Query 026749
Match_columns 234
No_of_seqs 76 out of 78
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 21:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c0t_A Mediator of RNA polymer 100.0 5.4E-49 1.8E-53 341.3 21.2 182 1-192 2-206 (207)
2 2hzm_B RNA polymerase II media 100.0 1.9E-28 6.5E-33 223.3 20.0 185 1-194 2-293 (317)
3 1yem_A Hypothetical protein; s 97.1 0.053 1.8E-06 44.9 17.6 137 13-183 18-156 (179)
4 3ghx_A Adenylate cyclase CYAB; 96.4 0.32 1.1E-05 40.2 17.7 138 13-182 19-161 (179)
5 3n10_A Adenylate cyclase 2; CY 96.2 0.27 9.2E-06 39.9 15.3 138 13-182 19-161 (179)
6 2een_A Hypothetical protein PH 96.2 0.31 1.1E-05 39.7 15.6 144 14-183 11-161 (183)
7 2aca_A Putative adenylate cycl 95.2 0.53 1.8E-05 38.9 13.6 137 13-182 21-163 (189)
8 2dc4_A PH1012 protein, 165AA l 94.9 1.1 3.9E-05 35.6 17.9 137 13-183 10-148 (165)
9 2w56_A VC0508; unknown functio 50.9 18 0.0006 29.5 4.4 26 46-75 56-88 (147)
10 2v1l_A Hypothetical protein; p 49.6 20 0.00068 29.3 4.6 26 46-75 56-88 (148)
11 1qsm_A HPA2 histone acetyltran 35.3 16 0.00055 25.7 1.7 17 97-113 130-146 (152)
12 2cu5_A Conserved hypothetical 29.3 11 0.00037 30.1 -0.1 14 211-224 30-43 (129)
13 1z4e_A Transcriptional regulat 26.1 90 0.0031 22.3 4.5 24 90-113 124-148 (153)
14 1ecs_A Bleomycin resistance pr 26.0 1.3E+02 0.0045 21.2 5.4 24 89-112 6-31 (126)
15 4f78_A D,D-dipeptidase/D,D-car 25.6 22 0.00075 31.2 1.2 13 62-74 164-176 (255)
16 3pyf_A 4-diphosphocytidyl-2-C- 23.3 1.1E+02 0.0039 26.4 5.4 47 161-209 64-115 (306)
17 1ib8_A Conserved protein SP14. 22.9 2.5E+02 0.0085 22.5 7.0 32 150-182 75-106 (164)
18 1sei_A Ribosomal protein S8; p 22.0 1.2E+02 0.0042 23.7 4.8 26 90-115 24-52 (130)
19 1a1d_A RNA polymerase; RPB8, O 21.1 83 0.0028 25.6 3.7 25 109-133 91-117 (146)
20 2dgv_A HnRNP M, heterogeneous 20.7 85 0.0029 21.2 3.3 43 79-121 6-53 (92)
21 3bhd_A Thtpase, thiamine triph 20.2 3.7E+02 0.013 22.3 12.4 143 17-183 37-202 (234)
No 1
>3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-49 Score=341.33 Aligned_cols=182 Identities=13% Similarity=0.182 Sum_probs=157.1
Q ss_pred CeeEEEEEEeccChHHHHHHHhhhcCCCCccceEEeEEEeeCCCC----CCCCeEEEEeeeC---CC------CCCceEE
Q 026749 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNL----GNVASEVRLLCDL---EQ------PEPTWTV 67 (234)
Q Consensus 1 ~Ec~LqGsi~~~~ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~~~----g~~~~~lRlrr~L---~~------p~~~W~l 67 (234)
|||+|||+|.+++++.|+|||+||| -.|++|+|||||||..+.. +.+.+.+|||+.+ ++ ++++|++
T Consensus 2 qE~lL~gsV~~~~~~~ll~~L~GL~-m~P~~~le~~mvfk~~~~P~~~~r~ggsy~rv~~~v~~~~~~d~~~~~~~~W~l 80 (207)
T 3c0t_A 2 QELYLLGVVPSRRFEAVVNSLSKTL-DGPKTILEFWVVYRPKDVPPNLPRQPDSWLRLCSNIESHDETDTEWSKNTQWSM 80 (207)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHS-EEEEEEEEEEEEEEEC------CCCGGGSEEEEEEGGGSCTTCTTGGGSSCEEE
T ss_pred ceEEEEeecchhHHHHHHHHHhhcc-cCCeeeeEEEEEeccCCCCcccCCCCCceEEEEeecccccccccccccCCceEE
Confidence 6999999999999999999999999 6699999999999743200 1112239999999 77 4679999
Q ss_pred EEecccccCCCccCcceeeeeeEE-EeeeccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCC
Q 026749 68 KHLGGAMRGAGAEQISVLVRSMVE-SKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDE 146 (234)
Q Consensus 68 ryiG~pe~g~g~~~~pa~VR~~id-~~~S~~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~ 146 (234)
||+|+||. ++++||++|++++ ..+|+|+++|+++|||++||||+.+||+|+ +|+|||++++|++ ++.++.
