Query 026750
Match_columns 234
No_of_seqs 202 out of 1467
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 12:10:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 4.3E-64 9.3E-69 444.9 16.4 222 10-234 6-229 (275)
2 CHL00028 clpP ATP-dependent Cl 100.0 5.6E-55 1.2E-59 378.0 17.4 167 68-234 1-168 (200)
3 PRK12552 ATP-dependent Clp pro 100.0 1.1E-54 2.4E-59 381.3 16.6 167 68-234 1-186 (222)
4 COG0740 ClpP Protease subunit 100.0 2.2E-53 4.8E-58 367.3 16.0 150 85-234 15-164 (200)
5 PRK14513 ATP-dependent Clp pro 100.0 4.9E-52 1.1E-56 360.1 16.8 150 85-234 15-164 (201)
6 PRK14514 ATP-dependent Clp pro 100.0 5.7E-51 1.2E-55 357.8 16.1 150 85-234 42-191 (221)
7 PRK12551 ATP-dependent Clp pro 100.0 1.1E-49 2.3E-54 344.1 16.0 150 85-234 13-162 (196)
8 PRK00277 clpP ATP-dependent Cl 100.0 3.1E-47 6.7E-52 328.7 17.1 167 68-234 1-168 (200)
9 TIGR00493 clpP ATP-dependent C 100.0 1.3E-45 2.8E-50 316.8 16.0 150 85-234 14-163 (191)
10 PRK14512 ATP-dependent Clp pro 100.0 4.5E-43 9.7E-48 302.8 15.5 147 88-234 14-160 (197)
11 PRK12553 ATP-dependent Clp pro 100.0 3E-42 6.6E-47 299.2 15.0 149 85-233 23-173 (207)
12 PF00574 CLP_protease: Clp pro 100.0 2.6E-42 5.7E-47 290.8 11.0 149 85-233 4-152 (182)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 4.8E-40 1E-44 276.5 13.4 145 89-233 1-145 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 3.4E-38 7.3E-43 263.9 14.7 137 98-234 1-137 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 99.9 3.3E-27 7.2E-32 195.2 13.9 129 99-232 2-133 (160)
16 cd07015 Clp_protease_NfeD Nodu 99.9 5.5E-23 1.2E-27 174.7 13.1 126 99-233 3-136 (172)
17 cd00394 Clp_protease_like Case 99.9 9.2E-23 2E-27 167.9 12.7 133 99-233 1-135 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.8 5.6E-20 1.2E-24 156.6 13.4 130 99-232 3-135 (187)
19 cd07021 Clp_protease_NfeD_like 99.7 3.8E-17 8.2E-22 139.3 12.4 127 99-233 3-129 (178)
20 cd07023 S49_Sppa_N_C Signal pe 99.4 4.3E-12 9.3E-17 109.3 11.4 133 99-233 4-172 (208)
21 TIGR00706 SppA_dom signal pept 99.3 3.6E-11 7.9E-16 104.0 12.5 131 99-232 4-166 (207)
22 COG0616 SppA Periplasmic serin 99.3 1.4E-11 3.1E-16 113.5 8.5 90 99-190 63-161 (317)
23 TIGR00705 SppA_67K signal pept 99.3 7.1E-11 1.5E-15 116.8 13.6 133 99-233 312-483 (584)
24 cd07014 S49_SppA Signal peptid 99.2 1.2E-10 2.6E-15 98.0 11.5 115 110-233 23-140 (177)
25 cd07022 S49_Sppa_36K_type Sign 99.2 2.8E-10 6.1E-15 98.8 12.7 123 109-233 25-179 (214)
26 cd07019 S49_SppA_1 Signal pept 99.1 3.4E-09 7.5E-14 91.9 13.1 133 99-233 4-175 (211)
27 PF01972 SDH_sah: Serine dehyd 98.8 1.2E-08 2.7E-13 92.7 8.7 91 101-196 67-157 (285)
28 PRK11778 putative inner membra 98.7 3.2E-08 6.9E-13 92.2 8.6 93 99-193 94-190 (330)
29 PRK10949 protease 4; Provision 98.7 1E-07 2.2E-12 95.2 12.2 89 99-189 330-428 (618)
30 cd07018 S49_SppA_67K_type Sign 98.7 2.4E-07 5.3E-12 80.9 11.1 90 103-195 23-115 (222)
31 COG1030 NfeD Membrane-bound se 98.3 2.3E-06 5E-11 82.1 9.7 95 99-196 30-127 (436)
32 COG3904 Predicted periplasmic 98.0 3.9E-05 8.5E-10 67.8 10.1 96 99-199 78-174 (245)
33 TIGR00705 SppA_67K signal pept 97.1 0.0044 9.5E-08 61.9 11.4 85 108-195 75-163 (584)
34 cd06558 crotonase-like Crotona 97.0 0.003 6.5E-08 52.7 7.8 91 106-198 23-134 (195)
35 PRK05724 acetyl-CoA carboxylas 96.7 0.0085 1.8E-07 56.0 9.1 99 96-198 122-230 (319)
36 TIGR00513 accA acetyl-CoA carb 96.7 0.0082 1.8E-07 56.0 8.9 99 96-198 122-230 (316)
37 PRK10949 protease 4; Provision 96.7 0.018 3.9E-07 58.1 11.9 86 108-196 94-183 (618)
38 CHL00198 accA acetyl-CoA carbo 96.6 0.01 2.2E-07 55.5 8.4 99 96-198 125-233 (322)
39 PLN03229 acetyl-coenzyme A car 96.5 0.013 2.9E-07 59.9 9.3 99 96-198 213-321 (762)
40 PRK12319 acetyl-CoA carboxylas 96.3 0.025 5.3E-07 51.3 9.2 99 96-198 69-177 (256)
41 PLN03230 acetyl-coenzyme A car 96.2 0.019 4.2E-07 55.5 8.2 91 104-198 200-300 (431)
42 PRK06688 enoyl-CoA hydratase; 96.1 0.044 9.6E-07 48.5 9.4 89 106-198 29-137 (259)
43 TIGR03134 malonate_gamma malon 96.0 0.054 1.2E-06 48.6 9.6 109 106-215 45-169 (238)
44 PRK07511 enoyl-CoA hydratase; 95.9 0.057 1.2E-06 47.9 9.2 95 100-198 16-139 (260)
45 PRK08258 enoyl-CoA hydratase; 95.8 0.082 1.8E-06 47.6 9.8 89 106-198 41-154 (277)
46 PRK06072 enoyl-CoA hydratase; 95.7 0.083 1.8E-06 46.8 9.4 88 106-198 24-130 (248)
47 PRK05869 enoyl-CoA hydratase; 95.7 0.095 2.1E-06 45.8 9.5 95 100-198 21-140 (222)
48 PRK06210 enoyl-CoA hydratase; 95.5 0.089 1.9E-06 47.0 8.9 48 148-197 101-148 (272)
49 TIGR03189 dienoyl_CoA_hyt cycl 95.5 0.11 2.5E-06 46.1 9.5 91 100-194 14-126 (251)
50 PRK07854 enoyl-CoA hydratase; 95.4 0.13 2.7E-06 45.6 9.5 82 106-192 24-121 (243)
51 PF01343 Peptidase_S49: Peptid 95.4 0.039 8.4E-07 45.6 5.8 79 151-231 2-110 (154)
52 PRK03580 carnitinyl-CoA dehydr 95.4 0.09 1.9E-06 46.9 8.6 88 100-192 16-129 (261)
53 PRK06495 enoyl-CoA hydratase; 95.4 0.13 2.8E-06 45.7 9.5 96 100-199 17-139 (257)
54 PRK06023 enoyl-CoA hydratase; 95.3 0.13 2.9E-06 45.5 9.4 89 106-198 30-138 (251)
55 PRK06143 enoyl-CoA hydratase; 95.3 0.12 2.5E-06 46.1 9.0 86 106-195 31-138 (256)
56 PF00378 ECH: Enoyl-CoA hydrat 95.3 0.059 1.3E-06 47.1 6.9 89 106-198 22-131 (245)
57 PRK05981 enoyl-CoA hydratase; 95.3 0.12 2.6E-06 46.1 8.9 89 106-198 28-144 (266)
58 PRK07468 enoyl-CoA hydratase; 95.3 0.12 2.7E-06 46.0 9.0 86 106-195 29-138 (262)
59 PRK06190 enoyl-CoA hydratase; 95.2 0.15 3.3E-06 45.6 9.5 84 106-193 28-130 (258)
60 PRK09674 enoyl-CoA hydratase-i 95.2 0.13 2.9E-06 45.6 9.1 89 106-198 26-133 (255)
61 PRK07509 enoyl-CoA hydratase; 95.2 0.14 3E-06 45.4 9.2 87 106-196 27-141 (262)
62 TIGR03210 badI 2-ketocyclohexa 95.1 0.14 3.1E-06 45.5 8.9 86 106-195 26-132 (256)
63 PRK11423 methylmalonyl-CoA dec 95.1 0.14 3E-06 45.8 8.8 84 106-194 28-133 (261)
64 PLN02600 enoyl-CoA hydratase 95.1 0.15 3.3E-06 45.2 9.0 84 106-193 19-124 (251)
65 PLN02664 enoyl-CoA hydratase/d 95.1 0.13 2.8E-06 46.3 8.6 48 147-196 103-150 (275)
66 PLN02851 3-hydroxyisobutyryl-C 95.1 0.15 3.2E-06 49.1 9.4 95 97-195 52-176 (407)
67 PRK08138 enoyl-CoA hydratase; 95.0 0.17 3.7E-06 45.0 9.2 84 106-193 32-134 (261)
68 PRK07110 polyketide biosynthes 95.0 0.15 3.2E-06 45.2 8.7 87 106-196 29-133 (249)
69 PRK05864 enoyl-CoA hydratase; 95.0 0.19 4.2E-06 45.2 9.6 82 106-192 34-144 (276)
70 PLN03214 probable enoyl-CoA hy 95.0 0.15 3.2E-06 46.2 8.8 86 106-195 35-145 (278)
71 PRK05809 3-hydroxybutyryl-CoA 94.9 0.2 4.3E-06 44.5 9.2 87 106-196 28-136 (260)
72 PRK08260 enoyl-CoA hydratase; 94.9 0.17 3.8E-06 45.9 9.0 48 147-196 105-152 (296)
73 PRK09076 enoyl-CoA hydratase; 94.8 0.18 3.9E-06 44.9 8.6 87 106-196 26-134 (258)
74 TIGR02280 PaaB1 phenylacetate 94.8 0.22 4.7E-06 44.2 9.1 83 106-193 23-129 (256)
75 PRK08150 enoyl-CoA hydratase; 94.7 0.24 5.1E-06 44.1 9.3 47 147-195 84-130 (255)
76 PRK05870 enoyl-CoA hydratase; 94.7 0.28 6.1E-06 43.4 9.6 86 106-196 27-134 (249)
77 PLN02921 naphthoate synthase 94.6 0.28 6E-06 45.8 9.8 95 99-198 79-202 (327)
78 PRK07260 enoyl-CoA hydratase; 94.6 0.26 5.7E-06 43.7 9.3 83 106-192 26-133 (255)
79 TIGR01929 menB naphthoate synt 94.6 0.23 5.1E-06 44.2 8.9 50 147-198 89-138 (259)
80 PRK07327 enoyl-CoA hydratase; 94.5 0.27 5.8E-06 44.1 9.2 83 106-192 36-141 (268)
81 PRK06142 enoyl-CoA hydratase; 94.5 0.23 4.9E-06 44.5 8.7 88 106-198 30-150 (272)
82 PRK05980 enoyl-CoA hydratase; 94.5 0.2 4.3E-06 44.5 8.3 84 106-193 27-136 (260)
83 PRK07657 enoyl-CoA hydratase; 94.5 0.26 5.7E-06 43.8 8.9 87 106-196 28-136 (260)
84 PRK08140 enoyl-CoA hydratase; 94.4 0.4 8.7E-06 42.6 10.0 83 106-193 28-135 (262)
85 PLN02888 enoyl-CoA hydratase 94.4 0.33 7.1E-06 43.5 9.4 84 106-193 34-135 (265)
86 PRK07938 enoyl-CoA hydratase; 94.4 0.34 7.3E-06 43.0 9.4 87 106-196 25-133 (249)
87 PLN02988 3-hydroxyisobutyryl-C 94.4 0.29 6.2E-06 46.7 9.4 91 99-193 21-141 (381)
88 PRK07658 enoyl-CoA hydratase; 94.3 0.25 5.5E-06 43.7 8.5 85 106-194 25-131 (257)
89 PRK08321 naphthoate synthase; 94.3 0.37 8E-06 44.1 9.8 94 100-195 38-174 (302)
90 PRK08290 enoyl-CoA hydratase; 94.2 0.28 6.1E-06 44.6 8.7 51 147-199 110-160 (288)
91 PRK09245 enoyl-CoA hydratase; 94.2 0.42 9.1E-06 42.6 9.6 48 147-196 95-142 (266)
92 PRK05995 enoyl-CoA hydratase; 94.2 0.45 9.8E-06 42.3 9.8 89 106-198 28-140 (262)
93 PRK05674 gamma-carboxygeranoyl 94.1 0.33 7.1E-06 43.4 8.8 84 106-193 30-137 (265)
94 PRK09120 p-hydroxycinnamoyl Co 94.1 0.34 7.4E-06 43.7 8.9 85 106-194 32-141 (275)
95 PRK06144 enoyl-CoA hydratase; 93.9 0.47 1E-05 42.3 9.4 83 106-192 32-137 (262)
96 PRK08272 enoyl-CoA hydratase; 93.9 0.31 6.6E-06 44.5 8.3 44 147-192 119-162 (302)
97 TIGR01117 mmdA methylmalonyl-C 93.9 0.34 7.5E-06 47.9 9.2 94 103-198 328-433 (512)
98 PRK07396 dihydroxynaphthoic ac 93.9 0.48 1E-05 42.6 9.4 87 106-196 37-146 (273)
99 PLN02157 3-hydroxyisobutyryl-C 93.8 0.43 9.3E-06 45.9 9.5 94 99-196 49-172 (401)
100 PRK12478 enoyl-CoA hydratase; 93.8 0.32 6.9E-06 44.5 8.2 48 147-196 104-151 (298)
101 PRK06127 enoyl-CoA hydratase; 93.7 0.49 1.1E-05 42.4 9.2 95 100-198 24-147 (269)
102 PRK05617 3-hydroxyisobutyryl-C 93.7 0.37 8.1E-06 45.0 8.6 85 106-195 27-138 (342)
103 PRK06494 enoyl-CoA hydratase; 93.7 0.59 1.3E-05 41.6 9.6 89 106-198 28-135 (259)
104 PRK05862 enoyl-CoA hydratase; 93.6 0.5 1.1E-05 41.9 9.0 84 106-193 28-130 (257)
105 PF01039 Carboxyl_trans: Carbo 93.5 0.11 2.3E-06 51.0 4.8 93 104-198 308-412 (493)
106 PRK07112 polyketide biosynthes 93.4 0.71 1.5E-05 41.0 9.7 50 147-198 88-137 (255)
107 PRK07827 enoyl-CoA hydratase; 93.4 0.56 1.2E-05 41.7 8.9 84 106-193 30-137 (260)
108 PRK08788 enoyl-CoA hydratase; 93.2 0.35 7.6E-06 44.3 7.5 85 106-192 40-156 (287)
109 TIGR03200 dearomat_oah 6-oxocy 93.1 0.63 1.4E-05 44.3 9.2 88 106-198 52-165 (360)
110 PRK06213 enoyl-CoA hydratase; 93.1 0.83 1.8E-05 39.8 9.4 83 106-194 26-129 (229)
111 PRK06563 enoyl-CoA hydratase; 92.9 0.54 1.2E-05 41.7 8.0 88 106-198 23-133 (255)
112 PLN02267 enoyl-CoA hydratase/i 92.9 1.1 2.3E-05 39.7 9.9 87 106-194 23-132 (239)
113 PLN02874 3-hydroxyisobutyryl-C 92.8 0.54 1.2E-05 44.6 8.4 95 99-198 23-146 (379)
114 PRK08139 enoyl-CoA hydratase; 92.8 0.64 1.4E-05 41.6 8.4 88 106-198 35-145 (266)
115 PRK07659 enoyl-CoA hydratase; 92.7 0.96 2.1E-05 40.2 9.4 85 106-196 30-137 (260)
116 PLN02820 3-methylcrotonyl-CoA 92.3 1.1 2.4E-05 45.1 10.2 93 104-198 380-484 (569)
117 COG1024 CaiD Enoyl-CoA hydrata 92.2 0.62 1.3E-05 41.3 7.6 89 105-198 28-139 (257)
118 PRK08259 enoyl-CoA hydratase; 91.6 1.2 2.6E-05 39.6 8.7 84 106-193 27-129 (254)
119 PRK07799 enoyl-CoA hydratase; 91.1 1.2 2.7E-05 39.5 8.3 87 106-196 29-139 (263)
120 KOG1680 Enoyl-CoA hydratase [L 91.0 0.71 1.5E-05 42.7 6.7 90 105-198 60-168 (290)
121 COG0825 AccA Acetyl-CoA carbox 90.9 0.32 7E-06 45.3 4.4 70 127-198 150-229 (317)
122 PRK08252 enoyl-CoA hydratase; 90.9 1.2 2.5E-05 39.6 7.8 84 106-193 27-127 (254)
123 TIGR02440 FadJ fatty oxidation 90.3 1.8 3.9E-05 44.3 9.6 80 106-188 26-127 (699)
124 TIGR02437 FadB fatty oxidation 90.1 1.8 3.9E-05 44.5 9.4 86 106-195 31-140 (714)
125 PRK08184 benzoyl-CoA-dihydrodi 89.5 1.4 3.1E-05 44.0 7.9 85 106-192 49-160 (550)
126 TIGR03222 benzo_boxC benzoyl-C 89.3 1.7 3.6E-05 43.5 8.3 83 106-192 45-156 (546)
127 PRK11730 fadB multifunctional 89.3 2 4.4E-05 44.0 9.1 86 106-195 31-140 (715)
128 TIGR03133 malonate_beta malona 88.6 3 6.4E-05 38.4 8.8 93 101-196 70-177 (274)
129 PRK11154 fadJ multifunctional 87.6 3.6 7.9E-05 42.1 9.6 84 106-194 31-140 (708)
130 PRK07189 malonate decarboxylas 87.2 3.3 7.1E-05 38.6 8.3 93 101-196 79-186 (301)
131 TIGR00515 accD acetyl-CoA carb 83.7 6.5 0.00014 36.3 8.4 91 102-196 132-233 (285)
132 PRK05654 acetyl-CoA carboxylas 82.5 8.6 0.00019 35.6 8.7 91 102-196 133-234 (292)
133 TIGR02441 fa_ox_alpha_mit fatt 81.6 6.2 0.00013 40.8 8.2 84 106-194 38-147 (737)
134 PLN02820 3-methylcrotonyl-CoA 79.3 20 0.00043 36.3 10.6 90 102-195 141-244 (569)
135 PF06833 MdcE: Malonate decarb 77.7 11 0.00025 33.9 7.6 77 110-193 51-140 (234)
136 TIGR03222 benzo_boxC benzoyl-C 76.8 36 0.00079 34.2 11.6 89 106-198 295-415 (546)
137 COG4799 Acetyl-CoA carboxylase 73.8 8.4 0.00018 38.6 6.2 127 103-231 337-479 (526)
138 KOG1682 Enoyl-CoA isomerase [L 64.7 6.7 0.00015 35.4 3.1 45 147-193 117-161 (287)
139 PF08496 Peptidase_S49_N: Pept 64.5 11 0.00024 31.8 4.3 40 100-142 103-146 (155)
140 CHL00174 accD acetyl-CoA carbo 59.5 55 0.0012 30.6 8.2 91 102-196 145-247 (296)
141 PRK08184 benzoyl-CoA-dihydrodi 58.1 41 0.00088 33.8 7.6 89 106-198 299-419 (550)
142 cd06567 Peptidase_S41 C-termin 54.8 63 0.0014 27.5 7.4 68 108-177 72-166 (224)
143 cd07560 Peptidase_S41_CPP C-te 54.3 58 0.0013 28.2 7.2 67 110-177 62-153 (211)
144 TIGR01117 mmdA methylmalonyl-C 53.0 75 0.0016 31.6 8.5 92 101-196 93-194 (512)
145 TIGR00225 prc C-terminal pepti 46.1 63 0.0014 29.8 6.4 71 106-177 161-256 (334)
146 TIGR00161 conserved hypothetic 40.0 1.6E+02 0.0034 26.2 7.7 132 88-227 69-227 (238)
147 PF14566 PTPlike_phytase: Inos 39.0 66 0.0014 26.4 4.9 52 96-152 90-149 (149)
148 PF01039 Carboxyl_trans: Carbo 36.8 51 0.0011 32.4 4.5 92 101-196 68-171 (493)
149 PLN00049 carboxyl-terminal pro 36.4 1.1E+02 0.0023 29.1 6.5 78 98-176 195-300 (389)
150 TIGR00162 conserved hypothetic 36.4 2.8E+02 0.006 23.8 10.8 75 147-225 77-169 (188)
151 cd01844 SGNH_hydrolase_like_6 35.9 1.1E+02 0.0023 24.9 5.7 37 130-166 32-68 (177)
152 PF03808 Glyco_tran_WecB: Glyc 35.1 2.6E+02 0.0057 23.2 8.1 62 98-166 50-112 (172)
153 PRK14500 putative bifunctional 34.9 22 0.00048 33.5 1.6 50 140-190 121-181 (346)
154 COG0074 SucD Succinyl-CoA synt 34.3 1E+02 0.0022 28.9 5.7 79 100-192 176-255 (293)
155 PRK11186 carboxy-terminal prot 34.2 1E+02 0.0023 31.8 6.3 68 108-176 365-458 (667)
156 TIGR00661 MJ1255 conserved hyp 33.5 57 0.0012 29.4 4.0 46 129-178 1-47 (321)
157 COG0757 AroQ 3-dehydroquinate 33.3 68 0.0015 27.0 4.0 32 132-164 70-101 (146)
158 cd01834 SGNH_hydrolase_like_2 32.5 1.5E+02 0.0032 23.6 6.0 68 97-167 2-73 (191)
159 cd07561 Peptidase_S41_CPP_like 32.4 1.5E+02 0.0032 26.6 6.4 45 108-153 76-121 (256)
160 PF12982 DUF3866: Protein of u 28.1 1.9E+02 0.0042 27.4 6.5 100 68-178 214-318 (320)
161 KOG3877 NADH:ubiquinone oxidor 27.6 1.1E+02 0.0025 29.0 4.9 45 96-141 70-117 (393)
162 smart00245 TSPc tail specific 27.6 2.3E+02 0.0051 23.8 6.5 70 107-177 39-134 (192)
163 TIGR02886 spore_II_AA anti-sig 27.0 96 0.0021 23.0 3.7 78 99-178 11-92 (106)
164 PF03572 Peptidase_S41: Peptid 26.4 1.4E+02 0.003 23.7 4.8 66 111-177 17-112 (169)
165 KOG3093 5-formyltetrahydrofola 24.8 95 0.0021 27.4 3.6 45 111-155 31-75 (200)
166 COG3904 Predicted periplasmic 24.2 1.7E+02 0.0038 26.4 5.2 69 103-175 54-130 (245)
167 TIGR00282 metallophosphoestera 24.1 1.9E+02 0.004 26.5 5.6 61 98-162 2-66 (266)
168 COG0793 Prc Periplasmic protea 23.7 1.9E+02 0.0042 27.8 5.9 69 107-176 214-308 (406)
169 cd01825 SGNH_hydrolase_peri1 S 23.6 2.7E+02 0.0058 22.2 6.0 60 98-167 1-68 (189)
170 PLN00125 Succinyl-CoA ligase [ 23.6 1.7E+02 0.0037 27.2 5.3 64 99-167 180-245 (300)
171 KOG1679 Enoyl-CoA hydratase [L 23.5 1.3E+02 0.0029 27.5 4.4 49 145-195 114-162 (291)
172 KOG0540 3-Methylcrotonyl-CoA c 22.2 4.8E+02 0.01 26.3 8.2 85 104-193 363-461 (536)
173 cd01829 SGNH_hydrolase_peri2 S 22.1 4.2E+02 0.009 21.5 6.9 64 98-167 1-71 (200)
174 cd07562 Peptidase_S41_TRI Tric 21.3 5.7E+02 0.012 22.5 8.4 79 93-176 83-184 (266)
175 cd01455 vWA_F11C1-5a_type Von 21.1 4.6E+02 0.01 22.8 7.2 74 89-165 75-152 (191)
176 KOG1681 Enoyl-CoA isomerase [L 20.6 30 0.00066 31.7 -0.3 49 148-198 119-167 (292)
177 KOG1684 Enoyl-CoA hydratase [L 20.4 2.4E+02 0.0052 27.5 5.7 95 97-193 48-178 (401)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-64 Score=444.85 Aligned_cols=222 Identities=43% Similarity=0.650 Sum_probs=203.6
Q ss_pred cCCC--ccccceeeccccccCCCcccCCCCCchhhHHhhhhheeeecccCCCCccceeeeccCCCCcceeecCCCCCCch
Q 026750 10 YQPS--LSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQW 87 (234)
Q Consensus 10 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mp~g~P~v~~~~~g~~~~~w 87 (234)
.+|+ .+|+.+.|+||+|++.+.|. ..-++...+...+-.+++++.. .+++....++++++|.+++..++++.++|
T Consensus 6 ~~~~~s~~~~~~~~~~l~P~~~~~~~-~~~~~~r~~~~~~~~s~~sg~~--~~~~~~~~~~~~~~p~~~~~~~~rG~~~~ 82 (275)
T KOG0840|consen 6 ASPSLSSSSSPKRFSGLNPASTSNFP-KQRNVRRQLKSSTPKSLRSGGS--SNSRGWSLRAPILVPRFPIESPGRGRERP 82 (275)
T ss_pred cccccCcccccchhcccCchhhhhcc-ccccchhhhhccCcccccccCC--CCCCcccccccccCCcceeeccccCCCCc
Confidence 3453 36899999999999999988 5556666666666656655555 45557777899999999999999888899
Q ss_pred hchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccc
Q 026750 88 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY 167 (234)
Q Consensus 88 ~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~Aa 167 (234)
+|||++|||+|||||+++|||++++.|++||+||+.+|++|+|+||||||||++++|+||||+|+++++||.|+|+|+||
T Consensus 83 ~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~G~Aa 162 (275)
T KOG0840|consen 83 YDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGLAA 162 (275)
T ss_pred ccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeehhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750 168 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK 234 (234)
Q Consensus 168 S~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek 234 (234)
|||+|||+||+||+|+++||+|+|||||.++++|++.|+.++|+|+.++|+++.++|+++||||.|+
T Consensus 163 s~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~ 229 (275)
T KOG0840|consen 163 SMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV 229 (275)
T ss_pred hHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 2
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=5.6e-55 Score=377.97 Aligned_cols=167 Identities=47% Similarity=0.838 Sum_probs=163.6
Q ss_pred ccCCCCcceeecCCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHH
Q 026750 68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI 147 (234)
Q Consensus 68 mp~g~P~v~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaI 147 (234)
||+|+|+|++..++++.++|+|+|++||++|||||+++||++++++++++|+||+.+++.++|+||||||||+|++|++|
T Consensus 1 m~~~~p~~~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aI 80 (200)
T CHL00028 1 MPIGVPKVPFRLPGEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAI 80 (200)
T ss_pred CCCCCceeeeecCCCCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc-cccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026750 148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSR 226 (234)
Q Consensus 148 yD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~-~~G~a~di~~~a~el~~lr~~i~~iya~ 226 (234)
||+|++++.+|+|+|.|+|||||++||++|+||+|+++|||++|||||+++ ..|+++|+++++++|+++++.+.++|++
T Consensus 81 yd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~ 160 (200)
T CHL00028 81 YDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQ 160 (200)
T ss_pred HHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred hhCCCCCC
Q 026750 227 KTDYEGFK 234 (234)
Q Consensus 227 ~TG~~~ek 234 (234)
+||++.|+
T Consensus 161 ~Tg~~~e~ 168 (200)
T CHL00028 161 RTGKPLWV 168 (200)
T ss_pred HHCcCHHH
Confidence 99999764
No 3
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=1.1e-54 Score=381.34 Aligned_cols=167 Identities=35% Similarity=0.528 Sum_probs=162.7
Q ss_pred ccCCCCcceeecCCCCCCchhchHhhhcCCcEEEECcccChh----------hHHHHHHHHhcccccCCCCceEEEEeCC
Q 026750 68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEE----------FSNQILATMLYLDSVDDSKRVYMYINGP 137 (234)
Q Consensus 68 mp~g~P~v~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e----------~a~~iia~Ll~L~~~~~~k~I~L~INSP 137 (234)
||+|+|+||+..+++..+.|.|++++||++|||||+++|+++ ++++|++||+||+.+++.++|+||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSp 80 (222)
T PRK12552 1 SPIMAVQAPYYGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINST 80 (222)
T ss_pred CCCCcccccccCCCCCCCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCC
Confidence 799999999999998889999999999999999999999999 9999999999999999999999999999
Q ss_pred CCC---------ccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHH
Q 026750 138 GGD---------VTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN 208 (234)
Q Consensus 138 GG~---------v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~ 208 (234)
||+ +++|++|||+|++++++|+|+|+|+|||||++||+||+||+|+++|||++|||||+++.+|+++|+++
T Consensus 81 GGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~ 160 (222)
T PRK12552 81 GTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQI 160 (222)
T ss_pred CCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHH
Confidence 988 77889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750 209 EADELLRVRDYIFKELSRKTDYEGFK 234 (234)
Q Consensus 209 ~a~el~~lr~~i~~iya~~TG~~~ek 234 (234)
+++||+++++.+.++|+++|||+.|+
T Consensus 161 ~a~el~~~r~~l~~iya~~TG~~~e~ 186 (222)
