeee--ecCCCceeccC-CCCCCCCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVC--TSVNECICHGI-PDSRALEDG 194 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~--sg~N~~~~Hg~-P~~r~L~~G 194 (234)
..|++.+++.++++.+.+.++||++-.||++.+.+.+.+.|......++ +.+.+. .|.++. +... -++.+|++|
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHGiG~~lg~~e~-P~i~~~~~~~Le~G 362 (406)
T PRK14575 286 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGH--LGHGNGVFLGLEES-PFVSTHATESFTSG 362 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCcccCCCCCccC-CCCCCCCCCCcCCC
Confidence 4567888889999999999999999999999999999998864322221 222222 133221 1111 245789999
Q ss_pred CEEEEEEeeEECCE-EeceeeEEEcCC
Q 026748 195 DTINIDVTVYLNGY-HGDTSATFFCGD 220 (234)
Q Consensus 195 DiV~iDvg~~~~GY-~~D~sRTf~VG~ 220 (234)
.++.+..+.+..|. -.-+..|++|.+
T Consensus 363 Mv~tiEpgiy~~g~gGvriEDtvlVT~ 389 (406)
T PRK14575 363 MVLSLETPYYGYNLGSIMIEDMILINK 389 (406)
T ss_pred CEEEECCeeecCCCcEEEEEeEEEEcC
Confidence 99999999886553 356889999954
No 46
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=97.37 E-value=0.0025 Score=55.50 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceecc----C--CCCCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG----I--PDSRAL 191 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg----~--P~~r~L 191 (234)
..|++.+++.++++.+.+.++||++-.||++++.+.+.++|...... .++.+.+....++. +|+ + .++.+|
T Consensus 110 ~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~--~~~GHgiGl~~he~-~~~~g~~~~~~~~~~L 186 (228)
T cd01090 110 AHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRT--FGYGHSFGVLSHYY-GREAGLELREDIDTVL 186 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccc--cccCcccccccccC-CCccccccCCCCCCcc
Confidence 46788889999999999999999999999999999999998654211 11222232222222 221 1 135889
Q ss_pred CCCCEEEEEEeeEEC----CE-EeceeeEEEcCC
Q 026748 192 EDGDTINIDVTVYLN----GY-HGDTSATFFCGD 220 (234)
Q Consensus 192 ~~GDiV~iDvg~~~~----GY-~~D~sRTf~VG~ 220 (234)
++|.++.++.+.++. |. ---+..|++|.+
T Consensus 187 e~GMV~~iEP~i~~~~~~~g~gG~ried~v~Vt~ 220 (228)
T cd01090 187 EPGMVVSMEPMIMLPEGQPGAGGYREHDILVINE 220 (228)
T ss_pred CCCCEEEECCEEeecccCCCCcEEEeeeEEEECC
Confidence 999999999998863 32 223788888864
No 47
>PRK09795 aminopeptidase; Provisional
Probab=97.36 E-value=0.0026 Score=58.84 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCC-----C
Q 026748 113 EKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP-----D 187 (234)
Q Consensus 113 ~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P-----~ 187 (234)
+++-+.++++-+++.++.+++.+.++||++-.||++.+.+.+.++|.... |.+.+.-|+. ...|-.| +
T Consensus 236 ~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~g~~~~------~~h~~GHgiG-l~~he~p~i~~~~ 308 (361)
T PRK09795 236 SAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDY------FGHNTGHAIG-IEVHEDPRFSPRD 308 (361)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcc------CCCCCCccCC-ccccCCCCcCCCC
Confidence 55556788999999999999999999999999999999999999886442 2222211211 1123222 3
Q ss_pred CCCCCCCCEEEEEEeeEECCE-EeceeeEEEcCC
Q 026748 188 SRALEDGDTINIDVTVYLNGY-HGDTSATFFCGD 220 (234)
Q Consensus 188 ~r~L~~GDiV~iDvg~~~~GY-~~D~sRTf~VG~ 220 (234)
+.+|++|.++.|+.+.+..|+ -.-+.-|++|.+
T Consensus 309 ~~~l~~gmv~~iEpgiy~~~~~gvriEd~v~vt~ 342 (361)
T PRK09795 309 TTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTP 342 (361)
T ss_pred CCCcCCCCEEEECCEEEeCCCCEEEEeeEEEECC
Confidence 688999999999999988664 345678888853
No 48
>PRK08671 methionine aminopeptidase; Provisional
Probab=97.33 E-value=0.0029 Score=57.18 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccC--------CCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGI--------PDSR 189 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~--------P~~r 189 (234)
..++..+.+.++++.+.+.++||++..||++.+++.+.+.|..+. .+..|+ . +|.+ ..|.. .++.
T Consensus 102 ~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~-~~~~GH--g--iG~~--~~he~p~ip~~~~~~~~ 174 (291)
T PRK08671 102 KYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPI-RNLTGH--G--LERY--ELHAGPSIPNYDEGGGV 174 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-CCCccc--C--cCCC--cccCCCccCccCCCCCc
Confidence 456788888899999999999999999999999999999987653 222121 1 1211 22321 2367
Q ss_pred CCCCCCEEEEEEeeE-ECCEEeceeeEEEcC
Q 026748 190 ALEDGDTINIDVTVY-LNGYHGDTSATFFCG 219 (234)
Q Consensus 190 ~L~~GDiV~iDvg~~-~~GY~~D~sRTf~VG 219 (234)
+|++|+++.|+..+. -.|+..|-.+|-+..
T Consensus 175 ~le~GmV~aIEp~~t~G~G~v~~~~~~~iy~ 205 (291)
T PRK08671 175 KLEEGDVYAIEPFATDGEGKVVEGPEVEIYS 205 (291)
T ss_pred eeCCCCEEEEcceEECCCCeEecCCceEEEe
Confidence 899999999998776 367887877777654
No 49
>PRK14576 putative endopeptidase; Provisional
Probab=97.30 E-value=0.0032 Score=59.43 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeee--ecCCCceeccCC-CCCCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVC--TSVNECICHGIP-DSRALED 193 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~--sg~N~~~~Hg~P-~~r~L~~ 193 (234)
+..+++-+++.++++++.+++|||++-.||+.++.+.+.+.|......++ +.+.+. .|.++. +.-.+ ++.+|++
T Consensus 284 ~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHgiG~~l~~~e~-P~i~~~~~~~Le~ 360 (405)
T PRK14576 284 KLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGH--LGHGDGVFLGLEEV-PFVSTQATETFCP 360 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCCCCCCCCcCcC-CCcCCCCCCccCC
Confidence 35677888889999999999999999999999999999999864322221 122222 233321 22122 3678999
Q ss_pred CCEEEEEEeeEECC-EEeceeeEEEcCC
Q 026748 194 GDTINIDVTVYLNG-YHGDTSATFFCGD 220 (234)
Q Consensus 194 GDiV~iDvg~~~~G-Y~~D~sRTf~VG~ 220 (234)
|.++.++.+.+..| .-.-+..|++|.+
T Consensus 361 GMv~~vEp~~y~~g~ggvriEDtvlVTe 388 (405)
T PRK14576 361 GMVLSLETPYYGIGVGSIMLEDMILITD 388 (405)
T ss_pred CCEEEECCceeecCCCEEEEeeEEEECC
Confidence 99999998777654 2344788999853
No 50
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=97.28 E-value=0.0027 Score=59.59 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCc----eeccCC-CCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC----ICHGIP-DSRAL 191 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~----~~Hg~P-~~r~L 191 (234)
+.++++.+++.++.+++.+.++||++-.||++++.+.+.+.|... .+..|++ +..+.... .+.-.| ++.+|
T Consensus 270 ~~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G~~~--~h~~Ghg--iGl~~~~~~~e~~~~l~~~~~~~L 345 (391)
T TIGR02993 270 QAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLKKYGIHK--DSRTGYP--IGLSYPPDWGERTMSLRPGDNTVL 345 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCcc--CCCceee--eccCcCCCCCCccccccCCCCcee
Confidence 346778889999999999999999999999999999999988653 1122221 21111100 001112 35789
Q ss_pred CCCCEEEEEEeeEECCEEeceeeEEEcCC
Q 026748 192 EDGDTINIDVTVYLNGYHGDTSATFFCGD 220 (234)
Q Consensus 192 ~~GDiV~iDvg~~~~GY~~D~sRTf~VG~ 220 (234)
++|.++.+..+.+..|+-.-+.-|++|.+
T Consensus 346 ~~GMv~tvEpgiy~~~~Gvried~v~VT~ 374 (391)
T TIGR02993 346 KPGMTFHFMTGLWMEDWGLEITESILITE 374 (391)
T ss_pred cCCCEEEEcceeEeCCCCeEEeeEEEECC
Confidence 99999999999998877667888999953
No 51
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=97.28 E-value=0.0025 Score=57.64 Aligned_cols=95 Identities=22% Similarity=0.193 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccC--------CCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGI--------PDSR 189 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~--------P~~r 189 (234)
..++..+++.++++.+.+.++||++..||++.+++.+.+.|..+. .++.|+ . +|. ...|+. .++.