T Consensus 81 r~~g~pEa---~~~~~~~~R~~~~a~~~sgdv~~fl~~lG~~~~~EYv~~G~~f~---~g~~kI~l~ril~---~~~p~~ 151 (207)
T 3c0t_A 81 YLEGNSEP---KREDKCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLEYF---FFDTTVRIYQTLI---PSQQRS 151 (207)
T ss_dssp EEECCCCS---SCTTSCEEEEEEEEEECSSCHHHHHHHTTEEEEEEEEEEEEEEE---ETTEEEEEEEEEE---ESSTTC
T ss_pred EEcCCCcC---CCcCceEEEEeecccccCCCHHHHHHHhCcceEEEEEEeeeEEE---eCCEEEEEEeeec---CCCCCc
Confidence 99999996 7889999999999 588999999999999999999999999999 6999999999999 555554
Q ss_pred Cc----cC-CCceeEEEEE--cCCCCCC--hHHHHHHHHHHHhhhccceeeecCC
Q 026749 147 AV----PV-TPGIQLVEVT--APASSEN--YTEVASAVSSFCEYLAPLLHLSKPG 192 (234)
Q Consensus 147 ~~----~v-~~~s~LVEvS--apa~~e~--~~~~a~~i~~FAeqL~PlV~L~K~d 192 (234)
.+ |+ .++|||||+| +|+++|. +..++++|+.|||||+|+|+|||+|
T Consensus 152 ~~pp~~pLd~S~sylle~sv~v~d~~d~~~m~~~~~~L~~f~eqLk~~V~Lek~~ 206 (207)
T 3c0t_A 152 IKPPFHPMNEEQPWILHVYTHVADASNQVAMAKAEANLTKVKTLLSAFCDLKNVR 206 (207)
T ss_dssp CSSCEEESSTTCCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHHTTTCCCBCCC
T ss_pred cCCCccccccCcceEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 44 33 2568999997 9998888 3347999999999999999999998
No 2
>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 2hzs_B 3rj1_E
Probab=99.96 E-value=1.9e-28 Score=223.25 Aligned_cols=185 Identities=16% Similarity=0.234 Sum_probs=146.3
Q ss_pred CeeEEEEEEeccChHHHHHHHhhhcCCCCccceEEeEEEeeCCC--CC--------CCCeEEEEeeeC------------
Q 026749 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPN--LG--------NVASEVRLLCDL------------ 58 (234)
Q Consensus 1 ~Ec~LqGsi~~~~ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~~--~g--------~~~~~lRlrr~L------------ 58 (234)
|+.+|+|+|.+...+.+++-|+.|||+.|..|..+-+|+|-.|. .| ..+.-+|+...+
T Consensus 2 qqLsL~s~I~~~~y~~~i~tl~~ltG~~P~~~~~~~~v~kP~p~~~~~~vn~~nqlvE~~~~k~~~~~p~~~~~~~~~~~ 81 (317)
T 2hzm_B 2 QQLSLFGSIGDDGYDLLISTLTTISGNPPLLYNSLCTVWKPNPSYDVENVNSRNQLVEPNRIKLSKEVPFSYLIDETMMD 81 (317)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHCSCCEEEEEEEEEEEECGGGCCC----------CCCEEEEECCCGGGTCCC----
T ss_pred ceEEEEEecCcccHHHHHHHHHHhcCCCCeeeeeeEEEecCCCCCCccccccccchhhhhheeecccccccccccccccc
Confidence 57899999999999999999999999999999999999964331 02 222333333331
Q ss_pred ---------------------------------------------------CC------------------------CCC
Q 026749 59 ---------------------------------------------------EQ------------------------PEP 63 (234)
Q Consensus 59 ---------------------------------------------------~~------------------------p~~ 63 (234)
+. ..+
T Consensus 82 ~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 161 (317)
T 2hzm_B 82 KPLNFRILKSFTNDKIPLNYAMTRNILHNTVPQVTNFNSTNEDQNNSKHTEDTVNESRNSDDIIDVDMDASPAPSNESCS 161 (317)
T ss_dssp CCCSGGGGGGC-----------------------------------------------------------------CCCC
T ss_pred cccccchhhhhhccccchhHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccCcccccCC
Confidence 00 136
Q ss_pred ceEEEEecccccCCCccCcceeeeeeEEE--eeec----cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEee
Q 026749 64 TWTVKHLGGAMRGAGAEQISVLVRSMVES--KVSK----NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNK 137 (234)
Q Consensus 64 ~W~lryiG~pe~g~g~~~~pa~VR~~id~--~~S~----~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k 137 (234)
+|+|||.|.||. ++++++++|+++++ .+|+ ++++|+++|||+++|||+.+||+|.+ ||.|+|+++||++
T Consensus 162 pW~Lr~~DiPEA---gknr~Vt~R~i~eS~l~~s~~~~~svl~FL~eLGY~fd~EYV~kG~~F~~--kgdI~I~L~KI~~ 236 (317)
T 2hzm_B 162 PWSLQISDIPAA---GNNRSVSMQTIAETIILSSAGKNSSVSSLMNGLGYVFEFQYLTIGVKFFM--KHGLILELQKIWQ 236 (317)
T ss_dssp CEEEEEEEC---------CCSEEEEEEEEEEEEEEETTCSHHHHHHHTTEEEEEEEEEEEEEEEC--GGGCEEEEEEEEE
T ss_pred ceEEEecCCCCC---CCCCceEEEEEEeeeeecCCCCcccHHHHHHHcCCceeEEEEEEEEEEEE--cCCEEEEEEEEEe
Confidence 799999999996 47899999999997 4588 99999999999999999999999996 7999999999999
Q ss_pred ecccCCCCCCccCCCceeEEEEE--cCCCCCC--hHHHHHHHHHHHhhhccceeeecCCcc
Q 026749 138 MLKLHATDEAVPVTPGIQLVEVT--APASSEN--YTEVASAVSSFCEYLAPLLHLSKPGVS 194 (234)
Q Consensus 138 ~~~~g~~d~~~~v~~~s~LVEvS--apa~~e~--~~~~a~~i~~FAeqL~PlV~L~K~d~~ 194 (234)
+...+ .+ ...+++||||+| +|.+.|. +..++++|+.|+|||+|+|+||++|..