T PRK12552 161 RAKEVLHNKRTMLEILSRNTGQTVEK 186 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999874
No 4
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-53 Score=367.31 Aligned_cols=150 Identities=41% Similarity=0.724 Sum_probs=146.9
Q ss_pred CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
..++|+|++|+++|+|||+|+|+++.++.+++||++|+++++.++|+||||||||+|++|++|||+||++++||+|+|+|
T Consensus 15 ~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G 94 (200)
T COG0740 15 ERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMG 94 (200)
T ss_pred CChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK 234 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek 234 (234)
+|||||++|++||+||||+++||||+|||||+++++|+++|++++|+|++++++.+.++|+++|||+.||
T Consensus 95 ~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~ 164 (200)
T COG0740 95 QAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEK 164 (200)
T ss_pred HHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875
No 5
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4.9e-52 Score=360.05 Aligned_cols=150 Identities=40% Similarity=0.684 Sum_probs=146.7
Q ss_pred CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
..|.|+|++||++|||||+++|+++++++|+++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|+|
T Consensus 15 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G 94 (201)
T PRK14513 15 ERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVG 94 (201)
T ss_pred ccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK 234 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek 234 (234)
+|||||++|++||+||||+++|||++|||||+++++|++.|++++++||+++++.+.++|+++||++.|+
T Consensus 95 ~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~ 164 (201)
T PRK14513 95 IAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEK 164 (201)
T ss_pred eehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764
No 6
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=5.7e-51 Score=357.79 Aligned_cols=150 Identities=41% Similarity=0.672 Sum_probs=146.8
Q ss_pred CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
+.|+|+|++||++|||||+++||+++++++++||++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|.|
T Consensus 42 ~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G 121 (221)
T PRK14514 42 VTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTG 121 (221)
T ss_pred CcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK 234 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek 234 (234)
+|||||++|+++|++|||+++|||++|||||+++..|+++|++++++|++++++.+.++|+++||++.|+
T Consensus 122 ~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~ 191 (221)
T PRK14514 122 MAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDK 191 (221)
T ss_pred EehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.1e-49 Score=344.11 Aligned_cols=150 Identities=43% Similarity=0.734 Sum_probs=146.5
Q ss_pred CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
+.|.|+|++||++|||||+++||++++++++++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|+|
T Consensus 13 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G 92 (196)
T PRK12551 13 ERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVG 92 (196)
T ss_pred ccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK 234 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek 234 (234)
+|||||++|+++|++|+|+++|||++|||||+++..|+++|+++++++|+++++.+.++|+++||++.|+
T Consensus 93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~ 162 (196)
T PRK12551 93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLER 162 (196)
T ss_pred EehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999763
No 8
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.1e-47 Score=328.71 Aligned_cols=167 Identities=40% Similarity=0.645 Sum_probs=160.6
Q ss_pred ccCCCCcceeec-CCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHH
Q 026750 68 MPIGTPKVLYRT-PGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA 146 (234)
Q Consensus 68 mp~g~P~v~~~~-~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~agla 146 (234)
||+|+|.||+.. ++++.+.|+|++++||++|+|||+|+|+++++++++++|++|+.+++.++|+||||||||++++|++
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~ 80 (200)
T PRK00277 1 MPIMMNLVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA 80 (200)
T ss_pred CCCCCCCCceeeccCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHH
Confidence 899999999866 5566788999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 226 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~ 226 (234)
|||+|++++.+|+|+|.|.|+|+|++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.++|++
T Consensus 81 I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~ 160 (200)
T PRK00277 81 IYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAE 160 (200)
T ss_pred HHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCC
Q 026750 227 KTDYEGFK 234 (234)
Q Consensus 227 ~TG~~~ek 234 (234)
+||++.|+
T Consensus 161 ~tg~~~~~ 168 (200)
T PRK00277 161 HTGQPLEK 168 (200)
T ss_pred HHCcCHHH
Confidence 99998763
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=1.3e-45 Score=316.75 Aligned_cols=150 Identities=40% Similarity=0.707 Sum_probs=146.0
Q ss_pred CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
+.|+|++++||++|+|||+|+|+++.+++++++|++|+.+++.++|+||||||||++++|++|||+|++++++|+|+|.|
T Consensus 14 ~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G 93 (191)
T TIGR00493 14 ERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIG 93 (191)
T ss_pred cccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK 234 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek 234 (234)
+|+|||++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.++|+++||+|.++
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~ 163 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQ 163 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999999999999999998999999999999999999999999999999999763
No 10
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4.5e-43 Score=302.77 Aligned_cols=147 Identities=27% Similarity=0.434 Sum_probs=142.7
Q ss_pred hchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccc
Q 026750 88 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY 167 (234)
Q Consensus 88 ~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~Aa 167 (234)
.+++++|+++|+|||+|+|+++++++|+++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+|+
T Consensus 14 ~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 14 DKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVA 93 (197)
T ss_pred chHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeH
Confidence 47889999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750 168 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK 234 (234)
Q Consensus 168 S~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek 234 (234)
|||++|+++|++|+|+++|||++|||||+++..|++.|+++++++++++++.+.++|+++||++.++
T Consensus 94 SaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~ 160 (197)
T PRK14512 94 SAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDK 160 (197)
T ss_pred hHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998763
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3e-42 Score=299.20 Aligned_cols=149 Identities=39% Similarity=0.650 Sum_probs=144.6
Q ss_pred CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
..|.|++++|+++|+|||+|+|+++++++++++|++++.+++.++|+||||||||++++|++|||+|++++.+|+|+|.|
T Consensus 23 ~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G 102 (207)
T PRK12553 23 VKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTG 102 (207)
T ss_pred CccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 55789999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCCC--CccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA--GAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF 233 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~--~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e 233 (234)
.|+|||++|+++|++|+|++.|||++|||||+ ++..|++.|+++++++++++++.+.++|+++||++.+
T Consensus 103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e 173 (207)
T PRK12553 103 QAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVE 173 (207)
T ss_pred ehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999998 6689999999999999999999999999999999875
No 12
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=2.6e-42 Score=290.76 Aligned_cols=149 Identities=37% Similarity=0.667 Sum_probs=141.6
Q ss_pred CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
..|+|||++|+++|+|||+|+||++++++++++|++|+.+++.++|+|+||||||++.+|++|||+|+.++.+|+|+|.|
T Consensus 4 ~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G 83 (182)
T PF00574_consen 4 EEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLG 83 (182)
T ss_dssp EEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred cEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeC
Confidence 47999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF 233 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e 233 (234)
.|+|+|++|+++|++++|++.|+|+||+|||+.+..|++.|+++++++++++++.+.++|+++||++.+
T Consensus 84 ~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~ 152 (182)
T PF00574_consen 84 LAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKE 152 (182)
T ss_dssp EEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH
T ss_pred ccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999865
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=4.8e-40 Score=276.55 Aligned_cols=145 Identities=48% Similarity=0.797 Sum_probs=141.7
Q ss_pred chHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcccccc
Q 026750 89 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYH 168 (234)
Q Consensus 89 Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS 168 (234)
|++++|+++|+|||+|+|+++.+++++++|++++.+++.++|+||||||||++.+|++|||.|+.++.+|+|++.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 68999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750 169 LAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF 233 (234)
Q Consensus 169 ~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e 233 (234)
+|++|+++|++|+|++.|||++|||+|+++..|+++|+++++++++++++.+.++|+++||++.+
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~ 145 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLE 145 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999865
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=3.4e-38 Score=263.90 Aligned_cols=137 Identities=34% Similarity=0.547 Sum_probs=133.9
Q ss_pred cEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCC
Q 026750 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG 177 (234)
Q Consensus 98 RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG 177 (234)
|+|||+|+|+++++++++++|++|+.+++.++|.||||||||+++++++|||+|+.++.+|+|++.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 79999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750 178 EKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK 234 (234)
Q Consensus 178 ~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek 234 (234)
++|+|+++||+++|||||+++..|++.|+++++++++++++.+.++|+++||++.|+
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 137 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEE 137 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 999999999999999999999999999999999999999999999999999999764
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.95 E-value=3.3e-27 Score=195.15 Aligned_cols=129 Identities=27% Similarity=0.399 Sum_probs=123.0
Q ss_pred EEEECcccCh---hhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHc
Q 026750 99 VIFIGQNIDE---EFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLA 175 (234)
Q Consensus 99 iIfL~g~Id~---e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIla 175 (234)
-|||+|+|++ ..++++.+.|.+++.+ ++|.|+||||||++.++++|+|.|+.++.||.|++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 4899999999 7999999999988654 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026750 176 GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEG 232 (234)
Q Consensus 176 aG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ 232 (234)
+|+ +|++.|+++||+|+|.++..|+..++++..++++++++.+.+.|++++|++.
T Consensus 79 a~d--~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~ 133 (160)
T cd07016 79 AGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSE 133 (160)
T ss_pred cCC--eEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 999 4999999999999999999999999999999999999999999999999874
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.90 E-value=5.5e-23 Score=174.69 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=112.3
Q ss_pred EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEc---cccccHHHHHHc
Q 026750 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLLA 175 (234)
Q Consensus 99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~---G~AaS~aslIla 175 (234)
+|-|.|.|++.....+...|.... +++.+.|.|+||||||++.++++|||+|+..+.||.|+|. |.|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 577899999988887777776554 4568899999999999999999999999999999999999 999999999999
Q ss_pred CCCCCCEEeccCceEeeeCCCCccccC-----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750 176 GGEKGNRSAMPLSRIALDSPAGAARGQ-----ADDIRNEADELLRVRDYIFKELSRKTDYEGF 233 (234)
Q Consensus 176 aG~kgkR~a~PnAriMIHqP~~~~~G~-----a~di~~~a~el~~lr~~i~~iya~~TG~~~e 233 (234)
+|++ |++.|+++++.|+|..+ .|+ +.|.+++.+++.++|+ ++++||++.+
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~ 136 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNAT 136 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHH
Confidence 9996 99999999999999765 366 6788999999988888 9999999865
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.89 E-value=9.2e-23 Score=167.86 Aligned_cols=133 Identities=20% Similarity=0.301 Sum_probs=124.4
Q ss_pred EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCC
Q 026750 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178 (234)
Q Consensus 99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~ 178 (234)
+|+|+|+|++.+..++++.|..++.+++.+.|.|++|||||++.++..|++.|+.++.||.+++.|.|+|+|.+|+++|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeccCceEeeeCCCCccccCH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750 179 KGNRSAMPLSRIALDSPAGAARGQA--DDIRNEADELLRVRDYIFKELSRKTDYEGF 233 (234)
Q Consensus 179 kgkR~a~PnAriMIHqP~~~~~G~a--~di~~~a~el~~lr~~i~~iya~~TG~~~e 233 (234)
+|++.|++++++|+|..+..+.. .+.+...+.+..+.+.+.+.+++++|.+.+
T Consensus 81 --~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~ 135 (161)
T cd00394 81 --KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTE 135 (161)
T ss_pred --EEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 59999999999999987765544 788888899999999999999999998865
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.83 E-value=5.6e-20 Score=156.60 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=113.2
Q ss_pred EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEc---cccccHHHHHHc
Q 026750 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLLA 175 (234)
Q Consensus 99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~---G~AaS~aslIla 175 (234)
+|.|.|+|++..++.+..+|..++.+ +.+.|.|+||||||++.++..||+.|+.++.||.+.+. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 57899999999999999999998854 47899999999999999999999999999999999998 999999999999
Q ss_pred CCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026750 176 GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEG 232 (234)
Q Consensus 176 aG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ 232 (234)
+||+ |++.|+|+|++|+|..+..+...+...+.+.+..++. ..+.|++++|++.
T Consensus 82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~ 135 (187)
T cd07020 82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNA 135 (187)
T ss_pred hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCH
Confidence 9995 9999999999999985544443455666677777765 5788899999863
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.73 E-value=3.8e-17 Score=139.30 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=104.0
Q ss_pred EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCC
Q 026750 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178 (234)
Q Consensus 99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~ 178 (234)
+|.+.|.|++..+..+...|.....+ +.+.|.|+||||||.+.++..|++.|+..+.||.+++.|.|+|+|++|+++|+
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 57799999998888777777666544 47899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750 179 KGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF 233 (234)
Q Consensus 179 kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e 233 (234)
+ +++.|+++++.|+|.....+++.+ +-+......+.+-|++++|++.+
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~ 129 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPD 129 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHH
Confidence 5 999999999999998655443322 12333333445559999998753
No 20
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.38 E-value=4.3e-12 Score=109.31 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=108.5
Q ss_pred EEEECcccC---hhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhc---CCCeEEEEccccccHHHH
Q 026750 99 VIFIGQNID---EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAGF 172 (234)
Q Consensus 99 iIfL~g~Id---~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~---~~~V~Tv~~G~AaS~asl 172 (234)
+|++.|+|+ +....++..+|..+..+++.+.|.|++|||||++..+..|++.|+.+ +.||.+++.|.|+|+|..
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence 688999999 78899999999999887789999999999999999999999988765 469999999999999999
Q ss_pred HHcCCCCCCEEeccCceE------eee------------CCCCcccc------------CHHHHHHHHHHHHHHHHHHHH
Q 026750 173 LLAGGEKGNRSAMPLSRI------ALD------------SPAGAARG------------QADDIRNEADELLRVRDYIFK 222 (234)
Q Consensus 173 IlaaG~kgkR~a~PnAri------MIH------------qP~~~~~G------------~a~di~~~a~el~~lr~~i~~ 222 (234)
|+++|++ |++.|++.+ |.| ++..-..| ..++.+..-+.|+.+.+.+.+
T Consensus 84 lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~ 161 (208)
T cd07023 84 IAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD 161 (208)
T ss_pred HHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 999999988 444 22111111 223555566677788889999
Q ss_pred HHHHhhCCCCC
Q 026750 223 ELSRKTDYEGF 233 (234)
Q Consensus 223 iya~~TG~~~e 233 (234)
.+++..|++.+
T Consensus 162 ~Va~~R~~~~~ 172 (208)
T cd07023 162 VVAEGRGMSGE 172 (208)
T ss_pred HHHhcCCCCHH
Confidence 99988887643
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.30 E-value=3.6e-11 Score=103.95 Aligned_cols=131 Identities=15% Similarity=0.194 Sum_probs=101.1
Q ss_pred EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcC--CCeEEEEccccccHHHHHHcC
Q 026750 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVGFAYHLAGFLLAG 176 (234)
Q Consensus 99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~--~~V~Tv~~G~AaS~aslIlaa 176 (234)
+|.|.|.|+ ....++...|..+..++..+.|.|.+|||||++..+..|++.|+.++ .||++++.|.|+|+|.+|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 688999998 45678888888887767789999999999999999999999999998 899999999999999999999
Q ss_pred CCCCCEEeccCceE------eeeCCCCc------c------cc------------CHHHHHHHHHHHHHHHHHHHHHHHH
Q 026750 177 GEKGNRSAMPLSRI------ALDSPAGA------A------RG------------QADDIRNEADELLRVRDYIFKELSR 226 (234)
Q Consensus 177 G~kgkR~a~PnAri------MIHqP~~~------~------~G------------~a~di~~~a~el~~lr~~i~~iya~ 226 (234)
|++ |++.|++.+ |-|..... . .| +..+.+..-+.|+.+.+.+.+.+++
T Consensus 83 aD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~ 160 (207)
T TIGR00706 83 ADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAK 160 (207)
T ss_pred CCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 995 999999875 33332100 0 01 1223333344566677777777777
Q ss_pred hhCCCC
Q 026750 227 KTDYEG 232 (234)
Q Consensus 227 ~TG~~~ 232 (234)
.-|.+.
T Consensus 161 ~R~~~~ 166 (207)
T TIGR00706 161 GRNLPV 166 (207)
T ss_pred cCCCCH
Confidence 666553
No 22
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.26 E-value=1.4e-11 Score=113.45 Aligned_cols=90 Identities=24% Similarity=0.272 Sum_probs=77.2
Q ss_pred EEEECcccChhh-------HHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCC--CeEEEEccccccH
Q 026750 99 VIFIGQNIDEEF-------SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKS--PVGTHCVGFAYHL 169 (234)
Q Consensus 99 iIfL~g~Id~e~-------a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~--~V~Tv~~G~AaS~ 169 (234)
+|.+.|.|.... .+.+.+.|..+...++.+.|.|.||||||++.++..||+.|+.++. ||+..+.++|||.
