Query 026749
Match_columns 234
No_of_seqs 76 out of 78
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 12:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3264 Uncharacterized conser 100.0 7.2E-79 1.6E-83 523.7 1.6 199 1-206 19-221 (221)
2 PF09637 Med18: Med18 protein; 100.0 6.2E-39 1.3E-43 285.2 20.2 188 1-194 1-245 (250)
3 TIGR00318 cyaB adenylyl cyclas 98.0 0.00083 1.8E-08 56.9 17.7 144 12-183 11-158 (174)
4 cd07890 CYTH-like_AC_IV-like A 97.0 0.09 2E-06 43.8 16.6 144 12-183 9-155 (169)
5 COG1437 CyaB Adenylate cyclase 96.1 0.89 1.9E-05 39.7 17.7 143 13-183 12-159 (178)
6 PF01928 CYTH: CYTH domain; I 94.6 2.2 4.8E-05 35.2 14.7 144 11-183 12-168 (185)
7 cd07758 ThTPase Thiamine Triph 94.4 2.8 6E-05 36.3 14.9 145 15-183 11-176 (196)
8 PLN02318 phosphoribulokinase/u 86.0 30 0.00065 35.9 14.8 93 34-139 279-372 (656)
9 PF10980 DUF2787: Protein of u 81.1 4.6 9.9E-05 33.5 5.7 22 46-70 39-60 (128)
10 PRK14644 hypothetical protein; 52.1 29 0.00064 28.8 4.7 66 101-181 7-86 (136)
11 PHA00432 internal virion prote 47.2 13 0.00029 31.2 2.0 26 97-122 106-131 (137)
12 PRK14639 hypothetical protein; 43.4 1E+02 0.0022 25.6 6.6 89 98-200 3-107 (140)
13 PF14814 UB2H: Bifunctional tr 41.8 31 0.00068 26.0 3.1 16 96-111 10-25 (85)
14 PRK14643 hypothetical protein; 40.2 77 0.0017 27.1 5.6 95 97-201 14-128 (164)
15 KOG4431 Uncharacterized protei 38.8 29 0.00062 27.9 2.5 43 159-210 7-49 (100)
16 PRK14647 hypothetical protein; 37.3 1.5E+02 0.0032 25.0 6.8 73 97-182 13-101 (159)
17 COG4293 Uncharacterized protei 33.3 60 0.0013 28.3 3.8 64 113-180 110-183 (184)
18 TIGR02914 EpsI_fam EpsI family 32.7 61 0.0013 27.1 3.7 36 151-186 135-170 (174)
19 TIGR00191 thrB homoserine kina 30.4 1.1E+02 0.0023 27.9 5.2 47 161-209 54-107 (302)
20 PRK14640 hypothetical protein; 27.5 2.5E+02 0.0055 23.4 6.6 91 97-201 11-121 (152)
21 cd06587 Glo_EDI_BRP_like This 27.4 1.7E+02 0.0036 20.0 4.8 40 96-135 10-50 (112)
22 PRK01212 homoserine kinase; Pr 27.0 1.2E+02 0.0026 27.2 4.9 47 161-209 56-108 (301)
23 cd03421 SirA_like_N SirA_like_ 26.2 70 0.0015 22.4 2.6 31 89-121 31-62 (67)
24 PF08608 Wyosine_form: Wyosine 25.9 72 0.0016 23.1 2.6 32 155-187 5-45 (62)
25 PF10482 CtIP_N: Tumour-suppre 25.7 38 0.00083 28.0 1.3 16 12-27 56-72 (120)
26 PF11240 DUF3042: Protein of u 23.9 26 0.00056 25.2 -0.0 19 192-210 7-25 (54)
27 PRK14646 hypothetical protein; 23.6 3.5E+02 0.0075 22.8 6.7 76 97-183 12-103 (155)
28 cd07417 MPP_PP5_C PP5, C-termi 22.8 95 0.0021 29.1 3.5 38 95-135 232-273 (316)
29 COG0779 Uncharacterized protei 22.4 3.7E+02 0.008 22.9 6.7 73 96-182 12-101 (153)
30 PF08527 PAD_M: Protein-argini 22.3 3.3E+02 0.0071 23.6 6.4 78 30-135 78-158 (159)
31 PF08549 SWI-SNF_Ssr4: Fungal 22.1 1.3E+02 0.0029 31.4 4.6 81 29-121 89-194 (669)
32 cd07235 MRD Mitomycin C resist 22.0 3.3E+02 0.0071 20.0 7.5 23 90-112 4-28 (122)
33 cd09012 Glo_EDI_BRP_like_24 Th 21.6 3.5E+02 0.0075 20.1 6.9 26 89-114 3-30 (124)
34 PTZ00167 RNA polymerase subuni 20.6 1E+02 0.0022 26.3 2.9 26 108-133 82-109 (144)
35 COG1992 Uncharacterized conser 20.5 90 0.002 27.5 2.6 44 67-110 61-113 (181)
36 COG0083 ThrB Homoserine kinase 20.4 1.7E+02 0.0037 27.5 4.6 48 161-210 53-105 (299)
37 PF11984 DUF3485: Protein of u 20.3 1.4E+02 0.0029 25.1 3.7 35 151-186 167-201 (206)
No 1
>KOG3264 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.2e-79 Score=523.75 Aligned_cols=199 Identities=51% Similarity=0.784 Sum_probs=192.0
Q ss_pred CeeEEEEEEeccChHHHHHHHhhhcCCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCcc
Q 026749 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAE 80 (234)
Q Consensus 1 ~Ec~LqGsi~~~~ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~ 80 (234)
|||+|||||++++||+|++||+|||||++|+|++|||||...++.++.+.++|+||++++++++||+||+|+||+| |+
T Consensus 19 mEcvlqGsI~~~~ve~Le~rL~GLCd~~~E~f~dhEmcfslr~~~~~~~~l~R~~r~ldr~~~~wqlkylG~pe~g--d~ 96 (221)
T KOG3264|consen 19 MECVLQGSILDQHVEALEHRLQGLCDNQRERFRDHEMCFSLRPNLAVVPSLLRLRRDLDRPEAPWQLKYLGGPERG--DD 96 (221)
T ss_pred chhheechHhhcchHHHHHHHHhccccchhhhhhhhheeeecCCcCccHHHHHHHHhccCCCCceEEEecCCCCcc--cc
Confidence 7999999999999999999999999999999999999998878778889999999999999999999999999975 99
Q ss_pred CcceeeeeeEEEeeeccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC--CCccCCCceeEEE
Q 026749 81 QISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVE 158 (234)
Q Consensus 81 ~~pa~VR~~id~~~S~~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d--~~~~v~~~s~LVE 158 (234)
+||++||||||++||+|+++|+++||||+||||+++||+|+ ||+|||+||+.+++..||.+| +++|+++ |||||
T Consensus 97 ~~ptlVRn~id~~~S~n~l~~~~~lG~rlDhEy~akG~lf~---kgrmkI~vs~l~~~~~pg~~d~~s~~pvS~-sylve 172 (221)
T KOG3264|consen 97 QRPTLVRNCIDSAVSKNALRFLYELGFRLDHEYLAKGFLFR---KGRMKISVSKLSVIKVPGVHDIDSAEPVSP-SYLVE 172 (221)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHhcccccHHHHhhhhhhc---ccceEEEEEEEEEeccCcccccccccccCc-ccEEE
Confidence 99999999999999999999999999999999999999999 799999999999999999888 7888999 59999
Q ss_pred EE--cCCCCCChHHHHHHHHHHHhhhccceeeecCCcccCcccchhHHHH
Q 026749 159 VT--APASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAV 206 (234)
Q Consensus 159 vS--apa~~e~~~~~a~~i~~FAeqL~PlV~L~K~d~~~~~~~t~~~~a~ 206 (234)
|| ||+++||| ++|++||.|||||+|||||||||||++++||||||||
T Consensus 173 lsV~aPa~~E~~-~va~~mr~FaeqL~PLVhleKidy~r~m~p~~aa~~~ 221 (221)
T KOG3264|consen 173 LSVVAPAGQENY-EVAAAMRSFAEQLKPLVHLEKIDYKRLMVPTAAAAAA 221 (221)
T ss_pred EEEecCCccchh-hHHHHHHHHHHHhhhhhccccCChhhccccccccccC
Confidence 97 99999999 9999999999999999999999999999999999875
No 2
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=100.00 E-value=6.2e-39 Score=285.17 Aligned_cols=188 Identities=26% Similarity=0.406 Sum_probs=154.9
Q ss_pred CeeEEEEEEeccChHHHHHHHhhhcCC-CCccceEEeEEEeeCC----------CCCCCCeEEEEeeeCCCC--------
Q 026749 1 MECVVQGIIETQHVEALEILLQGICGV-HRDRLRVHEICLKNNP----------NLGNVASEVRLLCDLEQP-------- 61 (234)
Q Consensus 1 ~Ec~LqGsi~~~~ve~L~~RL~GLCd~-~~e~f~~hE~vfk~~~----------~~g~~~~~lRlrr~L~~p-------- 61 (234)
|||+|+|+|++++.+.+++||+||||+ .|++|++||+|||-.+ +.+..++.+|+++.+...