T Consensus 101 ~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~G~~~~-~~~~GH--g--ig~--~~~h~~~~ip~~~~~~~~ 173 (291)
T cd01088 101 KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPI-RNLTGH--S--IER--YRLHAGKSIPNVKGGEGT 173 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCEEe-ecCCcc--C--ccC--ccccCCCccCccCCCCCC
Confidence 456778889999999999999999999999999999999998652 222222 1 121 112221 2357
Q ss_pred CCCCCCEEEEEEeeEE-CCEEeceeeEEEcC
Q 026748 190 ALEDGDTINIDVTVYL-NGYHGDTSATFFCG 219 (234)
Q Consensus 190 ~L~~GDiV~iDvg~~~-~GY~~D~sRTf~VG 219 (234)
+|++|+++.|+..+.. .|+..|-.+|-+..
T Consensus 174 ~le~gmV~aIEp~~s~G~G~v~~~~~~~iy~ 204 (291)
T cd01088 174 RLEEGDVYAIEPFATTGKGYVHDGPECSIYM 204 (291)
T ss_pred EeCCCCEEEEceeEECCCCeeecCCceEEEE
Confidence 8999999999997763 67777766666554
No 52
>PRK12897 methionine aminopeptidase; Reviewed
Probab=97.25 E-value=0.0028 Score=55.68 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCC--ceeccC-C-CCCCCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE--CICHGI-P-DSRALED 193 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~--~~~Hg~-P-~~r~L~~ 193 (234)
..|++.+++.++++.+.+.++||++..|++.++.+.+.+.|.... .++.| +.+....++ .+.+.. + +..+|++
T Consensus 118 ~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~~-~~~~G--HgiGl~~hE~P~i~~~~~~~~~~~l~~ 194 (248)
T PRK12897 118 EAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVA-RDFTG--HGIGKEIHEEPAIFHFGKQGQGPELQE 194 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCccC-CCeEE--CccCCcccCCCccCCCCCCCCCCCcCC
Confidence 466777888999999999999999999999999999999886432 22222 122222222 112211 2 2468999
Q ss_pred CCEEEEEEeeEE-----------------CC-EEeceeeEEEcCC
Q 026748 194 GDTINIDVTVYL-----------------NG-YHGDTSATFFCGD 220 (234)
Q Consensus 194 GDiV~iDvg~~~-----------------~G-Y~~D~sRTf~VG~ 220 (234)
|.++.+..+.+. +| +-.-++.|++|.+
T Consensus 195 Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~ 239 (248)
T PRK12897 195 GMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITK 239 (248)
T ss_pred CCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeC
Confidence 999999988872 44 5667888888854
No 53
>PRK12318 methionine aminopeptidase; Provisional
Probab=97.19 E-value=0.0044 Score=56.13 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCc--eeccCC-CCCCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC--ICHGIP-DSRALED 193 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~--~~Hg~P-~~r~L~~ 193 (234)
+.+|+..+++.++++.+.+.++||++..||+.++.+.+.+.|.... .++.|+ .+....++. +.+..+ ++.+|++
T Consensus 158 ~~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~~~~-~~~~GH--gIGl~~hE~P~i~~~~~~~~~~L~~ 234 (291)
T PRK12318 158 EIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVV-DQFVGH--GVGIKFHENPYVPHHRNSSKIPLAP 234 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccC-CCcccC--CcCccccCCCcccCcCCCCCCEeCC
Confidence 3467788899999999999999999999999999999999886532 122222 222222221 112112 2467999
Q ss_pred CCEEEEEEeeEECC
Q 026748 194 GDTINIDVTVYLNG 207 (234)
Q Consensus 194 GDiV~iDvg~~~~G 207 (234)
|.++.|+.+.+..+
T Consensus 235 GMV~~iEP~i~~~~ 248 (291)
T PRK12318 235 GMIFTIEPMINVGK 248 (291)
T ss_pred CCEEEECCEEEcCC
Confidence 99999998887654
No 54
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=97.18 E-value=0.0034 Score=52.87 Aligned_cols=97 Identities=25% Similarity=0.355 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCeeeecCCCceeccCC---CCCCCCCC
Q 026748 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFPKSVCTSVNECICHGIP---DSRALEDG 194 (234)
Q Consensus 119 mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~-ps~l~y~gFp~~v~sg~N~~~~Hg~P---~~r~L~~G 194 (234)
.+++.+.+.++++.+.+.++||+|..||.+.+.+.+.++|.. +.+. .+.+.+.....+..|. ++ ++.+|++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~~---~~GH~iG~~~~~~~P~-i~~~~~~~~l~~g 179 (207)
T PF00557_consen 104 QRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYPH---GLGHGIGLEFHEPGPN-IARPGDDTVLEPG 179 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBTS---SSEEEESSSSSEEEEE-ESSTTTSSB--TT
T ss_pred ccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceeee---ccccccccccccccee-eecccccceecCC
Confidence 788888888999999999999999999999999999999862 2111 1222222111111122 22 57899999
Q ss_pred CEEEEEEeeE-ECCE-EeceeeEEEcC
Q 026748 195 DTINIDVTVY-LNGY-HGDTSATFFCG 219 (234)
Q Consensus 195 DiV~iDvg~~-~~GY-~~D~sRTf~VG 219 (234)
.++.++.+.. ..|. -.-+.-|++|.
T Consensus 180 mv~~iep~~~~~~~~~g~~~ed~v~Vt 206 (207)
T PF00557_consen 180 MVFAIEPGLYFIPGWGGVRFEDTVLVT 206 (207)
T ss_dssp BEEEEEEEEEEETTSEEEEEBEEEEEE
T ss_pred CceeEeeeEEccCCCcEEEEEEEEEEC
Confidence 9999999887 5554 56667777663
No 55
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=97.11 E-value=0.0047 Score=54.52 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCee----eecCCCceeccCC-CCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSV----CTSVNECICHGIP-DSRAL 191 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v----~sg~N~~~~Hg~P-~~r~L 191 (234)
+..|++.+++.++.+++.+.++||++-.||+..+.+.+.+.|..-. ..|++.+ ....++.-..-.| ++++|
T Consensus 119 ~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~----~~~~~~~GHgiGle~hE~~~~l~~~~~~~L 194 (243)
T cd01091 119 SEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELE----PNFTKNLGFGIGLEFRESSLIINAKNDRKL 194 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHH----HhCcCCcccccCcccccCccccCCCCCCCc
Confidence 4577788999999999999999999999999999999988752111 0133222 2222221111112 36789
Q ss_pred CCCCEEEEEEeeE-EC----------CEEeceeeEEEcCC
Q 026748 192 EDGDTINIDVTVY-LN----------GYHGDTSATFFCGD 220 (234)
Q Consensus 192 ~~GDiV~iDvg~~-~~----------GY~~D~sRTf~VG~ 220 (234)
++|.++.+..|.+ +. .|-.-++.|++|.+
T Consensus 195 ~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 195 KKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTE 234 (243)
T ss_pred CCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcC
Confidence 9999999999997 32 47777899999964
No 56
>PRK12896 methionine aminopeptidase; Reviewed
Probab=97.07 E-value=0.0071 Score=52.84 Aligned_cols=100 Identities=22% Similarity=0.214 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCC---ceecc-CC-CCCCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE---CICHG-IP-DSRALE 192 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~---~~~Hg-~P-~~r~L~ 192 (234)
..+++.+.+.++++.+.+.++||++-.||.+.+.+.+.+.|.... .++.|+ .+.....+ .+.+. .| ++.+|+
T Consensus 124 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~~~~-~~~~GH--giG~~~he~p~~~~~~~~~~~~~~le 200 (255)
T PRK12896 124 EAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVV-RDLTGH--GVGRSLHEEPSVILTYTDPLPNRLLR 200 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCcccC--CcCcccccCCCccccCCCCCCCCEec
Confidence 356777888889999999999999999999999999999886431 222222 12111111 11111 13 367899
Q ss_pred CCCEEEEEEeeEE------------------CCEEeceeeEEEcCC
Q 026748 193 DGDTINIDVTVYL------------------NGYHGDTSATFFCGD 220 (234)
Q Consensus 193 ~GDiV~iDvg~~~------------------~GY~~D~sRTf~VG~ 220 (234)
+|.++.|+.+.+. .++..-+..|++|.+
T Consensus 201 ~GmV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt~ 246 (255)
T PRK12896 201 PGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTR 246 (255)
T ss_pred CCcEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEcC
Confidence 9999999987752 234555888998864
No 57
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=97.04 E-value=0.0078 Score=52.35 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCC----CCC----------CCCC--CCCCCeeeecCCCce
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA----YPS----------PLGY--GGFPKSVCTSVNECI 181 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga----~ps----------~l~y--~gFp~~v~sg~N~~~ 181 (234)
..++..+++.++++.+.+.++||++-.||++++.+.+.+++. .+. ...| +++...+.....+ .