T Consensus 237 ~~~~~-~~---~d~SgsylLkasV~V~~~tD~d~i~~as~eL~~LkeqLkglVeLE~pDR~ 293 (317)
T 2hzm_B 237 IEEAG-NS---QITSGGFLLKAYINVSRGTDIDRINYTETVLMNLKKELQGYIELSVPDRQ 293 (317)
T ss_dssp EETTE-EE---ETTTTEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTTCCCBCCCHH
T ss_pred eCCCC-CC---CCCCCceEEEEEEEecCCCCHHHHHHHHHHHHHHHHHhhhhcceeccchh
Confidence 97332 21 256779999997 8877666 556899999999999999999999963
No 3
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=97.12 E-value=0.053 Score=44.95 Aligned_cols=137 Identities=12% Similarity=0.168 Sum_probs=95.5
Q ss_pred ChHHHHHHHhhhcCCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEE
Q 026749 13 HVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES 92 (234)
Q Consensus 13 ~ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~id~ 92 (234)
+++++..+|.-+......++...-+-|-++ + ...||+|.. ..+..|.+-|=|.. .| . .-.|.-+++
T Consensus 18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p-~----~~~LRIR~~--~~~~~~~lT~K~p~-~g--~----~k~~~E~e~ 83 (179)
T 1yem_A 18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVP-R----PKLLRIRGV--HNLKKYYLTFKEIL-DE--N----NEEFYEVEF 83 (179)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEEEEEEECCC-T----TEEEEEEEE--TTTTEEEEEEEEEC-SS--S----SCEEEEEEE
T ss_pred CHHHHHHHHHhcCCccCcceEEEEEEEcCC-C----CCEEEEEEE--cCCCeEEEEEeccC-CC--C----ccceeEEEE
Confidence 689999999988765445555555556543 1 289999975 22457999988766 32 2 226666667
Q ss_pred eeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCceeEEEEEcCCCCCChHH
Q 026749 93 KVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTE 170 (234)
Q Consensus 93 ~~S~--~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVEvSapa~~e~~~~ 170 (234)
.+++ .+..+|..|||.....+-+.-+.|.+ +...|.+..+.. .| ..|||=.... ..++
T Consensus 84 ~v~d~~~~~~iL~~LG~~~~~~i~K~R~~~~~---~~~~i~lD~~~~--------------lG-~f~EIE~~~~--~~e~ 143 (179)
T 1yem_A 84 EIGDFEKAVEVFKRLGFKIQATIKKKRWVYKL---NGVTLEVNRVEG--------------IG-DFVDIEVISD--SPEE 143 (179)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEEEEEEEEEE---TTEEEEEEEETT--------------TE-EEEEEEEECS--CHHH
T ss_pred EeCCHHHHHHHHHHCCCcEEEEEEEEEEEEEE---CCEEEEEEecCC--------------CC-CEEEEEEecC--ChHH
Confidence 6665 57778999999999999999999996 567887777532 24 5667743332 3445
Q ss_pred HHHHHHHHHhhhc
Q 026749 171 VASAVSSFCEYLA 183 (234)
Q Consensus 171 ~a~~i~~FAeqL~ 183 (234)
+...+..|+++|-
T Consensus 144 ~~~~~~~ll~~LG 156 (179)
T 1yem_A 144 AKEKIWEVAKMLG 156 (179)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 6778888888874
No 4
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=96.41 E-value=0.32 Score=40.15 Aligned_cols=138 Identities=13% Similarity=0.195 Sum_probs=87.4
Q ss_pred ChHHHHHHHhhhcCCC-CccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 026749 13 HVEALEILLQGICGVH-RDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (234)
Q Consensus 13 ~ve~L~~RL~GLCd~~-~e~f~~hE~vfk~~~~-~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~i 90 (234)
+.+++.+||..+.... ..+...+-+.|-++.. .-.....||+|+.-+....-|+ |=|... +. +.
T Consensus 19 d~~~~~~~L~~~g~~~~~~~~~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t--~Kgp~~----~~--------~~ 84 (179)
T 3ghx_A 19 DLTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWI--VKGPGA----ER--------CE 84 (179)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEE--EECSSS----SB--------EE
T ss_pred CHHHHHHHHHhcCCccccCcceEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEE--EecCCC----Cc--------EE
Confidence 6789999998764331 1222344555654321 1234678999987321112355 434432 11 23
Q ss_pred EEeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCceeEEEEEcCCC-CCC
Q 026749 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPAS-SEN 167 (234)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVEvSapa~-~e~ 167 (234)
++.+++ .+...|..|||.....+-+.-..|.+ +..+|++..+-.+ | ..|||=..+. ++.