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 466777776433 5566666777777778999999999999999999999999999986 5999999999999
Q ss_pred HHHHHcCCCCCCEEeccCceE
Q 026750 170 AGFLLAGGEKGNRSAMPLSRI 190 (234)
Q Consensus 170 aslIlaaG~kgkR~a~PnAri 190 (234)
|.+|.+++++ .+|.|+|.+
T Consensus 143 GY~IA~aAd~--I~a~p~si~ 161 (317)
T COG0616 143 GYYIALAADK--IVADPSSIT 161 (317)
T ss_pred hhhhhccCCE--EEecCCcee
Confidence 9999999995 999999874
No 23
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.25 E-value=7.1e-11 Score=116.82 Aligned_cols=133 Identities=16% Similarity=0.089 Sum_probs=105.5
Q ss_pred EEEECcccChh-------hHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhc---CCCeEEEEcccccc
Q 026750 99 VIFIGQNIDEE-------FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYH 168 (234)
Q Consensus 99 iIfL~g~Id~e-------~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~---~~~V~Tv~~G~AaS 168 (234)
+|++.|+|.+. ..+.+.+.|..+..++..+.|.|+||||||++.++..|++.|+.. +.||.+.+.|+|+|
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 79999999852 245677777777766678999999999999999999999998755 47999999999999
Q ss_pred HHHHHHcCCCCCCEEeccCceE------eeeCCC----------------------Ccc-ccCHHHHHHHHHHHHHHHHH
Q 026750 169 LAGFLLAGGEKGNRSAMPLSRI------ALDSPA----------------------GAA-RGQADDIRNEADELLRVRDY 219 (234)
Q Consensus 169 ~aslIlaaG~kgkR~a~PnAri------MIHqP~----------------------~~~-~G~a~di~~~a~el~~lr~~ 219 (234)
.|.+|.++|++ +++.|++.+ +.+... ... ..+.++.+...+.++++.+.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999995 999999977 555210 001 12456677777788888888
Q ss_pred HHHHHHHhhCCCCC
Q 026750 220 IFKELSRKTDYEGF 233 (234)
Q Consensus 220 i~~iya~~TG~~~e 233 (234)
+.+..++..|++.|
T Consensus 470 F~~~Va~~R~l~~e 483 (584)
T TIGR00705 470 FLSVVSAGRNLTPT 483 (584)
T ss_pred HHHHHHhhCCCCHH
Confidence 88888887777654
No 24
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.22 E-value=1.2e-10 Score=97.97 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=95.0
Q ss_pred hHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHh---cCCCeEEEEccccccHHHHHHcCCCCCCEEecc
Q 026750 110 FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQS---LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP 186 (234)
Q Consensus 110 ~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~---~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~P 186 (234)
..+.+...+..+..++..+.|.|.+|||||++.....+++.++. .+.||.+++.|.|+|.|..|+++|+. |++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 35688888888887777889999999999999888887776654 46899999999999999999999995 99999
Q ss_pred CceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750 187 LSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF 233 (234)
Q Consensus 187 nAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e 233 (234)
+++|++|.+..+ .+..-..+..+.+.+.+.+++..|.+.+
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~ 140 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPE 140 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999999976543 1222346778889999999999887643
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.19 E-value=2.8e-10 Score=98.76 Aligned_cols=123 Identities=15% Similarity=0.232 Sum_probs=100.0
Q ss_pred hhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcC--CCeEEEEccccccHHHHHHcCCCCCCEEecc
Q 026750 109 EFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP 186 (234)
Q Consensus 109 e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~--~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~P 186 (234)
....++++.|..++.++..+.|.|.+|||||++.....|++.|+.++ .||.+++.|.|+|.|..|+++|+ ++++.|
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD--~i~a~~ 102 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAAD--RIVVTP 102 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCC--EEEEcC
Confidence 45678999999988777789999999999999999999999999997 99999999999999999999999 499999
Q ss_pred CceE------eeeCCCCcc------------cc------------CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750 187 LSRI------ALDSPAGAA------------RG------------QADDIRNEADELLRVRDYIFKELSRKTDYEGF 233 (234)
Q Consensus 187 nAri------MIHqP~~~~------------~G------------~a~di~~~a~el~~lr~~i~~iya~~TG~~~e 233 (234)
++++ +.|...... .| +.++-+..-+.++.+.+.+.+.+++..|++.+
T Consensus 103 ~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~ 179 (214)
T cd07022 103 TAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAA 179 (214)
T ss_pred CCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 9985 333321110 11 23455555666778899999999999888764
No 26
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.05 E-value=3.4e-09 Score=91.89 Aligned_cols=133 Identities=14% Similarity=0.045 Sum_probs=101.0
Q ss_pred EEEECcccChhh-------HHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHH---hcCCCeEEEEcccccc
Q 026750 99 VIFIGQNIDEEF-------SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQ---SLKSPVGTHCVGFAYH 168 (234)
Q Consensus 99 iIfL~g~Id~e~-------a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~---~~~~~V~Tv~~G~AaS 168 (234)
+|.+.|+|.+.. ..++...|..+..++..+.|.|.+|||||++.+...|++.|+ ..+.||.+++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 466667766532 367888888888877789999999999999999988888665 4567999999999999
Q ss_pred HHHHHHcCCCCCCEEeccCceEeeeCCC---------------------C-c---c-cc---CHHHHHHHHHHHHHHHHH
Q 026750 169 LAGFLLAGGEKGNRSAMPLSRIALDSPA---------------------G-A---A-RG---QADDIRNEADELLRVRDY 219 (234)
Q Consensus 169 ~aslIlaaG~kgkR~a~PnAriMIHqP~---------------------~-~---~-~G---~a~di~~~a~el~~lr~~ 219 (234)
.|.+|+++|++ +++.|++++...-.. . + . .. +.++-+.....++++.+.
T Consensus 84 ~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~ 161 (211)
T cd07019 84 GGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR 161 (211)
T ss_pred HHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999995 999999888322211 0 1 0 00 122333444678889999
Q ss_pred HHHHHHHhhCCCCC
Q 026750 220 IFKELSRKTDYEGF 233 (234)
Q Consensus 220 i~~iya~~TG~~~e 233 (234)
+.+..++..+++.+
T Consensus 162 f~~~Va~~R~~~~~ 175 (211)
T cd07019 162 FITLVADARHSTPE 175 (211)
T ss_pred HHHHHHhhCCCCHH
Confidence 99999999888754
No 27
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.83 E-value=1.2e-08 Score=92.69 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=78.6
Q ss_pred EECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCC
Q 026750 101 FIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKG 180 (234)
Q Consensus 101 fL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kg 180 (234)
.+...|+.+.++.+...+... ++.++|.|.|+||||.+.++..|.+.|+.++.+++.++-..|.|+|++|++++++
T Consensus 67 Pi~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe- 142 (285)
T PF01972_consen 67 PIYRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE- 142 (285)
T ss_pred ccceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe-
Confidence 455678888888887777654 3456899999999999999999999999999999999999999999999999995
Q ss_pred CEEeccCceEeeeCCC
Q 026750 181 NRSAMPLSRIALDSPA 196 (234)
Q Consensus 181 kR~a~PnAriMIHqP~ 196 (234)
-++.|+|.+-==.|.
T Consensus 143 -IvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 143 -IVMGPGAVLGPIDPQ 157 (285)
T ss_pred -EEECCCCccCCCCcc
Confidence 899999988755554
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.75 E-value=3.2e-08 Score=92.17 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=67.0
Q ss_pred EEEECcccChhhHHHHHHHHhcc-cccCCCCceEEEEeCCCCCccHHHHHHH---HHHhcCCCeEEEEccccccHHHHHH
Q 026750 99 VIFIGQNIDEEFSNQILATMLYL-DSVDDSKRVYMYINGPGGDVTPTLAIYD---TMQSLKSPVGTHCVGFAYHLAGFLL 174 (234)
Q Consensus 99 iIfL~g~Id~e~a~~iia~Ll~L-~~~~~~k~I~L~INSPGG~v~aglaIyD---~m~~~~~~V~Tv~~G~AaS~aslIl 174 (234)
+|.+.|.|+......+...+..+ ....+.+.|.|.||||||+|.+.--++. .++..+.||++.+.++|||.|.+|.
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 57788999975543332322221 1112236899999999999987444444 4455567999999999999999999
Q ss_pred cCCCCCCEEeccCceEeee
Q 026750 175 AGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 175 aaG~kgkR~a~PnAriMIH 193 (234)
|++++ .++.|.+.+...
T Consensus 174 saAD~--I~A~P~a~vGSI 190 (330)
T PRK11778 174 CVADK--IIAAPFAIVGSI 190 (330)
T ss_pred HhCCE--EEECCCCeEEee
Confidence 99995 899998876543
No 29
>PRK10949 protease 4; Provisional
Probab=98.73 E-value=1e-07 Score=95.20 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=77.9
Q ss_pred EEEECcccChh-------hHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhc---CCCeEEEEcccccc
Q 026750 99 VIFIGQNIDEE-------FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYH 168 (234)
Q Consensus 99 iIfL~g~Id~e-------~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~---~~~V~Tv~~G~AaS 168 (234)
+|++.|.|.+. ..+.++.+|.....++..+.|.|.||||||++.+...|++.|+.. +.||++...++|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 68899999753 256788888888878889999999999999999999999999755 47999999999999
Q ss_pred HHHHHHcCCCCCCEEeccCce
Q 026750 169 LAGFLLAGGEKGNRSAMPLSR 189 (234)
Q Consensus 169 ~aslIlaaG~kgkR~a~PnAr 189 (234)
.|.+|.+++++ .++.|.+.
T Consensus 410 ggY~iA~aad~--I~a~p~t~ 428 (618)
T PRK10949 410 GGYWISTPANY--IVASPSTL 428 (618)
T ss_pred HHHHHHHhcCE--EEECCCCc
Confidence 99999999995 89999765
No 30
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.66 E-value=2.4e-07 Score=80.93 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=78.0
Q ss_pred CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhc---CCCeEEEEccccccHHHHHHcCCCC
Q 026750 103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAGFLLAGGEK 179 (234)
Q Consensus 103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~---~~~V~Tv~~G~AaS~aslIlaaG~k 179 (234)
.+..++.....++..|..+..++..+.|.|.+|||||.+.+...|++.|+.. +.||.+++.| |+|.|.+|.+++++
T Consensus 23 ~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~ 101 (222)
T cd07018 23 GGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE 101 (222)
T ss_pred cCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE
Confidence 3444556778899999999887778999999999999999999999999754 5799999987 99999999999994
Q ss_pred CCEEeccCceEeeeCC
Q 026750 180 GNRSAMPLSRIALDSP 195 (234)
Q Consensus 180 gkR~a~PnAriMIHqP 195 (234)
+++.|++.+.+.-.
T Consensus 102 --I~a~p~~~vg~iGv 115 (222)
T cd07018 102 --IYLNPSGSVELTGL 115 (222)
T ss_pred --EEECCCceEEeecc
Confidence 99999999999744
No 31
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.3e-06 Score=82.13 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=83.2
Q ss_pred EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEc---cccccHHHHHHc
Q 026750 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLLA 175 (234)
Q Consensus 99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~---G~AaS~aslIla 175 (234)
++.+.|+|++.+++.+...|..-+. +....+.|.+|+|||-+.+...|.+.+...+.||..++. +.|+|+|++|+.
T Consensus 30 vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m 108 (436)
T COG1030 30 VIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILM 108 (436)
T ss_pred EEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHH
Confidence 6789999999999999888876554 446789999999999999999999999999999777765 369999999999
Q ss_pred CCCCCCEEeccCceEeeeCCC
Q 026750 176 GGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 176 aG~kgkR~a~PnAriMIHqP~ 196 (234)
+.+. -+|.|.+.+-=-+|-
T Consensus 109 ~~hi--aaMAPgT~iGaa~Pi 127 (436)
T COG1030 109 ATHI--AAMAPGTNIGAATPI 127 (436)
T ss_pred hcCh--hhhCCCCccccccee
Confidence 9995 688899988888885
No 32
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.04 E-value=3.9e-05 Score=67.79 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=77.5
Q ss_pred EEEECcccChhhHHHHHHHHhcccccCCCCceE-EEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCC
Q 026750 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY-MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG 177 (234)
Q Consensus 99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG 177 (234)
-|.+.+++-+--+....+.|+.-. ...-++ +.+|||||+|..++++-..|+..+.++..-...+|+|++.++|++|
T Consensus 78 ~VvVse~~a~~da~sal~~lir~~---G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagG 154 (245)
T COG3904 78 PVVVSEPGANVDAASALGRLIRKA---GLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGG 154 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHhcc---CceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcc
Confidence 456777777655555555555322 223344 7789999999999999999999999988888899999999999999
Q ss_pred CCCCEEeccCceEeeeCCCCcc
Q 026750 178 EKGNRSAMPLSRIALDSPAGAA 199 (234)
Q Consensus 178 ~kgkR~a~PnAriMIHqP~~~~ 199 (234)
. .|++-+.+.|-+||+....
T Consensus 155 v--rRvve~~ayiGVHq~~~~g 174 (245)
T COG3904 155 V--RRVVEDFAYIGVHQITTTG 174 (245)
T ss_pred e--eeeecccceeeeeeccccC
Confidence 8 5999999999999997543
No 33
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.13 E-value=0.0044 Score=61.91 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHhcccccCCCCceEEEEeC-CCCCccHHHHHHHHHHhcC---CCeEEEEccccccHHHHHHcCCCCCCEE
Q 026750 108 EEFSNQILATMLYLDSVDDSKRVYMYING-PGGDVTPTLAIYDTMQSLK---SPVGTHCVGFAYHLAGFLLAGGEKGNRS 183 (234)
Q Consensus 108 ~e~a~~iia~Ll~L~~~~~~k~I~L~INS-PGG~v~aglaIyD~m~~~~---~~V~Tv~~G~AaS~aslIlaaG~kgkR~ 183 (234)
+....+++.+|.....++..+.|.|.||+ |||.+.....|++.|+..+ .||+++..+. +|.+.+|.+++++ .+
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD~--I~ 151 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFADE--II 151 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCCE--EE
Confidence 34567899999999888889999999996 5777777788999998664 7899988765 6999999999985 89
Q ss_pred eccCceEeeeCC
Q 026750 184 AMPLSRIALDSP 195 (234)
Q Consensus 184 a~PnAriMIHqP 195 (234)
+.|.+.+.++-.
T Consensus 152 ~~p~G~v~~~G~ 163 (584)
T TIGR00705 152 LNPMGSVDLHGF 163 (584)
T ss_pred ECCCceEEeece
Confidence 999999977643
No 34
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=97.02 E-value=0.003 Score=52.75 Aligned_cols=91 Identities=16% Similarity=0.101 Sum_probs=66.6
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCcc-----------------HHHHHHHHHHhcCCCeEEEEcc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVT-----------------PTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~-----------------aglaIyD~m~~~~~~V~Tv~~G 164 (234)
++.++.+++.+.+..++.+++.+-|.|.-+ |.|+++. ....++..|..++.||.+.+.|
T Consensus 23 ~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 23 LSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 467788889998888876444333333322 3444432 1234556677888999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.|.+.|..+++++|- |++.++++|.+..+..+
T Consensus 103 ~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G 134 (195)
T cd06558 103 AALGGGLELALACDI--RIAAEDAKFGLPEVKLG 134 (195)
T ss_pred eeecHHHHHHHhCCE--EEecCCCEEechhhhcC
Confidence 999999999999994 99999999998877654
No 35
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=96.75 E-value=0.0085 Score=55.98 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=72.8
Q ss_pred CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHHH---hcCCCeEEEEccc
Q 026750 96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTMQ---SLKSPVGTHCVGF 165 (234)
Q Consensus 96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m~---~~~~~V~Tv~~G~ 165 (234)
++++-..+|-++++........+..-+. . .-||.-+++|||..+.. +-+|...+. ..+.|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~peg~rKa~R~m~lA~~-f-~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe 199 (319)
T PRK05724 122 KEKIRRNFGMPRPEGYRKALRLMKMAEK-F-GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE 199 (319)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 5566667888888766555443333222 2 46899999999976531 234444444 6678999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|.|.|++.++.++. .++.|+|.+.+=.|.+.
T Consensus 200 g~sGGAla~~~aD~--v~m~~~A~~svisPEg~ 230 (319)
T PRK05724 200 GGSGGALAIGVGDR--VLMLEYSTYSVISPEGC 230 (319)
T ss_pred ccHHHHHHHhccCe--eeeecCceEeecCHHHH
Confidence 99999999988884 89999999999988754
No 36
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.74 E-value=0.0082 Score=56.01 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=72.8
Q ss_pred CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHHH---hcCCCeEEEEccc
Q 026750 96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTMQ---SLKSPVGTHCVGF 165 (234)
Q Consensus 96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m~---~~~~~V~Tv~~G~ 165 (234)
++++-...|-++++-.......+. +.... .-||.-++|+||..+.. +-+|...+. ....|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~-lA~~f-~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMK-MAERF-KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 455556678888876655444333 22222 46899999999987432 334555554 5578999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|+|.|++.++.++ ..++.|+|.+.+=.|.+.
T Consensus 200 ggsGGAla~~~aD--~v~m~~~a~~sVisPEg~ 230 (316)
T TIGR00513 200 GGSGGALAIGVGD--KVNMLEYSTYSVISPEGC 230 (316)
T ss_pred cccHHHhhhccCC--EEEEecCceEEecCHHHH
Confidence 9999999888888 489999999999999764
No 37
>PRK10949 protease 4; Provisional
Probab=96.73 E-value=0.018 Score=58.12 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHH-HHHHHHHHhcC---CCeEEEEccccccHHHHHHcCCCCCCEE
Q 026750 108 EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT-LAIYDTMQSLK---SPVGTHCVGFAYHLAGFLLAGGEKGNRS 183 (234)
Q Consensus 108 ~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ag-laIyD~m~~~~---~~V~Tv~~G~AaS~aslIlaaG~kgkR~ 183 (234)
+....+++..|.....++..+.|.|.||||||...+. ..|++.|+..+ .||+++ ...+++.+.+|++++++ .+
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~ 170 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY 170 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence 3455689999998888888999999999999877666 58999887664 689987 44557888899989985 89
Q ss_pred eccCceEeeeCCC
Q 026750 184 AMPLSRIALDSPA 196 (234)
Q Consensus 184 a~PnAriMIHqP~ 196 (234)
+.|.+.+.++-..
T Consensus 171 l~P~G~v~~~G~~ 183 (618)
T PRK10949 171 LSPQGVVDLHGFA 183 (618)
T ss_pred ECCCceEEEeeee
Confidence 9999999887644
No 38
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=96.58 E-value=0.01 Score=55.53 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=72.1
Q ss_pred CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHH---HhcCCCeEEEEccc
Q 026750 96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTM---QSLKSPVGTHCVGF 165 (234)
Q Consensus 96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m---~~~~~~V~Tv~~G~ 165 (234)
++++-..+|-++++-.......+..-+ .. .-||.-+|+|||..+.. +-+|...+ -..+.|+.+++.|-
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~Rlm~lA~-~f-~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGe 202 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALRLMKHAN-KF-GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE 202 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHH-Hc-CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCc
Confidence 445545567788876655544433222 22 46899999999987531 23555544 46678999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|.|.|++.++.++ ..++.++|.+.+=.|.+.
T Consensus 203 ggsGGAlal~~aD--~V~m~e~a~~sVisPEg~ 233 (322)
T CHL00198 203 GGSGGALGIGIGD--SIMMLEYAVYTVATPEAC 233 (322)
T ss_pred ccHHHHHhhhcCC--eEEEeCCeEEEecCHHHH
Confidence 9999999888888 489999999999999754
No 39
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.52 E-value=0.013 Score=59.91 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=71.3
Q ss_pred CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCcc-------HHHHHHHHHH---hcCCCeEEEEccc
Q 026750 96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT-------PTLAIYDTMQ---SLKSPVGTHCVGF 165 (234)
Q Consensus 96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~-------aglaIyD~m~---~~~~~V~Tv~~G~ 165 (234)
++|+-..+|-++++-.......+. +.... .-||.-+|+|||..+. .+-+|...+. ....|+.++++|-
T Consensus 213 ke~~~rnfG~~~peGyRKAlRlmk-LAekf-gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGe 290 (762)
T PLN03229 213 KENIMRNFGMPTPHGYRKALRMMY-YADHH-GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGE 290 (762)
T ss_pred cccccccCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 444555666666665544443333 22222 4689999999998762 3445665555 5568999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|+|.|++.++.++. .+|.|+|.+.+=.|.+.
T Consensus 291 ggSGGAlA~g~aD~--VlMle~A~~sVisPEga 321 (762)
T PLN03229 291 GGSGGALAIGCANK--LLMLENAVFYVASPEAC 321 (762)
T ss_pred cchHHHHHhhcCCE--EEEecCCeEEecCHHHH
Confidence 99999999999984 89999999999888764
No 40
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=96.35 E-value=0.025 Score=51.31 Aligned_cols=99 Identities=19% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHHH---hcCCCeEEEEccc
Q 026750 96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTMQ---SLKSPVGTHCVGF 165 (234)
Q Consensus 96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m~---~~~~~V~Tv~~G~ 165 (234)
++++...+|-++++-.......+. +.... .-||.-++||||..+.. +-.|...+. ..+.|+.+++.|-
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~-lA~~~-~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMK-QAEKF-GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 445556778888876555544333 32222 46899999999987522 234555544 4468999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|.|.|++.++.++. .++.|++.+.+=.|.+.
T Consensus 147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~ 177 (256)
T PRK12319 147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGF 177 (256)
T ss_pred cCcHHHHHhhcCCE--EEEecCceEEEcCHHHH
Confidence 99999999998884 89999999999999753
No 41
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=96.22 E-value=0.019 Score=55.46 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=65.9
Q ss_pred cccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHH---HhcCCCeEEEEccccccHHHHH
Q 026750 104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTM---QSLKSPVGTHCVGFAYHLAGFL 173 (234)
Q Consensus 104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m---~~~~~~V~Tv~~G~AaS~aslI 173 (234)
|-++++-.......+..-+. . .-||.-+||+||..+.. +-+|...+ -....|+.++++|-+.|.|++.
T Consensus 200 G~~~peGyRKAlR~mklAek-f-~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla 277 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEK-F-GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA 277 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence 45666655544443332222 2 46899999999976532 23565555 4556899999999999999999
Q ss_pred HcCCCCCCEEeccCceEeeeCCCCc
Q 026750 174 LAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 174 laaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
++.|+ ..++.|||.+.+=.|.+.
T Consensus 278 lg~aD--~VlMle~A~ysVisPEga 300 (431)
T PLN03230 278 IGCGN--RMLMMENAVYYVASPEAC 300 (431)
T ss_pred hhcCC--EEEEecCCEEEecCHHHH
Confidence 99898 489999999999988653
No 42
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=96.11 E-value=0.044 Score=48.47 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=64.5
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH--------------HHHHHHHHHhcCCCeEEEEccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP--------------TLAIYDTMQSLKSPVGTHCVGF 165 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a--------------glaIyD~m~~~~~~V~Tv~~G~ 165 (234)
++.++..++.+.+..++.++..+- |.|.+ .|+|+.. ...+++.|..++.||.+.+.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~ 106 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRV--VVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGP 106 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence 778888888888888775433322 33343 3344321 1245667778899999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|.+.|.-|++++|- |++.++++|-+....-|
T Consensus 107 a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G 137 (259)
T PRK06688 107 AVGVGVSLALACDL--VYASESAKFSLPFAKLG 137 (259)
T ss_pred eecHHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence 99999999999994 99999998887655433
No 43
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.03 E-value=0.054 Score=48.64 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=70.4
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCc----------cHHHHHHHHHH---hcCCCeEEEEccccccHHHH
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV----------TPTLAIYDTMQ---SLKSPVGTHCVGFAYHLAGF 172 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v----------~aglaIyD~m~---~~~~~V~Tv~~G~AaS~asl 172 (234)
++-+-+......+...-..+..-||..++++||=.+ .++-.+.+.+. ..+.|+.+++.|-+.|.|.+
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 554444444444443211224579999999999553 33333334444 44599999999999998888
Q ss_pred HHcCCCCCCEEeccCceEeeeCCCCc---cccCHHHHHHHHHHHHH
Q 026750 173 LLAGGEKGNRSAMPLSRIALDSPAGA---ARGQADDIRNEADELLR 215 (234)
Q Consensus 173 IlaaG~kgkR~a~PnAriMIHqP~~~---~~G~a~di~~~a~el~~ 215 (234)
-+..+. ...+++|++.+-+=.|.+. .+-+.+++++.++++..
T Consensus 125 amg~~a-d~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~ 169 (238)
T TIGR03134 125 AHGLQA-DRIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPV 169 (238)
T ss_pred HHccCc-CeEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhh
Confidence 886422 2589999999988888754 24555565555555443
No 44
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=95.91 E-value=0.057 Score=47.94 Aligned_cols=95 Identities=9% Similarity=0.083 Sum_probs=66.5
Q ss_pred EEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH------------------HHHHHH
Q 026750 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT------------------LAIYDT 150 (234)
Q Consensus 100 IfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag------------------laIyD~ 150 (234)
|.|+.+ ++.++..++.+.|..++.+++.+ .|.|.+.| +|+... ..++..