T Consensus 1 ~El~L~~sV~~~~~~~~l~~L~gl~~~~~p~~~~~~~lvfkp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (250)
T PF09637_consen 1 QELSLFGSVPDSDYEQLLSRLRGLCGMVQPEEFAERELVFKPNRSYKPSFLPGKNQQVQPLRMRLSQQLPKQSNGGQYYY 80 (250)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHCCC--EEEEEEEEEEEEE-TTS---SB-SSSBB-GGCSEEEEEEGGGCGHSSSTSC
T ss_pred CeEEEEEEEecchHHHHHHHHHHHhCCCCccceeeEEEEecCCCcccccccCCCcCCCcHHHHHHHHhhhhhcccccccc
Confidence 699999999999999999999999999 7999999999997321 124578899999996432
Q ss_pred --------------------------CCceEEEEecccccCCCccCcceeeeeeEEEe---eeccHHHHHHHhCceeeEE
Q 026749 62 --------------------------EPTWTVKHLGGAMRGAGAEQISVLVRSMVESK---VSKNALRLFNALGYKLDHE 112 (234)
Q Consensus 62 --------------------------~~~W~lryiG~pe~g~g~~~~pa~VR~~id~~---~S~~v~~Fl~~LGfr~dyE 112 (234)
+.+|+|||.|.||+| + ++++++|+++++. +++|+++|+++|||+++||
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~W~Lr~~d~Pe~~--~-~~~v~~r~~~~~~i~~~~~~~~~fl~~lGy~~~~E 157 (250)
T PF09637_consen 81 QVVKDVSEDDFGIEASELFSGDDQSGSQPWTLRYSDIPEAG--K-NRPVTVRTIIESTIVGTSGSLLSFLNELGYRFDYE 157 (250)
T ss_dssp CCCTTHSSSTT-TTGGG---------SSSEEEEEEE--GCC--S-TTSSEEEEEEEEEEEESSSSHHHHHHHTTEEEEEE
T ss_pred ccccccccccCCccccccccccccccCCcEEEEEecCCCCC--C-CCceeEEEEEEEEEecCCCCHHHHHHHcCCceEEE
Confidence 478999999999973 5 8999999999998 5899999999999999999
Q ss_pred EEEEeeEEEEeeCceEEEEEEEEeeecccCCC----CCCcc-CCCceeEEEEE--cCCCCCC--hHHHHHHHHHHHhhhc
Q 026749 113 LLRVGFAFHFQRGAQITVTVSSVNKMLKLHAT----DEAVP-VTPGIQLVEVT--APASSEN--YTEVASAVSSFCEYLA 183 (234)
Q Consensus 113 ~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~----d~~~~-v~~~s~LVEvS--apa~~e~--~~~~a~~i~~FAeqL~ 183 (234)
|+.+||+|. +|+|+|+++||+++.+.+.. +...+ -.+++|+||++ +|.++|. +..+.++|..|+|||+
T Consensus 158 yv~~G~~F~---~g~i~I~l~ri~~~~~~~~~~~~~~~l~~~d~s~~~lv~a~v~v~~~~d~~~i~~~~~~L~~~~~~Lk 234 (250)
T PF09637_consen 158 YVVEGYRFF---KGDIVIELFRIFKVPPPGQYPPPFDKLKPLDPSGSWLVEASVNVPDGTDPERINKASKELLKFQEQLK 234 (250)
T ss_dssp EEEEEEEEE---ECCEEEEEEEEEEEETTCCE---SS-EEECTTTTEEEEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEE---ECCEEEEEEEEEecCCCCCCCCCcccCCccCCCCCEEEEEEEEccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999 59999999999999888877 44444 67789999997 7766554 5566777888999999
Q ss_pred cceeeecCCcc
Q 026749 184 PLLHLSKPGVS 194 (234)
Q Consensus 184 PlV~L~K~d~~ 194 (234)
|+|+|+++|+.
T Consensus 235 ~~v~L~~~DR~ 245 (250)
T PF09637_consen 235 GLVDLEKPDRK 245 (250)
T ss_dssp TTS--B---GG
T ss_pred ccEEEEecccc
Confidence 99999999985
No 3
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=98.03 E-value=0.00083 Score=56.88 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=100.0
Q ss_pred cChHHHHHHHhhhcCCCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 026749 12 QHVEALEILLQGICGVHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (234)
Q Consensus 12 ~~ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~-~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~i 90 (234)
.+.+.+.++|+.+.........++-+.|-.+. ........||+|+. + ..+.+-|=|++. + ....+|.-+
T Consensus 11 ~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~-~---~~~~lT~Kgp~~----~--~~~~~~~E~ 80 (174)
T TIGR00318 11 PDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKL-T---GEKFVTYKGPKI----D--NESKTRKEI 80 (174)
T ss_pred CCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEc-C---CcEEEEEeCCcc----C--CcceEEEEE
Confidence 36789999999765443355567777786432 11234679999986 2 345566656433 2 235699999
Q ss_pred EEeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCceeEEEEEcCCC-CCC
Q 026749 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPAS-SEN 167 (234)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVEvSapa~-~e~ 167 (234)
++.+.+ .+...|+.|||+...++-+.-..|++ +.++|++..+-. + | +.|||-.++. ++.
T Consensus 81 e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~~~l---~~~~i~lD~v~~------------l--G-~FvEIE~~~~~~~~ 142 (174)
T TIGR00318 81 EFKIEDIENALQILKKLGFKKVYEVIKKRRIYQT---NELNVSIDDVEG------------L--G-FFLEIEKIINNIND 142 (174)
T ss_pred EEEECCHHHHHHHHHHCCCeEEEEEEEEEEEEEE---CCEEEEEEccCC------------C--c-cEEEEEEecCCccc
Confidence 999964 67779999999999999999999995 777777654322 2 5 5669976554 345
Q ss_pred hHHHHHHHHHHHhhhc
Q 026749 168 YTEVASAVSSFCEYLA 183 (234)
Q Consensus 168 ~~~~a~~i~~FAeqL~ 183 (234)
..++-+.+..+|+.|-
T Consensus 143 ~~~~~~~i~~~~~~LG 158 (174)
T TIGR00318 143 KDLALEEIFEIINQLG 158 (174)
T ss_pred hHHHHHHHHHHHHHcC
Confidence 5666777888887763
No 4
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=97.01 E-value=0.09 Score=43.77 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=97.6
Q ss_pred cChHHHHHHHhhhcCCCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 026749 12 QHVEALEILLQGICGVHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (234)
Q Consensus 12 ~~ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~-~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~i 90 (234)
.+.+++..+|+.+.+........+-+.|-++. ........||+|+.-+ +..|.+-|=|.... |. .-.|...