T Consensus 85 e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~y~~---~~~~i~LD~v~gl--------------G-~f~EIE~~~~d~~~ 146 (179)
T 3ghx_A 85 ASNIEDVSKVQSMLATLGYHPAFTIEKQRSIYFV---GKFHITVDHLTGL--------------G-DFAEIAIMTDDATE 146 (179)
T ss_dssp EEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---TTEEEEEEEETTT--------------E-EEEEEEEEESCGGG
T ss_pred EEEcCCHHHHHHHHHHCCCcEEEEEEEEEEEEEE---CCEEEEEEccCCC--------------c-cEEEEEEEcCChhh
Confidence 555554 77789999999999999999999996 7888888776532 3 5668843322 344
Q ss_pred hHHHHHHHHHHHhhh
Q 026749 168 YTEVASAVSSFCEYL 182 (234)
Q Consensus 168 ~~~~a~~i~~FAeqL 182 (234)
...+.+.+..++++|
T Consensus 147 ~~~~~~~i~~l~~~L 161 (179)
T 3ghx_A 147 LDKLKAECRDFANTF 161 (179)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 556667788888776
No 5
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=96.19 E-value=0.27 Score=39.94 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=89.9
Q ss_pred ChHHHHHHHhhhcCCC-CccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 026749 13 HVEALEILLQGICGVH-RDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (234)
Q Consensus 13 ~ve~L~~RL~GLCd~~-~e~f~~hE~vfk~~~-~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~i 90 (234)
+.+++..+|..+.... ....+.+-+.|-++. ........||+|+.-+ +..|++.|=| |. +|...
T Consensus 19 d~~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lRiR~~~~--~~~~~lt~kg-~~-----------~~~e~ 84 (179)
T 3n10_A 19 DLTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNP--SGIRLWIVKG-PG-----------AERCE 84 (179)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEET--TCCEEEEEEC-SS-----------SSBEE
T ss_pred CHHHHHHHHHhcCCccccceEEEEEEEEeCCChhHHhCCceEEEEecCC--CceEEEEEcC-Cc-----------cccce
Confidence 5788889998765432 233344455565431 1234578899987633 3467777743 32 34556
Q ss_pred EEeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCceeEEEEEcCC-CCCC
Q 026749 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPA-SSEN 167 (234)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVEvSapa-~~e~ 167 (234)
++.+++ .+..++..+||+.-..+-+.-..|.+ +.+.|++..+..+ | ..+||=... ..+.
T Consensus 85 e~~v~~~~~~~~~l~~lg~~~~~~~~k~R~~~~~---~~~~v~lD~v~~l--------------G-~f~EiE~e~~~~~~ 146 (179)
T 3n10_A 85 ASNIEDVSKVQSMLATLGYHPAFTIEKQRSIYFV---GKFHITVDHLTGL--------------G-DFAEIAIMTDDATE 146 (179)
T ss_dssp EEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---TTEEEEEEEETTT--------------E-EEEEEEEEESCGGG
T ss_pred eeccCCHHHHHHHHHhCCCeEEEEEEEEEEEEEE---CCEEEEEEeccCC--------------C-cEEEEEEEeCCCcc
Confidence 666664 78889999999999999999999995 7788887765321 2 467874322 2334
Q ss_pred hHHHHHHHHHHHhhh
Q 026749 168 YTEVASAVSSFCEYL 182 (234)
Q Consensus 168 ~~~~a~~i~~FAeqL 182 (234)
+.++.+.+..++++|
T Consensus 147 ~~~~~~~~~~l~~~L 161 (179)
T 3n10_A 147 LDKLKAECRDFANTF 161 (179)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 555667788888876
No 6
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.31 Score=39.71 Aligned_cols=144 Identities=11% Similarity=0.152 Sum_probs=91.1
Q ss_pred hHHHHHHHhhhcCCCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEE
Q 026749 14 VEALEILLQGICGVHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES 92 (234)
Q Consensus 14 ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~~-~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~id~ 92 (234)
.+++.++|.. ......++..+-+-|-++.. .......||+|+.-...+..|.+.|=|....| + .-.|.-+++
T Consensus 11 ~~~~~~~L~~-~~~~~~~~~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~-~-----~~~r~E~e~ 83 (183)
T 2een_A 11 NDEIFEKVRE-TFEFMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDE-K-----SKTRLEIEV 83 (183)
T ss_dssp CHHHHHHHHT-TSEEEEEEEEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCT-T-----SCCEEEEEE
T ss_pred CHHHHHHHHh-cCccCccEEEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCC-C-----ceeEEEEEE
Confidence 4567788876 33323444555555654321 11245799999532222457999997754421 1 124777777
Q ss_pred eee-c--cHHHHHHHhCceeeEEEEEEeeEEEEeeCc-eEEEEEEEEeeecccCCCCCCccCCCceeEEEEE--cCCCCC
Q 026749 93 KVS-K--NALRLFNALGYKLDHELLRVGFAFHFQRGA-QITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSE 166 (234)
Q Consensus 93 ~~S-~--~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g-~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVEvS--apa~~e 166 (234)