T Consensus 16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr--~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (260)
T PRK07511 16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIR--AVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRA 93 (260)
T ss_pred EEECCcccccCCCHHHHHHHHHHHHHhccCCCeE--EEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 456554 67788888888888776543222 23344433 443210 235566
Q ss_pred HHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 151 m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|...+.||.+.+.|.|.+.|..|++++| -|++.++++|-+..-.-|
T Consensus 94 l~~~~kpvIAav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G 139 (260)
T PRK07511 94 IRAFPKPVIAAVEGAAAGAGFSLALACD--LLVAARDAKFVMAYVKVG 139 (260)
T ss_pred HHcCCCCEEEEECCeeehHHHHHHHhCC--EEEeeCCCEEeccccccC
Confidence 7788999999999999999999999999 499999998887554433
No 45
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=95.77 E-value=0.082 Score=47.56 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=64.4
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH-------------------HHHHHHHHhcCCCeEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT-------------------LAIYDTMQSLKSPVGT 160 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag-------------------laIyD~m~~~~~~V~T 160 (234)
++.++..++.+.+..++.++..+ .|.|.+. |+|+..- ..+++.|..++.||.+
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr--~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 118 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVK--AVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIA 118 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67778888888888776433222 2334443 4444321 1356677788999999
Q ss_pred EEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.+.|.|.+.|.-|++++|- |++.++++|.+....-|
T Consensus 119 aV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G 154 (277)
T PRK08258 119 AVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVG 154 (277)
T ss_pred EECCeeehHHHHHHHhCCE--EEecCCCEEeccccccC
Confidence 9999999999999999994 99999999988766544
No 46
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=95.71 E-value=0.083 Score=46.77 Aligned_cols=88 Identities=8% Similarity=0.042 Sum_probs=63.1
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEe------CCCCCccHH------------HHHHHHHHhcCCCeEEEEcccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYIN------GPGGDVTPT------------LAIYDTMQSLKSPVGTHCVGFA 166 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~IN------SPGG~v~ag------------laIyD~m~~~~~~V~Tv~~G~A 166 (234)
++.++.+++.+.+..++.++ ++. |.|. |.|+|+..- ..++..|..++.||.+.+.|.|
T Consensus 24 l~~~~~~~l~~a~~~~~~d~---~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 100 (248)
T PRK06072 24 LNLEMRNEFISKLKQINADP---KIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVT 100 (248)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 67788888888888776543 333 2333 334554320 1245567778899999999999
Q ss_pred ccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 167 aS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
...|.-|++++|- |++.++++|-+....-|
T Consensus 101 ~GgG~~lal~cD~--~ia~~~a~f~~~~~~~G 130 (248)
T PRK06072 101 AGACIGIALSTDF--KFASRDVKFVTAFQRLG 130 (248)
T ss_pred ehHHHHHHHhCCE--EEEcCCCEEecchhhcC
Confidence 9999999999994 99999999877555433
No 47
>PRK05869 enoyl-CoA hydratase; Validated
Probab=95.67 E-value=0.095 Score=45.85 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=67.3
Q ss_pred EEECcc----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH---------------HHHHHHHHhc
Q 026750 100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT---------------LAIYDTMQSL 154 (234)
Q Consensus 100 IfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag---------------laIyD~m~~~ 154 (234)
|.|+.+ ++.+...++.+.+..++.+++.+- +.|.+.| +++... ..+++.|..+
T Consensus 21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~--vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (222)
T PRK05869 21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVAA--VILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAI 98 (222)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence 445544 777888888888888875443332 3445444 443221 2355667888
Q ss_pred CCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 155 ~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
+.||.+.+.|.|...|..|++++|- |++.++++|-+-...-|
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 140 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAG 140 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccC
Confidence 9999999999999999999999994 99999988877544433
No 48
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=95.51 E-value=0.089 Score=47.02 Aligned_cols=48 Identities=15% Similarity=0.051 Sum_probs=42.0
Q ss_pred HHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCC
Q 026750 148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG 197 (234)
Q Consensus 148 yD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~ 197 (234)
++.|..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+..+.-
T Consensus 101 ~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~ 148 (272)
T PRK06210 101 YHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARR 148 (272)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhc
Confidence 56677889999999999999999999999994 9999999998765543
No 49
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=95.49 E-value=0.11 Score=46.11 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=64.1
Q ss_pred EEECcc----cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH------------HHHHHHHHhcCCC
Q 026750 100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT------------LAIYDTMQSLKSP 157 (234)
Q Consensus 100 IfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag------------laIyD~m~~~~~~ 157 (234)
|.|+.+ ++.++..++.+.+..++.++..+ .|.|-+. |+|+.+. ..+++.|..++.|
T Consensus 14 itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr--~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 91 (251)
T TIGR03189 14 LRLARPKANIVDAAMIAALSAALGEHLEDSALR--AVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVP 91 (251)
T ss_pred EEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCce--EEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCC
Confidence 455655 77888888888888877543322 2334343 4444320 1245567788999
Q ss_pred eEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750 158 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDS 194 (234)
Q Consensus 158 V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHq 194 (234)
|.+.+.|.|.+.|.-|.+++|- |++.++++|-+=.
T Consensus 92 vIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe 126 (251)
T TIGR03189 92 ILVAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPE 126 (251)
T ss_pred EEEEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCch
Confidence 9999999999999999999994 8888888876633
No 50
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=95.43 E-value=0.13 Score=45.57 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=60.1
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH----------HHHHHHHHHhcCCCeEEEEccccccH
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP----------TLAIYDTMQSLKSPVGTHCVGFAYHL 169 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a----------glaIyD~m~~~~~~V~Tv~~G~AaS~ 169 (234)
++.++..++.+.+..++. +.. -.|.|-+ .|+|+.. ...+++.|..++.||.+.+.|.|.+.
T Consensus 24 l~~~~~~~l~~al~~~~~-~~v--r~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg 100 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-ESA--RAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA 100 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-CCc--eEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence 778888888888877662 222 2333443 4455542 12355667788999999999999999
Q ss_pred HHHHHcCCCCCCEEeccCceEee
Q 026750 170 AGFLLAGGEKGNRSAMPLSRIAL 192 (234)
Q Consensus 170 aslIlaaG~kgkR~a~PnAriMI 192 (234)
|.-|++++|- |++.++++|.+
T Consensus 101 G~~lal~cD~--~ia~~~a~f~~ 121 (243)
T PRK07854 101 GLQLAMACDL--RVVAPEAYFQF 121 (243)
T ss_pred HHHHHHhCCE--EEEcCCCEEec
Confidence 9999999994 99999988765
No 51
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=95.41 E-value=0.039 Score=45.58 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=49.3
Q ss_pred HHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc---cc------c--------------------
Q 026750 151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA---AR------G-------------------- 201 (234)
Q Consensus 151 m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~---~~------G-------------------- 201 (234)
.+..+.||++++.++|+|.+.+|+++|++ .++.|.+.+...-.... +. |
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 35677899999999999999999999995 89999998876544311 00 1
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026750 202 -QADDIRNEADELLRVRDYIFKELSRKTDYE 231 (234)
Q Consensus 202 -~a~di~~~a~el~~lr~~i~~iya~~TG~~ 231 (234)
+.++-+..-+.|+.+.+.+.+..++.-|.+
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~ 110 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLS 110 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 123334444556667777777777766654
No 52
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=95.40 E-value=0.09 Score=46.85 Aligned_cols=88 Identities=20% Similarity=0.185 Sum_probs=60.4
Q ss_pred EEECcc----cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC-------CCccH--------------HHHHHHHHHh
Q 026750 100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG-------GDVTP--------------TLAIYDTMQS 153 (234)
Q Consensus 100 IfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG-------G~v~a--------------glaIyD~m~~ 153 (234)
|.|+.+ ++.++..++.+.+..++.++ ++. |.+.+.| +|+.. ...++..|..
T Consensus 16 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (261)
T PRK03580 16 ITLDRPKANAIDAKTSFAMGEVFLNFRDDP---ELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFD 92 (261)
T ss_pred EEECCccccCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHh
Confidence 445544 56677777777777766433 232 3333333 33321 1234566778
Q ss_pred cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL 192 (234)
Q Consensus 154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMI 192 (234)
++.||.+.+.|.|.+.|.-|++++|- |++.++++|-+
T Consensus 93 ~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~ 129 (261)
T PRK03580 93 LDKPVIAAVNGYAFGGGFELALAADF--IVCADNASFAL 129 (261)
T ss_pred CCCCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeC
Confidence 89999999999999999999999994 99998888765
No 53
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=95.39 E-value=0.13 Score=45.72 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=66.5
Q ss_pred EEECcc----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH-----------------HHHHHHHH
Q 026750 100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT-----------------LAIYDTMQ 152 (234)
Q Consensus 100 IfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag-----------------laIyD~m~ 152 (234)
|.|+.+ ++.++..++.+.|..++.+++.+ .|.|.+.| +|+..- ..+++.|.
T Consensus 17 itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr--~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (257)
T PRK06495 17 VTLDNPPVNALSRELRDELIAVFDEISERPDVR--VVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIR 94 (257)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHH
Confidence 445554 67777888888888776433222 23334444 333210 12455677
Q ss_pred hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCcc
Q 026750 153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA 199 (234)
Q Consensus 153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~ 199 (234)
.++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+-...-|.
T Consensus 95 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl 139 (257)
T PRK06495 95 ECAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGL 139 (257)
T ss_pred hCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCc
Confidence 888999999999999999999999994 999999988776555444
No 54
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=95.33 E-value=0.13 Score=45.46 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=62.3
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH--------------HHHHHHHHHhcCCCeEEEEccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP--------------TLAIYDTMQSLKSPVGTHCVGF 165 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a--------------glaIyD~m~~~~~~V~Tv~~G~ 165 (234)
++.++.+++.+.+..++.++..+- +.|.+ .|+++.. ...++..|..++.||.+.+.|.
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~--vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 107 (251)
T PRK06023 30 ITRAMYATMAKALKAADADDAIRA--HVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGL 107 (251)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 677777888887777764332222 22233 3344321 1235567888899999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|...|.-|.+++|- |++.++++|.+....-|
T Consensus 108 a~GgG~~la~acD~--ria~~~a~f~~pe~~~G 138 (251)
T PRK06023 108 AIGIGTTIHLHCDL--TFASPRSLFRTPFVDLA 138 (251)
T ss_pred eecHHHHHHHhCCE--EEEeCCCEecCcccccC
Confidence 99999999999994 99999999887554433
No 55
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=95.32 E-value=0.12 Score=46.11 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=61.8
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a---------------glaIyD~m~~~~~~V~Tv~~ 163 (234)
++.+...++.+.+..++.++..+ .|.|-+.| +|+.. ...+++.|...+.||.+.+-
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 108 (256)
T PRK06143 31 LGTPVILALTQALRWLAADPDVR--VLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIP 108 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcE--EEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67788888888888877543222 33444433 33321 12256677788999999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
|.|.+.|.-|.++||- |++.++++|.+=..
T Consensus 109 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~ 138 (256)
T PRK06143 109 GWCLGGGLELAAACDL--RIAAHDAQFGMPEV 138 (256)
T ss_pred CEEeehhHHHHHhCCE--EEecCCCEEeCCcc
Confidence 9999999999999994 99999988876333
No 56
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=95.29 E-value=0.059 Score=47.12 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=67.1
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCc---------------------cHHHHHHHHHHhcCCCeEEEEcc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV---------------------TPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v---------------------~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
++.+...++...|..++.++..+ .+.|.+.|+.. .....++..|..++.||.+.+.|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 67788899999999888755434 45555554333 22334677888899999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.|.+.|..+++++| -|++.++++|-+-...-|
T Consensus 100 ~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G 131 (245)
T PF00378_consen 100 HAVGGGFELALACD--FRIAAEDAKFGFPEVRLG 131 (245)
T ss_dssp EEETHHHHHHHHSS--EEEEETTTEEETGGGGGT
T ss_pred cccccccccccccc--eEEeecccceeeeecccC
Confidence 99999999999999 599999999655444333
No 57
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=95.28 E-value=0.12 Score=46.06 Aligned_cols=89 Identities=10% Similarity=0.089 Sum_probs=62.3
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeCC------CCCccH--------------H-------HHHHHHHHhcCCC
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGP------GGDVTP--------------T-------LAIYDTMQSLKSP 157 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSP------GG~v~a--------------g-------laIyD~m~~~~~~ 157 (234)
++.++..++.+.+..++.+++ ++. |.|.+- |+++.. + ..+++.|..++.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~--~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 105 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKA--EVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP 105 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCC--ceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 667777778887777654322 132 333333 344321 1 1255677888999
Q ss_pred eEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 158 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 158 V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|.+.+.|.|...|.-|++++|- |++.++++|-+..+.-|
T Consensus 106 vIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG 144 (266)
T PRK05981 106 IVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIG 144 (266)
T ss_pred EEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcC
Confidence 9999999999999999999994 99999999887665533
No 58
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=95.26 E-value=0.12 Score=45.99 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=59.5
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH----------H--------HHHHHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP----------T--------LAIYDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a----------g--------laIyD~m~~~~~~V~Tv 161 (234)
++.++..++.+.|..++.++..+ .|.|.+.| +|+.. . ..+++.|+.++.||.+.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVR--VVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGR 106 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeE--EEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 56677777777777665432222 23334433 44321 0 12567788899999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
+.|.|.+.|.-|++++|- |++.++++|-+-..
T Consensus 107 v~G~a~GgG~~lala~D~--ria~~~a~f~~pe~ 138 (262)
T PRK07468 107 IQGQAFGGGVGLISVCDV--AIAVSGARFGLTET 138 (262)
T ss_pred ECCEEEhHHHHHHHhCCE--EEEeCCCEEeCchh
Confidence 999999999999999994 99999888766443
No 59
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=95.25 E-value=0.15 Score=45.64 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=61.3
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccH-------------HHHHHHHHHhcCCCeEEEEcccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTP-------------TLAIYDTMQSLKSPVGTHCVGFA 166 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~a-------------glaIyD~m~~~~~~V~Tv~~G~A 166 (234)
++.++.+++.+.|..++.++..+ .|.|. |.|+|+.. ...+++.|..++.||.+.+.|.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a 105 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVD--VVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAA 105 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 67788888888888776543222 23333 34455432 12456778889999999999999
Q ss_pred ccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 167 YHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 167 aS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
.+.|.-|++++|- |++.++++|-+=
T Consensus 106 ~GgG~~lalacD~--~ia~~~a~f~~p 130 (258)
T PRK06190 106 VTGGLELALACDI--LIASERARFADT 130 (258)
T ss_pred ecHHHHHHHhCCE--EEEeCCCEEECc
Confidence 9999999999994 999998888653
No 60
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=95.24 E-value=0.13 Score=45.56 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=62.4
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccH-------------HHHHHHHHHhcCCCeEEEEcccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTP-------------TLAIYDTMQSLKSPVGTHCVGFA 166 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~a-------------glaIyD~m~~~~~~V~Tv~~G~A 166 (234)
++.++..++.+.+..++.+++.+ .|.|. |.|+|+.. ...+++.|..++.||.+.+.|.|
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 103 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIG--VCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYA 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcE--EEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 56777778888877776433222 23333 33444422 12356677888999999999999
Q ss_pred ccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 167 aS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.+.|.-|++++|- |++.++++|.+-...-|
T Consensus 104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 133 (255)
T PRK09674 104 LGAGCELALLCDI--VIAGENARFGLPEITLG 133 (255)
T ss_pred ehHHHHHHHhCCE--EEecCCCEEeCchhhcC
Confidence 9999999999994 99999988877554433
No 61
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=95.22 E-value=0.14 Score=45.42 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=61.8
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH----------------------HHHHHHHHhcCCC
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT----------------------LAIYDTMQSLKSP 157 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag----------------------laIyD~m~~~~~~ 157 (234)
++.++.+++.+.+..++.++..+ .|.|.+. |+|+... ..+++.|+.++.|
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp 104 (262)
T PRK07509 27 LDFAMFEELIATIKRLKKDRGIR--AVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVP 104 (262)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCe--EEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 67788888888888777543222 2333433 4443210 0133456788999
Q ss_pred eEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 158 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 158 V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
|.+.+.|.|...|.-|++++|- |++.++++|-+....
T Consensus 105 vIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~ 141 (262)
T PRK07509 105 VIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAK 141 (262)
T ss_pred EEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhc
Confidence 9999999999999999999994 999999988876643
No 62
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=95.10 E-value=0.14 Score=45.46 Aligned_cols=86 Identities=13% Similarity=0.194 Sum_probs=59.8
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC-------CCCccH--------------HHHHHHHHHhcCCCeEEEEcc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-------GGDVTP--------------TLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-------GG~v~a--------------glaIyD~m~~~~~~V~Tv~~G 164 (234)
++.++..++...|..++.+++.+ .|.|.+. |+|+.. ...+++.|..++.||.+.+.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 103 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIG--VIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQG 103 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 56677777777777766433222 2223333 444332 012566778889999999999
Q ss_pred ccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
.|.+.|.-|++++|- |++.++++|-+=.+
T Consensus 104 ~a~GgG~~lal~cD~--~ia~~~a~f~~pe~ 132 (256)
T TIGR03210 104 YAIGGGNVLVTICDL--TIASEKAQFGQVGP 132 (256)
T ss_pred EEehhhHHHHHhCCE--EEEeCCCEEecccc
Confidence 999999999999994 99999998877433
No 63
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=95.10 E-value=0.14 Score=45.80 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=59.7
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC--------CCCccHH--------------HHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP--------GGDVTPT--------------LAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP--------GG~v~ag--------------laIyD~m~~~~~~V~Tv~~ 163 (234)
++.++..++.+.+..++.+ +.+ .|.|.+. |+|+..- ..+++.|..++.||.+.+.
T Consensus 28 l~~~~~~~l~~al~~~~~d-~v~--~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~ 104 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNRP-EIR--VVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVE 104 (261)
T ss_pred CCHHHHHHHHHHHHHHhcC-Cce--EEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 6778888888888877643 222 2344443 3343210 1356667888999999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDS 194 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHq 194 (234)
|.|...|.-|++++|- |++.+.++|.+=.
T Consensus 105 G~a~GgG~~lalacD~--~ia~~~a~f~~pe 133 (261)
T PRK11423 105 GSVWGGAFELIMSCDL--IIAASTSTFAMTP 133 (261)
T ss_pred cEEechHHHHHHhCCE--EEecCCCEecCch
Confidence 9999999999999994 8998888876533
No 64
>PLN02600 enoyl-CoA hydratase
Probab=95.10 E-value=0.15 Score=45.21 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=58.9
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC-------CCCccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-------GGDVTP---------------TLAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-------GG~v~a---------------glaIyD~m~~~~~~V~Tv~~ 163 (234)
++.++.+++.+.+..++.++..+- |.|-+. |+|+.. ...+++.|..++.||.+.+.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~--vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 96 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARV--VMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE 96 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceE--EEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 577777888888877764332222 233333 344321 01244566778999999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
|.|.+.|.-|.+++|- |++.++++|.+-
T Consensus 97 G~a~GgG~~lala~D~--~ia~~~a~f~~p 124 (251)
T PLN02600 97 GAALGGGLELALSCDL--RICGEEAVFGLP 124 (251)
T ss_pred CeecchhHHHHHhCCE--EEeeCCCEEeCc
Confidence 9999999999999994 999999988773
No 65
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=95.09 E-value=0.13 Score=46.27 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
+++.|..++.||.+.+.|.|.+.|..|++++|- |++.++++|.+-...
T Consensus 103 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~ 150 (275)
T PLN02664 103 AITAIEQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVD 150 (275)
T ss_pred HHHHHHhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHh
Confidence 456677889999999999999999999999994 999999988774443
No 66
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=95.06 E-value=0.15 Score=49.13 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=64.8
Q ss_pred CcEEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccHH------------H----HHH-
Q 026750 97 ERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTPT------------L----AIY- 148 (234)
Q Consensus 97 ~RiIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~ag------------l----aIy- 148 (234)
-++|.|+-+ ++.++..++...|..++.++..+ .+.|.+ -|||+.+- . ..|
T Consensus 52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vr--vVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~ 129 (407)
T PLN02851 52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIG--FVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYK 129 (407)
T ss_pred EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHH
Confidence 346778876 78889999999998887544332 233344 45665321 1 122
Q ss_pred --HHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 149 --DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 149 --D~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
..|..++.||.+.+.|.|.+.|.-|.++|+- |++.++++|-+=..
T Consensus 130 l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~ 176 (407)
T PLN02851 130 FVYLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEV 176 (407)
T ss_pred HHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchh
Confidence 2345678999999999999999999999973 77777666655333
No 67
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=95.02 E-value=0.17 Score=45.04 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=58.4
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH-------------HHHHHHHHHhcCCCeEEEEcccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP-------------TLAIYDTMQSLKSPVGTHCVGFA 166 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a-------------glaIyD~m~~~~~~V~Tv~~G~A 166 (234)
++.++..++.+.+..++.+++.+- |.|-+ .|+|+.. ...+++.|..++.||.+.+-|.|
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 109 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRA--IVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYA 109 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeE--EEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 677788888888887764332222 22333 3344321 11245667788999999999999
Q ss_pred ccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 167 YHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 167 aS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
.+.|.-|++++|- |++.++++|.+=
T Consensus 110 ~GgG~~lalacD~--ria~~~a~f~~p 134 (261)
T PRK08138 110 LGGGCELAMHADI--IVAGESASFGQP 134 (261)
T ss_pred EcHHHHHHHhCCE--EEecCCCEeeCc
Confidence 9999999999984 888888777653
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=95.02 E-value=0.15 Score=45.23 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=61.7
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH------------HHHHHHHHhcCCCeEEEEccccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT------------LAIYDTMQSLKSPVGTHCVGFAY 167 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag------------laIyD~m~~~~~~V~Tv~~G~Aa 167 (234)
++.+..+++.+.+..++.++..+ .|.|-+. |+++..- ..++..|..++.||.+.+.|.|.
T Consensus 29 l~~~~~~~L~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 106 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDPRYK--VVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAI 106 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCcee
Confidence 66777788888877776433222 2333343 4543321 24667788899999999999999
Q ss_pred cHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 168 HLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 168 S~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
..|..|.+++|- |++.++++|-+....
T Consensus 107 GgG~~lal~cD~--~ia~~~a~f~~pe~~ 133 (249)
T PRK07110 107 GGGLVLGLYADI--VVLSRESVYTANFMK 133 (249)
T ss_pred chHHHHHHhCCE--EEEeCCCEecCchhc
Confidence 999999999994 999999887664433
No 69
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=95.02 E-value=0.19 Score=45.15 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=57.2
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeC------CCCCccHH----------------------HHHHHHHHhcCC
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYING------PGGDVTPT----------------------LAIYDTMQSLKS 156 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INS------PGG~v~ag----------------------laIyD~m~~~~~ 156 (234)
++.++..++.+.+..++.++ ++. |.|.+ .|+|+... ..+++.|..++.
T Consensus 34 l~~~~~~~L~~~l~~~~~d~---~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 110 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDN---SVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQ 110 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 66677777777777776433 232 23333 33443210 124456778899
Q ss_pred CeEEEEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750 157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL 192 (234)
Q Consensus 157 ~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMI 192 (234)
||.+.+.|.|.+.|.-|++++|- |++.++++|.+
T Consensus 111 PvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~ 144 (276)
T PRK05864 111 PVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRA 144 (276)
T ss_pred CEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecC
Confidence 99999999999999999999994 99998888764
No 70
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=95.00 E-value=0.15 Score=46.22 Aligned_cols=86 Identities=7% Similarity=0.007 Sum_probs=59.7
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeC--------CCCCccHH-----------------HHHHHHHHhcCCCeEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYING--------PGGDVTPT-----------------LAIYDTMQSLKSPVGT 160 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS--------PGG~v~ag-----------------laIyD~m~~~~~~V~T 160 (234)
++.++..++.+.|..++.++..+- |.|-+ .|+|+..- ..+++.|..++.||.+
T Consensus 35 l~~~~~~eL~~al~~~~~d~~vr~--vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 35 MTLAMWRSLDDALTALENDPTVRG--VVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCHHHHHHHHHHHHHHHcCCCceE--EEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 667777888888887775433222 22333 33343210 0144567788899999
Q ss_pred EEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
.+.|.|...|.-|++++|- |++.++++|-+-..
T Consensus 113 aV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~ 145 (278)
T PLN03214 113 AIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEV 145 (278)
T ss_pred EEcCcccchHHHHHHhCCE--EEecCCCEecCcHH
Confidence 9999999999999999994 99999988776433
No 71
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=94.89 E-value=0.2 Score=44.48 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=61.7
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a---------------glaIyD~m~~~~~~V~Tv~~ 163 (234)
++.++..++.+.+..++.++.. -.|.|.+.| +|+.. ...+++.|..++.||.+.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v--~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNV--YAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCc--EEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 5777778888877776643322 234445545 33311 12356678888999999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
|.|.+.|.-|++++|- |++.++++|.+-...
T Consensus 106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~ 136 (260)
T PRK05809 106 GFALGGGCELSMACDI--RIASEKAKFGQPEVG 136 (260)
T ss_pred CeeecHHHHHHHhCCE--EEeeCCCEEeCcccc
Confidence 9999999999999994 999999888775443
No 72
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=94.88 E-value=0.17 Score=45.94 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
+++.|...+.||.+.+.|.|.+.|.-|++++|- |++.++++|-+....
T Consensus 105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~ 152 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGR 152 (296)
T ss_pred HHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhh
Confidence 456677889999999999999999999999994 999999998876554
No 73
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=94.77 E-value=0.18 Score=44.85 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=61.7
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a---------------glaIyD~m~~~~~~V~Tv~~ 163 (234)
++.++..++...+..++.++.. -.|.|.+-| +|+.. ...+++.|..++.||.+.+.
T Consensus 26 l~~~~~~~l~~al~~~~~d~~v--rvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDV--YALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCc--eEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6777888888888777654322 234444444 33321 11245667788999999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
|.|.+.|.-|++++|- |++.++++|-+-...