T Consensus 104 ~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e-~ 182 (243)
T cd01087 104 EQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHD-V 182 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCccccc-C
Confidence 466778888999999999999999999999999998876532 110 0011 1112222222222 1
Q ss_pred ecc--CC-CCCCCCCCCEEEEEEeeEECC-----------EEeceeeEEEcCC
Q 026748 182 CHG--IP-DSRALEDGDTINIDVTVYLNG-----------YHGDTSATFFCGD 220 (234)
Q Consensus 182 ~Hg--~P-~~r~L~~GDiV~iDvg~~~~G-----------Y~~D~sRTf~VG~ 220 (234)
++. .+ ++.+|++|.++.+..+.+..| +-.-+..|++|.+
T Consensus 183 p~~~~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~ 235 (243)
T cd01087 183 GGYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTE 235 (243)
T ss_pred ccccccCCCCCCCCCCCEEEECCEEEeCCcccccccccceeEEEeeeEEEEcC
Confidence 211 23 367899999999999998765 5666788888853
No 58
>PRK07281 methionine aminopeptidase; Reviewed
Probab=97.00 E-value=0.0071 Score=54.81 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCc--eecc-CC-CCCCCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNEC--ICHG-IP-DSRALED 193 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~--~~Hg-~P-~~r~L~~ 193 (234)
..|++.+++.++++.+++.++||++..||++++.+.+.++|... ..++.|+ .|....++. +++. .+ .+.+|++
T Consensus 149 ~~~~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~-~~~~~GH--GIGl~~hE~P~i~~~~~~~~~~~Le~ 225 (286)
T PRK07281 149 EVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGV-VRDLVGH--GVGPTMHEEPMVPNYGTAGRGLRLRE 225 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-CCCeeee--eCCCccCCCCcCCCcccCCCCCEECC
Confidence 46789999999999999999999999999999999999887543 1122111 121112221 1221 12 3568999
Q ss_pred CCEEEEEEeeEE
Q 026748 194 GDTINIDVTVYL 205 (234)
Q Consensus 194 GDiV~iDvg~~~ 205 (234)
|.++.|..+.+.
T Consensus 226 GMV~tiEPgiy~ 237 (286)
T PRK07281 226 GMVLTIEPMINT 237 (286)
T ss_pred CCEEEECCeeEc
Confidence 999999999875
No 59
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=96.90 E-value=0.011 Score=51.28 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCeeeecCCCceeccCCCCCCCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGY--GGFPKSVCTSVNECICHGIPDSRALEDG 194 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y--~gFp~~v~sg~N~~~~Hg~P~~r~L~~G 194 (234)
...+++.+.+.++++++.+.++||++-.||+.++.+.+.+.|+.+.. +| +++...+.++.+... -..+|++|
T Consensus 120 ~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~G~~~~~-~~~~h~~g~~~~~~~~~~~-----~~~~l~~g 193 (228)
T cd01089 120 GKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVE-GVLSHQLKRVVSSGEGKAK-----LVECVKHG 193 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCEEec-CccccCcCceEecCCCCcc-----chhhccCC
Confidence 46788888999999999999999999999999999999999953210 11 111222222222110 14679999
Q ss_pred CEEEEEEeeEECC-EEeceeeEEEcCC
Q 026748 195 DTINIDVTVYLNG-YHGDTSATFFCGD 220 (234)
Q Consensus 195 DiV~iDvg~~~~G-Y~~D~sRTf~VG~ 220 (234)
.++.+.......| +-.-+.-|++|.+
T Consensus 194 mvf~~ep~~~~~g~~~~~~~~Tv~vt~ 220 (228)
T cd01089 194 LLFPYPVLYEKEGEVVAQFKLTVLLTP 220 (228)
T ss_pred cccccceeEccCCCeEEEEEEEEEEcC
Confidence 9999999999876 7789999999964
No 60
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=96.86 E-value=0.0074 Score=54.76 Aligned_cols=93 Identities=25% Similarity=0.311 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceecc-------C-CCCCC
Q 026748 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG-------I-PDSRA 190 (234)
Q Consensus 119 mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg-------~-P~~r~ 190 (234)
.++..+++.++++++.+.++||++-.||++++++.+.+.|..+. .++.|+. + |. ...|+ . .++.+
T Consensus 106 ~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i-~~~~GHg--i--g~--~~~h~g~~ip~i~~~~~~~ 178 (295)
T TIGR00501 106 YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPI-SNLTGHS--M--AP--YRLHGGKSIPNVKERDTTK 178 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCCCCcc--e--ec--ccccCCCccCeecCCCCCE
Confidence 47788888999999999999999999999999999999998763 3333321 1 11 12232 1 23578
Q ss_pred CCCCCEEEEEEeeEE-CCEEeceeeEEEc
Q 026748 191 LEDGDTINIDVTVYL-NGYHGDTSATFFC 218 (234)
Q Consensus 191 L~~GDiV~iDvg~~~-~GY~~D~sRTf~V 218 (234)
|++|+++.|+..+.. .|+..|..+|-+.
T Consensus 179 le~GmV~aIEP~~~~G~G~v~~~~~~~iy 207 (295)
T TIGR00501 179 LEEGDVVAIEPFATDGVGYVTDGGEVSIY 207 (295)
T ss_pred eCCCCEEEEceeEECCcCeEecCCCeEEE
Confidence 999999999987653 6788777766543
No 61
>PLN03158 methionine aminopeptidase; Provisional
Probab=96.70 E-value=0.018 Score=54.52 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCC--ceeccCCC--CCCCCCC
Q 026748 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE--CICHGIPD--SRALEDG 194 (234)
Q Consensus 119 mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~--~~~Hg~P~--~r~L~~G 194 (234)
.|+..+.+.++++.+++.++||++-.||.+++++.+.++|.... .+|.|+ .|....++ .++|+..+ ..+|++|
T Consensus 252 ~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~~G~~~v-~~~~GH--GIG~~~He~P~i~~~~~~~~~~~l~~G 328 (396)
T PLN03158 252 SRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVV-KSYCGH--GIGELFHCAPNIPHYARNKAVGVMKAG 328 (396)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCcc-CCccCC--ccccccCCCCCCCcccCCCCCCEecCC
Confidence 46778888999999999999999999999999999999886431 122222 22222221 24454322 3689999
Q ss_pred CEEEEEEeeEE
Q 026748 195 DTINIDVTVYL 205 (234)
Q Consensus 195 DiV~iDvg~~~ 205 (234)
.++.|+-+.+.