T Consensus 9 ~d~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~--~~~~~lT~K~~~~~--~~----~~~~~E~ 80 (169)
T cd07890 9 DDLEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGD--SGKTLLTYKGPKLD--GG----PKVREEI 80 (169)
T ss_pred CCHHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCC--CCcEEEEEECCCCC--CC----ccceEEE
Confidence 35788889998876665455566666775431 1123467899998732 24577777665432 21 2278888
Q ss_pred EEeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCceeEEEEEcCCCCCCh
Q 026749 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENY 168 (234)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVEvSapa~~e~~ 168 (234)
++.+.+ .+..-|+.|||+.-+.+-+.=..|.+ +...|++-.+.. .| +.+||-+...+ .
T Consensus 81 e~~v~~~~~~~~iL~~lg~~~~~~~~K~R~~~~~---~~~~v~lD~~~~--------------lG-~f~EiE~~~~~--~ 140 (169)
T cd07890 81 ETEVADPEAMKEILERLGFGPVGRVKKEREIYLL---GQTRVHLDRVEG--------------LG-DFVEIEVVLED--I 140 (169)
T ss_pred EEecCCHHHHHHHHHHcCCceeEEEEEEEEEEEE---CCEEEEEEccCC--------------CC-ceEEEEEEeCC--c
Confidence 888854 66678999999999999999889986 567777766553 24 57888544323 3
Q ss_pred HHHHHHHHHHHhhhc
Q 026749 169 TEVASAVSSFCEYLA 183 (234)
Q Consensus 169 ~~~a~~i~~FAeqL~ 183 (234)
.++.+.+..++++|-
T Consensus 141 ~~~~~~l~~~~~~lg 155 (169)
T cd07890 141 EEAEEGLGEAAELLG 155 (169)
T ss_pred HHHHHHHHHHHHHcC
Confidence 457788888887763
No 5
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.89 Score=39.75 Aligned_cols=143 Identities=13% Similarity=0.200 Sum_probs=99.8
Q ss_pred ChHHHHHHHhhhcCCCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEE
Q 026749 13 HVEALEILLQGICGVHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVE 91 (234)
Q Consensus 13 ~ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~-~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~id 91 (234)
+.+.+..||+.+-......-.++.+-|..+- +--..+=-+|+|+..+ ..-.+-|-|.=.- .. .=.|.-++
T Consensus 12 d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~---~~~~lTYKgp~ld---~~---~k~r~E~E 82 (178)
T COG1437 12 DLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRING---GEVFLTYKGPKLD---RE---SKTREEIE 82 (178)
T ss_pred CHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecC---CcEEEEEeccccc---cc---ccceeeEE
Confidence 6789999999887765566566777776531 1123467789884422 3455556554331 21 14799999
Q ss_pred Eeee--ccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCceeEEEE--EcCCCCCC
Q 026749 92 SKVS--KNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEV--TAPASSEN 167 (234)
Q Consensus 92 ~~~S--~~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVEv--Sapa~~e~ 167 (234)
+.++ +++.+.|+.|||+.-....+.=-.|+ .|.+.|++-.|..+ | -.||| ..+. ++.
T Consensus 83 ~~v~D~~~~~~il~~LGF~~~~~VkK~R~iY~---~~~~~i~lD~VegL---G------------~F~EIE~~~~d-~~e 143 (178)
T COG1437 83 IEVSDVEKALEILKRLGFKEVAVVKKTREIYK---VGNVTIELDAVEGL---G------------DFLEIEVMVDD-ENE 143 (178)
T ss_pred EEeCCHHHHHHHHHHcCCceeeEEEEEEEEEe---eCCEEEEEecccCC---c------------ccEEEEEecCC-chh
Confidence 9999 49999999999999999999999999 58899888777665 1 35566 3444 333
Q ss_pred hHHHHHHHHHHHhhhc
Q 026749 168 YTEVASAVSSFCEYLA 183 (234)
Q Consensus 168 ~~~~a~~i~~FAeqL~ 183 (234)
++.+-+.+..|+.+|-
T Consensus 144 ~~~~~~~~~~i~~~lG 159 (178)
T COG1437 144 IDGAKEEIEEIARQLG 159 (178)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 4455567888988874
No 6
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=94.58 E-value=2.2 Score=35.19 Aligned_cols=144 Identities=16% Similarity=0.281 Sum_probs=86.1
Q ss_pred ccChHHHHHHHhhhcCCCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeee
Q 026749 11 TQHVEALEILLQGICGVHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSM 89 (234)
Q Consensus 11 ~~~ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~~-~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~ 89 (234)
....+.|..+|..+........+.+.+-|-++.. .......||+|..- +..|.+-|=+....| . |..
T Consensus 12 ~~~~~~l~~~l~~~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~---~~~~~lTlK~~~~~~--~-------~~e 79 (185)
T PF01928_consen 12 ESDFEKLRLRLESLGAEFPKEEHQTDTYFDTPDRDLRKAGIALRIRREN---GDGWYLTLKGPGSDG--P-------REE 79 (185)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEEEEEEEEEEETTTHHHHTTSEEEEEEET---TTEEEEEEEEESSSS--S-------EEE
T ss_pred HHHHHHHhhhhhhhccccCeEEEEEEEEEeCCChhHHhCCcEEEEEeec---CCccEEEEEccCccC--c-------ccc
Confidence 3345566556666655544555555666654321 11235899999541 234555554544321 1 555
Q ss_pred EEEeee-----------ccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCceeEEE
Q 026749 90 VESKVS-----------KNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE 158 (234)
Q Consensus 90 id~~~S-----------~~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVE 158 (234)
++..++ +++.+++..+||..-.++-+.-..|++ +| +.|.+..+.-. . -+-+|
T Consensus 80 ~~~~~~r~e~e~~i~~~~~~~~~l~~l~l~~~~~~~k~R~~~~~--~~-~~v~lD~~~~~-------------~-~~~~E 142 (185)
T PF01928_consen 80 IEFEVSREEYEAPISDAEEMREILEALGLRPVARIEKKRRSYRL--EG-VEVELDEVDGL-------------P-GTFLE 142 (185)
T ss_dssp EEEEESHHCCEEEHSHHHHHHHHHHHTTCEEEEEEEEEEEEEEE--TT-EEEEEEEETTT-------------T-EEEEE
T ss_pred cceeecchhhhccccchHHHHHHHHHhcCceeEEEEEEEEEEEE--CC-EEEEEEEEecc-------------e-EEEEE
Confidence 555554 378999999999999999999999997 44 77666655432 3 37888
Q ss_pred EEcCCC-CCChHHHHHHHHHHHhhhc
Q 026749 159 VTAPAS-SENYTEVASAVSSFCEYLA 183 (234)
Q Consensus 159 vSapa~-~e~~~~~a~~i~~FAeqL~ 183 (234)
|=+.++ .+...++.+.|..+...|.
T Consensus 143 iE~~~~~~~~~~~~~~~i~~~~~~l~ 168 (185)
T PF01928_consen 143 IEIESEDEEDLKEAAEEILALLNELG 168 (185)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCHhHHHHHHHHHHHHhhhcC
Confidence 854333 2233345555555555554
No 7
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=94.43 E-value=2.8 Score=36.34 Aligned_cols=145 Identities=10% Similarity=0.079 Sum_probs=86.8
Q ss_pred HHHHHHHhhhcC--CCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEE
Q 026749 15 EALEILLQGICG--VHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVE 91 (234)
Q Consensus 15 e~L~~RL~GLCd--~~~e~f~~hE~vfk~~~-~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~id 91 (234)
+.+..+|+.+-. ....+...+.+.|-++. ........||+|.. .|+++|-+.-.. .-.--...|+.+.