T Consensus 104 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~ 134 (258)
T PRK09076 104 GYAMGGGLECALACDI--RIAEEQAQMALPEAS 134 (258)
T ss_pred CEEecHHHHHHHhCCE--EEecCCCEeeCcccc
Confidence 9999999999999994 999999888764433
No 74
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=94.76 E-value=0.22 Score=44.18 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=58.9
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccH-------------H-----HHHHHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTP-------------T-----LAIYDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~a-------------g-----laIyD~m~~~~~~V~Tv 161 (234)
++.++..++.+.+..++.++ .+ .|.|.+. |+|+.. . -.+++.|..++.||.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 99 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-AR--ALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA 99 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cE--EEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67777888888888776433 32 2333333 343321 0 11345677889999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
+.|.|.+.|.-|++++|- |++.++++|.+-
T Consensus 100 v~G~a~GgG~~lala~D~--ria~~~a~f~~p 129 (256)
T TIGR02280 100 VNGVAAGAGANLALACDI--VLAAESARFIQA 129 (256)
T ss_pred ECCeeehHHHHHHHhCCE--EEecCCCEEeCh
Confidence 999999999999999994 999999988753
No 75
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=94.73 E-value=0.24 Score=44.12 Aligned_cols=47 Identities=21% Similarity=0.107 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
+++.|..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+=..
T Consensus 84 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~ 130 (255)
T PRK08150 84 VFDKIQYGRVPVIAALHGAVVGGGLELASAAHI--RVADESTYFALPEG 130 (255)
T ss_pred HHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCE--EEEeCCCEEecccc
Confidence 566777889999999999999999999999994 99999988876433
No 76
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=94.69 E-value=0.28 Score=43.37 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=60.5
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccHH---------------HHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTPT---------------LAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~ag---------------laIyD~m~~~~~~V~Tv~~ 163 (234)
++.++..++.+.+..++.++ ++. +.|.+.| +|+..- ...+..|..++.||.+.+.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 103 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEADP---DVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN 103 (249)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 56778888888888776533 333 3334443 443211 1234456678899999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
|.|.+.|.-|++++|- |++.++++|.+....
T Consensus 104 G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~ 134 (249)
T PRK05870 104 GAAVGAGLNLALAADV--RIAGPKALFDARFQK 134 (249)
T ss_pred CEeEchhHHHHHhCCE--EEEcCCCEEeCcccc
Confidence 9999999999999994 999999988765443
No 77
>PLN02921 naphthoate synthase
Probab=94.64 E-value=0.28 Score=45.76 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=68.9
Q ss_pred EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEE-e-------CCCCCccHH----------------HHHHH
Q 026750 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI-N-------GPGGDVTPT----------------LAIYD 149 (234)
Q Consensus 99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-N-------SPGG~v~ag----------------laIyD 149 (234)
+|.|+.+ ++.++..++.+.+..++.++ +|.+.| - |.||++..- ..+++
T Consensus 79 ~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~---~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~ 155 (327)
T PLN02921 79 KITINRPERRNAFRPRTVKELQRAFNDARDDS---SVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQI 155 (327)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCC---CceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHH
Confidence 3556654 77888888998888876533 343333 3 344554310 12455
Q ss_pred HHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 150 ~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.|..++.||.+.+.|.|.+.|..|.+++| -|++.++++|.+..+..|
T Consensus 156 ~l~~~~kPvIAaVnG~a~GGG~~LalacD--~riA~~~A~f~~pe~~~G 202 (327)
T PLN02921 156 QIRRLPKPVIAMVAGYAVGGGHILHMVCD--LTIAADNAVFGQTGPKVG 202 (327)
T ss_pred HHHhCCCCEEEEECCEEecHHHHHHHhCC--EEEEeCCCEEeCcccccC
Confidence 67788999999999999999999999999 499999999988766544
No 78
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=94.63 E-value=0.26 Score=43.65 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=58.6
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH-------------------HHHHHHHHHhcCCCeEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP-------------------TLAIYDTMQSLKSPVGT 160 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a-------------------glaIyD~m~~~~~~V~T 160 (234)
++.++..++.+.+..++..+..+ .|.|.+.| +|+.. ...+++.|..++.||.+
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVR--FLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 56677777777777766433222 23345444 33321 12344567788999999
Q ss_pred EEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750 161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL 192 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMI 192 (234)
.+.|.|...|..|++++|- |++.++++|.+
T Consensus 104 av~G~a~GgG~~lala~D~--ria~~~a~f~~ 133 (255)
T PRK07260 104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQ 133 (255)
T ss_pred EecCeeehhhHHHHHhCCE--EEEeCCCEEec
Confidence 9999999999999999995 99999998775
No 79
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=94.61 E-value=0.23 Score=44.19 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=42.8
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
+++.|..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+-...-|
T Consensus 89 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 138 (259)
T TIGR01929 89 VQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVG 138 (259)
T ss_pred HHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCcccccc
Confidence 566778889999999999999999999999994 99999999888655433
No 80
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=94.54 E-value=0.27 Score=44.06 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=58.3
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH-----------------HHHHHHHHhcCCCeEEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT-----------------LAIYDTMQSLKSPVGTHC 162 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag-----------------laIyD~m~~~~~~V~Tv~ 162 (234)
++.+...++.+.|..++.++..+ .|.|.+.| +++..- ..++..|..++.||.+.+
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 113 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVR--VVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAI 113 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCce--EEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 67778888888888877543222 23334444 443210 123345667789999999
Q ss_pred ccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750 163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIAL 192 (234)
Q Consensus 163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMI 192 (234)
.|.|.+.|.-|++++|- |++.++++|-+
T Consensus 114 ~G~a~GgG~~lalacD~--ria~~~a~f~~ 141 (268)
T PRK07327 114 HGPAVGAGLVAALLADI--SIAAKDARIID 141 (268)
T ss_pred cCeeeehhhHHHHhCCE--EEecCCCEEeC
Confidence 99999999999999994 89999888765
No 81
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=94.54 E-value=0.23 Score=44.46 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=62.5
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccH--------------------------HHHHHHHHH
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTP--------------------------TLAIYDTMQ 152 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~a--------------------------glaIyD~m~ 152 (234)
++.+...++.+.+..++.++ +|. |.|.+.| +|+.. ...+++.|.
T Consensus 30 l~~~~~~~l~~~l~~~~~d~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 106 (272)
T PRK06142 30 MNPAFWSELPEIFRWLDADP---EVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVA 106 (272)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 77888888888888776433 333 3334444 44321 012445677
Q ss_pred hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.++.||.+.+.|.|.+.|.-|++++|- |++.++++|-+....-|
T Consensus 107 ~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 150 (272)
T PRK06142 107 DCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLG 150 (272)
T ss_pred hCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhC
Confidence 889999999999999999999999995 99999988766544433
No 82
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=94.52 E-value=0.2 Score=44.46 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=58.7
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH--------------H-----HHHHHHHHhcCCCeE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP--------------T-----LAIYDTMQSLKSPVG 159 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a--------------g-----laIyD~m~~~~~~V~ 159 (234)
++.++..++.+.+..++.++..+ .|.|-+.| +|+.. . ..+++.|..++.||.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESVR--AVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcE--EEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 67777888888887776433222 23334433 33321 0 124556777899999
Q ss_pred EEEccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 160 Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
+.+.|.|.+.|.-|++++|- |++.++++|.+=
T Consensus 105 aav~G~a~GgG~~lal~cD~--ria~~~a~f~~p 136 (260)
T PRK05980 105 AAVNGLAFGGGCEITEAVHL--AIASERALFAKP 136 (260)
T ss_pred EEEcCEEEhhhhHHhHhCCE--EEecCCCEecCc
Confidence 99999999999999999994 899888887663
No 83
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=94.48 E-value=0.26 Score=43.79 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=62.2
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCCC-------CccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG-------DVTP---------------TLAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG-------~v~a---------------glaIyD~m~~~~~~V~Tv~~ 163 (234)
++.++..++.+.+..++.++..+ .|.|.+.|+ |+.. ...+++.|..++.||.+.+.
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVR--VVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeE--EEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 67788888888888776533222 344455443 3221 01245667788999999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
|.|...|.-|.+++|- |++.++++|.+-...
T Consensus 106 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~ 136 (260)
T PRK07657 106 GIALGGGLELALACDF--RIAAESASLGLTETT 136 (260)
T ss_pred CEeechHHHHHHhCCE--EEeeCCCEEcCchhc
Confidence 9999999999999994 999999888765444
No 84
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=94.40 E-value=0.4 Score=42.58 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=58.9
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccHH-------------------HHHHHHHHhcCCCeEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPT-------------------LAIYDTMQSLKSPVGT 160 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~ag-------------------laIyD~m~~~~~~V~T 160 (234)
++.++..++.+.+..++ ++..+- |.|- |.|+|+..- ..+++.|..++.||.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARA--LLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIA 104 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceE--EEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 56777788888888776 433322 2222 333443210 0145567788999999
Q ss_pred EEccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
.+-|.|...|.-|++++| -|++.++++|.+-
T Consensus 105 av~G~a~GgG~~lalacD--~ria~~~a~f~~p 135 (262)
T PRK08140 105 AVNGVAAGAGANLALACD--IVLAARSASFIQA 135 (262)
T ss_pred EECCeeehhHHHHHHhCC--EEEecCCCEEecc
Confidence 999999999999999999 4999999988753
No 85
>PLN02888 enoyl-CoA hydratase
Probab=94.38 E-value=0.33 Score=43.54 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=60.1
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH------------HHHHHHHHhcCCCeEEEEccccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT------------LAIYDTMQSLKSPVGTHCVGFAY 167 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag------------laIyD~m~~~~~~V~Tv~~G~Aa 167 (234)
++.+...++.+.+..++.++..+ .+.|.+.| +|+... ..++..|..++.||.+.+.|.|.
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 111 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVK--VIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAI 111 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 67778888888888776533222 23344444 444311 12445677889999999999999
Q ss_pred cHHHHHHcCCCCCCEEeccCceEeee
Q 026750 168 HLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 168 S~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
+.|..|++++|- |++.++++|.+=
T Consensus 112 GgG~~lal~cD~--ria~~~a~f~~p 135 (265)
T PLN02888 112 TAGFEIALACDI--LVASRGAKFIDT 135 (265)
T ss_pred chHHHHHHhCCE--EEecCCCEecCc
Confidence 999999999994 999998887663
No 86
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=94.37 E-value=0.34 Score=42.99 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=61.0
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH----------------HHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT----------------LAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag----------------laIyD~m~~~~~~V~Tv~~ 163 (234)
++.++..++.+.+..++.++..+ .|.|.+. |+|+..- ..+++.|..++.||.+.+.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 25 LPSAGWFALADAITAAGADPDTR--VVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeE--EEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 66777788888887776443222 2333433 4554320 1245567788999999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
|.|.+.|.-|+++||- |++.++++|.+=...
T Consensus 103 G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~ 133 (249)
T PRK07938 103 GFCLGGGIGLVGNADV--IVASDDATFGLPEVD 133 (249)
T ss_pred CEEeehHHHHHHhCCE--EEEeCCCEeeCccce
Confidence 9999999999999994 999999987764433
No 87
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=94.36 E-value=0.29 Score=46.70 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=63.5
Q ss_pred EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHHH-------------------HHH
Q 026750 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPTL-------------------AIY 148 (234)
Q Consensus 99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~agl-------------------aIy 148 (234)
+|.|+.+ ++.++...+.+.|..++.++..+ .|.|-+. |||+..-. .+.
T Consensus 21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~--~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~ 98 (381)
T PLN02988 21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVK--LVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLN 98 (381)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCee--EEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 4556655 67788889999998886543222 2334443 56654310 122
Q ss_pred HHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 149 D~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
..|..++.||.+.+.|.|.+.|.-|.++|+- |++.++++|-+=
T Consensus 99 ~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mP 141 (381)
T PLN02988 99 YVMATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMP 141 (381)
T ss_pred HHHHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeCh
Confidence 3566789999999999999999999999984 888888876653
No 88
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=94.34 E-value=0.25 Score=43.68 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=59.8
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH----------------HHHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP----------------TLAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a----------------glaIyD~m~~~~~~V~Tv~~ 163 (234)
++.+...++.+.+..++.++..+ .|.|.+ .|+|+.. ...+++.|..++.||.+.+.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVR--VVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 66777778887777776433222 233343 3454321 12356677788999999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDS 194 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHq 194 (234)
|.|.+.|.-|++++| -|++.++++|-+-.
T Consensus 103 G~a~GgG~~lalacD--~ria~~~a~f~~pe 131 (257)
T PRK07658 103 GAALGGGLELAMSCH--IRFATESAKLGLPE 131 (257)
T ss_pred CeeeeHHHHHHHhCC--EEEecCCCcccCcc
Confidence 999999999999998 49999888876644
No 89
>PRK08321 naphthoate synthase; Validated
Probab=94.33 E-value=0.37 Score=44.11 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=64.0
Q ss_pred EEECcc-----cChhhHHHHHHHHhcccccCCCCceEEE-----------EeCCCCCccH--------------------
Q 026750 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY-----------INGPGGDVTP-------------------- 143 (234)
Q Consensus 100 IfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~-----------INSPGG~v~a-------------------- 143 (234)
|-|+.+ ++.++..++.+.|..++.++..+-|.|. .=|.|+|+..
T Consensus 38 itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 117 (302)
T PRK08321 38 IAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPA 117 (302)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhh
Confidence 445544 6777778888888877654433323222 1255666431
Q ss_pred ---HH---HHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEec-cCceEeeeCC
Q 026750 144 ---TL---AIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAM-PLSRIALDSP 195 (234)
Q Consensus 144 ---gl---aIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~-PnAriMIHqP 195 (234)
.. .+++.|..++.||.+.+.|.|...|.-|++++|- |++. ++++|.+=..
T Consensus 118 ~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~ 174 (302)
T PRK08321 118 RAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDA 174 (302)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCcc
Confidence 01 2345677888999999999999999999999994 9998 5888876433
No 90
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=94.21 E-value=0.28 Score=44.60 Aligned_cols=51 Identities=10% Similarity=-0.118 Sum_probs=41.3
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCcc
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA 199 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~ 199 (234)
++..|..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+=...-|.
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl 160 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGI 160 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCc
Confidence 345577889999999999999999999999994 999999988753333333
No 91
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=94.20 E-value=0.42 Score=42.56 Aligned_cols=48 Identities=23% Similarity=0.040 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
+++.|..++.||.+.+.|.|...|.-|++++| -|++.++++|.+-...
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~ 142 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCD--IRIASETARFAESFVK 142 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhCC--EEEecCCCEEcccccc
Confidence 44567788899999999999999999999999 4999999988765444
No 92
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=94.18 E-value=0.45 Score=42.25 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=60.9
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH------------------HHHHHHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP------------------TLAIYDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a------------------glaIyD~m~~~~~~V~Tv 161 (234)
++.+...++.+.+..++.++.. =.|.|.+.| +|+.. ...++..|..++.||.+.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v--r~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSV--RAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIAR 105 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCe--EEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEE
Confidence 6667777777777776643322 123344444 33321 012455677889999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
+.|.|.+.|.-|++++|- |++.++++|.+-...-|
T Consensus 106 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 140 (262)
T PRK05995 106 VHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLG 140 (262)
T ss_pred ECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccc
Confidence 999999999999999994 99999998877544433
No 93
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=94.12 E-value=0.33 Score=43.44 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=57.0
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH------------------HHHHHHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP------------------TLAIYDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a------------------glaIyD~m~~~~~~V~Tv 161 (234)
++.++..++.+.+..++.++..+ .|.|-+ .|+|+.. ...++..|..++.||.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLR--FLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAV 107 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCee--EEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEE
Confidence 56667777777777666433222 122333 3344321 012445567788999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
+-|.|.+.|.-|++++|- |++.++++|.+=
T Consensus 108 V~G~a~GgG~~lal~~D~--~ia~~~a~f~~p 137 (265)
T PRK05674 108 VQGAAFGGALGLISCCDM--AIGADDAQFCLS 137 (265)
T ss_pred EcCEEEechhhHhhhcCE--EEEeCCCEEeCc
Confidence 999999999999999994 899999888773
No 94
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=94.09 E-value=0.34 Score=43.65 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=59.3
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH-------------------HHHHHHHHHhcCCCeEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP-------------------TLAIYDTMQSLKSPVGT 160 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a-------------------glaIyD~m~~~~~~V~T 160 (234)
++.++..++.+.+..++.++..+ .|.|.+.| +|+.. ...+++.|..++.||.+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 109 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAG--VLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIA 109 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67777777887777776433222 23334433 44321 01245567788999999
Q ss_pred EEccccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750 161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDS 194 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHq 194 (234)
.+.|.|...|.-|++++|- |++.++++|.+=.
T Consensus 110 av~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe 141 (275)
T PRK09120 110 MVNGWCFGGGFSPLVACDL--AIAADEAQFGLSE 141 (275)
T ss_pred EEcCEEechhHHHHHhCCE--EEEeCCcEecCCc
Confidence 9999999999999999994 9999988887633
No 95
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=93.93 E-value=0.47 Score=42.32 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=58.6
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC-------CCCccH----------------HHHHHHHHHhcCCCeEEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-------GGDVTP----------------TLAIYDTMQSLKSPVGTHC 162 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-------GG~v~a----------------glaIyD~m~~~~~~V~Tv~ 162 (234)
++.++..++.+.+..++.++..+ .|.|.+. |+|+.. ...+++.|..++.||.+.+
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~--~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 109 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIR--AVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAI 109 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56777888888888776433222 2333443 344321 0124455677889999999
Q ss_pred ccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750 163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIAL 192 (234)
Q Consensus 163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMI 192 (234)
-|.|.+.|.-|++++|- |++.++++|-+
T Consensus 110 ~G~a~GgG~~lala~D~--~ia~~~a~f~~ 137 (262)
T PRK06144 110 AGACVGGGAAIAAACDL--RIATPSARFGF 137 (262)
T ss_pred CCeeeehHHHHHHhCCE--EEecCCCEeec
Confidence 99999999999999994 99999998865
No 96
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=93.90 E-value=0.31 Score=44.47 Aligned_cols=44 Identities=9% Similarity=0.044 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL 192 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMI 192 (234)
++..|..++.||.+.+.|.|.+.|.-|+++||- |++.++++|-+
T Consensus 119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~ 162 (302)
T PRK08272 119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGY 162 (302)
T ss_pred HHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecC
Confidence 355667888999999999999999999999994 99999987754
No 97
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=93.90 E-value=0.34 Score=47.90 Aligned_cols=94 Identities=20% Similarity=0.202 Sum_probs=68.1
Q ss_pred CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCC----------CccHHHHHHHHHHhcCCCeEEEEccccccHHHH
Q 026750 103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG----------DVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGF 172 (234)
Q Consensus 103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG----------~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~asl 172 (234)
+|.++++.+..+...+..-+. ..-||..++||||= .+..+-.+++.+.....|..+++.|-+++.|.+
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 366777776666555543332 24689999999995 345666677777777899999999999998776
Q ss_pred HHcCC--CCCCEEeccCceEeeeCCCCc
Q 026750 173 LLAGG--EKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 173 IlaaG--~kgkR~a~PnAriMIHqP~~~ 198 (234)
.+++. .....++.|++++.+=.|.+.
T Consensus 406 am~~~~~~~d~~~a~p~a~~~v~~pe~a 433 (512)
T TIGR01117 406 AMCSKHLGADQVYAWPTAEIAVMGPAGA 433 (512)
T ss_pred HhccccCCCCEEEEcCCCeEeecCHHHH
Confidence 66531 122589999999999988764
No 98
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=93.87 E-value=0.48 Score=42.59 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=60.1
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeC-------CCCCccH----------------HHHHHHHHHhcCCCeEEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYING-------PGGDVTP----------------TLAIYDTMQSLKSPVGTHC 162 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS-------PGG~v~a----------------glaIyD~m~~~~~~V~Tv~ 162 (234)
++.++..++.+.|..++.++..+- |.|-+ .|+|+.. ...+++.|..++.||.+.+
T Consensus 37 l~~~~~~~l~~al~~~~~d~~vr~--vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDDNIGV--IILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMV 114 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceE--EEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEE
Confidence 567777777777777664332222 22222 3333321 1124566778899999999
Q ss_pred ccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
.|.|...|.-|++++| -|++.++++|-+=.+.
T Consensus 115 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~ 146 (273)
T PRK07396 115 AGYAIGGGHVLHLVCD--LTIAADNAIFGQTGPK 146 (273)
T ss_pred CCEEehHHHHHHHhCC--EEEeeCCcEEeccccc
Confidence 9999999999999999 4999999998875444
No 99
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=93.81 E-value=0.43 Score=45.90 Aligned_cols=94 Identities=10% Similarity=0.099 Sum_probs=66.2
Q ss_pred EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccHH--------------H--H---HH
Q 026750 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPT--------------L--A---IY 148 (234)
Q Consensus 99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~ag--------------l--a---Iy 148 (234)
+|-|+-+ ++.++..++.+.|..++.++..+ .+.|- |-|||+.+- + . +.
T Consensus 49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vr--vVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~ 126 (401)
T PLN02157 49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIG--FVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFI 126 (401)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCe--EEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 5667766 78888899999888877543322 23333 456766421 0 1 22
Q ss_pred HHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 149 D~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
..|..++.||.+.+.|.|.+.|.-|.++|+- |++.++++|-+=...
T Consensus 127 ~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~ 172 (401)
T PLN02157 127 YLLGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETI 172 (401)
T ss_pred HHHHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhh
Confidence 3477889999999999999999999999984 888888877664433
No 100
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=93.79 E-value=0.32 Score=44.51 Aligned_cols=48 Identities=13% Similarity=-0.023 Sum_probs=41.5
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
.+..|..++.||.+.+.|.|.+.|.-|.++||- |++.++++|-+-...
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~ 151 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSR 151 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccc
Confidence 345677889999999999999999999999994 999999998876554
No 101
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=93.75 E-value=0.49 Score=42.36 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=66.4
Q ss_pred EEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH----------H-------HHHHHH
Q 026750 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP----------T-------LAIYDT 150 (234)
Q Consensus 100 IfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a----------g-------laIyD~ 150 (234)
|.|+.+ ++.++..++.+.+..++.+++.+ .|.|.+.| +++.. . ..+++.
T Consensus 24 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (269)
T PRK06127 24 ITFNNPARHNAMSLDMWEALPQALAAAEDDDAIR--VVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAA 101 (269)
T ss_pred EEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcE--EEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 455544 67778888888888776543222 23344443 33321 0 124456
Q ss_pred HHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 151 m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+.....|
T Consensus 102 i~~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~G 147 (269)
T PRK06127 102 LADYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLG 147 (269)
T ss_pred HHhCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhC
Confidence 77889999999999999999999999994 99999999888655433
No 102
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=93.66 E-value=0.37 Score=44.99 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=58.8
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC-------CCccH------------H-------HHHHHHHHhcCCCe
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG-------GDVTP------------T-------LAIYDTMQSLKSPV 158 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG-------G~v~a------------g-------laIyD~m~~~~~~V 158 (234)
++.++..++.+.+..++.++ +|. +.|.+.| +++.. . ..++..|..++.||
T Consensus 27 l~~~m~~~L~~~l~~~~~d~---~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 103 (342)
T PRK05617 27 LSLEMIRAIDAALDAWEDDD---AVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPY 103 (342)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 66777777777777666432 333 3344444 33221 0 12445677888999
Q ss_pred EEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 159 ~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
.+.+-|.|.+.|.-|.+++| -|++.++++|.+=..