T Consensus 329 MVfTIEP~i~~ 339 (396)
T PLN03158 329 QVFTIEPMINA 339 (396)
T ss_pred cEEEECCeecc
Confidence 99999988764
No 62
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=96.62 E-value=0.022 Score=53.11 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCC-CceeccCC------CCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN-ECICHGIP------DSRA 190 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N-~~~~Hg~P------~~r~ 190 (234)
..|+.-+++.++.+++.++++||++-.|++.++.+.+.++|.... |.+...-|+. ..-.|-.| .+.+
T Consensus 263 ~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~g~~~~------~~h~~GHgvG~~l~vhE~p~~~~~~~~~~ 336 (384)
T COG0006 263 EQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLY------FLHGTGHGVGFVLDVHEHPQYLSPGSDTT 336 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcCCccc------ccCCccccCCCCcccCcCccccCCCCCcc
Confidence 345778899999999999999999999999999999999765432 2222222222 12233333 4678
Q ss_pred CCCCCEEEEEEeeEECC-EEeceeeEEEcCC
Q 026748 191 LEDGDTINIDVTVYLNG-YHGDTSATFFCGD 220 (234)
Q Consensus 191 L~~GDiV~iDvg~~~~G-Y~~D~sRTf~VG~ 220 (234)
|++|-++.++.|.++.| +-.-+..+++|.+
T Consensus 337 L~~GMv~t~Epg~y~~g~~GirIEd~vlVte 367 (384)
T COG0006 337 LEPGMVFSIEPGIYIPGGGGVRIEDTVLVTE 367 (384)
T ss_pred ccCCcEEEeccccccCCCceEEEEEEEEEcC
Confidence 99999999999988654 8889999999965
No 63
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=96.38 E-value=0.031 Score=52.80 Aligned_cols=99 Identities=22% Similarity=0.238 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCeeeecCCCceeccCC------CCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG--FPKSVCTSVNECICHGIP------DSR 189 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~g--Fp~~v~sg~N~~~~Hg~P------~~r 189 (234)
..++....+..+++.+++.++||++-.||+.++++.+.++|+.+. -++.| +...+--|....+++..+ .+.
T Consensus 139 ~~~~l~~aa~~A~~aai~~vkPG~~~~dI~~ai~~v~~~~G~~~v-~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~ 217 (389)
T TIGR00495 139 RKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPV-EGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTA 217 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCeec-CCceeecccceeccCCCeeeecCCccccCCCCCC
Confidence 466677788889999999999999999999999999999997653 22211 111111111122333222 245
Q ss_pred CCCCCCEEEEEEeeEE-CCEEecee-eEEE
Q 026748 190 ALEDGDTINIDVTVYL-NGYHGDTS-ATFF 217 (234)
Q Consensus 190 ~L~~GDiV~iDvg~~~-~GY~~D~s-RTf~ 217 (234)
.|++|+++.||+.+.. .|+.-+.. ||-+
T Consensus 218 ~le~gev~aIEp~vs~G~g~v~~~~~~~ti 247 (389)
T TIGR00495 218 EFEENEVYAVDILVSTGEGKAKDADQRTTI 247 (389)
T ss_pred EecCCCEEEEeeeecCCCceEEECCCeeEE
Confidence 7999999999999974 56555544 3443
No 64
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=96.35 E-value=0.034 Score=53.83 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCeeeecCCCceecc---CC-----C
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY--PSPLGYGGFPKSVCTSVNECICHG---IP-----D 187 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~--ps~l~y~gFp~~v~sg~N~~~~Hg---~P-----~ 187 (234)
..++..+++.+|++++++.++||++-.||++++++.+.+.|.. .-.+.+..+.....-|..-...|+ +| +
T Consensus 264 ~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevies~G~e~~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v~~~~ 343 (470)
T PTZ00053 264 KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVKGGE 343 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcccCcccccccccCCcccCCCCccccCCCcCCeeCCCC
Confidence 4567888889999999999999999999999999999999853 000000001112222222223454 33 3
Q ss_pred CCCCCCCCEEEEEEeeEE-CCEEeceeeEEEc
Q 026748 188 SRALEDGDTINIDVTVYL-NGYHGDTSATFFC 218 (234)
Q Consensus 188 ~r~L~~GDiV~iDvg~~~-~GY~~D~sRTf~V 218 (234)
..+|++|+++.|+..+.. .||..|-.+|-+.
T Consensus 344 ~~~LeeGmVfaIEPf~stG~G~v~~~~~~siY 375 (470)
T PTZ00053 344 NTRMEEGELFAIETFASTGRGYVNEDLECSHY 375 (470)
T ss_pred CCEecCCCEEEEcceeeCCCCeEecCCCceee
Confidence 568999999999998874 7888875555444
No 65
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.077 Score=47.53 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecC--CCceeccC-CC-CCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSV--NECICHGI-PD-SRALE 192 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~--N~~~~Hg~-P~-~r~L~ 192 (234)
+..++.++.+.++|..+.+.++||.+..||.+++++.+..+|..+- -+|.|.. +.-.. .-.++|+. +. ..+|+
T Consensus 120 ~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~~vV-r~~~GHg--ig~~~He~p~ip~y~~~~~~~~l~ 196 (255)
T COG0024 120 EDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVV-RNLTGHG--IGRELHEEPSIPNYGKDGTGVRLK 196 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCEEe-ecccCCc--cCcccCCCCeeccccCCCCCcccC
Confidence 4566778899999999999999999999999999999998886542 3344321 11111 12356632 22 35899
Q ss_pred CCCEEEEEEeeEEC-CEEece
Q 026748 193 DGDTINIDVTVYLN-GYHGDT 212 (234)
Q Consensus 193 ~GDiV~iDvg~~~~-GY~~D~ 212 (234)
+|+++.|+--+... ++..+.
T Consensus 197 ~Gmv~aIEPmi~~G~~~~~~~ 217 (255)
T COG0024 197 EGMVFAIEPMINTGSGEVVEG 217 (255)
T ss_pred CCCEEEEeeEEEcCCCceEec
Confidence 99999998877654 443333
No 66
>PRK10879 proline aminopeptidase P II; Provisional
Probab=95.99 E-value=0.092 Score=50.20 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH----HCCCCCCC-------CCC-CCCCCeeeecCCCceeccCC
Q 026748 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII----DNGAYPSP-------LGY-GGFPKSVCTSVNECICHGIP 186 (234)
Q Consensus 119 mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~----~~Ga~ps~-------l~y-~gFp~~v~sg~N~~~~Hg~P 186 (234)
.|+..+++.++++++.+.++||++-.||...+.+.+. +.|..+.. .+| ..|++.+.-+.. ...|..|
T Consensus 284 q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iG-ldvHd~~ 362 (438)
T PRK10879 284 QREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLG-LDVHDVG 362 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccC-cCcCcCC
Confidence 5677788888999999999999999999998876543 33432100 001 113433322221 1233222
Q ss_pred -----CCCCCCCCCEEEEEEeeEEC----------CEEeceeeEEEcC
Q 026748 187 -----DSRALEDGDTINIDVTVYLN----------GYHGDTSATFFCG 219 (234)
Q Consensus 187 -----~~r~L~~GDiV~iDvg~~~~----------GY~~D~sRTf~VG 219 (234)
++++|++|.++.|..|.++. |+-.-+.-|++|.