.++ + .+...|..|||..-+.+-+.-..|.+ + .+.|.+..+.. -| ..|||= +.. .+
T Consensus 84 ~v~~~~~~~~~~L~~lgl~~~~~~~k~R~~~~~---~~~~~v~lD~~~~--------------lg-~f~EiE~e~~~-~~ 144 (183)
T 2een_A 84 EIQEDVDKYFELLDRLGFKEVLKVVKTREKYYV---EKGVTITLDEVEG--------------LG-KFIEIETLVKE-KD 144 (183)
T ss_dssp EECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---ETTEEEEEEEETT--------------TE-EEEEEEEECSS-GG
T ss_pred eecCCHHHHHHHHHHCCCeEEEEEEEEEEEEEe---CCCEEEEEEeecC--------------Ce-eEEEEEEecCC-cc
Confidence 776 4 67889999999999999999999997 4 67888777531 13 244774 333 22
Q ss_pred ChHHHHHHHHHHHhhhc
Q 026749 167 NYTEVASAVSSFCEYLA 183 (234)
Q Consensus 167 ~~~~~a~~i~~FAeqL~ 183 (234)
...++...+..++++|-
T Consensus 145 ~~~~~~~~~~~l~~~lg 161 (183)
T 2een_A 145 EIPEAVEKLEKILRELG 161 (183)
T ss_dssp GHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcC
Confidence 44456667777777764
No 7
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=95.22 E-value=0.53 Score=38.85 Aligned_cols=137 Identities=12% Similarity=0.190 Sum_probs=86.2
Q ss_pred ChHHHHHHHhhhcCC-CCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 026749 13 HVEALEILLQGICGV-HRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (234)
Q Consensus 13 ~ve~L~~RL~GLCd~-~~e~f~~hE~vfk~~~~-~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~i 90 (234)
+.+++..+|..+... ...++...-+-|-++.. .......||+|+.-+.....|+++ |+... . +.
T Consensus 21 d~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~K--gp~~~---~---------~~ 86 (189)
T 2aca_A 21 NHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVK--GPEAD---R---------CE 86 (189)
T ss_dssp CHHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEE--CSSTT---B---------EE
T ss_pred CHHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEc--CCCcC---c---------eE
Confidence 678999999987662 23455555666654321 112467899997633112346654 44332 1 11
Q ss_pred EEeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCceeEEEEE--cCCCCC
Q 026749 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSE 166 (234)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVEvS--apa~~e 166 (234)
++.+.+ .+...|..|||+.-+.+-+.-..|.+ +.+.|++..+..+ | ..+||= +..++
T Consensus 87 e~~v~d~~~~~~~L~~lgl~~~~~~~k~R~~~~~---~~~~v~lD~~~~l--------------g-~f~EiE~e~~~~~- 147 (189)
T 2aca_A 87 ATNITKLDSAQSMLENMGYEVIQCSKKIRSIFFV---GEFHITLDFLDGF--------------G-HFAEFAIMTDDET- 147 (189)
T ss_dssp EEEBSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---TTEEEEEEEETTT--------------E-EEEEEEEEESCSG-
T ss_pred EEecCCHHHHHHHHHHcCCcEEEEEEEEEEEEEE---CCEEEEEEcccCC--------------e-eEEEEEEEcCCcc-
Confidence 333333 67789999999999999999999996 6788888876421 2 446663 44322
Q ss_pred ChHHHHHHHHHHHhhh
Q 026749 167 NYTEVASAVSSFCEYL 182 (234)
Q Consensus 167 ~~~~~a~~i~~FAeqL 182 (234)
....+-+.+..|+++|
T Consensus 148 ~~~~~~~~~~~l~~~l 163 (189)
T 2aca_A 148 ALARYRERLVALAQQF 163 (189)
T ss_dssp GGTTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHc
Confidence 2334567888888888
No 8
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=94.89 E-value=1.1 Score=35.59 Aligned_cols=137 Identities=14% Similarity=0.168 Sum_probs=91.0
Q ss_pred ChHHHHHHHhhhcCCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEE
Q 026749 13 HVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES 92 (234)
Q Consensus 13 ~ve~L~~RL~GLCd~~~e~f~~hE~vfk~~~~~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~VR~~id~ 92 (234)
+.+++..+|..+......++..+-.-|-++. ...||+|.. ..+..|.+-|=|.. .| +...|.-.++
T Consensus 10 ~~~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~-----~~~LRiR~~--~~~~~~~lT~K~~~-~g------~~~~~~E~e~ 75 (165)
T 2dc4_A 10 NFEDIKRKIEGLGAKFFGIEEQEDVYFELPS-----PKLLRVRKI--NNTGKSYITYKEIL-DK------RNEEFYELEF 75 (165)
T ss_dssp CHHHHHHHHHHHTCEEEEEEEEEEEEECCST-----TEEEEEEEE--TTTTEEEEEEEEEC-SS------SSCEEEEEEE
T ss_pred CHHHHHHHHHhcCCCcCcceeEEEEEEcCCC-----CCEEEEEEE--cCCCEEEEEEeCcC-CC------CceeeeEEEE
Confidence 3567777777655432334444445565431 289999974 22467999887755 32 2347777777
Q ss_pred eeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCccCCCceeEEEEEcCCCCCChHH
Q 026749 93 KVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTE 170 (234)
Q Consensus 93 ~~S~--~v~~Fl~~LGfr~dyE~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~LVEvSapa~~e~~~~ 170 (234)
.+.+ .+...|+.|||..-+.+-+.-+.|.+ +.+.|.+-.+.. .| ..+||=.+.. ....