T Consensus 11 ~~~~~~L~~~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~~------~~~lk~~~~~~~---~~~~~~~~~~E~~ 81 (196)
T cd07758 11 PSAEERLRKLGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRNG------QWELKIPPGGDP---PTAGANTRYEELT 81 (196)
T ss_pred HHHHHHHHhccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEECC------eEEEEecCCCCC---CCCCCcceEEecc
Confidence 455666654432 22344556666675431 12345789999964 799999432110 0011245666655
Q ss_pred Eee----------------eccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCcee
Q 026749 92 SKV----------------SKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQ 155 (234)
Q Consensus 92 ~~~----------------S~~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~ 155 (234)
... .+.+.+.+..|||+.--+|-+.=..|++ ++.+.|++-.+. .| . .-+
T Consensus 82 ~~~~~~~~v~~~~~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~--~~g~~v~LD~~~----~G-~--------~~~ 146 (196)
T cd07758 82 GEAAIAAALRKLLGGALPSAGGLGDELANLGLREFASFVTKRESWKL--DGAFRVDLDRTD----FG-Y--------SVG 146 (196)
T ss_pred cHHHHHHHHHHhcCCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEc--CCCcEEEEeccc----CC-c--------ceE
Confidence 433 1235689999999999999998888886 547777776655 11 1 012
Q ss_pred EEEEEcCC--CCCChHHHHHHHHHHHhhhc
Q 026749 156 LVEVTAPA--SSENYTEVASAVSSFCEYLA 183 (234)
Q Consensus 156 LVEvSapa--~~e~~~~~a~~i~~FAeqL~ 183 (234)
=||+-+.. .++....+-+.|..|+++|.
T Consensus 147 EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg 176 (196)
T cd07758 147 EVELLVEEEDNEAEVPAALAKIDELISALM 176 (196)
T ss_pred EEEEEEecccchhhHHHHHHHHHHHHHHhC
Confidence 33333333 23455677888999999885
No 8
>PLN02318 phosphoribulokinase/uridine kinase
Probab=85.95 E-value=30 Score=35.93 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=69.4
Q ss_pred EEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEEeeeccHHHHHHHhCceeeEE
Q 026749 34 VHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHE 112 (234)
Q Consensus 34 ~hE~vfk~~~-~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~id~~~S~~v~~Fl~~LGfr~dyE 112 (234)
.++|-|.-+. ..+...-+||+|.. +-+..|-|- .|-. | -|-++++-++..++=.+..-|.+|||+..-.
T Consensus 279 ~~DiYl~~P~~d~~~~~e~LRvR~~----~Gk~~Ltyk-e~i~---d--gp~ii~pk~~fEv~v~~~~gL~aLGy~~~a~ 348 (656)
T PLN02318 279 TYDIYLLPPGEDPETCQSYLRMRNR----DGKYSLMFE-EWVT---D--EPFIISPRITFEVSVRLLGGLMALGYTIATI 348 (656)
T ss_pred eeEEEecCCCCCchhccceEEEEec----CCEEEEEEe-cccc---c--CCeecCcceeEEEeeehHhHHHHcCCceEEE
Confidence 4567775431 12345788999976 557888883 4432 3 3455666777777778888999999999999
Q ss_pred EEEEeeEEEEeeCceEEEEEEEEeeec
Q 026749 113 LLRVGFAFHFQRGAQITVTVSSVNKML 139 (234)
Q Consensus 113 ~~~~G~~f~~~~~g~ikI~Vs~v~k~~ 139 (234)
+=+.=..|+ .|.+.|.+-.|..+.
T Consensus 349 vkk~r~iy~---~g~v~i~lD~ve~Lg 372 (656)
T PLN02318 349 LKRSSHVFS---DDKVCVKIDWLEQLN 372 (656)
T ss_pred EEEEEEEEe---cCCEEEEeehhhccC
Confidence 999999999 799999998887763
No 9
>PF10980 DUF2787: Protein of unknown function (DUF2787); InterPro: IPR021248 This bacterial family of proteins has no known function. ; PDB: 2W56_A 2V1L_A.
Probab=81.07 E-value=4.6 Score=33.50 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=14.2
Q ss_pred CCCCeEEEEeeeCCCCCCceEEEEe
Q 026749 46 GNVASEVRLLCDLEQPEPTWTVKHL 70 (234)
Q Consensus 46 g~~~~~lRlrr~L~~p~~~W~lryi 70 (234)
|=-|||+||.| ..+.+|+++|+
T Consensus 39 GfHPVEIrl~r---~~~~~W~i~yI 60 (128)
T PF10980_consen 39 GFHPVEIRLER---SSSDQWQIVYI 60 (128)
T ss_dssp -S--EEEEEEE----TTS-EEEEEE
T ss_pred CcCCEEEEEEE---cCCCCEEEEEE
Confidence 66799999999 34678999954
No 10
>PRK14644 hypothetical protein; Provisional
Probab=52.06 E-value=29 Score=28.77 Aligned_cols=66 Identities=12% Similarity=0.286 Sum_probs=41.2
Q ss_pred HHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC-------------CCccCCCceeEEEEEcCCCCC
Q 026749 101 LFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD-------------EAVPVTPGIQLVEVTAPASSE 166 (234)
Q Consensus 101 Fl~~LGfr~-dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d-------------~~~~v~~~s~LVEvSapa~~e 166 (234)
-++++||.+ |-||.++|-.+. +.|.+.+. ..| +.....++.|.-|||.|--+.
T Consensus 7 ~~~~~g~el~dve~~~~~~~~~------LrV~Idk~-------~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 73 (136)
T PRK14644 7 LLEKFGNKINEIKIVKEDGDLF------LEVILNSR-------DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDM 73 (136)
T ss_pred hHHhcCCEEEEEEEEeCCCCEE------EEEEECCC-------CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCC
Confidence 578899998 889988876554 33444321 233 223344678999999997666
Q ss_pred ChHHHHHHHHHHHhh
Q 026749 167 NYTEVASAVSSFCEY 181 (234)
Q Consensus 167 ~~~~~a~~i~~FAeq 181 (234)
-+-. . +...|..+
T Consensus 74 pL~~-~-~f~r~~G~ 86 (136)
T PRK14644 74 DYET-D-ELENHIGE 86 (136)
T ss_pred CCCH-H-HHHHhCCC
Confidence 5533 2 45555444
No 11
>PHA00432 internal virion protein A
Probab=47.16 E-value=13 Score=31.21 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=23.9
Q ss_pred cHHHHHHHhCceeeEEEEEEeeEEEE
Q 026749 97 NALRLFNALGYKLDHELLRVGFAFHF 122 (234)
Q Consensus 97 ~v~~Fl~~LGfr~dyE~~~~G~~f~~ 122 (234)
...+||+.|||+++=||...|+.|+-
T Consensus 106 ~hir~Lk~lGf~f~~e~~~~g~~F~~ 131 (137)
T PHA00432 106 SHIRFLKSIGAVFHNEFTGDGCQFQL 131 (137)
T ss_pred HHHHHHHHcCeeeecccccCCceeEE
Confidence 57889999999999999999999983
No 12
>PRK14639 hypothetical protein; Provisional
Probab=43.45 E-value=1e+02 Score=25.57 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=47.9
Q ss_pred HHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC---------------CCccCCCceeEEEEEc
Q 026749 98 ALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD---------------EAVPVTPGIQLVEVTA 161 (234)
Q Consensus 98 v~~Fl~~LGfr~-dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d---------------~~~~v~~~s~LVEvSa 161 (234)
....++++||.+ |-||...|-.+. ++|.+-+ ++.++ +.+...++.|..|||.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~------lrV~Id~------~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSS 70 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKI------YRVYITK------EGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSS 70 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcE------EEEEEeC------CCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeC
Confidence 456788999876 556666654333 3444432 22232 2222346689999999
Q ss_pred CCCCCChHHHHHHHHHHHhhhccceeeecCCcccCcccc
Q 026749 162 PASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPT 200 (234)
Q Consensus 162 pa~~e~~~~~a~~i~~FAeqL~PlV~L~K~d~~~~~~~t 200 (234)
|--+--+-. ..+.+.|....- -|.+..-...+|.+-.