T Consensus 363 ~~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT 410 (438)
T PRK10879 363 VYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVIT 410 (438)
T ss_pred CcCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEEC
Confidence 35799999999999999863 4556678888885
No 67
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=95.03 E-value=0.39 Score=41.73 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeee--ecCCCc--eeccCCCCCCCCC
Q 026748 119 MRVSGRLAAQVLEYAGTLV-KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVC--TSVNEC--ICHGIPDSRALED 193 (234)
Q Consensus 119 mR~Aa~ia~~al~~~~~~i-kpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~--sg~N~~--~~Hg~P~~r~L~~ 193 (234)
.|++.+++.++...+.+.+ +||++-.+|++.+.+.+.+.|.+- .+..| +.|. ...++. +.+...++.+|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~--~h~~G--HgIG~~l~~hE~P~i~~~~~~~~~L~~ 188 (224)
T cd01085 113 QKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDY--GHGTG--HGVGSFLNVHEGPQSISPAPNNVPLKA 188 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC--CCCCC--CCCCCCCcCCCCCCcCCcCCCCCCcCC
Confidence 3344455556666666666 589999999999999998887531 01111 1221 111221 1101123578999
Q ss_pred CCEEEEEEeeEECC-EEeceeeEEEcC
Q 026748 194 GDTINIDVTVYLNG-YHGDTSATFFCG 219 (234)
Q Consensus 194 GDiV~iDvg~~~~G-Y~~D~sRTf~VG 219 (234)
|.++.|.-+.+..| +-.-+..|++|.
T Consensus 189 GmvftiEP~iy~~g~~gvried~v~Vt 215 (224)
T cd01085 189 GMILSNEPGYYKEGKYGIRIENLVLVV 215 (224)
T ss_pred CCEEEECCEeEeCCCeEEEeeEEEEEe
Confidence 99999999999754 455688888885
No 68
>PRK13607 proline dipeptidase; Provisional
Probab=94.49 E-value=0.32 Score=46.71 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH----HHCCCCCC-------CCCC--CCCCCeee----ecCCCce
Q 026748 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI----IDNGAYPS-------PLGY--GGFPKSVC----TSVNECI 181 (234)
Q Consensus 119 mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l----~~~Ga~ps-------~l~y--~gFp~~v~----sg~N~~~ 181 (234)
.++.-+++.++.+++.+.++||++-.||+.++++.+ .+.|.... .-++ ..|++.+. ..++++-
T Consensus 270 ~~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~ 349 (443)
T PRK13607 270 FAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVA 349 (443)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCC
Confidence 346788899999999999999999999999887655 44554321 0011 11344332 2222221
Q ss_pred ec----------------cCCCCCCCCCCCEEEEEEeeEECC
Q 026748 182 CH----------------GIPDSRALEDGDTINIDVTVYLNG 207 (234)
Q Consensus 182 ~H----------------g~P~~r~L~~GDiV~iDvg~~~~G 207 (234)
.+ ..-.+++|++|.++.|.-|.++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~ 391 (443)
T PRK13607 350 GFMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLYFID 391 (443)
T ss_pred CcccccccccccccccccccccCCcCCCCcEEEECCeeeeCh
Confidence 00 011357999999999999999864
No 69
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=3.8 Score=37.89 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCeeeecCCCceeccCCC--CCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG--FPKSVCTSVNECICHGIPD--SRALE 192 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~g--Fp~~v~sg~N~~~~Hg~P~--~r~L~ 192 (234)
+..|+-.+.+.++|+.+++.++||++-.||-..+++...++|..- .-.|.| ....+-+.+ .++|+.-+ -.+..
T Consensus 229 e~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~~g~sV-Vr~ycGHGig~~FH~~P--nipHya~n~a~GvM~ 305 (369)
T KOG2738|consen 229 EKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSV-VRSYCGHGIGRVFHCAP--NIPHYAKNKAPGVMK 305 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhcCcee-ehhhhccccccccccCC--CchhhcccCCcceee
Confidence 467888999999999999999999999999999999998877531 112322 112222222 35676543 23577
Q ss_pred CCCEEEEEE
Q 026748 193 DGDTINIDV 201 (234)
Q Consensus 193 ~GDiV~iDv 201 (234)
+|....|+-
T Consensus 306 ~G~tFTIEP 314 (369)
T KOG2738|consen 306 PGQTFTIEP 314 (369)
T ss_pred cCceEEeee
Confidence 788777653
No 70
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=86.89 E-value=2.5 Score=43.31 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCC-----CceeccCCCCCCCC
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN-----ECICHGIPDSRALE 192 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N-----~~~~Hg~P~~r~L~ 192 (234)
.|.++-...-.+.+++...++||.+-.+|...+...+.+.+-+-. ..|.+.+.+|.. ..+.-+.-++++|+
T Consensus 258 emq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~----~~~~k~lG~~iGlEFREssl~inaKnd~~lk 333 (960)
T KOG1189|consen 258 EMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELV----PNFTKNLGFGIGLEFRESSLVINAKNDRVLK 333 (960)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchh----hhhhhhcccccceeeecccccccccchhhhc
Confidence 466777888888899999999999999999999999998764321 124444333321 11222223568999
Q ss_pred CCCEEEEEEeeE-------ECCEEeceeeEEEcCCCCH
Q 026748 193 DGDTINIDVTVY-------LNGYHGDTSATFFCGDVDD 223 (234)
Q Consensus 193 ~GDiV~iDvg~~-------~~GY~~D~sRTf~VG~~s~ 223 (234)
.|++.+|.+|.. -+-|.-=++-|+.||+-++
T Consensus 334 ~gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e~~p 371 (960)
T KOG1189|consen 334 KGMVFNISLGFSNLTNPESKNSYALLLSDTVLVGEDPP 371 (960)
T ss_pred cCcEEEEeeccccccCcccccchhhhccceeeecCCCc
Confidence 999999999874 2347777889999986443
No 71
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=76.09 E-value=9.9 Score=27.67 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=33.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCC-ceeccCCCCCCCCCCCEEEE
Q 026748 137 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNE-CICHGIPDSRALEDGDTINI 199 (234)
Q Consensus 137 ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~-~~~Hg~P~~r~L~~GDiV~i 199 (234)
++.|.|-.|++..+|..+.++=.+ .+-.|... ....-.+-+.+|++||+|.|
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~-----------A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI 73 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKY-----------ALVWGSSVKHSPQRVGLDHVLEDEDVVQI 73 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCe-----------eEEeccCCcCCCeECCCCCEecCCCEEEE
Confidence 466999999999999777654111 11112211 11223466889999999986
No 72
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=70.74 E-value=15 Score=37.25 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeee--cCC---CceeccCCCCCCCCCCC
Q 026748 121 VSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT--SVN---ECICHGIPDSRALEDGD 195 (234)
Q Consensus 121 ~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~s--g~N---~~~~Hg~P~~r~L~~GD 195 (234)
+--.......+.+...++||.+-.+|...+...+...|-+-.| .|-.-+.. |.. ...+...-.+|+||.|+
T Consensus 302 ~Ny~fl~~lQk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~p----nF~~nvG~~igiefR~s~~~~nvkn~r~lq~g~ 377 (1001)
T COG5406 302 KNYEFLYMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGP----NFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAGC 377 (1001)
T ss_pred hhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCc----hHhhhhhhhccccccccccceeccCCceecccc
Confidence 3344555566677889999999999999999999988865321 23333322 211 12233344579999999
Q ss_pred EEEEEEee
Q 026748 196 TINIDVTV 203 (234)
Q Consensus 196 iV~iDvg~ 203 (234)
+.+|.+|-
T Consensus 378 ~fnis~gf 385 (1001)
T COG5406 378 IFNISLGF 385 (1001)
T ss_pred EEEEeecc
Confidence 99998854
No 73
>PRK01490 tig trigger factor; Provisional
Probab=56.55 E-value=48 Score=31.37 Aligned_cols=58 Identities=19% Similarity=0.337 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCCEEEEEEeeEECCEEece----ee
Q 026748 139 PGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDT----SA 214 (234)
Q Consensus 139 pGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GDiV~iDvg~~~~GY~~D~----sR 214 (234)
.-+|+.+|+..+......++-+. +.+++++.||.|.+|+....+|-.-+- ..
T Consensus 130 ~~vtde~vd~~i~~l~~~~a~~~------------------------~~~~~~~~gD~V~vd~~~~~~g~~~~~~~~~~~ 185 (435)
T PRK01490 130 VEVTDEDVDEELERLRKQFATLV------------------------PVERPAENGDRVTIDFVGSIDGEEFEGGKAEDF 185 (435)
T ss_pred CCCCHHHHHHHHHHHHHhCCccc------------------------cccccCCCCCEEEEEEEEEECCEECcCCCCCce
Confidence 35799999999998776654321 223568999999999999988854332 35
Q ss_pred EEEcCC
Q 026748 215 TFFCGD 220 (234)
Q Consensus 215 Tf~VG~ 220 (234)
+|.+|.