T Consensus 76 ~i~~~~~~~~~L~~lg~~~~~~~~k~R~~~~~---~~~~i~lD~~~~--------------~g-~~~EiE~~~~--~~~~ 135 (165)
T 2dc4_A 76 EVQDPEGAIELFKRLGFKVQGVVKKRRWIYKL---NNVTFELNRVEK--------------AG-DFLDIEVITS--NPEE 135 (165)
T ss_dssp EBSCHHHHHHHHHHTTCCEEEEEEEEEEEEEE---TTEEEEEEEETT--------------TE-EEEEEEECCS--CHHH
T ss_pred EcCCHHHHHHHHHHcCCcEEEEEEEEEEEEEE---CCEEEEEEecCC--------------Cc-cEEEEEEEcC--CHHH
Confidence 7755 56778899999999999998888986 567877776531 24 6678865543 4445
Q ss_pred HHHHHHHHHhhhc
Q 026749 171 VASAVSSFCEYLA 183 (234)
Q Consensus 171 ~a~~i~~FAeqL~ 183 (234)
+...+..|+++|-
T Consensus 136 ~~~~~~~l~~~lg 148 (165)
T 2dc4_A 136 GKKIIWDVARRLG 148 (165)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 6778888888874
No 9
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=50.93 E-value=18 Score=29.50 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=17.8
Q ss_pred CCCCeEEEEe-eeCCCCCCceEEEE------eccccc
Q 026749 46 GNVASEVRLL-CDLEQPEPTWTVKH------LGGAMR 75 (234)
Q Consensus 46 g~~~~~lRlr-r~L~~p~~~W~lry------iG~pe~ 75 (234)
|=-|||+|+. +. +..|++.| +|.|.+
T Consensus 56 GfHPVEIrl~~~~----~~~W~i~YITDFsY~G~~~p 88 (147)
T 2w56_A 56 GFHPVEMAICQTS----TGEWSIEYITDFAYMGNYYP 88 (147)
T ss_dssp CSCCEEEEEEECT----TSCEEEEEEEEEEEC--CCC
T ss_pred CcCCEEEEEEecC----CCcEEEEEEEeecccCCCCc
Confidence 5579999999 43 67899975 566543
No 10
>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
Probab=49.64 E-value=20 Score=29.25 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=17.2
Q ss_pred CCCCeEEEEe-eeCCCCCCceEEEE------eccccc
Q 026749 46 GNVASEVRLL-CDLEQPEPTWTVKH------LGGAMR 75 (234)
Q Consensus 46 g~~~~~lRlr-r~L~~p~~~W~lry------iG~pe~ 75 (234)
|=-|||+|+. +. +..|++.| +|.|.+
T Consensus 56 GfHPVEIrl~~~~----~~~W~i~YITDFsY~G~~~p 88 (148)
T 2v1l_A 56 GFHPVEIALSQSS----DGQWCIEYITDFAYVGNHFP 88 (148)
T ss_dssp CCCCEEEEEEECS----SSCEEEEEEEEEEEC---CC
T ss_pred CcCCEEEEEEecC----CCcEEEEEEEeecccCCCCc
Confidence 5579999999 43 67899975 566543
No 11
>1qsm_A HPA2 histone acetyltransferase; protein-acetyl coenzyme A complex; HET: ACO; 2.40A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1qso_A
Probab=35.32 E-value=16 Score=25.72 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.0
Q ss_pred cHHHHHHHhCceeeEEE
Q 026749 97 NALRLFNALGYKLDHEL 113 (234)
Q Consensus 97 ~v~~Fl~~LGfr~dyE~ 113 (234)
.+..|++.+||+.++..