T Consensus 104 IAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe~ 138 (342)
T PRK05617 104 IALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPET 138 (342)
T ss_pred EEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeCCcc
Confidence 99999999999999999999 499998888876443
No 103
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=93.66 E-value=0.59 Score=41.56 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=58.9
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC-------CCCccHH------------HHHHHHHHhcCCCeEEEEcccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-------GGDVTPT------------LAIYDTMQSLKSPVGTHCVGFA 166 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-------GG~v~ag------------laIyD~m~~~~~~V~Tv~~G~A 166 (234)
++.++..++.+.+..++.++..+- |.|-+. |+|+... +.-+..+..++.||.+.+.|.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a 105 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWV--AIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVA 105 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEE--EEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEE
Confidence 667777888888877765433222 233333 3444221 1111223456789999999999
Q ss_pred ccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 167 aS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.+.|.-|.+++|- |++.++++|.+-...-|
T Consensus 106 ~GgG~~lalacD~--ria~~~a~f~~pe~~~G 135 (259)
T PRK06494 106 MGGGFELALACDL--IVAAENATFALPEPRVG 135 (259)
T ss_pred ecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence 9999999999994 99999998877554433
No 104
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=93.59 E-value=0.5 Score=41.90 Aligned_cols=84 Identities=13% Similarity=0.212 Sum_probs=57.1
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH-------------HHHHHHHHHhcCCCeEEEEcccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP-------------TLAIYDTMQSLKSPVGTHCVGFA 166 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a-------------glaIyD~m~~~~~~V~Tv~~G~A 166 (234)
++.++..++.+.+..++.++..+ .|.|-+.| +|+.. ...+++.|..++.||.+.+.|.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a 105 (257)
T PRK05862 28 LNDALMDELGAALAAFDADEGIG--AIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYA 105 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCee--EEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 56667777777777666433222 22223333 33321 12345677888999999999999
Q ss_pred ccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 167 YHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 167 aS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
...|.-|++++|- |++.++++|-+=
T Consensus 106 ~GgG~~lalacD~--~ia~~~a~f~~p 130 (257)
T PRK05862 106 LGGGCELAMMCDI--IIAADTAKFGQP 130 (257)
T ss_pred eHHHHHHHHHCCE--EEEeCCCEEeCc
Confidence 9999999999994 888888877653
No 105
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.48 E-value=0.11 Score=51.01 Aligned_cols=93 Identities=19% Similarity=0.226 Sum_probs=66.5
Q ss_pred cccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750 104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 173 (234)
Q Consensus 104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI 173 (234)
|.|+.+.+.....-+...+.. .-||....|+|| |-+..+-.+.+++...+.|+.|++.|-+.+.|.+-
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 567777666555544444432 358999999999 66788899999999999999999999999988877
Q ss_pred HcCCC--CCCEEeccCceEeeeCCCCc
Q 026750 174 LAGGE--KGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 174 laaG~--kgkR~a~PnAriMIHqP~~~ 198 (234)
+++.. ....++.|+|++-+-.|.+.
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~e~a 412 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGPEGA 412 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred hcccccchhhhhhhhcceeeecChhhh
Confidence 77651 22479999999999888765
No 106
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=93.45 E-value=0.71 Score=41.00 Aligned_cols=50 Identities=10% Similarity=-0.065 Sum_probs=42.0
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
++..|..++.||.+.+.|.|...|..|++++| -|++.++++|-+....-|
T Consensus 88 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G 137 (255)
T PRK07112 88 LWHRLATGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPFSLSELLFG 137 (255)
T ss_pred HHHHHHcCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEEeCchhhhc
Confidence 45567778899999999999999999999999 499999999877655434
No 107
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=93.39 E-value=0.56 Score=41.67 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=56.9
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCCC------CccH------------------HHHHHHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG------DVTP------------------TLAIYDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG------~v~a------------------glaIyD~m~~~~~~V~Tv 161 (234)
++.+...++...+..++.+++. -.+.|.+.|+ |+.. ...++..|..++.||.+.
T Consensus 30 l~~~~~~el~~~l~~~~~d~~v--r~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAADPAV--RAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCe--eEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5667777777777766543221 2233345443 3211 012445566778999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
+.|.|.+.|.-|+++||- |++.+.++|-+=
T Consensus 108 v~G~a~GgG~~lalacD~--ria~~~a~f~~p 137 (260)
T PRK07827 108 IDGHVRAGGFGLVGACDI--VVAGPESTFALT 137 (260)
T ss_pred EcCeeecchhhHHHhCCE--EEEcCCCEEeCc
Confidence 999999999999999994 899988877663
No 108
>PRK08788 enoyl-CoA hydratase; Validated
Probab=93.19 E-value=0.35 Score=44.28 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=56.4
Q ss_pred cChhhHHHHHHHHhccccc--CCCCceE-EEEeCC-------CCCccHH----------------HHHHHHHH------h
Q 026750 106 IDEEFSNQILATMLYLDSV--DDSKRVY-MYINGP-------GGDVTPT----------------LAIYDTMQ------S 153 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~--~~~k~I~-L~INSP-------GG~v~ag----------------laIyD~m~------~ 153 (234)
++.+...++.+.+..++.. ++..+|. |.|-+. |+|+... ..+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 6667778888888877640 0012343 334444 3333210 12344333 5
Q ss_pred cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL 192 (234)
Q Consensus 154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMI 192 (234)
.+.||.+.+.|.|.++|.-|++++|- |++.++++|-+
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~ 156 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGF 156 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeC
Confidence 67899999999999999999999994 99999987665
No 109
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.09 E-value=0.63 Score=44.35 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=63.8
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC-------CCccH------------------HHHHHHHHHhcCCCeE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG-------GDVTP------------------TLAIYDTMQSLKSPVG 159 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG-------G~v~a------------------glaIyD~m~~~~~~V~ 159 (234)
++.++..++...+..++.++ +|. +.|-+-| +++.+ ...+++.|..++.||.
T Consensus 52 ls~~ml~eL~~al~~~~~D~---dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI 128 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSDR---DVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI 128 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 78888889999888877533 233 2233333 43321 1135566778899999
Q ss_pred EEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 160 Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
+.+-|.|.+.|.-|.++||- |++.++++|-+-.+.-|
T Consensus 129 AAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlG 165 (360)
T TIGR03200 129 CRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHG 165 (360)
T ss_pred EEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccC
Confidence 99999999999999999994 99999998887555544
No 110
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=93.07 E-value=0.83 Score=39.82 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=58.3
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCcc--------------HHHHHHHHHHhcCCCeEEEEccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVT--------------PTLAIYDTMQSLKSPVGTHCVGF 165 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~--------------aglaIyD~m~~~~~~V~Tv~~G~ 165 (234)
++.++.+++.+.+..++ +.. . .|.|.+.| +|+. ....++..|...+.||.+.+.|.
T Consensus 26 l~~~~~~~l~~~l~~~~--~~~-~-vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE--DDR-A-VVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh--ccC-c-EEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 67777788888877765 222 2 24445444 3321 11234456667889999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccC-ceEeeeC
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPL-SRIALDS 194 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~Pn-AriMIHq 194 (234)
|.+.|..|++++|- |++.++ ++|.+-.
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe 129 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNE 129 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECch
Confidence 99999999999994 999998 8876643
No 111
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=92.90 E-value=0.54 Score=41.66 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=59.2
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccH---------------HHH-HHHHHHhcCCCeEEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTP---------------TLA-IYDTMQSLKSPVGTHC 162 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~a---------------gla-IyD~m~~~~~~V~Tv~ 162 (234)
++.++.+++.+.+..++.++ ++. |.|-+.| +|+.. ... +...|+.++.||.+.+
T Consensus 23 l~~~~~~~l~~~l~~~~~d~---~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 99 (255)
T PRK06563 23 FDSAMLDDLALALGEYEADD---ELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAV 99 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEE
Confidence 56677777777777665432 232 3333333 33321 011 1224667889999999
Q ss_pred ccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.|.|.+.|..|++++|- |++.++++|-+....-|
T Consensus 100 ~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G 133 (255)
T PRK06563 100 QGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRG 133 (255)
T ss_pred cCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcC
Confidence 99999999999999994 99999998877554433
No 112
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=92.89 E-value=1.1 Score=39.70 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=56.7
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEe-----CCCCCccH-----------------HHHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP-----------------TLAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-----SPGG~v~a-----------------glaIyD~m~~~~~~V~Tv~~ 163 (234)
++.+...++...+..++.++....+.|.=. |.|+|+.. ...+++.|..++.||.+.+.
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~ 102 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT 102 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 777777888888877764332122222212 23444321 01144557778899999999
Q ss_pred cccccHHHHHHcCCCCCCEEecc-CceEeeeC
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMP-LSRIALDS 194 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~P-nAriMIHq 194 (234)
|.|...|..|++++|- |++.+ .++|.+-.
T Consensus 103 G~a~GgG~~lalacD~--ria~~~~a~f~~pe 132 (239)
T PLN02267 103 GHASAAGFILALSHDY--VLMRKDRGVLYMSE 132 (239)
T ss_pred CcchHHHHHHHHHCCE--EEecCCCCeEeccc
Confidence 9999999999999984 88874 45665533
No 113
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=92.83 E-value=0.54 Score=44.61 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=65.6
Q ss_pred EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEE-EEeCCC------CCccHH----------H-------HHHH
Q 026750 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYM-YINGPG------GDVTPT----------L-------AIYD 149 (234)
Q Consensus 99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L-~INSPG------G~v~ag----------l-------aIyD 149 (234)
+|.|+.+ ++.++..++...|..++.++ +|.+ .|.+.| ||+..- . .+..
T Consensus 23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~---~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (379)
T PLN02874 23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDD---SVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCY 99 (379)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCC---CeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 4566655 67788888888888876533 3443 334443 443211 0 1123
Q ss_pred HHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 150 ~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.|..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+=...-|
T Consensus 100 ~i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iG 146 (379)
T PLN02874 100 HIHTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVG 146 (379)
T ss_pred HHHhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccC
Confidence 466788999999999999999999999994 99999988776544433
No 114
>PRK08139 enoyl-CoA hydratase; Validated
Probab=92.78 E-value=0.64 Score=41.61 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=61.8
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccH---------H-------HHHHHHHHhcCCCeEEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTP---------T-------LAIYDTMQSLKSPVGTHC 162 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~a---------g-------laIyD~m~~~~~~V~Tv~ 162 (234)
++.++..++.+.+..++.++ ++. |.|.+.| +|+.. . ..+++.|..++.||.+.+
T Consensus 35 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (266)
T PRK08139 35 LSEAMLAALQAALDAIAADP---SVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARV 111 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67778888888887776432 233 3334444 44321 0 124556778899999999
Q ss_pred ccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
.|.|...|.-|++++| -|++.++++|-+-...-|
T Consensus 112 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G 145 (266)
T PRK08139 112 HGIATAAGCQLVASCD--LAVAADTARFAVPGVNIG 145 (266)
T ss_pred CceeeHHHHHHHHhCC--EEEEeCCCEEeCcccCcC
Confidence 9999999999999999 499999998876554444
No 115
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=92.72 E-value=0.96 Score=40.24 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=59.7
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccHH----------------HHHHHHHHhcCCCeEEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTPT----------------LAIYDTMQSLKSPVGTHC 162 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~ag----------------laIyD~m~~~~~~V~Tv~ 162 (234)
++.++..++.+.+..++ ++ ++. |.|.+.| +|+..- ..++..|..++.||.+.+
T Consensus 30 l~~~~~~~l~~~l~~~~--d~--~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav 105 (260)
T PRK07659 30 LDEPMLKELLQALKEVA--ES--SAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI 105 (260)
T ss_pred CCHHHHHHHHHHHHHhc--CC--CeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 67788888888888773 22 233 4444444 443220 113344566789999999
Q ss_pred ccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
.|.|.+.|.-|++++|- |++.++++|-+....
T Consensus 106 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 137 (260)
T PRK07659 106 HGPAAGLGLSIALTADY--VIADISAKLAMNFIG 137 (260)
T ss_pred cCceecHHHHHHHhCCE--EEEcCCCEEcCchhh
Confidence 99999999999999994 999999987765543
No 116
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=92.34 E-value=1.1 Score=45.07 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=65.3
Q ss_pred cccChhhHHHHHHHHhcccccCCCCceEEEEeCCCC----------CccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750 104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG----------DVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 173 (234)
Q Consensus 104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG----------~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI 173 (234)
|.++.+.+.....-+..-+. . .=|+..++|+||- .+..+-.+.+++.....|..|+..|-|++.|.+-
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~-~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-R-GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-c-CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 45776655544333332222 2 3589999999994 4455566777777888999999999999999988
Q ss_pred HcCC--CCCCEEeccCceEeeeCCCCc
Q 026750 174 LAGG--EKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 174 laaG--~kgkR~a~PnAriMIHqP~~~ 198 (234)
+++. ...-.++.|+|++-+=.|.+.
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e~a 484 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGAQA 484 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHHHH
Confidence 8743 233578889999888777654
No 117
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=92.23 E-value=0.62 Score=41.25 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=66.6
Q ss_pred ccChhhHHHHHHHHhcccccCCCCceEEEE-eC------CCCCccHHH----------------HHHHHHHhcCCCeEEE
Q 026750 105 NIDEEFSNQILATMLYLDSVDDSKRVYMYI-NG------PGGDVTPTL----------------AIYDTMQSLKSPVGTH 161 (234)
Q Consensus 105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-NS------PGG~v~agl----------------aIyD~m~~~~~~V~Tv 161 (234)
.++.++..++.+.+..++.++ ++.+.| -+ -|+|+..-. .+...|..++.||.+.
T Consensus 28 al~~~~~~~l~~al~~~~~d~---~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 104 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADP---DVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAA 104 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCC---CeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEE
Confidence 577888888888888887543 233322 22 344544311 2566888889999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
+.|.|...|.-|++++|- |++.++++|-+....-|
T Consensus 105 v~G~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iG 139 (257)
T COG1024 105 VNGYALGGGLELALACDI--RIAAEDAKFGLPEVNLG 139 (257)
T ss_pred EcceEeechhhhhhcCCe--EEecCCcEecCcccccc
Confidence 999999999999999994 99999999999877644
No 118
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=91.59 E-value=1.2 Score=39.57 Aligned_cols=84 Identities=15% Similarity=0.072 Sum_probs=55.7
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccHHH-------H------HHHHHHhcCCCeEEEEcccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPTL-------A------IYDTMQSLKSPVGTHCVGFA 166 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~agl-------a------IyD~m~~~~~~V~Tv~~G~A 166 (234)
++.++..++.+.|..++.++..+ -|.|. |.|+|+..-. . ....+..++.||.+.+.|.|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr--~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a 104 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAAS--VAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYA 104 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEE
Confidence 56777777888877776433222 22333 3344443210 0 01112356789999999999
Q ss_pred ccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 167 YHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 167 aS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
...|.-|+++||- |++.++++|-+-
T Consensus 105 ~GgG~~lalacD~--~ia~~~a~f~~p 129 (254)
T PRK08259 105 VAGGLELALWCDL--RVAEEDAVFGVF 129 (254)
T ss_pred EhHHHHHHHhCCE--EEecCCCEecCc
Confidence 9999999999994 999999987653
No 119
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=91.13 E-value=1.2 Score=39.55 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=57.3
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHHH---------------H-H--HHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPTL---------------A-I--YDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~agl---------------a-I--yD~m~~~~~~V~Tv 161 (234)
++.++..++.+.+..++.++..+ .|.|.+.| +|+..-. . + ...+..++.||.+.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa 106 (263)
T PRK07799 29 LSTEMLRIMVDAWDRVDNDPDIR--SCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAA 106 (263)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEE
Confidence 66777777877777776443222 23334333 4332100 0 1 11134678999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
+.|.|.+.|.-|++++|- |++.++++|-+-...
T Consensus 107 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 139 (263)
T PRK07799 107 VEGPAIAGGTEILQGTDI--RVAGESAKFGISEAK 139 (263)
T ss_pred ECCeEeccHHHHHHhCCE--EEecCCCEecCcccc
Confidence 999999999999999994 999999987764443
No 120
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=91.02 E-value=0.71 Score=42.68 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=69.3
Q ss_pred ccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHH-------------------HHHHHHHHhcCCCeEEEEccc
Q 026750 105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT-------------------LAIYDTMQSLKSPVGTHCVGF 165 (234)
Q Consensus 105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ag-------------------laIyD~m~~~~~~V~Tv~~G~ 165 (234)
-++..+..++...+..++.++..+-|.|+ --|++.-+| +..++.+..++.||...+.|+
T Consensus 60 al~~~~m~eL~~A~~~~e~D~s~~viVlt--G~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~ 137 (290)
T KOG1680|consen 60 ALCRATMLELAEAFKDFESDDSVGVIVLT--GSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGF 137 (290)
T ss_pred cccHHHHHHHHHHHHHhhccCcccEEEEE--cCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeece
Confidence 35677888999999999877655544444 333332222 335667777899999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|-..|.-|.+.||- |+|.|+|.|+.-++..|
T Consensus 138 AlgGG~ELalmCDi--rva~~~Akfg~~~~~~G 168 (290)
T KOG1680|consen 138 ALGGGLELALMCDI--RVAGEGAKFGFFEIRMG 168 (290)
T ss_pred eeccchhhhhhcce--EeccCCCeecccccccC
Confidence 99999999999995 99999999999988755
No 121
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=90.95 E-value=0.32 Score=45.26 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=58.4
Q ss_pred CCceEEEEeCCCCCc-------cHHHHHHHHHH---hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 127 SKRVYMYINGPGGDV-------TPTLAIYDTMQ---SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 127 ~k~I~L~INSPGG~v-------~aglaIyD~m~---~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
.-||..+|++||-.. -.+-+|...+. ..+.||.++++|.-.|.|++-++-|++ -+++.||...+=.|.
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence 368999999999653 34556766554 557899999999999999999999995 799999999999998
Q ss_pred Cc
Q 026750 197 GA 198 (234)
Q Consensus 197 ~~ 198 (234)
|-
T Consensus 228 G~ 229 (317)
T COG0825 228 GC 229 (317)
T ss_pred hh
Confidence 75
No 122
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=90.90 E-value=1.2 Score=39.57 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=56.5
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHHH----------HHHHHH-HhcCCCeEEEEcccccc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPTL----------AIYDTM-QSLKSPVGTHCVGFAYH 168 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~agl----------aIyD~m-~~~~~~V~Tv~~G~AaS 168 (234)
++.++..++.+.|..++.++..+ .|.|.+. |+|+..-. .+...+ ..++.||.+.+.|.|.+
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 104 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLS--VGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALA 104 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEeh
Confidence 67788888888888876543222 2334443 34442210 111111 35678999999999999
Q ss_pred HHHHHHcCCCCCCEEeccCceEeee
Q 026750 169 LAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 169 ~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
.|.-|++++|- |++.++++|-+=
T Consensus 105 gG~~lalacD~--~ia~~~a~f~~p 127 (254)
T PRK08252 105 GGFELALACDL--IVAARDAKFGLP 127 (254)
T ss_pred HHHHHHHhCCE--EEEeCCCEEeCc
Confidence 99999999994 888888887653
No 123
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.26 E-value=1.8 Score=44.28 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=56.1
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccH----------------HHHHHHHHHhcCCCeEEEEc
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTP----------------TLAIYDTMQSLKSPVGTHCV 163 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~a----------------glaIyD~m~~~~~~V~Tv~~ 163 (234)
++.++..++.+.|..++.++..+- .|.+. |-|+|+.. ...++..|..++.||.+.+-
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~-VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVn 104 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRG-LVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIH 104 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceE-EEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 677777888888887764332222 22223 33455432 12356678888999999999
Q ss_pred cccccHHHHHHcCCCCCCEEeccCc
Q 026750 164 GFAYHLAGFLLAGGEKGNRSAMPLS 188 (234)
Q Consensus 164 G~AaS~aslIlaaG~kgkR~a~PnA 188 (234)
|.|.+.|.-|.++|| -|++.+++
T Consensus 105 G~a~GgG~~LaLacD--~ria~~~~ 127 (699)
T TIGR02440 105 GACLGGGLELALACH--SRVCSDDD 127 (699)
T ss_pred CEeecHHHHHHHhCC--EEEEcCCC
Confidence 999999999999999 48888764
No 124
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.07 E-value=1.8 Score=44.46 Aligned_cols=86 Identities=15% Similarity=0.150 Sum_probs=62.4
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH------------------HHHHHHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP------------------TLAIYDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a------------------glaIyD~m~~~~~~V~Tv 161 (234)
++.++..++.+.|..++.++..+ .+.|-|-| +|+.. +-.+++.|..++.||.+.
T Consensus 31 l~~~~~~eL~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAa 108 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQSSLK--GVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAA 108 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67778888888888876543322 33334433 34321 224667788889999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
+.|.|.+.|.-|+++|+ .|++.++++|-+=..
T Consensus 109 i~G~alGGGleLalacD--~ria~~~a~fglPEv 140 (714)
T TIGR02437 109 INGIALGGGCECVLATD--FRIADDTAKIGLPET 140 (714)
T ss_pred ECCeeecHHHHHHHhCC--EEEEeCCCEEecchh
Confidence 99999999999999999 499999988877443
No 125
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=89.55 E-value=1.4 Score=44.05 Aligned_cols=85 Identities=11% Similarity=-0.013 Sum_probs=56.5
Q ss_pred cChhhHHHHHHHHhcccc-cCCCCceEEEEe-----CCCCCccHH--------------H-----HHHHHHHhcCCCeEE
Q 026750 106 IDEEFSNQILATMLYLDS-VDDSKRVYMYIN-----GPGGDVTPT--------------L-----AIYDTMQSLKSPVGT 160 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~-~~~~k~I~L~IN-----SPGG~v~ag--------------l-----aIyD~m~~~~~~V~T 160 (234)
++.++..++.+.+..++. .+..+-|.|.=+ |.|+++..- . .+.+.|..++.||.+
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 677778888888887763 222222222111 344443210 0 144567778999999
Q ss_pred EEccccccHHHHHHcCCCCCCEEeccC--ceEee
Q 026750 161 HCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIAL 192 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG~kgkR~a~Pn--AriMI 192 (234)
.+-|.|.+.|..|.+++|- |++.++ ++|-+
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~ 160 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSL 160 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence 9999999999999999994 888876 55544
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=89.33 E-value=1.7 Score=43.53 Aligned_cols=83 Identities=11% Similarity=-0.025 Sum_probs=55.5
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEE-Ee-------CCCCCccHH-------------------HHHHHHHHhcCCCe
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMY-IN-------GPGGDVTPT-------------------LAIYDTMQSLKSPV 158 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~-IN-------SPGG~v~ag-------------------laIyD~m~~~~~~V 158 (234)
++.++..++.+.|..++..+ ++|.+. |- |.|+++... ..+++.|+.++.||
T Consensus 45 l~~~~l~eL~~al~~~~~~d--~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPv 122 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEH--PEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 56677777888887776222 234322 22 345554321 12445667889999
Q ss_pred EEEEccccccHHHHHHcCCCCCCEEeccC--ceEee
Q 026750 159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIAL 192 (234)
Q Consensus 159 ~Tv~~G~AaS~aslIlaaG~kgkR~a~Pn--AriMI 192 (234)
.+.+.|.|.+.|.-|.++||- |++.++ ++|-+
T Consensus 123 IAAVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~ 156 (546)
T TIGR03222 123 LAAVNGTCAGGGYELALACDE--IMLVDDRSSSVSL 156 (546)
T ss_pred EEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence 999999999999999999984 888876 44443
No 127
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.28 E-value=2 Score=44.00 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=60.5
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH------------------HHHHHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT------------------LAIYDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag------------------laIyD~m~~~~~~V~Tv 161 (234)
++.++..++.+.+..++.++..+ -+.|.+.| +|+..- ..+++.|..++.||.+.
T Consensus 31 l~~~~~~~L~~al~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 108 (715)
T PRK11730 31 LDRATLASLGEALDALEAQSDLK--GLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAA 108 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcE--EEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 57778888888888776533222 23344443 444210 12455677788999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
+-|.|...|.-|+++||- |++.++++|-+=..
T Consensus 109 v~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~ 140 (715)
T PRK11730 109 INGYALGGGCECVLATDY--RVASPDARIGLPET 140 (715)
T ss_pred ECCEeehHHHHHHHhCCE--EEEcCCCEEeCchh
Confidence 999999999999999994 99999888766443
No 128
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=88.65 E-value=3 Score=38.35 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=67.0
Q ss_pred EECcccChhhHHHHHHHHhccccc----CCCCceEEEEeCCCCCccHHHH-------HHHHHHhcC--CCeEEEEccc--
Q 026750 101 FIGQNIDEEFSNQILATMLYLDSV----DDSKRVYMYINGPGGDVTPTLA-------IYDTMQSLK--SPVGTHCVGF-- 165 (234)
Q Consensus 101 fL~g~Id~e~a~~iia~Ll~L~~~----~~~k~I~L~INSPGG~v~agla-------IyD~m~~~~--~~V~Tv~~G~-- 165 (234)
|.+|.+.+.....++..+.. ..+ ...-++.+.+.|.|+.+..+.. |+..+...+ .|+.+++.|-
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~-A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~g 148 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRL-AIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVG 148 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHH-HHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 56788888777777665543 322 1124899999999998877552 232222223 6999999999
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
|++.++++.+.++- .++.|.+++.+--|.
T Consensus 149 c~GG~a~~a~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 149 CFGGMGIAAGLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred cchHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence 78888888888984 789999999988774
No 129
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.60 E-value=3.6 Score=42.13 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=59.3
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE-EEEeCC-------CCCccH----------------HHHHHHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGP-------GGDVTP----------------TLAIYDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSP-------GG~v~a----------------glaIyD~m~~~~~~V~Tv 161 (234)
++.++..++.+.+..++.++ ++. +.|-+- |+|+.. ...+++.|..++.||.+.