T Consensus 186 ~~~lg~ 191 (435)
T PRK01490 186 SLELGS 191 (435)
T ss_pred EEEEcC
Confidence 777773
No 74
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=51.06 E-value=31 Score=25.02 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=31.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCCEEEE
Q 026748 137 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINI 199 (234)
Q Consensus 137 ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GDiV~i 199 (234)
++.|.|-.|++..+|.-+.+. |-..+-.+ +.....+..|++||+|.|
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~-----------F~~A~v~~-----~~~vg~d~~l~d~DVv~i 74 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKG-----------FIEAVGGR-----RRLEGKDVILGKNDILKF 74 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhc-----------cEEEEEcc-----CEEECCCEEecCCCEEEE
Confidence 456999999999999766542 22111112 223345778999999987
No 75
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=48.50 E-value=76 Score=29.73 Aligned_cols=58 Identities=22% Similarity=0.437 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCC-CCCCCCCCCEEEEEEeeEECCEEecee----
Q 026748 139 PGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTS---- 213 (234)
Q Consensus 139 pGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P-~~r~L~~GDiV~iDvg~~~~GY~~D~s---- 213 (234)
.-+|+.+|+..++....+++-+- | .+++++.||.|.+|+....+|-.-+-+
T Consensus 118 ~~vtde~vd~~i~~l~~~~a~~~------------------------~~~~~~~~~gD~V~v~~~~~~dg~~~~~~~~~~ 173 (408)
T TIGR00115 118 VEVTDEDVDEELEKLREQNATLV------------------------PVERRAAEKGDRVTIDFEGFIDGEAFEGGKAEN 173 (408)
T ss_pred CCCCHHHHHHHHHHHHHhCCccc------------------------cccccccCCCCEEEEEEEEEECCEECcCCCCCC
Confidence 35799999999998877765321 1 234689999999999988777554432
Q ss_pred eEEEcCC
Q 026748 214 ATFFCGD 220 (234)
Q Consensus 214 RTf~VG~ 220 (234)
.+|.+|.
T Consensus 174 ~~~~lg~ 180 (408)
T TIGR00115 174 FSLELGS 180 (408)
T ss_pred eEEEECC
Confidence 3777773
No 76
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=45.28 E-value=43 Score=20.30 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 026748 122 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII 155 (234)
Q Consensus 122 Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~ 155 (234)
.|.+...++..+...++...|+.||...+++.+.
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 4678888999999999999999999999988663
No 77
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=42.53 E-value=21 Score=25.90 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCC
Q 026748 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA 159 (234)
Q Consensus 125 ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga 159 (234)
|+..+...+.+..+.++|+.||...+...+.+.|.
T Consensus 40 i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~ 74 (90)
T PF03477_consen 40 IASEVENKLYDSGKEEISTEEIQDIVENALMEEGF 74 (90)
T ss_dssp HHHHHHTC-ST----TEEHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCCh
Confidence 44444444444444499999999999999998764
No 78
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=42.11 E-value=1.3e+02 Score=21.60 Aligned_cols=42 Identities=31% Similarity=0.347 Sum_probs=31.1
Q ss_pred CCCCCCCCEEEEEEeeEE-CCEEecee------eEEEcC--CCCHHHHHHH
Q 026748 188 SRALEDGDTINIDVTVYL-NGYHGDTS------ATFFCG--DVDDEARNLV 229 (234)
Q Consensus 188 ~r~L~~GDiV~iDvg~~~-~GY~~D~s------RTf~VG--~~s~e~~~l~ 229 (234)
.+..++||.|.+++..++ +|-.-|.+ .+|.+| ..-+..++.+
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al 52 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEAL 52 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHH
T ss_pred CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhc
Confidence 356789999999999997 88766666 778887 4555555444
No 79
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=38.62 E-value=98 Score=31.17 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceecc----------CCC
Q 026748 119 MRVSGRLAAQVLEYAGTLVKP-GITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG----------IPD 187 (234)
Q Consensus 119 mR~Aa~ia~~al~~~~~~ikp-GvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg----------~P~ 187 (234)
.|++.-.+-++.-++..++-| |+.-..+|.+.+.++.+.|.+- .+-..-|+....||. .++
T Consensus 428 ek~~yT~VLkGhi~la~~vFP~~t~g~~lD~laR~~LW~~gLDy--------~HgTGHGVG~fLnVhE~P~~is~r~~~~ 499 (606)
T KOG2413|consen 428 EKEAYTLVLKGHIALARAVFPKGTKGSVLDALARSALWKAGLDY--------GHGTGHGVGSFLNVHEGPIGIGYRPYSS 499 (606)
T ss_pred HHHHHHHHHHhhhHhhhcccCCCCCcchhHHHHHHHHHhhcccc--------CCCCCcccccceEeccCCceeeeeecCC
Confidence 455566666666666666655 7778899999999999988752 222222333333332 134
Q ss_pred CCCCCCCCEEEEEEeeEECCE
Q 026748 188 SRALEDGDTINIDVTVYLNGY 208 (234)
Q Consensus 188 ~r~L~~GDiV~iDvg~~~~GY 208 (234)
+-+|+.|-++.+.-|-+-+|.
T Consensus 500 ~~~l~ag~~~s~EPGYY~dg~ 520 (606)
T KOG2413|consen 500 NFPLQAGMVFSIEPGYYKDGE 520 (606)
T ss_pred CchhcCceEeccCCcccccCc
Confidence 667898988888777666653
No 80
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=36.29 E-value=1e+02 Score=22.27 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=31.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCCEEEE
Q 026748 137 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINI 199 (234)
Q Consensus 137 ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GDiV~i 199 (234)
++.|.|-.|.+..+|..+.+. |-..+. ..| ..-.+-+.+|++||+|.|
T Consensus 27 l~~GaTv~D~A~~IHtdi~~~-----------f~~Ai~-~k~---~~~vg~~~~L~dgDvV~I 74 (76)
T cd01669 27 LPKGSTARDLAYAIHTDIGDG-----------FLHAID-ART---GRRVGEDYELKHRDVIKI 74 (76)
T ss_pred ECCCCCHHHHHHHHHHHHHhc-----------ceeeEE-eeC---CEEeCCCcEecCCCEEEE
Confidence 466999999999999766542 211111 112 233466889999999987
No 81
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=33.42 E-value=2.4e+02 Score=27.50 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCHHHHHHH----HHHHHHHCCCCCCCC-----CCCCCCCeeeecCC
Q 026748 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKP--GITTDEIDKA----VHQMIIDNGAYPSPL-----GYGGFPKSVCTSVN 178 (234)
Q Consensus 110 VKs~eEIe~mR~Aa~ia~~al~~~~~~ikp--GvTe~EI~~~----v~~~l~~~Ga~ps~l-----~y~gFp~~v~sg~N 178 (234)
.-|+.+.+.....- ++.+.+++.+++ |.|-.+|-.. +.+.+.+.|...+.- .+.-+|+.|. .+
T Consensus 334 kFs~~Qr~LYeavL----~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~~~Lk~lGI~kt~~ee~~~~~klcPHhVg--Hy 407 (488)
T KOG2414|consen 334 KFSDAQRDLYEAVL----QVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELGIRKTDREEMIQAEKLCPHHVG--HY 407 (488)
T ss_pred ccCcHHHHHHHHHH----HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHhCcccchHHHHHhhhhcCCcccc--hh
Confidence 34566666554444 445566667777 9998888554 445566667543311 1122455432 22
Q ss_pred -CceeccCC---CCCCCCCCCEEEEEEeeEE
Q 026748 179 -ECICHGIP---DSRALEDGDTINIDVTVYL 205 (234)
Q Consensus 179 -~~~~Hg~P---~~r~L~~GDiV~iDvg~~~ 205 (234)
....|-.| .+.+|++|-++.|+-|++.