T Consensus 130 ~a~~~y~k~Gf~~~~~~ 146 (152)
T 1qsm_A 130 RAQLLYVKVGYKAPKIL 146 (152)
T ss_dssp HHHHHHHHHEEECSEEE
T ss_pred HHHHHHHHcCCCccceE
Confidence 57889999999977653
No 12
>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}
Probab=29.33 E-value=11 Score=30.06 Aligned_cols=14 Identities=50% Similarity=0.619 Sum_probs=10.2
Q ss_pred cCCCceeeccccce
Q 026749 211 DGGGTTLFSPHTTR 224 (234)
Q Consensus 211 ~~~~~~~~~~~~~~ 224 (234)
+-|--.+|+||||-
T Consensus 30 ~~Gl~~vf~~HTTa 43 (129)
T 2cu5_A 30 HTGLVYLFVPHTTC 43 (129)
T ss_dssp CCEEEEEECCCSSE
T ss_pred cCcEEEEEeCCCcE
Confidence 34555899999974
No 13
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1
Probab=26.09 E-value=90 Score=22.29 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=17.2
Q ss_pred EEEeeec-cHHHHHHHhCceeeEEE
Q 026749 90 VESKVSK-NALRLFNALGYKLDHEL 113 (234)
Q Consensus 90 id~~~S~-~v~~Fl~~LGfr~dyE~ 113 (234)
+++..+| .+..|++.+||+...+-
T Consensus 124 l~v~~~N~~a~~~Y~k~GF~~~~~~ 148 (153)
T 1z4e_A 124 LTTDKQRPDALRFYEQLGFKASHEG 148 (153)
T ss_dssp EEEETTCTTHHHHHHHHTCEEEEEE
T ss_pred EEEccCChHHHHHHHHcCCceecee
Confidence 3333334 68999999999987653
No 14
>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A
Probab=25.99 E-value=1.3e+02 Score=21.16 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=18.5
Q ss_pred eEEEeeec--cHHHHHHHhCceeeEE
Q 026749 89 MVESKVSK--NALRLFNALGYKLDHE 112 (234)
Q Consensus 89 ~id~~~S~--~v~~Fl~~LGfr~dyE 112 (234)
.+...+++ ...+|+++|||+..++
T Consensus 6 ~~~l~v~D~~~a~~FY~~LG~~~~~~ 31 (126)
T 1ecs_A 6 TPNLPSRDFDSTAAFYERLGFGIVFR 31 (126)
T ss_dssp EEEEEESCHHHHHHHHHTTTCEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHCCCEEEec
Confidence 34456665 7888999999999876
No 15
>4f78_A D,D-dipeptidase/D,D-carboxypeptidase; center for structural genomics of infectious diseases; HET: MSE; 1.95A {Enterococcus faecalis}
Probab=25.63 E-value=22 Score=31.25 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=11.3
Q ss_pred CCceEEEEecccc
Q 026749 62 EPTWTVKHLGGAM 74 (234)
Q Consensus 62 ~~~W~lryiG~pe 74 (234)
-.|||+||+|.|.
T Consensus 164 yEPWH~rYvG~~~ 176 (255)
T 4f78_A 164 HEPWHFRYVGYPH 176 (255)
T ss_dssp CCTTEEEECCTTH
T ss_pred CCccEEEEeCHHH
Confidence 3689999999986
No 16
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=23.31 E-value=1.1e+02 Score=26.39 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=34.3
Q ss_pred cCCCCCChHHHHHHHHHHHhhhc--c---ceeeecCCcccCcccchhHHHHHHh
Q 026749 161 APASSENYTEVASAVSSFCEYLA--P---LLHLSKPGVSTGVVPTAAAAAVSLM 209 (234)
Q Consensus 161 apa~~e~~~~~a~~i~~FAeqL~--P---lV~L~K~d~~~~~~~t~~~~a~~~~ 209 (234)
.|..++|+ +.++++.|.+.+. | +..-+.+....|+=+++|.+||.+.
T Consensus 64 ~p~~~~Nl--v~~A~~~l~~~~g~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~ 115 (306)
T 3pyf_A 64 LPTDERNL--AWQAAELMAEHVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLV 115 (306)
T ss_dssp SCCSTTSH--HHHHHHHHHHHTTCCCCEEEEEEECSCTTSSSCHHHHHHHHHHH
T ss_pred CCCCCccH--HHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcchHHHHHHHHHH
Confidence 46667786 7788888887764 2 2223568889999999998888764
No 17
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=22.91 E-value=2.5e+02 Score=22.52 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=19.8
Q ss_pred CCCceeEEEEEcCCCCCChHHHHHHHHHHHhhh
Q 026749 150 VTPGIQLVEVTAPASSENYTEVASAVSSFCEYL 182 (234)
Q Consensus 150 v~~~s~LVEvSapa~~e~~~~~a~~i~~FAeqL 182 (234)
..++.|..|||.|--+--.-. .++...|...+
T Consensus 75 ~i~~~Y~LEVSSPGldRpL~~-~~df~r~~G~~ 106 (164)
T 1ib8_A 75 PFPEQYFLEITSPGLERPLKT-KDAVAGAVGKY 106 (164)
T ss_dssp CCCSCEEEEEECCSSSSCCSS-HHHHHHHCSEE
T ss_pred CCCCCeEEEEeCCCCCCCCCC-HHHHHHhCCcE
Confidence 345689999999975554422 34455555544
No 18
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=22.05 E-value=1.2e+02 Score=23.74 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEeeec---cHHHHHHHhCceeeEEEEE
Q 026749 90 VESKVSK---NALRLFNALGYKLDHELLR 115 (234)
Q Consensus 90 id~~~S~---~v~~Fl~~LGfr~dyE~~~ 115 (234)
+.+.+|+ +++..+++-||--+||+..