T Consensus 31 l~~~~~~~L~~~l~~~~~d~---~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 107 (708)
T PRK11154 31 LKAEFAEQVRAILKQLREDK---ELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA 107 (708)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67778888888888776532 343 233333 344321 112567788899999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCc--eEeeeC
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLS--RIALDS 194 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnA--riMIHq 194 (234)
+.|.|.+.|.-|+++||- |++.+++ +|-+..
T Consensus 108 V~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe 140 (708)
T PRK11154 108 IHGACLGGGLELALACHY--RVCTDDPKTVLGLPE 140 (708)
T ss_pred ECCeeechHHHHHHhCCE--EEEeCCCCceEeCcc
Confidence 999999999999999994 8998875 555444
No 130
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=87.22 E-value=3.3 Score=38.59 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=68.1
Q ss_pred EECcccChhhHHHHHHHHhcccccCC----CCceEEEEeCCCCCccHHH-------HHHHHHHhcC--CCeEEEEccc--
Q 026750 101 FIGQNIDEEFSNQILATMLYLDSVDD----SKRVYMYINGPGGDVTPTL-------AIYDTMQSLK--SPVGTHCVGF-- 165 (234)
Q Consensus 101 fL~g~Id~e~a~~iia~Ll~L~~~~~----~k~I~L~INSPGG~v~agl-------aIyD~m~~~~--~~V~Tv~~G~-- 165 (234)
|++|.+.+.....+...+. +..+.. .-++.+++.|.|+-+.++. .|+..+...+ .|+.+++.|-
T Consensus 79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g 157 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG 157 (301)
T ss_pred ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 4688888877777766554 333332 2589999999999877544 2333333333 7999999998
Q ss_pred cccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~ 196 (234)
|++.++++.+.++- .++.+++++.+--|.
T Consensus 158 c~GG~a~~a~l~D~--iIm~~~a~iglaGP~ 186 (301)
T PRK07189 158 CFGGMGIAAALCSY--LIVSEEGRLGLSGPE 186 (301)
T ss_pred CcHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence 88999998888984 789999999988774
No 131
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=83.66 E-value=6.5 Score=36.28 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=65.7
Q ss_pred ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHH-------H---HHhcCCCeEEEEccccccHHH
Q 026750 102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYD-------T---MQSLKSPVGTHCVGFAYHLAG 171 (234)
Q Consensus 102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD-------~---m~~~~~~V~Tv~~G~AaS~as 171 (234)
++|.++...++.+...+..-.. . .-|+..+..|+|.-..+|..... . +.....|..++..|-++..++
T Consensus 132 ~gGSmg~~~geKi~r~~e~A~~-~-~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a 209 (285)
T TIGR00515 132 MGGSMGSVVGEKFVRAIEKALE-D-NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVS 209 (285)
T ss_pred cCCCccHHHHHHHHHHHHHHHH-c-CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence 4677777777777766554332 2 35889999999988777663321 2 222357999999999999888
Q ss_pred HHHc-CCCCCCEEeccCceEeeeCCC
Q 026750 172 FLLA-GGEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 172 lIla-aG~kgkR~a~PnAriMIHqP~ 196 (234)
..++ .|+- .++-|+|++.+--|.
T Consensus 210 as~a~~~D~--iia~p~A~ig~aGpr 233 (285)
T TIGR00515 210 ASFAMLGDL--NIAEPKALIGFAGPR 233 (285)
T ss_pred HHHHhCCCE--EEEECCeEEEcCCHH
Confidence 8775 6774 899999999887664
No 132
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=82.48 E-value=8.6 Score=35.59 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=64.7
Q ss_pred ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHH-------HHHH---HhcCCCeEEEEccccccHHH
Q 026750 102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI-------YDTM---QSLKSPVGTHCVGFAYHLAG 171 (234)
Q Consensus 102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaI-------yD~m---~~~~~~V~Tv~~G~AaS~as 171 (234)
++|.++...++.+...+..-. +. .-|+..+..|+|....+|..- ...+ .....|..+++.|-++..++
T Consensus 133 ~gGS~g~~~~eKi~r~~e~A~-~~-~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a 210 (292)
T PRK05654 133 MGGSMGSVVGEKIVRAVERAI-EE-KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 210 (292)
T ss_pred ccCCccHHHHHHHHHHHHHHH-Hc-CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence 467777777777766555433 23 357888889999887776532 2222 23357999999999999888
Q ss_pred HHHcC-CCCCCEEeccCceEeeeCCC
Q 026750 172 FLLAG-GEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 172 lIlaa-G~kgkR~a~PnAriMIHqP~ 196 (234)
..++. |+ -.++-|+|++.+--|.
T Consensus 211 as~a~~~D--~iia~p~A~ig~aGpr 234 (292)
T PRK05654 211 ASFAMLGD--IIIAEPKALIGFAGPR 234 (292)
T ss_pred HHHHHcCC--EEEEecCcEEEecCHH
Confidence 77765 66 3789999999887764
No 133
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=81.64 E-value=6.2 Score=40.81 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=59.9
Q ss_pred cChhhHHHHHHHHhcccccCCCCceE--EEEeCCC------CCccH----------------HHHHHHHHHhcCCCeEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVY--MYINGPG------GDVTP----------------TLAIYDTMQSLKSPVGTH 161 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~--L~INSPG------G~v~a----------------glaIyD~m~~~~~~V~Tv 161 (234)
++.++..++.+.|..++.++ ++. |.+.+.| +|+.. ...+++.|..++.||.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~---~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 114 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNE---AIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA 114 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 56677788888888776432 343 3445444 43321 124666788889999999
Q ss_pred EccccccHHHHHHcCCCCCCEEeccCc--eEeeeC
Q 026750 162 CVGFAYHLAGFLLAGGEKGNRSAMPLS--RIALDS 194 (234)
Q Consensus 162 ~~G~AaS~aslIlaaG~kgkR~a~PnA--riMIHq 194 (234)
+-|.|.+.|.-|.++|+ -|++.+++ +|-+..
T Consensus 115 v~G~a~GgG~eLALacD--~ria~~~a~a~fglpE 147 (737)
T TIGR02441 115 ISGSCLGGGLELALACH--YRIATKDRKTLLGLPE 147 (737)
T ss_pred ECCEeecHHHHHHHhCC--EEEEcCCCCCeEecch
Confidence 99999999999999999 49999885 454433
No 134
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=79.34 E-value=20 Score=36.26 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=62.2
Q ss_pred ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCcc---H------HH-HHHHH-HHhc--CCCeEEEEcccccc
Q 026750 102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT---P------TL-AIYDT-MQSL--KSPVGTHCVGFAYH 168 (234)
Q Consensus 102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~---a------gl-aIyD~-m~~~--~~~V~Tv~~G~AaS 168 (234)
++|-+++..++.++..+. +..+. .-|+..++.|+|+.+. . ++ .|+.. .+.. ..|..+++.|-|++
T Consensus 141 ~GGs~g~~~~~Ki~r~~e-lA~~~-~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~g 218 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQE-IAAQC-RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTA 218 (569)
T ss_pred cCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence 457777777777766554 33333 4689999999998762 1 11 24433 3323 46999999999999
Q ss_pred HHHHHHcCCCCCCEEec-cCceEeeeCC
Q 026750 169 LAGFLLAGGEKGNRSAM-PLSRIALDSP 195 (234)
Q Consensus 169 ~aslIlaaG~kgkR~a~-PnAriMIHqP 195 (234)
.++++.+.++. .++. +++++.+--|
T Consensus 219 GgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 219 GGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred HHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 99999888874 4444 5788888777
No 135
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=77.71 E-value=11 Score=33.91 Aligned_cols=77 Identities=21% Similarity=0.266 Sum_probs=52.1
Q ss_pred hHHHHHHHHhcccccCCCCceEEEEeCCCC---CccHHHHH----------HHHHHhcCCCeEEEEccccccHHHHHHcC
Q 026750 110 FSNQILATMLYLDSVDDSKRVYMYINGPGG---DVTPTLAI----------YDTMQSLKSPVGTHCVGFAYHLAGFLLAG 176 (234)
Q Consensus 110 ~a~~iia~Ll~L~~~~~~k~I~L~INSPGG---~v~aglaI----------yD~m~~~~~~V~Tv~~G~AaS~aslIlaa 176 (234)
.+..+.+.+ ...+..+|.+.+.+||- .-.+-+.| |+.-+....||.+.+.|.|.|.| ||.-+
T Consensus 51 lA~~V~~~i----~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGa-FLA~G 125 (234)
T PF06833_consen 51 LAKAVLDTI----RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGA-FLAHG 125 (234)
T ss_pred HHHHHHHHH----hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHH-HHHHH
Confidence 344444444 34568999999999993 33444444 55566677899999999999977 44443
Q ss_pred CCCCCEEeccCceEeee
Q 026750 177 GEKGNRSAMPLSRIALD 193 (234)
Q Consensus 177 G~kgkR~a~PnAriMIH 193 (234)
---.+-+++| -.|||
T Consensus 126 lqA~rl~AL~--ga~i~ 140 (234)
T PF06833_consen 126 LQANRLIALP--GAMIH 140 (234)
T ss_pred HHhcchhcCC--CCeee
Confidence 2223468888 56677
No 136
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=76.85 E-value=36 Score=34.18 Aligned_cols=89 Identities=10% Similarity=0.111 Sum_probs=64.4
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEE-eCCC-------CCcc-----H-----H-H----HHHHHHHhcCCCeEEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPG-------GDVT-----P-----T-L----AIYDTMQSLKSPVGTHC 162 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSPG-------G~v~-----a-----g-l----aIyD~m~~~~~~V~Tv~ 162 (234)
++.++..++.+.+..++.+| .+|.++| ..-| +|+. . . + .+++.|..++.||.+.+
T Consensus 295 l~~~~~~~L~~a~~~~~~~d--~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNE--LDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCC--CCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 66778888888888886443 3566554 3322 3331 1 1 1 14567788899999999
Q ss_pred -ccccccHH-HHHHcCCCCCCEEe-------ccCceEeeeCCCCc
Q 026750 163 -VGFAYHLA-GFLLAGGEKGNRSA-------MPLSRIALDSPAGA 198 (234)
Q Consensus 163 -~G~AaS~a-slIlaaG~kgkR~a-------~PnAriMIHqP~~~ 198 (234)
-|.|...| .=|.++||- |++ .++++|.+-...-|
T Consensus 373 ~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lG 415 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFG 415 (546)
T ss_pred CCCeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccc
Confidence 79999999 999999994 999 89999887666555
No 137
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=73.78 E-value=8.4 Score=38.58 Aligned_cols=127 Identities=19% Similarity=0.247 Sum_probs=81.5
Q ss_pred CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHH
Q 026750 103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGF 172 (234)
Q Consensus 103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~asl 172 (234)
+|.|+.+.+.. .++++.|-... .=||.+..|.|| |-+.-|--|.+.+-..+.|..|+..+-++..|.+
T Consensus 337 ~G~l~~~sa~K-aArFI~~cd~~-~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~ 414 (526)
T COG4799 337 GGVLDIDSADK-AARFIRLCDAF-NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYY 414 (526)
T ss_pred ccccchHHHHH-HHHHHHhhhcc-CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceee
Confidence 67777765542 22233333222 358999999999 6678888899999999999999999999999988
Q ss_pred HHcCCCCCC--EEeccCceEeeeCCCCcc----ccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026750 173 LLAGGEKGN--RSAMPLSRIALDSPAGAA----RGQADDIRNEADELLRVRDYIFKELSRKTDYE 231 (234)
Q Consensus 173 IlaaG~kgk--R~a~PnAriMIHqP~~~~----~G~a~di~~~a~el~~lr~~i~~iya~~TG~~ 231 (234)
.+++..-+- -++-|+|++-+-.|.+.+ +-.-.++....++...+++.+.+.|.+....|
T Consensus 415 ~M~~~~~~~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p 479 (526)
T COG4799 415 VMGGKALGPDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEEQFSNP 479 (526)
T ss_pred eecCccCCCceeEecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccch
Confidence 777654332 356677777776665432 11112222223333445566777777764443
No 138
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=64.66 E-value=6.7 Score=35.35 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH 193 (234)
+.+.||+++.||..-+-|.|+-+|.-|.+.+|- -.+..++.|..-
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tP 161 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTP 161 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCC
Confidence 566788899999999999999999999999883 567777776553
No 139
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=64.45 E-value=11 Score=31.76 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=27.2
Q ss_pred EEECcccChhhH----HHHHHHHhcccccCCCCceEEEEeCCCCCcc
Q 026750 100 IFIGQNIDEEFS----NQILATMLYLDSVDDSKRVYMYINGPGGDVT 142 (234)
Q Consensus 100 IfL~g~Id~e~a----~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ 142 (234)
+-+.|.|+..-. ++|.+ ++... .+.+.+.|.+-||||-|.
T Consensus 103 ldF~Gdi~A~~v~~LReeisa-il~~a--~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 103 LDFKGDIKASEVESLREEISA-ILSVA--TPEDEVLVRLESPGGMVH 146 (155)
T ss_pred EecCCCccHHHHHHHHHHHHH-HHHhC--CCCCeEEEEEecCCceee
Confidence 447899986433 34444 33333 455789999999999875
No 140
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=59.53 E-value=55 Score=30.56 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=63.4
Q ss_pred ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHH-----------HHHHHHhcCCCeEEEEccccccHH
Q 026750 102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA-----------IYDTMQSLKSPVGTHCVGFAYHLA 170 (234)
Q Consensus 102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~agla-----------IyD~m~~~~~~V~Tv~~G~AaS~a 170 (234)
++|.+.....+.++..+. +..+. .-|+.++..|-|+-+..|.. ++...+.-..|..++..|-++..+
T Consensus 145 ~gGSmG~v~geKi~ra~e-~A~~~-rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~ 222 (296)
T CHL00174 145 MGGSMGSVVGEKITRLIE-YATNE-SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGV 222 (296)
T ss_pred cccCcCHHHHHHHHHHHH-HHHHc-CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHH
Confidence 456666666676665554 33333 35888889999988766651 221122345689999999999888
Q ss_pred HHHHcC-CCCCCEEeccCceEeeeCCC
Q 026750 171 GFLLAG-GEKGNRSAMPLSRIALDSPA 196 (234)
Q Consensus 171 slIlaa-G~kgkR~a~PnAriMIHqP~ 196 (234)
+..++. ||- .++-|+|.+.+--|.
T Consensus 223 aas~a~l~Di--iiae~~A~IgfAGPr 247 (296)
T CHL00174 223 TASFGMLGDI--IIAEPNAYIAFAGKR 247 (296)
T ss_pred HHHHHHcccE--EEEeCCeEEEeeCHH
Confidence 888776 885 788889999888774
No 141
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=58.07 E-value=41 Score=33.84 Aligned_cols=89 Identities=12% Similarity=0.145 Sum_probs=60.2
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEE-EeCCC-------CCcc-----------HHH----HHHHHHHhcCCCeEEEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMY-INGPG-------GDVT-----------PTL----AIYDTMQSLKSPVGTHC 162 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~-INSPG-------G~v~-----------agl----aIyD~m~~~~~~V~Tv~ 162 (234)
++.++..++.+.+..++.+| .+|... |-+-| +++. ... .++..|...+.||.+.+
T Consensus 299 l~~~~~~eL~~al~~~~~~d--~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNE--LDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56777888888888776422 245433 33433 3421 001 13456677789999999
Q ss_pred c-cccccHH-HHHHcCCCCCCEEec-------cCceEeeeCCCCc
Q 026750 163 V-GFAYHLA-GFLLAGGEKGNRSAM-------PLSRIALDSPAGA 198 (234)
Q Consensus 163 ~-G~AaS~a-slIlaaG~kgkR~a~-------PnAriMIHqP~~~ 198 (234)
. |.|...| .-|.++||- |++. ++++|.+-...-|
T Consensus 377 ~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~G 419 (550)
T PRK08184 377 EPGSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFG 419 (550)
T ss_pred CCCceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECcccccc
Confidence 6 9999999 888889984 8998 8888877655544
No 142
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=54.82 E-value=63 Score=27.48 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHHh--------------------------cCCCeEE
Q 026750 108 EEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS--------------------------LKSPVGT 160 (234)
Q Consensus 108 ~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~~--------------------------~~~~V~T 160 (234)
+...+.+.+.+..++. +.+.+.|=+ |-+||++..+..|.+.+-. ...||+.
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~v 149 (224)
T cd06567 72 ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVV 149 (224)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEE
Confidence 4445555555555543 345555555 6678888888777776653 2358889
Q ss_pred EEccccccHHHHHHcCC
Q 026750 161 HCVGFAYHLAGFLLAGG 177 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG 177 (234)
++.+..+|+|-++..+=
T Consensus 150 L~~~~taSaaE~~a~~l 166 (224)
T cd06567 150 LVNEGSASASEIFAGAL 166 (224)
T ss_pred EECCCCccHHHHHHHHH
Confidence 99999999998877653
No 143
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=54.33 E-value=58 Score=28.21 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=38.3
Q ss_pred hHHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHH------------------------hcCCCeEEEEcc
Q 026750 110 FSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQ------------------------SLKSPVGTHCVG 164 (234)
Q Consensus 110 ~a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~------------------------~~~~~V~Tv~~G 164 (234)
..+++.+.|..+...+ .+.+.|=+ +.+||++..+..|.+.+- ....||..++.+
T Consensus 62 ~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pvvVLvn~ 140 (211)
T cd07560 62 TAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGKREAYASDDGGLYDGPLVVLVNG 140 (211)
T ss_pred hHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCceEEEecCCCccCCCCEEEEeCC
Confidence 3444544444444322 23344433 445666666555554332 234688888999
Q ss_pred ccccHHHHHHcCC
Q 026750 165 FAYHLAGFLLAGG 177 (234)
Q Consensus 165 ~AaS~aslIlaaG 177 (234)
..+|+|-++..+=
T Consensus 141 ~TaSaaE~~a~~l 153 (211)
T cd07560 141 GSASASEIVAGAL 153 (211)
T ss_pred CcccHHHHHHHHH
Confidence 9999988876653
No 144
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=52.96 E-value=75 Score=31.62 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=64.9
Q ss_pred EECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHH-------HH-HHHHh-cCCCeEEEEccccccHHH
Q 026750 101 FIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA-------IY-DTMQS-LKSPVGTHCVGFAYHLAG 171 (234)
Q Consensus 101 fL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~agla-------Iy-D~m~~-~~~~V~Tv~~G~AaS~as 171 (234)
|++|.+.......++..+. +..+. .-++..++.|-|+.+..+.. ++ ...+. -..|..+++.|-|+..++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e-~A~~~-~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMD-LAMKM-GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHH-HHHHc-CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 4667777777777765544 33333 36898899999988755431 22 22222 246999999999999999
Q ss_pred HHHcCCCCCCEEeccC-ceEeeeCCC
Q 026750 172 FLLAGGEKGNRSAMPL-SRIALDSPA 196 (234)
Q Consensus 172 lIlaaG~kgkR~a~Pn-AriMIHqP~ 196 (234)
+.++.+|- .++.++ +.+.+--|.
T Consensus 171 ~~~al~D~--vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 171 YSPALTDF--IYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHhcCc--eEEeccceEEEecChH
Confidence 99999995 788886 567777664
No 145
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=46.11 E-value=63 Score=29.75 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=52.0
Q ss_pred cChhhHHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHH------------------------hcCCCeEE
Q 026750 106 IDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQ------------------------SLKSPVGT 160 (234)
Q Consensus 106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~------------------------~~~~~V~T 160 (234)
.+....+++.+.|..|+..+ .+.+.|=+ +-+||++..+..+.+.+- ....||..
T Consensus 161 f~~~~~~~~~~~l~~l~~~~-~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~v 239 (334)
T TIGR00225 161 FSEHTTEDVKKALDKLEKKN-AKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVV 239 (334)
T ss_pred cccchHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEE
Confidence 34556777888887776543 56666666 779999999988888652 12358889
Q ss_pred EEccccccHHHHHHcCC
Q 026750 161 HCVGFAYHLAGFLLAGG 177 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG 177 (234)
++.+..||+|-+++.+=
T Consensus 240 Lvn~~TaSaaE~~a~~l 256 (334)
T TIGR00225 240 LVNRGSASASEIFAGAL 256 (334)
T ss_pred EECCCCCcHHHHHHHHH
Confidence 99999999988877553
No 146
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=39.96 E-value=1.6e+02 Score=26.20 Aligned_cols=132 Identities=9% Similarity=0.144 Sum_probs=73.1
Q ss_pred hchHhhhcCCcEEEECc--ccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCC----ccH---HHHHHHHHHhcCCCe
Q 026750 88 VDLWNALYRERVIFIGQ--NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGD----VTP---TLAIYDTMQSLKSPV 158 (234)
Q Consensus 88 ~Di~~~L~~~RiIfL~g--~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~----v~a---glaIyD~m~~~~~~V 158 (234)
.++|.. ++.++++.+ +|.+.....+...++.+-.+...+.|...=-.+.+. |+. .-...+.++.. +
T Consensus 69 ~riY~~--~~~~vv~~~~~~i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~~~~~v~~~at~~~~~~~l~~~---~ 143 (238)
T TIGR00161 69 VRIYEG--KDGIVLFLSDFIIPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVREKSQPVFGAANSQELIERLKDL---I 143 (238)
T ss_pred eEEEec--CCcEEEEEecccCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCCCCCcEEEEECCHHHHHHHHHh---c
Confidence 455543 233344444 456666778888888766555555555443333332 111 11233444432 1
Q ss_pred EEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc------------------cccCHHHHHHHHHHHHHHHHHH
Q 026750 159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA------------------ARGQADDIRNEADELLRVRDYI 220 (234)
Q Consensus 159 ~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~------------------~~G~a~di~~~a~el~~lr~~i 220 (234)
.-.-.|...++.++|+.-|. +.-.|...+|-.-+... ..=+.+++.++|+++++.-+.+
T Consensus 144 ~~~~~g~i~G~~g~ll~~a~---~~gi~~i~Ll~et~~~~PDP~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~~el 220 (238)
T TIGR00161 144 EIFPFGNLNGISGTLLTRCA---VNDIPAICLLAETLGPYPDPRAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRLKKL 220 (238)
T ss_pred CcCCCCEEechhHHHHHHHH---HcCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHH
Confidence 11224666777777777665 45577777776643211 1126789999999888776666
Q ss_pred HHHHHHh
Q 026750 221 FKELSRK 227 (234)
Q Consensus 221 ~~iya~~ 227 (234)
.+.+.+.
T Consensus 221 ~e~~~~~ 227 (238)
T TIGR00161 221 AEQVQGM 227 (238)
T ss_pred HHHHHHh
Confidence 6666553
No 147
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=38.96 E-value=66 Score=26.35 Aligned_cols=52 Identities=13% Similarity=0.261 Sum_probs=32.0
Q ss_pred CCcEEEECcccChh------hHHHHHHHHhcccccCCCCceEEEEeCCCCC--ccHHHHHHHHHH
Q 026750 96 RERVIFIGQNIDEE------FSNQILATMLYLDSVDDSKRVYMYINGPGGD--VTPTLAIYDTMQ 152 (234)
Q Consensus 96 ~~RiIfL~g~Id~e------~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~--v~aglaIyD~m~ 152 (234)
...+-|..=+|+|+ ..++|+..+..+ .++-.|++||-.|. .+.++.|||+|+
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-----PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS------TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455665566654 345555555444 24678999999876 688999999985
No 148
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=36.79 E-value=51 Score=32.38 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=63.7
Q ss_pred EECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCC--CccHHHH-------HHHHHHhc--CCCeEEEEccccccH
Q 026750 101 FIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG--DVTPTLA-------IYDTMQSL--KSPVGTHCVGFAYHL 169 (234)
Q Consensus 101 fL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG--~v~agla-------IyD~m~~~--~~~V~Tv~~G~AaS~ 169 (234)
|++|.+.+.....+...+. +..+. .-|+..+++|.|+ .+..|+. |+..+... ..|+.+++.|-|...