T Consensus 408 LGmDVHD~p~v~r~~pL~pg~ViTIEPGvYI 438 (488)
T KOG2414|consen 408 LGMDVHDCPTVSRDIPLQPGMVITIEPGVYI 438 (488)
T ss_pred cCcccccCCCCCCCccCCCCceEEecCceec
Confidence 22345444 5789999999999999875
No 82
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=32.27 E-value=1.1e+02 Score=29.74 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCCEEEEEEeeEECCE
Q 026748 140 GITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGY 208 (234)
Q Consensus 140 GvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GDiV~iDvg~~~~GY 208 (234)
-+|+.||+..++.....+.-+ .|.++.++.||.|.||+.+..||=
T Consensus 131 ev~d~dvd~~L~~l~~~~a~~------------------------~~~e~~a~~gD~v~IDf~g~iDg~ 175 (441)
T COG0544 131 EVTDEDVDEELEKLRKRFATL------------------------EPVEGAAENGDRVTIDFEGSVDGE 175 (441)
T ss_pred ccCHHHHHHHHHHHHHhcCcc------------------------cccccccccCCEEEEEEEEEEcCe
Confidence 467888888888655543221 122222899999999999988874
No 83
>PRK05423 hypothetical protein; Provisional
Probab=29.78 E-value=76 Score=24.49 Aligned_cols=29 Identities=28% Similarity=0.530 Sum_probs=23.3
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 026748 128 QVLEYAGTLVKPGITTDEIDKAVHQMIID 156 (234)
Q Consensus 128 ~al~~~~~~ikpGvTe~EI~~~v~~~l~~ 156 (234)
..++-+.+.|+||||..||..++..+-.+
T Consensus 43 lLLdNL~~YIk~~Ms~e~i~~II~nMr~D 71 (104)
T PRK05423 43 LLLDNLSDYIKPGMSIEEIQGIIANMKSD 71 (104)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 35667788899999999999998876543
No 84
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=29.66 E-value=1.4e+02 Score=24.74 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCC
Q 026748 123 GRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY 160 (234)
Q Consensus 123 a~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ 160 (234)
..+++.+...+......+++..||...+++.|.+.|-.
T Consensus 85 ~~i~~~V~~~l~~~~~~~IsveEIqDiVE~~L~~~~~~ 122 (154)
T PRK00464 85 EAAVSRIERQLRASGEREVPSKEIGELVMEELKKLDEV 122 (154)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCE
Confidence 34455555555554446899999999999999998854
No 85
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=27.11 E-value=84 Score=21.37 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHh---hh-cCCC-CCHHHHHHHHHH
Q 026748 118 CMRVSGRLAAQVLEYAG---TL-VKPG-ITTDEIDKAVHQ 152 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~---~~-ikpG-vTe~EI~~~v~~ 152 (234)
...+|++|+.++++.-. +. +..| +|+.|+++++.-
T Consensus 10 GYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~p 49 (55)
T PF10415_consen 10 GYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLDP 49 (55)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTSH
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcCH
Confidence 46788889988886432 22 3456 799999987653
No 86
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=26.79 E-value=2.5e+02 Score=26.64 Aligned_cols=122 Identities=16% Similarity=0.261 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC----CCCe---------------
Q 026748 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG----FPKS--------------- 172 (234)
Q Consensus 112 s~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~g----Fp~~--------------- 172 (234)
|+.||+-+-++-......+......+-|..++.||...++..+.+.-+.|. .|..+ ++.-
T Consensus 98 s~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~sVldt~~SPT-iNlN~lf~~~~~d~~~~~~LQ~~~~~lM 176 (381)
T PF09506_consen 98 SDAELAFLAAVPERMEALLKEFLPAILPELSQEEIEKLIEASVLDTRVSPT-INLNSLFDLVPDDVERQQQLQQMMQELM 176 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc-cchHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999877774 33211 1110
Q ss_pred -------eeec-CCCceeccCCCC----------CCCCCCCEEEEEEeeEE-------------CCEEeceeeEEEcC--
Q 026748 173 -------VCTS-VNECICHGIPDS----------RALEDGDTINIDVTVYL-------------NGYHGDTSATFFCG-- 219 (234)
Q Consensus 173 -------v~sg-~N~~~~Hg~P~~----------r~L~~GDiV~iDvg~~~-------------~GY~~D~sRTf~VG-- 219 (234)
-+-| .|+...|..|+- ++-..||+=.-|+--.+ +-|+.+-+-++.+|
T Consensus 177 ~~Ll~~A~~~GL~~SFFlH~aPNLGrd~~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~~ 256 (381)
T PF09506_consen 177 NELLEKAEAQGLENSFFLHYAPNLGRDANGREILKPATAGDVGTTDIQFMLRGAIKEAGLLVLLNRYIAQRTGKAPLGED 256 (381)
T ss_pred HHHHHHHHhCCcccceEEEeCCCCCCCCCcceeecccccCCCCchhhhhhhhhhhhhcchhHHHHHHHHhhcCCCCccCc
Confidence 1122 367788988851 22345777666664433 33444444444444
Q ss_pred ----CCCHHHHHHHhhhcC
Q 026748 220 ----DVDDEARNLVKGPCR 234 (234)
Q Consensus 220 ----~~s~e~~~l~e~~~E 234 (234)
+.+.....+.+.|++
T Consensus 257 FNvR~AP~~h~~Ll~L~~~ 275 (381)
T PF09506_consen 257 FNVRQAPKSHQELLDLCKE 275 (381)
T ss_pred cccccCchhHHHHHHHHHh
Confidence 567777777777653
No 87
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=25.38 E-value=2.6e+02 Score=26.53 Aligned_cols=122 Identities=16% Similarity=0.254 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-C---CC----------------
Q 026748 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG-F---PK---------------- 171 (234)
Q Consensus 112 s~eEIe~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~g-F---p~---------------- 171 (234)
|+.||+-+-++-......+......+-|..++.||...++..+.+.-+.|. .|..+ | +.
T Consensus 104 s~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~aVldt~~SPT-iNlN~lf~~v~~d~~~~~~LQ~~~~~lM 182 (389)
T TIGR02399 104 SKEEVDFLAAVPDLMRPSLEQIVKKIFPNLVQEEIQTHASKSVLDTRFSPT-INLNSLFDLVKDDSEIRKILQKSFEDLM 182 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc-cchHHHHHHccchHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999877764 33211 1 10
Q ss_pred ------eeeec-CCCceeccCCC---------CCCCCCCCEEEEEEeeEEC-------------CEEec------eeeEE
Q 026748 172 ------SVCTS-VNECICHGIPD---------SRALEDGDTINIDVTVYLN-------------GYHGD------TSATF 216 (234)
Q Consensus 172 ------~v~sg-~N~~~~Hg~P~---------~r~L~~GDiV~iDvg~~~~-------------GY~~D------~sRTf 216 (234)
..+-| .|+...|..|+ -++-.+||+=.-|+--.+. -|+.+ +.++|
T Consensus 183 ~~Ll~~A~~~GL~~SFFlH~aPNLG~d~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~~F 262 (389)
T TIGR02399 183 NELMYKAKTQGLENSFFLHIAPNLGSDNGNEIIKLASKGDIGTTDIQFMLKGAVKEAGVLFLLNKFIYDSTGIAPLGRNF 262 (389)
T ss_pred HHHHHHHHhCCcccceEEEeCCcCCCccccEeecccCCCCCCchhhHHHhcchhhhhhHHHHHHHHHHhccCCCCCCCCC
Confidence 01122 36778888885 1233557777777654333 34334 34444
Q ss_pred EcCCCCHHHHHHHhhhcC
Q 026748 217 FCGDVDDEARNLVKGPCR 234 (234)
Q Consensus 217 ~VG~~s~e~~~l~e~~~E 234 (234)
-|-+.+.....+.+.|++
T Consensus 263 NvR~AP~~h~~Ll~L~~~ 280 (389)
T TIGR02399 263 NFRDAPKSHQELLNLCKK 280 (389)
T ss_pred ccccCCccHHHHHHHHHh
Confidence 444567777777776653
No 88
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=25.32 E-value=2.9e+02 Score=21.07 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 026748 118 CMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII 155 (234)
Q Consensus 118 ~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~ 155 (234)
.||.-.+-+. -|+-+.+.|+|+||..||.+++..+-.