T Consensus 71 PGl~RpL~~-~~~f~r~~G~~v-~v~l~~~~~~~G~L~~ 107 (140)
T PRK14639 71 PGLERKLSK-IEHFAKSIGELV-KITTNEKEKFEGKIVS 107 (140)
T ss_pred CCCCCcCCC-HHHHHHhCCCEE-EEEECCCcEEEEEEEE
Confidence 975555422 345555555433 2223234555666544
No 13
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=41.81 E-value=31 Score=25.95 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=11.8
Q ss_pred ccHHHHHHHhCceeeE
Q 026749 96 KNALRLFNALGYKLDH 111 (234)
Q Consensus 96 ~~v~~Fl~~LGfr~dy 111 (234)
.++..-|+.||||.+-
T Consensus 10 ~~l~~eL~~LgYR~v~ 25 (85)
T PF14814_consen 10 AQLEQELELLGYRKVS 25 (85)
T ss_dssp HHHHHHHHHTT-EE-S
T ss_pred HHHHHHHHHcCCCcCC
Confidence 3788899999999983
No 14
>PRK14643 hypothetical protein; Provisional
Probab=40.16 E-value=77 Score=27.10 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=51.5
Q ss_pred cHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC---------------CCccCCCceeEEEEE
Q 026749 97 NALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD---------------EAVPVTPGIQLVEVT 160 (234)
Q Consensus 97 ~v~~Fl~~LGfr~-dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d---------------~~~~v~~~s~LVEvS 160 (234)
-+...++++||.+ |-||.++|-.+. +.|.+-+.. .+.|.++ +.+...++.|.-|||
T Consensus 14 l~~p~~~~~G~eL~die~~~~~~~~~------lrV~Id~~~--~~~ggvtldDC~~vSr~is~~LD~~d~i~~~Y~LEVS 85 (164)
T PRK14643 14 LVNKELEVLNLKVYEINNLKEFENDM------IQILVEDIL--QANKPLDFDILIKANDLVSNKIDQFIKTSEKYLLEIS 85 (164)
T ss_pred HHHHHHHhcCCEEEEEEEEecCCCcE------EEEEEecCC--CcCCCcCHHHHHHHHHHHHHHhCccCCCCCCeEEEec
Confidence 4456788999986 567887775544 233332110 0112122 233355778999999
Q ss_pred cCCCCCChHHHHHHHHHHHhhhccceeeecC----CcccCcccch
Q 026749 161 APASSENYTEVASAVSSFCEYLAPLLHLSKP----GVSTGVVPTA 201 (234)
Q Consensus 161 apa~~e~~~~~a~~i~~FAeqL~PlV~L~K~----d~~~~~~~t~ 201 (234)
.|--+--.-. .++...|..+.- -|.|.++ ...+|++...
T Consensus 86 SPGleRpL~~-~~df~r~~G~~V-~V~l~~~~~g~k~~~G~L~~~ 128 (164)
T PRK14643 86 SSGIEKQIRS-QEELVKALNQWV-YVQLNNEIKKVKEFEGYVTKY 128 (164)
T ss_pred CCCCCCCCCC-HHHHHHhcCCeE-EEEEecccCCceEEEEEEEEE
Confidence 9976555422 445555655533 2333332 3455666543
No 15
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=38.76 E-value=29 Score=27.88 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=34.2
Q ss_pred EEcCCCCCChHHHHHHHHHHHhhhccceeeecCCcccCcccchhHHHHHHhh
Q 026749 159 VTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSLMS 210 (234)
Q Consensus 159 vSapa~~e~~~~~a~~i~~FAeqL~PlV~L~K~d~~~~~~~t~~~~a~~~~~ 210 (234)
+|.|+.+|.+....+.++.+.|. |+| .-|+.-|++++++.+..
T Consensus 7 ~s~~~~~ed~~~~ekl~rk~ken--P~V-------PlG~l~t~aal~~g~y~ 49 (100)
T KOG4431|consen 7 LSLPSYEEDMSQKEKLLRKAKEN--PLV-------PLGCLGTTAALTAGLYK 49 (100)
T ss_pred CCCCCCcchhhHHHHHHHHHHhC--CCe-------eehHHHHHHHHHHHhhh
Confidence 47888888887777888888774 776 44999999999888874
No 16
>PRK14647 hypothetical protein; Provisional
Probab=37.28 E-value=1.5e+02 Score=25.04 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=40.7
Q ss_pred cHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC---------------CCccCCCceeEEEEE
Q 026749 97 NALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD---------------EAVPVTPGIQLVEVT 160 (234)
Q Consensus 97 ~v~~Fl~~LGfr~-dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d---------------~~~~v~~~s~LVEvS 160 (234)
-+...++++||.+ |-||...|-.+. ++|.+-+ ++.++ +.+...++.|..|||
T Consensus 13 ~i~~~~~~~G~~L~dv~~~~~~~~~~------lrV~ID~------~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVS 80 (159)
T PRK14647 13 LAEQVLSSLGLELVELEYKREGREMV------LRLFIDK------EGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVS 80 (159)
T ss_pred HHHHHHHHCCCEEEEEEEEecCCCeE------EEEEEeC------CCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEc
Confidence 4456788999876 556665554322 4444432 22222 233344678999999
Q ss_pred cCCCCCChHHHHHHHHHHHhhh
Q 026749 161 APASSENYTEVASAVSSFCEYL 182 (234)
Q Consensus 161 apa~~e~~~~~a~~i~~FAeqL 182 (234)
.|--+.-.- -..+.+.|..+.
T Consensus 81 SPG~~RpL~-~~~~f~r~~G~~ 101 (159)
T PRK14647 81 SPGLDRPLK-KEADYERYAGRL 101 (159)
T ss_pred CCCCCCcCC-CHHHHHHhCCcE
Confidence 997555542 244455554443
No 17
>COG4293 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.29 E-value=60 Score=28.35 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=40.6
Q ss_pred EEEEeeEEEEeeCceEEEEEEEEeeecccCCCC---------CCccCCCceeEEEEEcCCCCCC-hHHHHHHHHHHHh
Q 026749 113 LLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD---------EAVPVTPGIQLVEVTAPASSEN-YTEVASAVSSFCE 180 (234)
Q Consensus 113 ~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d---------~~~~v~~~s~LVEvSapa~~e~-~~~~a~~i~~FAe 180 (234)
++.+-+.|+ .+.++.|.|-++.++.++-... ++.+++| .=+.+++|.-+|. +.+++.++|..++
T Consensus 110 ~vadrl~~k--p~~~~~vLvlr~~pL~ep~~l~~~aeygGC~SWv~ltp--v~~~~~aPv~sdadl~~~aaevrr~~~ 183 (184)
T COG4293 110 SVADRLDFK--PKHPLAVLVLRAIPLAEPVRLARRAEYGGCTSWVQLTP--VTPTLAAPVHSDADLAEVAAEVRREAV 183 (184)
T ss_pred HHHHHhccC--CCCceEEEEEEecccCCCccccchhhhCCceeeeeccc--cccccCCcccchhHHHHHHHHHHHHhc
Confidence 333333444 4899999999999998887664 2333332 1233468865444 6788888877553
No 18
>TIGR02914 EpsI_fam EpsI family protein. In Methylobacillus sp strain 12S, EpsI is encoded immediately downstream of the multiple-membrane-spanning putative transporter EpsH, and is predicted to be a periplasmic protein involved in, but not required for, expression of the exopolysaccharide methanolan. In a number of other species, protein homologous to EpsI is encoded either next to EpsH or, more often, combined in a fused gene. We have proposed renaming EpsH, or the EpsHI fusion protein, to exosortase, based on its phylogenetic association with the PEP-CTERM proposed protein targeting signal.