T Consensus 24 v~iP~Sk~~~~il~iL~~eGyI~~~~~~~ 52 (130)
T 1sei_A 24 LEVPASKIKREIAEILKREGFIRDYEYIE 52 (130)
T ss_dssp EEEECCHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred EEecCcHHHHHHHHHHHHCCCceeEEEEe
Confidence 3456665 8888999999999999874
No 19
>1a1d_A RNA polymerase; RPB8, OB fold, eukaryotic, yeast, nucleotidyltransferase; NMR {Saccharomyces cerevisiae} SCOP: b.40.4.8 PDB: 1i3q_H 1i50_H 1i6h_H 1k83_H* 1nik_H 1nt9_H 1pqv_H 1r5u_H 1r9s_H* 1r9t_H* 1sfo_H* 1twa_H* 1twc_H* 1twf_H* 1twg_H* 1twh_H* 1wcm_H 1y1v_H 1y1w_H 1y1y_H ...
Probab=21.11 E-value=83 Score=25.61 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=19.0
Q ss_pred eeEEEEEEeeEEEEee--CceEEEEEE
Q 026749 109 LDHELLRVGFAFHFQR--GAQITVTVS 133 (234)
Q Consensus 109 ~dyE~~~~G~~f~~~~--~g~ikI~Vs 133 (234)
-+|||+.-|..|+|.. +.+++|.+|
T Consensus 91 d~ydYVM~GkvYk~e~~~~~~~~vy~S 117 (146)
T 1a1d_A 91 DDYDYVMYGTAYKFEEVSKDLIAVYYS 117 (146)
T ss_pred cccCEEEeeEEEEEeecCCceEEEEEE
Confidence 6899999999999954 235666555
No 20
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=20.67 E-value=85 Score=21.22 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=26.8
Q ss_pred ccCcceeeeeeEEEeeeccHHHHHHHhCceeeEEEEE-----EeeEEE
Q 026749 79 AEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR-----VGFAFH 121 (234)
Q Consensus 79 ~~~~pa~VR~~id~~~S~~v~~Fl~~LGfr~dyE~~~-----~G~~f~ 121 (234)
...+-+.|++.-......++.++|...|=..+-.+.+ +||.|-
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV 53 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVV 53 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEE
Confidence 3445556666544333458889999998666666554 566654
No 21
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=20.22 E-value=3.7e+02 Score=22.26 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=81.1
Q ss_pred HHHHHhhhcCCCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCccee----------
Q 026749 17 LEILLQGICGVHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVL---------- 85 (234)
Q Consensus 17 L~~RL~GLCd~~~e~f~~hE~vfk~~~~-~g~~~~~lRlrr~L~~p~~~W~lryiG~pe~g~g~~~~pa~---------- 85 (234)
+..+|..+......++...-+-|-++.. .....+.||+|+. + .|+++.-|..- . ..+++..
T Consensus 37 ~~~~L~~~~~~~~~~~~q~n~YfDTpd~~L~~~~~aLRiR~~----~-~~tlK~p~~~g--~-~~~~~ey~e~~~~~~~~ 108 (234)
T 3bhd_A 37 TEERLQELGGTLEYRVTFRDTYYDTPELSLMQADHWLRRRED----S-GWELKCPGAAG--V-LGPHTEYKELTAEPTIV 108 (234)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEECTTCHHHHTTCEEEEETT----T-EEEEEEESSBT--T-BCTTSEEEEECSHHHHH
T ss_pred HHHHHHhCCCCCCCcceEEEEEeeCCChHHHhCCcEEEEECC----C-CeEEecCCccC--c-cCCcceeccccCccchh
Confidence 4567777654433444444555544311 1234688999875 2 39998755321 0 1111110
Q ss_pred --eeeeEE--EeeeccHHHHHHHhCceeeEEEEEEeeEEEEe-e----Cc-eEEEEEEEEeeecccCCCCCCccCCCcee
Q 026749 86 --VRSMVE--SKVSKNALRLFNALGYKLDHELLRVGFAFHFQ-R----GA-QITVTVSSVNKMLKLHATDEAVPVTPGIQ 155 (234)
Q Consensus 86 --VR~~id--~~~S~~v~~Fl~~LGfr~dyE~~~~G~~f~~~-~----~g-~ikI~Vs~v~k~~~~g~~d~~~~v~~~s~ 155 (234)
+|..+. +.-.+++...+..+||+.-+++-+.=..|.+. . .+ .+.|++-++. . |.-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~--------------G~~ 173 (234)
T 3bhd_A 109 AQLCKVLRADGLGAGDVAAVLGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-F--------------GYA 173 (234)
T ss_dssp HHHHHHHTC---CCSSHHHHHHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-T--------------SCE
T ss_pred hhhhhhhcCCccchhHHHHHHhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-C--------------CCE
Confidence 111111 11124788889999999998888777778761 1 14 7888877764 1 223
Q ss_pred EEEEE--cCCCCCChHHHHHHHHHHHhhhc
Q 026749 156 LVEVT--APASSENYTEVASAVSSFCEYLA 183 (234)
Q Consensus 156 LVEvS--apa~~e~~~~~a~~i~~FAeqL~ 183 (234)
.+||= ... .+......+.+..||++|-
T Consensus 174 ~~ElElEl~~-~~~~~~~~~~l~~la~~Lg 202 (234)
T 3bhd_A 174 VGEVEALVHE-EAEVPTALEKIHRLSSMLG 202 (234)
T ss_dssp EEEEEEEESS-GGGHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeCC-cccchHHHHHHHHHHHHcC
Confidence 66773 332 3344456778889999885
Done!