T Consensus 27 KIRDNqKRV~-LLdNL~~YI~~~Ms~edi~~II~nMr~ 63 (95)
T PF04363_consen 27 KIRDNQKRVL-LLDNLSDYIKPDMSIEDIRAIIENMRS 63 (95)
T ss_pred HHhhhHHHHH-HHHHHHHHccCCCCHHHHHHHHHHHHh
Confidence 4444444333 377888999999999999998886543
No 89
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=24.22 E-value=1.8e+02 Score=27.50 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceecc---CCCCCCCCCCCEEEE
Q 026748 139 PGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG---IPDSRALEDGDTINI 199 (234)
Q Consensus 139 pGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg---~P~~r~L~~GDiV~i 199 (234)
.|-|-.|+++.+|.-+.++ |-...-.|. .+.|. .--+.+|+++|+|.|
T Consensus 312 ~GsTV~Dvc~~IH~~l~~~-----------FryA~VWGk--Svk~~~QrVG~dHvLeD~DIV~I 362 (365)
T COG1163 312 RGSTVGDVCRKIHRDLVEN-----------FRYARVWGK--SVKHPGQRVGLDHVLEDEDIVEI 362 (365)
T ss_pred CCCcHHHHHHHHHHHHHHh-----------cceEEEecc--CCCCCccccCcCcCccCCCeEEE
Confidence 4788999999999998875 222223343 22342 123778999999987
No 90
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=23.76 E-value=1.8e+02 Score=24.30 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHCCCCCC
Q 026748 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPS 162 (234)
Q Consensus 117 e~mR~Aa~ia~~al~~~~~~ikpGvTe~EI~~~v~~~l~~~Ga~ps 162 (234)
+-+-..|.++-+....+....+.|.+..||...+.+...+-++.|.
T Consensus 108 d~Hg~~C~vCl~ia~~a~~~~~~Gks~~eIR~~ID~kYk~g~~~pT 153 (158)
T PF13798_consen 108 DDHGTRCGVCLDIAVQAVQMYQEGKSPKEIRQYIDEKYKEGYAKPT 153 (158)
T ss_pred cccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCC
Confidence 4455667788888888888899999999999999998888777775
No 91
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=23.56 E-value=1.1e+02 Score=24.68 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 026748 123 GRLAAQVLEYAGTLVKPGITTDEIDKAVHQ 152 (234)
Q Consensus 123 a~ia~~al~~~~~~ikpGvTe~EI~~~v~~ 152 (234)
+.+|.++-..+.+.+..|.|..||-+.+.+
T Consensus 56 a~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v~ 85 (126)
T TIGR03147 56 SPIAYDLRHEVYSMVNEGKSNQQIIDFMTA 85 (126)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 368888899999999999999999876544
No 92
>COG5011 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.00 E-value=1.8e+02 Score=25.56 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCeeeecCCCceeccCCCCCCCCCCCEEEEEEeeE
Q 026748 141 ITTDEIDKAVHQMIIDNGAYPSPLGY-GGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVY 204 (234)
Q Consensus 141 vTe~EI~~~v~~~l~~~Ga~ps~l~y-~gFp~~v~sg~N~~~~Hg~P~~r~L~~GDiV~iDvg~~ 204 (234)
+++.|+-++++..++++|.- ..| .||-+--..+.-.+.+-|+- ..|+++-+|++..
T Consensus 16 vShLdlmRlidR~iRRAglp---iayT~GFhP~prmsia~alpvG~~-----ssge~fd~eL~e~ 72 (228)
T COG5011 16 VSHLDLMRLIDRTIRRAGLP---IAYTGGFHPHPRMSIAQALPVGIY-----SSGEIFDFELTEE 72 (228)
T ss_pred HHHHHHHHHHHHHHHhcCCc---eeecCCCCCCCceeeccccccccc-----cCceEEEEEeeee
Confidence 57899999999999998852 122 24433222333344444432 3466666665543
No 93
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.67 E-value=1.8e+02 Score=26.46 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEEeeEECCEEeceeeEEEcCCCCHHHHHHHhhh
Q 026748 190 ALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKGP 232 (234)
Q Consensus 190 ~L~~GDiV~iDvg~~~~GY~~D~sRTf~VG~~s~e~~~l~e~~ 232 (234)
.+.+| +|++|-.+++..=.+|++-|=++|..+++..+-|+-+
T Consensus 201 ~~~~G-Pv~fDPA~y~GDrE~Dlam~elFggfp~efy~gY~sv 242 (286)
T COG3001 201 FGKDG-PVIFDPACYWGDRECDLAMLELFGGFPPEFYDGYQSV 242 (286)
T ss_pred ccCCC-CeeeccccccCCcccceehhhhhcCCcHHHHHhhhcc
Confidence 45677 9999999999888999999999998888888777643
No 94
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=21.62 E-value=52 Score=28.34 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=35.0
Q ss_pred Cceecc--CCCCCCCCCCCEEEEEEeeEECCE-EeceeeEEEcCCCCHHHHH
Q 026748 179 ECICHG--IPDSRALEDGDTINIDVTVYLNGY-HGDTSATFFCGDVDDEARN 227 (234)
Q Consensus 179 ~~~~Hg--~P~~r~L~~GDiV~iDvg~~~~GY-~~D~sRTf~VG~~s~e~~~ 227 (234)
...||| .|.|-.+.++.+..||+.-.--|. ..|+++++..-.-++.++.
T Consensus 153 ~~~~HgD~~~~Nii~~~~~~~iIDwe~a~~Gdp~~Dla~~~~~~~~~~~~~~ 204 (226)
T TIGR02172 153 STCLHGDFQIGNLITSGKGTYWIDLGDFGYGNPLFDLGLLFMFCHYLDDDKL 204 (226)
T ss_pred CceEecCCCCCcEEEcCCCcEEEechhcCcCCHHHHHHHHHHhccCChhHHH
Confidence 355897 466767776668899998775554 7799998888665555443
No 95
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=21.21 E-value=2.1e+02 Score=18.13 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCHHHHHHHHHH
Q 026748 110 VHDEKGIECMRVSGRLAAQV-LEYAGTLVKPGITTDEIDKAVHQ 152 (234)
Q Consensus 110 VKs~eEIe~mR~Aa~ia~~a-l~~~~~~ikpGvTe~EI~~~v~~ 152 (234)
--|++|-+.+.+|...-..- ...+...+..|-|..++......
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 45889999999998887777 88888877778888888765543
No 96
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=21.12 E-value=1.4e+02 Score=20.30 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=31.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCeeeecCCCceeccCCCCCCCCCCCEEEE
Q 026748 137 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINI 199 (234)
Q Consensus 137 ikpGvTe~EI~~~v~~~l~~~Ga~ps~l~y~gFp~~v~sg~N~~~~Hg~P~~r~L~~GDiV~i 199 (234)
+..|.|-.|++..++..+.++- +..-+|.. -..-+++|++||.|.|
T Consensus 13 ~~~g~T~~d~A~~I~~~l~~~~--------------~~A~Vng~---~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 13 LPEGSTVLDVAYSIHSSLAKRA--------------VAAKVNGQ---LVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EETTBBHHHHHHHHSHHHHHCE--------------EEEEETTE---EEETTSBB-SSEEEEE
T ss_pred CCCCCCHHHHHHHHCHHHHhhe--------------eEEEEcCE---ECCCCCCcCCCCEEEE
Confidence 5679999999999999887741 12223431 2245789999999876
No 97
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=20.49 E-value=30 Score=23.08 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 026748 113 EKGIECMRVSGRLAAQVLEYAGTLVKPGI 141 (234)
Q Consensus 113 ~eEIe~mR~Aa~ia~~al~~~~~~ikpGv 141 (234)
.++|+.+|+|-......+..++..++.|.
T Consensus 15 gdDLd~lR~~~dF~~~sl~~Li~aL~~G~ 43 (47)
T PF14615_consen 15 GDDLDELRKAPDFTDKSLPLLIDALQQGT 43 (47)
T ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhcc
Confidence 46888899888888888888888887775
Done!