Probab=32.67 E-value=61 Score=27.07 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=29.4
Q ss_pred CCceeEEEEEcCCCCCChHHHHHHHHHHHhhhccce
Q 026749 151 TPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLL 186 (234)
Q Consensus 151 ~~~s~LVEvSapa~~e~~~~~a~~i~~FAeqL~PlV 186 (234)
.++..||=||+|..++.+.++.+.+++|...+.|.+
T Consensus 135 ~~dgalvrvst~~~~~~~~~a~~~l~~f~~~~~p~~ 170 (174)
T TIGR02914 135 RPDGALVRVSTPVADSSPEAARAVLRDFLRAMAPVL 170 (174)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHHHHhhhhh
Confidence 456799999988855466677888999999999976
No 19
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=30.36 E-value=1.1e+02 Score=27.88 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=34.4
Q ss_pred cCCC-CCChHHHHHHHHHHHhhhc---c--ceeee-cCCcccCcccchhHHHHHHh
Q 026749 161 APAS-SENYTEVASAVSSFCEYLA---P--LLHLS-KPGVSTGVVPTAAAAAVSLM 209 (234)
Q Consensus 161 apa~-~e~~~~~a~~i~~FAeqL~---P--lV~L~-K~d~~~~~~~t~~~~a~~~~ 209 (234)
.|.+ ++|. +-++++.|.+++. | -++++ .+....|+=|+||.++|.++
T Consensus 54 ~p~~~~~Nl--v~~a~~~~~~~~g~~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~ 107 (302)
T TIGR00191 54 IPTEPTDNL--IYQVAKRFLDQLGIRMPPVKVTLEKNIPLGRGLGSSAAAIVAALA 107 (302)
T ss_pred CCCCccccc--HHHHHHHHHHHcCCCCCCEEEEEEcCCCCcCCCChHHHHHHHHHH
Confidence 4666 5776 6778888888764 3 25554 48999999999998887764
No 20
>PRK14640 hypothetical protein; Provisional
Probab=27.53 E-value=2.5e+02 Score=23.45 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=48.2
Q ss_pred cHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC---------------CCccCCCceeEEEEE
Q 026749 97 NALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD---------------EAVPVTPGIQLVEVT 160 (234)
Q Consensus 97 ~v~~Fl~~LGfr~-dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d---------------~~~~v~~~s~LVEvS 160 (234)
-+...++++||.+ |-||...|-.+ .++|.+-+ ++.++ +.+...++.|.-|||
T Consensus 11 li~p~~~~~G~el~dve~~~~~~~~------~lrV~ID~------~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVS 78 (152)
T PRK14640 11 LLEAPVVALGFELWGIEFIRAGKHS------TLRVYIDG------ENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVS 78 (152)
T ss_pred HHHHHHHhcCCEEEEEEEEecCCCc------EEEEEEEC------CCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEe
Confidence 3455788999986 44555555322 34555532 11122 233344678999999
Q ss_pred cCCCCCChHHHHHHHHHHHhhhccceeee----cCCcccCcccch
Q 026749 161 APASSENYTEVASAVSSFCEYLAPLLHLS----KPGVSTGVVPTA 201 (234)
Q Consensus 161 apa~~e~~~~~a~~i~~FAeqL~PlV~L~----K~d~~~~~~~t~ 201 (234)
.|--+.-.-. ..+.+.|.-.+- -|.|. .-...+|.+..+
T Consensus 79 SPGl~RpL~~-~~~f~r~~G~~v-~V~l~~~~~~~k~~~G~L~~v 121 (152)
T PRK14640 79 SPGLDRPLFK-VAQFEKYVGQEA-AVTLRMATNNRRKFKGVIKAV 121 (152)
T ss_pred CCCCCCcCCC-HHHHHHhCCCeE-EEEEecccCCceEEEEEEEEE
Confidence 9975554422 344555555433 22232 224455666543
No 21
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=27.39 E-value=1.7e+02 Score=19.99 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=24.0
Q ss_pred ccHHHHHHH-hCceeeEEEEEEeeEEEEeeCceEEEEEEEE
Q 026749 96 KNALRLFNA-LGYKLDHELLRVGFAFHFQRGAQITVTVSSV 135 (234)
Q Consensus 96 ~~v~~Fl~~-LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v 135 (234)
+...+|+.+ ||++...+....+..+.+.+.+...|.+...
T Consensus 10 ~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 50 (112)
T cd06587 10 EAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEG 50 (112)
T ss_pred HHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecC
Confidence 377889998 9999988875222222222244555555444
No 22
>PRK01212 homoserine kinase; Provisional
Probab=27.04 E-value=1.2e+02 Score=27.21 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=33.7
Q ss_pred cCCC-CCChHHHHHHHHHHHhhhc--c--ceeeec-CCcccCcccchhHHHHHHh
Q 026749 161 APAS-SENYTEVASAVSSFCEYLA--P--LLHLSK-PGVSTGVVPTAAAAAVSLM 209 (234)
Q Consensus 161 apa~-~e~~~~~a~~i~~FAeqL~--P--lV~L~K-~d~~~~~~~t~~~~a~~~~ 209 (234)
.|.+ ++|. +.++++.|.++.. | -|+++| +....|+=+++|.|||.+.
T Consensus 56 ~p~~~~~Nl--i~~a~~~~~~~~~~~~~~~I~i~k~IP~~~GLGssSa~aaA~l~ 108 (301)
T PRK01212 56 LPLDPEKNL--VYQAALKFLEKLGKPPGLRIELEKNIPLGRGLGSSAASIVAGLV 108 (301)
T ss_pred CCCCCcccc--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcHHHHHHHHHHH
Confidence 3554 4675 6777778877653 3 256655 9999999999988888764
No 23
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.19 E-value=70 Score=22.44 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=21.5
Q ss_pred eEEEeee-ccHHHHHHHhCceeeEEEEEEeeEEE
Q 026749 89 MVESKVS-KNALRLFNALGYKLDHELLRVGFAFH 121 (234)
Q Consensus 89 ~id~~~S-~~v~~Fl~~LGfr~dyE~~~~G~~f~ 121 (234)
.+|..++ .|+..|+++.||+.+.+- .+..|+
T Consensus 31 ~~d~~~s~~~i~~~~~~~G~~~~~~~--~~~~~~ 62 (67)
T cd03421 31 LVDNEVAKENVSRFAESRGYEVSVEE--KGGEFE 62 (67)
T ss_pred EEcChhHHHHHHHHHHHcCCEEEEEe--cCCEEE
Confidence 4555555 599999999999995443 333555
No 24
>PF08608 Wyosine_form: Wyosine base formation; InterPro: IPR013917 The proteins in this entry appear to be important in wyosine base formation in a subset of phenylalanine specific tRNAs. It has been proposed that it participates in converting tRNA(Phe)-m(1)G(37) to tRNA(Phe)-yW []. ; PDB: 2YX0_A 2Z2U_A.
Probab=25.91 E-value=72 Score=23.15 Aligned_cols=32 Identities=38% Similarity=0.343 Sum_probs=20.2
Q ss_pred eEEEEEcCC--C-------CCChHHHHHHHHHHHhhhcccee
Q 026749 155 QLVEVTAPA--S-------SENYTEVASAVSSFCEYLAPLLH 187 (234)
Q Consensus 155 ~LVEvSapa--~-------~e~~~~~a~~i~~FAeqL~PlV~ 187 (234)
..|||-++. | -+|+ +..+++.+||+.|.-+..
T Consensus 5 ~fVEvKa~~~~G~s~~rLt~~nm-p~h~eV~~F~~~l~~~~~ 45 (62)
T PF08608_consen 5 DFVEVKAYMHVGYSRNRLTMGNM-PWHEEVLDFAEELAELLG 45 (62)
T ss_dssp SEEEEEE------------GGGS---HHHHHHHHHHHHTTST
T ss_pred cEEEEecCcccccccCccccCCC-CcHHHHHHHHHHHHhhcC
Confidence 478887766 4 2455 668899999999876543
No 25
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=25.70 E-value=38 Score=27.96 Aligned_cols=16 Identities=31% Similarity=0.717 Sum_probs=13.0
Q ss_pred cChHHHHHHHh-hhcCC
Q 026749 12 QHVEALEILLQ-GICGV 27 (234)
Q Consensus 12 ~~ve~L~~RL~-GLCd~ 27 (234)
..+..|++||| ||||-
T Consensus 56 e~i~~LE~RLRaGlCDR 72 (120)
T PF10482_consen 56 ENIKVLENRLRAGLCDR 72 (120)
T ss_pred HHHHHHHHHHhcccchH
Confidence 35678999997 89997
No 26
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.88 E-value=26 Score=25.20 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=15.7
Q ss_pred CcccCcccchhHHHHHHhh
Q 026749 192 GVSTGVVPTAAAAAVSLMS 210 (234)
Q Consensus 192 d~~~~~~~t~~~~a~~~~~ 210 (234)
++-+|++.|++++|+++++
T Consensus 7 G~l~G~~~t~aa~a~av~~ 25 (54)
T PF11240_consen 7 GFLTGVAATLAAIAGAVFT 25 (54)
T ss_pred hHHHhHHHHHHHHHHHHHH
Confidence 4557899999999998875
No 27
>PRK14646 hypothetical protein; Provisional
Probab=23.55 E-value=3.5e+02 Score=22.80 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=43.5
Q ss_pred cHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCC--CC-------------CCccCCCceeEEEEE
Q 026749 97 NALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHA--TD-------------EAVPVTPGIQLVEVT 160 (234)
Q Consensus 97 ~v~~Fl~~LGfr~-dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~--~d-------------~~~~v~~~s~LVEvS 160 (234)
-+...++++||.+ |-||.+.|-.+. +.|.+-+- ..+. .| +.+...+++|.-|||
T Consensus 12 li~p~~~~~G~eLvdve~~~~~~~~~------LrV~IDk~----~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVS 81 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQTNQNPIV------IKIIIKKT----NGDDISLDDCALFNTPASEEIENSNLLNCSYVLEIS 81 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeE------EEEEEECC----CCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEc
Confidence 4456788999975 667777665544 23333210 0011 11 233455678999999
Q ss_pred cCCCCCChHHHHHHHHHHHhhhc
Q 026749 161 APASSENYTEVASAVSSFCEYLA 183 (234)
Q Consensus 161 apa~~e~~~~~a~~i~~FAeqL~ 183 (234)
.|--+.-.-. .++...|.-+.-
T Consensus 82 SPGldRpL~~-~~df~r~~G~~v 103 (155)
T PRK14646 82 SQGVSDELTS-ERDFKTFKGFPV 103 (155)
T ss_pred CCCCCCcCCC-HHHHHHhCCCEE
Confidence 9975555422 445566665554
No 28
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=22.78 E-value=95 Score=29.07 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=28.0
Q ss_pred eccH-HHHHHHhCce---eeEEEEEEeeEEEEeeCceEEEEEEEE
Q 026749 95 SKNA-LRLFNALGYK---LDHELLRVGFAFHFQRGAQITVTVSSV 135 (234)
Q Consensus 95 S~~v-~~Fl~~LGfr---~dyE~~~~G~~f~~~~~g~ikI~Vs~v 135 (234)
..++ .+|++..|++ .-||++.+||.|.+ .|++ |||.+-
T Consensus 232 g~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~--~~~~-~TvfSa 273 (316)
T cd07417 232 GPDVTKRFLEENNLEYIIRSHEVKDEGYEVEH--DGKC-ITVFSA 273 (316)
T ss_pred CHHHHHHHHHHcCCcEEEECCcccceeEEEec--CCeE-EEEeCC
Confidence 3344 5799999998 68999999999986 5543 555443
No 29
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.44 E-value=3.7e+02 Score=22.91 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=39.8
Q ss_pred ccHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC----------------CCccCCCceeEEE
Q 026749 96 KNALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD----------------EAVPVTPGIQLVE 158 (234)
Q Consensus 96 ~~v~~Fl~~LGfr~-dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d----------------~~~~v~~~s~LVE 158 (234)
+-+-..+..|||.+ |-||.+.|-- ..+.|.+-+- |..+ ...|+. +.|.-|
T Consensus 12 ~liep~~~~lG~ELv~ve~~~~~~~------~~lrI~id~~------g~v~lddC~~vSr~is~~LD~edpi~-~~Y~LE 78 (153)
T COG0779 12 ELIEPVVESLGFELVDVEFVKEGRD------SVLRIYIDKE------GGVTLDDCADVSRAISALLDVEDPIE-GAYFLE 78 (153)
T ss_pred HHHHHhHhhcCcEEEEEEEEEcCCC------cEEEEEeCCC------CCCCHHHHHHHHHHHHHHhccCCccc-ccEEEE
Confidence 34455788999986 5566666622 2233333222 2222 233444 679999
Q ss_pred EEcCCCCCChHHHHHHHHHHHhhh
Q 026749 159 VTAPASSENYTEVASAVSSFCEYL 182 (234)
Q Consensus 159 vSapa~~e~~~~~a~~i~~FAeqL 182 (234)
||.|-.+--+ --.++...|..++
T Consensus 79 VSSPGldRpL-~~~~~f~r~~G~~ 101 (153)
T COG0779 79 VSSPGLDRPL-KTAEHFARFIGEK 101 (153)
T ss_pred eeCCCCCCCc-CCHHHHHHhcCcE
Confidence 9999754443 2233444454443
No 30
>PF08527 PAD_M: Protein-arginine deiminase (PAD) middle domain; InterPro: IPR013733 This entry represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold. ; GO: 0004668 protein-arginine deiminase activity, 0005509 calcium ion binding, 0018101 peptidyl-citrulline biosynthetic process from peptidyl-arginine, 0005737 cytoplasm; PDB: 3B1U_A 3B1T_A 2DW5_A 3APN_A 1WD9_A 2DEX_X 1WD8_A 2DEY_X 2DEW_X 1WDA_A ....
Probab=22.30 E-value=3.3e+02 Score=23.59 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=37.9
Q ss_pred ccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEEeeeccHHHHHHHhCcee
Q 026749 30 DRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKL 109 (234)
Q Consensus 30 e~f~~hE~vfk~~~~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~id~~~S~~v~~Fl~~LGfr~ 109 (234)
.-|..|.+++-.... ..--+|+=+... +...+..+++.+|+. .|..+ .-+|-..
T Consensus 78 ~l~~~~~LvLhvs~~---da~kvrVF~~~~-~~~~~~y~~VLGp~~------------------~sy~v----~~~~g~~ 131 (159)
T PF08527_consen 78 DLFKGYKLVLHVSKS---DAEKVRVFHAQG-GNSSSRYKHVLGPQK------------------LSYEV----PRLGGDR 131 (159)
T ss_dssp TGGGSEEEEEEE-TT---TGGGEEEEEE---------EEEEECTTB------------------SEEEE-------SEEE
T ss_pred hhhcccEEEEEeCHH---HhccceeEeccC-CCCCccCeEEeCCCc------------------ccEEe----ccCCCcc
Confidence 334455555533221 122344444422 235688888888863 11111 1235577
Q ss_pred eEEEEEEeeEEE---EeeCceEEEEEEEE
Q 026749 110 DHELLRVGFAFH---FQRGAQITVTVSSV 135 (234)
Q Consensus 110 dyE~~~~G~~f~---~~~~g~ikI~Vs~v 135 (234)
+..|+.+|..|- | .|-|.+.||=+
T Consensus 132 e~~FyVEgL~FPDa~F--sGLIS~~vSLl 158 (159)
T PF08527_consen 132 EITFYVEGLEFPDADF--SGLISISVSLL 158 (159)
T ss_dssp EEEEEEEESS--BTTB---SEEEEEEEEE
T ss_pred eEEEEEEEcccCCCCC--CeeEEEEEEec
Confidence 888999999998 6 78888888743
No 31
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=22.11 E-value=1.3e+02 Score=31.45 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=46.7
Q ss_pred CccceEE-------eEEE-eeCCCCCCCCeEEEEeeeC--CC----------CCC-ceEEEEecccccCCCccCcceeee
Q 026749 29 RDRLRVH-------EICL-KNNPNLGNVASEVRLLCDL--EQ----------PEP-TWTVKHLGGAMRGAGAEQISVLVR 87 (234)
Q Consensus 29 ~e~f~~h-------E~vf-k~~~~~g~~~~~lRlrr~L--~~----------p~~-~W~lryiG~pe~g~g~~~~pa~VR 87 (234)
+|.+..| ||.+ |++-..++..+.+|.||++ -. +|+ -| +.|+|++++ .+.+|+.+
T Consensus 89 ~E~~y~~~~~G~~lEi~~~k~G~~p~~e~~a~h~RrRyRL~~~~~p~pn~P~~DpsLw-iVHY~~a~~---~d~iP~~~- 163 (669)
T PF08549_consen 89 PEQAYTHEVNGYTLEIYEHKSGYHPPGEQYASHSRRRYRLVPGKVPNPNAPPPDPSLW-IVHYGPAPP---QDRIPANR- 163 (669)
T ss_pred hhheeeecCCCeEEEEEEeecCcCCCCCchhheeeeeeEecCCCCCCCCCCCCCCcEE-EEEecCCCc---cccCcccc-
Confidence 4665555 4444 7774433467788888774 21 233 48 555699987 66777754
Q ss_pred eeEEE-eeeccHH---HHHHHhCceeeEEEEEEeeEEE
Q 026749 88 SMVES-KVSKNAL---RLFNALGYKLDHELLRVGFAFH 121 (234)
Q Consensus 88 ~~id~-~~S~~v~---~Fl~~LGfr~dyE~~~~G~~f~ 121 (234)
|-+ .-.++++ .||+..|= .++|.|+-+
T Consensus 164 --I~~~p~~q~~l~qR~~lq~~Gq-----l~rKeFmLh 194 (669)
T PF08549_consen 164 --IPVPPQVQNILAQRRFLQSQGQ-----LARKEFMLH 194 (669)
T ss_pred --cCCCHHHHHHHHhhhhhhhccc-----hhhhhhhhh
Confidence 221 1123333 57888884 445555554
No 32
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=21.96 E-value=3.3e+02 Score=20.00 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=16.9
Q ss_pred EEEeeec--cHHHHHHHhCceeeEE
Q 026749 90 VESKVSK--NALRLFNALGYKLDHE 112 (234)
Q Consensus 90 id~~~S~--~v~~Fl~~LGfr~dyE 112 (234)
|...|++ ...+|++.|||+..++
T Consensus 4 i~l~V~D~~~a~~FY~~LGf~~~~~ 28 (122)
T cd07235 4 VGIVVADMAKSLDFYRRLGFDFPEE 28 (122)
T ss_pred EEEEeccHHHHHHHHHHhCceecCC
Confidence 3445665 7889999999987554
No 33
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.56 E-value=3.5e+02 Score=20.13 Aligned_cols=26 Identities=15% Similarity=0.494 Sum_probs=18.7
Q ss_pred eEEEeeec--cHHHHHHHhCceeeEEEE
Q 026749 89 MVESKVSK--NALRLFNALGYKLDHELL 114 (234)
Q Consensus 89 ~id~~~S~--~v~~Fl~~LGfr~dyE~~ 114 (234)
.+...|++ .+.+|++.|||+...++-
T Consensus 3 ~v~l~V~Dl~~s~~FY~~lGf~~~~~~~ 30 (124)
T cd09012 3 FINLPVKDLEKSTAFYTALGFEFNPQFS 30 (124)
T ss_pred EEEeecCCHHHHHHHHHHCCCEEccccC
Confidence 34455665 788999999998765443
No 34
>PTZ00167 RNA polymerase subunit 8c; Provisional
Probab=20.58 E-value=1e+02 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=19.8
Q ss_pred eeeEEEEEEeeEEEEee--CceEEEEEE
Q 026749 108 KLDHELLRVGFAFHFQR--GAQITVTVS 133 (234)
Q Consensus 108 r~dyE~~~~G~~f~~~~--~g~ikI~Vs 133 (234)
.-+|||+--|..|+|.. .++++|.+|
T Consensus 82 ad~ydYVM~GkvYk~ee~~s~~~~vy~S 109 (144)
T PTZ00167 82 MDQYEYVMYGKIFKFEEKSSERRTLYAS 109 (144)
T ss_pred cccCCEEcceEEEEeeecCCCcEEEEEE
Confidence 36999999999999943 456666655
No 35
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=20.49 E-value=90 Score=27.53 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=33.4
Q ss_pred EEEecccccCCCc---------cCcceeeeeeEEEeeeccHHHHHHHhCceee
Q 026749 67 VKHLGGAMRGAGA---------EQISVLVRSMVESKVSKNALRLFNALGYKLD 110 (234)
Q Consensus 67 lryiG~pe~g~g~---------~~~pa~VR~~id~~~S~~v~~Fl~~LGfr~d 110 (234)
.+-+|.||.|+-+ ..-.--+|+++.++.|.++.+-++++||+.-
T Consensus 61 ~~a~g~pefGaS~H~Ar~lL~~~~~~p~iraa~NIrY~~~~v~~~~~~G~~v~ 113 (181)
T COG1992 61 PYAVGPPEFGASSHTARVLLTVMKHDPDIRAAINIRYSEEVVEALKDLGLAVS 113 (181)
T ss_pred EeecCCCCCCchHHHHHHHHHHHhhCCCceEEeeecccHHHHHHHHhcCceEE
Confidence 5667889887321 1122348999999999999999999999853
No 36
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=20.40 E-value=1.7e+02 Score=27.54 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=37.3
Q ss_pred cCCCCCChHHHHHHHHHHHhhhcc-c---eeee-cCCcccCcccchhHHHHHHhh
Q 026749 161 APASSENYTEVASAVSSFCEYLAP-L---LHLS-KPGVSTGVVPTAAAAAVSLMS 210 (234)
Q Consensus 161 apa~~e~~~~~a~~i~~FAeqL~P-l---V~L~-K~d~~~~~~~t~~~~a~~~~~ 210 (234)
.|.+++|+ +-..+..|++.+.. . ++++ .+..+-|+=|+||+++|.++.
T Consensus 53 iP~~~~n~--~~~~~~~~~~~~~~~~~~~i~i~k~IP~~rGLGSSaAsiVAal~a 105 (299)
T COG0083 53 IPLDPENL--VYQAALKFLEALGIEAGVKIRIEKGIPLGRGLGSSAASIVAALAA 105 (299)
T ss_pred CCCCccee--HHHHHHHHHHHhCCCccEEEEEEcCCCCCCCCcHHHHHHHHHHHH
Confidence 78888986 78899999999943 3 2333 467777888999999998765
No 37
>PF11984 DUF3485: Protein of unknown function (DUF3485); InterPro: IPR014263 This entry contains EpsI from Methylobacillus sp. 12S. EpsI is encoded immediately downstream of the multiple-membrane-spanning putative transporter EpsH, and is predicted to be a periplasmic protein involved in, but not required for, expression of the exopolysaccharide methanolan. In a number of other species, protein homologues to EpsI are encoded either next to epsH or, more often, combined in a fused gene.
Probab=20.30 E-value=1.4e+02 Score=25.12 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=28.3
Q ss_pred CCceeEEEEEcCCCCCChHHHHHHHHHHHhhhccce
Q 026749 151 TPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLL 186 (234)
Q Consensus 151 ~~~s~LVEvSapa~~e~~~~~a~~i~~FAeqL~PlV 186 (234)
..+..||=||+|- +++.+++.+.+.+|+.++.|.+
T Consensus 167 ~~d~alvrvst~~-~~~~~~a~~~l~~f~~~~~~~l 201 (206)
T PF11984_consen 167 RDDGALVRVSTPV-DGDEEQARARLQDFLRDLLPAL 201 (206)
T ss_pred CCCcEEEEEEEeC-CCChHHHHHHHHHHHHHHHHhh
Confidence 3356899999885 5555688999999999999876
Done!