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~-~A~~~-~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg 145 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIE-LALEN-GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGG 145 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHH-HHHHH-TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGG
T ss_pred eecCCCCcccceeeehHHH-HHHHc-CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccc
Confidence 4677788877777666554 33333 4578888899999 5555443 22222211 579999999999999
Q ss_pred HHHHHcCCCCCCEEeccC-ceEeeeCCC
Q 026750 170 AGFLLAGGEKGNRSAMPL-SRIALDSPA 196 (234)
Q Consensus 170 aslIlaaG~kgkR~a~Pn-AriMIHqP~ 196 (234)
++++.+.++- .++.+. +++.+.-|.
T Consensus 146 ~A~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 146 GAYLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp GGHHHHHSSE--EEEETTTCEEESSTHH
T ss_pred hhhcccccCc--cccCccceEEEecccc
Confidence 9999998884 677776 999888774
No 149
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=36.41 E-value=1.1e+02 Score=29.10 Aligned_cols=78 Identities=10% Similarity=0.143 Sum_probs=53.1
Q ss_pred cEEEEC-cccChhhHHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHHh----------------------
Q 026750 98 RVIFIG-QNIDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS---------------------- 153 (234)
Q Consensus 98 RiIfL~-g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~~---------------------- 153 (234)
+|-||. ...+...+.++.+.|..+...+ .+.+.|=+ |-|||.+.++..|.+.+-.
T Consensus 195 ~IgYi~i~~F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (389)
T PLN00049 195 KIGYIKLTTFNQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADGS 273 (389)
T ss_pred CEEEEEeccccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCCC
Confidence 454432 2234556777888887776544 45666666 7789999999888887721
Q ss_pred ----cCCCeEEEEccccccHHHHHHcC
Q 026750 154 ----LKSPVGTHCVGFAYHLAGFLLAG 176 (234)
Q Consensus 154 ----~~~~V~Tv~~G~AaS~aslIlaa 176 (234)
...|+..++.+..||+|-++..+
T Consensus 274 ~~~~~~~PvvVLvn~~TaSasEi~a~a 300 (389)
T PLN00049 274 SAIATSEPLAVLVNKGTASASEILAGA 300 (389)
T ss_pred ccccCCCCEEEEECCCCccHHHHHHHH
Confidence 12478888888888888776543
No 150
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=36.40 E-value=2.8e+02 Score=23.82 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=47.2
Q ss_pred HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCcc--c-------------c---CHHHHHH
Q 026750 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA--R-------------G---QADDIRN 208 (234)
Q Consensus 147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~--~-------------G---~a~di~~ 208 (234)
+.+.++....++. .-.|...++.++|+..+. +.-.+..-++.|-|.-.. . | +.++|.+
T Consensus 77 l~~~l~~~g~~~~-~~~g~i~G~~glLl~~a~---~~gi~ai~L~~e~p~y~pDP~AA~alL~~L~kllgl~vd~~~L~e 152 (188)
T TIGR00162 77 LVEELKEHGVKFR-EPGGGIIGASGLLLGVSE---LEGIPGACLMGETPGYMIDPKAAKAVLEVLCKMLSLEVSVEALEE 152 (188)
T ss_pred HHHHHHhcCCeee-cCCCccccHHHHHHHHHH---HCCCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3444444433321 235677777777777664 456788889888765211 1 1 5788889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026750 209 EADELLRVRDYIFKELS 225 (234)
Q Consensus 209 ~a~el~~lr~~i~~iya 225 (234)
+|+++++.-+.+.++-.
T Consensus 153 ~Ae~ie~~~~~~~~~~~ 169 (188)
T TIGR00162 153 RAKEMEKIIAKIKEMEE 169 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888866666666554
No 151
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.91 E-value=1.1e+02 Score=24.89 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=22.2
Q ss_pred eEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcccc
Q 026750 130 VYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFA 166 (234)
Q Consensus 130 I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~A 166 (234)
+.++=.+-||+.....-+.+.+...++++..+..|.-
T Consensus 32 ~~v~N~g~~G~~~~~~~~~~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 32 LEVINLGFSGNARLEPEVAELLRDVPADLYIIDCGPN 68 (177)
T ss_pred CCeEEeeecccccchHHHHHHHHhcCCCEEEEEeccC
Confidence 4444455666644333455666667777777777755
No 152
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.11 E-value=2.6e+02 Score=23.19 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=41.6
Q ss_pred cEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC-CCccHHHHHHHHHHhcCCCeEEEEcccc
Q 026750 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-GDVTPTLAIYDTMQSLKSPVGTHCVGFA 166 (234)
Q Consensus 98 RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-G~v~aglaIyD~m~~~~~~V~Tv~~G~A 166 (234)
++.++++. +++.+.+.+.|.. ..| .+.+.=..+| -+-.+--.|.+.|+..++++.-+++|.=
T Consensus 50 ~ifllG~~--~~~~~~~~~~l~~---~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 50 RIFLLGGS--EEVLEKAAANLRR---RYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred eEEEEeCC--HHHHHHHHHHHHH---HCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 56666664 5666667766653 233 3444432222 3667888999999999999999998853
No 153
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=34.92 E-value=22 Score=33.49 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=32.3
Q ss_pred CccHHHHHHHHHHhcCCCeEEEEc-------c----ccccHHHHHHcCCCCCCEEeccCceE
Q 026750 140 DVTPTLAIYDTMQSLKSPVGTHCV-------G----FAYHLAGFLLAGGEKGNRSAMPLSRI 190 (234)
Q Consensus 140 ~v~aglaIyD~m~~~~~~V~Tv~~-------G----~AaS~aslIlaaG~kgkR~a~PnAri 190 (234)
--.+.++|||+.+.+...+.--.. | ......++|||+|. ++|+..+-+.+
T Consensus 121 ~~~a~ltiydm~k~~~~~~~i~~~~l~~k~gg~s~~~~~~i~~IILAGGk-SsRMG~dKaLL 181 (346)
T PRK14500 121 VAVAALTIYDMCKSISPHIIIKETRLIEKSGGKADLSQTPLYGLVLTGGK-SRRMGKDKALL 181 (346)
T ss_pred HHHHHHHHHHHHhccCCCcEEeeEEEEEecCCcCCCCCCCceEEEEeccc-cccCCCCcccc
Confidence 346789999999998764322111 1 33466778888886 67876544443
No 154
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=34.29 E-value=1e+02 Score=28.89 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=52.3
Q ss_pred EEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHH-HHHHhcCCCeEEEEccccccHHHHHHcCCC
Q 026750 100 IFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIY-DTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178 (234)
Q Consensus 100 IfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIy-D~m~~~~~~V~Tv~~G~AaS~aslIlaaG~ 178 (234)
|=|+|. +-....+++.|..|+ +|+..+..+.|-=+||.-.+--+-| .. +..+.||..+..|..| .
T Consensus 176 IGiGGD--pi~Gt~fid~L~~fe-~Dp~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~ta----------p 241 (293)
T COG0074 176 IGIGGD--PIPGTSFIDALEMFE-ADPETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRTA----------P 241 (293)
T ss_pred EEeCCC--CcCCccHHHHHHHHh-cCccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccCC----------C
Confidence 445543 222334666666565 5677788999999999875544322 22 3344899999999988 7
Q ss_pred CCCEEeccCceEee
Q 026750 179 KGNRSAMPLSRIAL 192 (234)
Q Consensus 179 kgkR~a~PnAriMI 192 (234)
+|||+..-.|.++=
T Consensus 242 ~gkrmGhaGaiv~~ 255 (293)
T COG0074 242 EGKRMGHAGAIVSG 255 (293)
T ss_pred ccchhhhhhhhhcC
Confidence 88888766666543
No 155
>PRK11186 carboxy-terminal protease; Provisional
Probab=34.16 E-value=1e+02 Score=31.83 Aligned_cols=68 Identities=10% Similarity=0.221 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHHh-------------------------cCCCeEEE
Q 026750 108 EEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS-------------------------LKSPVGTH 161 (234)
Q Consensus 108 ~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~~-------------------------~~~~V~Tv 161 (234)
...++++...|..|..++ .+.+.|=+ |-|||.+..+..|.+.+-. ...|+..+
T Consensus 365 ~~~~~d~~~~l~~l~~~~-v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVL 443 (667)
T PRK11186 365 VGLTDDVKKQLQKLEKQN-VSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVL 443 (667)
T ss_pred cchHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEE
Confidence 345677777777776543 56677777 8899999999988886421 12488889
Q ss_pred EccccccHHHHHHcC
Q 026750 162 CVGFAYHLAGFLLAG 176 (234)
Q Consensus 162 ~~G~AaS~aslIlaa 176 (234)
+.+..||++-++.++
T Consensus 444 VN~~SASASEIfA~a 458 (667)
T PRK11186 444 VDRYSASASEIFAAA 458 (667)
T ss_pred eCCCCccHHHHHHHH
Confidence 999999998887765
No 156
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=33.51 E-value=57 Score=29.41 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=35.4
Q ss_pred ceEEEEeCCC-CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCC
Q 026750 129 RVYMYINGPG-GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178 (234)
Q Consensus 129 ~I~L~INSPG-G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~ 178 (234)
.|.+.+..+| |.++.+++|.+.|+. ..+|.-++.|. ...++-..|-
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~---~~~~~~~~~~ 47 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR---SKNYISKYGF 47 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC---HHHhhhhhcC
Confidence 3778999999 999999999999998 88887776665 4444433343
No 157
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=33.31 E-value=68 Score=27.03 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=27.6
Q ss_pred EEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 132 L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
+.|| ||+...-..||.|+++.+..|+.-+-+.
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~vEVHlS 101 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVVEVHLS 101 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEEEEEec
Confidence 7777 9999999999999999999887766544
No 158
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.48 E-value=1.5e+02 Score=23.57 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=42.8
Q ss_pred CcEEEECcccChhh--HHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHH--HHHHHHhcCCCeEEEEccccc
Q 026750 97 ERVIFIGQNIDEEF--SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA--IYDTMQSLKSPVGTHCVGFAY 167 (234)
Q Consensus 97 ~RiIfL~g~Id~e~--a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~agla--IyD~m~~~~~~V~Tv~~G~Aa 167 (234)
+|++++++.|++-. ...+...|. ...+...+.+.=-+-+|+....+. +...+...++++.++..|.--
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l~---~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ND 73 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYLA---ARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGIND 73 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHHH---HhCCCCCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEeecch
Confidence 58999999999854 333333333 222334677777777888777663 333344556789999887443
No 159
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=32.39 E-value=1.5e+02 Score=26.58 Aligned_cols=45 Identities=7% Similarity=0.173 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHHh
Q 026750 108 EEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS 153 (234)
Q Consensus 108 ~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~~ 153 (234)
+...+++.+.+..|..++ .+.+.|=+ +-|||.+..+..|.+.+-.
T Consensus 76 ~~~~~~l~~a~~~l~~~~-~~~LIlDLR~N~GG~~~~a~~las~f~~ 121 (256)
T cd07561 76 SGYDDELNQAFAEFKAQG-VTELVLDLRYNGGGLVSSANLLASLLAP 121 (256)
T ss_pred cchHHHHHHHHHHHHHcC-CCeEEEEeCCCCCccHHHHHHHHHHhcC
Confidence 345566777777676543 44555555 6688888888877776654
No 160
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=28.08 E-value=1.9e+02 Score=27.38 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=68.0
Q ss_pred ccCCCCcceeecCCCCCC----chhchHhhhc-CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCcc
Q 026750 68 MPIGTPKVLYRTPGEGSW----QWVDLWNALY-RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT 142 (234)
Q Consensus 68 mp~g~P~v~~~~~g~~~~----~w~Di~~~L~-~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ 142 (234)
-|+.+|+|.+..+.++.. .-..++.++. .+-.|-+ -..+++....+.+|+..+... .+--.+++
T Consensus 214 ~pv~ipRiS~aD~R~RH~GiSHHslT~l~~val~~~~v~v-P~l~~~~~~~v~~q~~~~~~~--~kH~iv~v-------- 282 (320)
T PF12982_consen 214 RPVAIPRISFADPRERHRGISHHSLTALGRVALAPADVPV-PILDPEKMARVEEQLAELGLA--AKHRIVEV-------- 282 (320)
T ss_pred eEEEEeecccCCCccccCCcCcchhHHHHHHhcCCeeEEc-cCCChHHHHHHHHHHHhcCCC--CceEEEEe--------
Confidence 578889999877666541 1245565553 3334434 336777888888999887652 23333344
Q ss_pred HHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCC
Q 026750 143 PTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178 (234)
Q Consensus 143 aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~ 178 (234)
++-.+.+.++..+.++.|..-|+-.--+.|+.++..
T Consensus 283 ~~~~~~~~l~~~~~~lsTMGR~~~eDp~fFlaa~AA 318 (320)
T PF12982_consen 283 DAEGLLEALRASPVKLSTMGRGLDEDPAFFLAAAAA 318 (320)
T ss_pred ccHHHHHHHHhCCCCeecCCCCcccCHHHHHHHHHh
Confidence 224457888999999999999999999999887653
No 161
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=27.60 E-value=1.1e+02 Score=29.02 Aligned_cols=45 Identities=16% Similarity=0.389 Sum_probs=31.0
Q ss_pred CCcEEEECcccCh---hhHHHHHHHHhcccccCCCCceEEEEeCCCCCc
Q 026750 96 RERVIFIGQNIDE---EFSNQILATMLYLDSVDDSKRVYMYINGPGGDV 141 (234)
Q Consensus 96 ~~RiIfL~g~Id~---e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v 141 (234)
+.++|.+.|.|.. ..|.++.++|-+-.- ..-+-=.+|+||.|++.
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hf-P~~~~d~iyvdsyg~D~ 117 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHF-PEFRMDDIYVDSYGNDL 117 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCccc-ccccccceeecccCccc
Confidence 4458999999986 478888888865322 11223347899999874
No 162
>smart00245 TSPc tail specific protease. tail specific protease
Probab=27.56 E-value=2.3e+02 Score=23.78 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=40.3
Q ss_pred ChhhHHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHHhc-------------------------CCCeEE
Q 026750 107 DEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQSL-------------------------KSPVGT 160 (234)
Q Consensus 107 d~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~~~-------------------------~~~V~T 160 (234)
+....+.+.+.+..|...+ .+.+.|-+ +.+||.+.++..+.+.+-.- ..||..
T Consensus 39 ~~~~~~~~~~~~~~l~~~~-~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~v 117 (192)
T smart00245 39 SEHTSNLVEKAWKKLEKTN-VEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPANLGRKYSKPLVV 117 (192)
T ss_pred ChhhHHHHHHHHHHHHhCC-CcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecCCCcccCCCEEE
Confidence 3334455555555555432 34555555 45777777777776665221 245777
Q ss_pred EEccccccHHHHHHcCC
Q 026750 161 HCVGFAYHLAGFLLAGG 177 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG 177 (234)
++.+..+|+|-+++++=
T Consensus 118 L~~~~TaSaaE~~a~~l 134 (192)
T smart00245 118 LVNEGTASASEIFAGAL 134 (192)
T ss_pred EECCCCeeHHHHHHHHH
Confidence 77777777777665543
No 163
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=27.02 E-value=96 Score=23.03 Aligned_cols=78 Identities=8% Similarity=0.024 Sum_probs=43.1
Q ss_pred EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH--H-HHHHHHHHhcC-CCeEEEEccccccHHHHHH
Q 026750 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP--T-LAIYDTMQSLK-SPVGTHCVGFAYHLAGFLL 174 (234)
Q Consensus 99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a--g-laIyD~m~~~~-~~V~Tv~~G~AaS~aslIl 174 (234)
++.+.|+++...++.+.+++..+-...+.+.+. |+--|=..-+ | .++....+..+ ..+..+-.|.-....-++-
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vi--lDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~ 88 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLI--LNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAVKRLFE 88 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEE--EECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 577999999999999998886543222234444 4333322211 2 22333333333 3455556666666666665
Q ss_pred cCCC
Q 026750 175 AGGE 178 (234)
Q Consensus 175 aaG~ 178 (234)
.+|-
T Consensus 89 ~~gl 92 (106)
T TIGR02886 89 LSGL 92 (106)
T ss_pred HhCC
Confidence 5554
No 164
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=26.39 E-value=1.4e+02 Score=23.65 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=39.2
Q ss_pred HHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHH-----------------------------hcCCCeEE
Q 026750 111 SNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQ-----------------------------SLKSPVGT 160 (234)
Q Consensus 111 a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~-----------------------------~~~~~V~T 160 (234)
.+.+.+.+..+.. .+.+.+.|=+ +.+||+...+..+...+- ....+|..
T Consensus 17 ~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 95 (169)
T PF03572_consen 17 DEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPVYV 95 (169)
T ss_dssp HHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEEEE
T ss_pred HHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCEEE
Confidence 3344444444433 2345666666 667888777777666543 13457899
Q ss_pred EEccccccHHHHHHcCC
Q 026750 161 HCVGFAYHLAGFLLAGG 177 (234)
Q Consensus 161 v~~G~AaS~aslIlaaG 177 (234)
++.+.++|+|-+++.+-
T Consensus 96 L~~~~t~Saae~fa~~l 112 (169)
T PF03572_consen 96 LTDENTASAAEIFASAL 112 (169)
T ss_dssp EE-TTBBTHHHHHHHHH
T ss_pred EeCCCCCChhHHHHHHH
Confidence 99999999998887654
No 165
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=24.84 E-value=95 Score=27.45 Aligned_cols=45 Identities=31% Similarity=0.350 Sum_probs=34.9
Q ss_pred HHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcC
Q 026750 111 SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK 155 (234)
Q Consensus 111 a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~ 155 (234)
+..|.++.+.+..-...+.+-+|+|.++|.|.-+--|-+.+|.=+
T Consensus 31 s~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~gK 75 (200)
T KOG3093|consen 31 SEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDGK 75 (200)
T ss_pred HHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcCC
Confidence 455666666655444578999999999999999988888888654
No 166
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=24.15 E-value=1.7e+02 Score=26.45 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=49.3
Q ss_pred CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEE---EEc-----cccccHHHHHH
Q 026750 103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT---HCV-----GFAYHLAGFLL 174 (234)
Q Consensus 103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~T---v~~-----G~AaS~aslIl 174 (234)
...|-..+..++-.++..++ .....+.+|+||+.+.++.++-+.++..+..+.| +.- --|++|+=+|=
T Consensus 54 tPaiaaG~~~el~r~~~~~d----gr~l~VvVse~~a~~da~sal~~lir~~G~y~~t~v~lnSpGGsv~kA~~mgkLiR 129 (245)
T COG3904 54 TPAIAAGTPAELKRTLKTLD----GRQLPVVVSEPGANVDAASALGRLIRKAGLYIATGVTLNSPGGSVAKACSMGKLIR 129 (245)
T ss_pred CCcccCCCHHHHHHhhhhcc----CceeeEEEcCCCCCccHHHHHHHHHhccCceeEEEEEecCCCCcHHHHHhhhhhhh
Confidence 34444444455555555443 4679999999999999999999999999988888 222 25667766654
Q ss_pred c
Q 026750 175 A 175 (234)
Q Consensus 175 a 175 (234)
.
T Consensus 130 e 130 (245)
T COG3904 130 E 130 (245)
T ss_pred h
Confidence 3
No 167
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=24.14 E-value=1.9e+02 Score=26.45 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=39.4
Q ss_pred cEEEECcccChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 026750 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPTLAIYDTMQSLKSPVGTHC 162 (234)
Q Consensus 98 RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~aglaIyD~m~~~~~~V~Tv~ 162 (234)
||+|+++.+...--..+...|-.|..+.+. .+.| |..|| ....-.+++.|.....+|.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~---D~vIaNgEn~~gG-~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQA---DLVIANGENTTHG-KGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCC---CEEEEcCcccCCC-CCCCHHHHHHHHhcCCCEEEcc
Confidence 689998888775444445555555554432 2333 45555 3445789999999998888874
No 168
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=23.71 E-value=1.9e+02 Score=27.83 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=53.4
Q ss_pred ChhhHHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHHhc-------------------------CCCeEE
Q 026750 107 DEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQSL-------------------------KSPVGT 160 (234)
Q Consensus 107 d~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~~~-------------------------~~~V~T 160 (234)
++...+++-..|..|..+. .+.+.|-+ |-|||...++..|.+..... ..|+..
T Consensus 214 ~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~Plvv 292 (406)
T COG0793 214 GEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVV 292 (406)
T ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEE
Confidence 3456667777787888766 67888888 88999999999999877621 257888
Q ss_pred EEccccccHHHHHHcC
Q 026750 161 HCVGFAYHLAGFLLAG 176 (234)
Q Consensus 161 v~~G~AaS~aslIlaa 176 (234)
++.+..||++-++..|
T Consensus 293 Lvn~~SASAsEI~aga 308 (406)
T COG0793 293 LVNEGSASASEIFAGA 308 (406)
T ss_pred EECCCCccHHHHHHHH
Confidence 8889999988876654
No 169
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.65 E-value=2.7e+02 Score=22.20 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=35.5
Q ss_pred cEEEECcccChh--hHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHH------HHHHhcCCCeEEEEccccc
Q 026750 98 RVIFIGQNIDEE--FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIY------DTMQSLKSPVGTHCVGFAY 167 (234)
Q Consensus 98 RiIfL~g~Id~e--~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIy------D~m~~~~~~V~Tv~~G~Aa 167 (234)
||+|+++.|.+- ....+.+.| .+.++=-+-+|..+..+.=+ ..+...++++..++.|.--
T Consensus 1 ~iv~~GDS~t~g~~~~~~l~~~l----------~~~v~N~g~~G~t~~~~~~~~~~~~~~~l~~~~pd~Vii~~G~ND 68 (189)
T cd01825 1 RIAQLGDSHIAGDFFTDVLRGLL----------GVIYDNLGVNGASASLLLKWDAEFLQAQLAALPPDLVILSYGTNE 68 (189)
T ss_pred CeeEecCccccccchhhHHHhhh----------ceEEecCccCchhhhhhhccCHHHHHHHHhhCCCCEEEEECCCcc
Confidence 688899888873 333333332 34444444566654433211 1355678899999998664
No 170
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=23.62 E-value=1.7e+02 Score=27.20 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=50.3
Q ss_pred EEEECcc--cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccc
Q 026750 99 VIFIGQN--IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY 167 (234)
Q Consensus 99 iIfL~g~--Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~Aa 167 (234)
+|-++.+ .|- .+.+.|.||..++.++-|.||+-+-|-.+.++-.+.+..+. +.||..+..|..+
T Consensus 180 ~VS~Gn~~~adv----~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 180 CVGIGGDPFNGT----NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEeCCCCCCCC----CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 5667777 443 45566778877778999999999888888888888888664 7899999998875
No 171
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=23.50 E-value=1.3e+02 Score=27.47 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750 145 LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195 (234)
Q Consensus 145 laIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP 195 (234)
-.+++.|...+.||.+-.+|.|-..|-=+..|||- |.+..++.+-+-.-
T Consensus 114 R~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDi--Rva~s~akmGLvET 162 (291)
T KOG1679|consen 114 RGLFNDIERLPQPVIAAIDGAALGGGLELALACDI--RVAASSAKMGLVET 162 (291)
T ss_pred HHHHHHHHhCCccceehhcchhcccchhhhhhccc--eehhhhcccccccc
Confidence 35788888999999999999999999999999995 99988888766544
No 172
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=22.15 E-value=4.8e+02 Score=26.28 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=51.5
Q ss_pred cccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750 104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 173 (234)
Q Consensus 104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI 173 (234)
|-++.+++....- ++.|-.+. .=|+.+.-|+|| |-...|--+.+..-..+.|-.|+..|-+.. |.+=
T Consensus 363 G~L~s~sa~Kgar-fIe~c~q~-~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~ 439 (536)
T KOG0540|consen 363 GVLFSESAVKGAR-FIELCDQR-NIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYA 439 (536)
T ss_pred cccchhhhhhhHH-HHHHHHhc-CCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Cccc
Confidence 5555565543332 33333222 357888889998 233445556677777778888888887777 3333
Q ss_pred Hc----CCCCCCEEeccCceEeee
Q 026750 174 LA----GGEKGNRSAMPLSRIALD 193 (234)
Q Consensus 174 la----aG~kgkR~a~PnAriMIH 193 (234)
+| .|+- -|+-|||+|-+-
T Consensus 440 m~sr~~~gd~--~yawP~A~Iavm 461 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAVM 461 (536)
T ss_pred ccccccCCce--eEEcccceeeec
Confidence 22 2443 477788887763
No 173
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.15 E-value=4.2e+02 Score=21.46 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=41.6
Q ss_pred cEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCcc------H-HHHHHHHHHhcCCCeEEEEccccc
Q 026750 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT------P-TLAIYDTMQSLKSPVGTHCVGFAY 167 (234)
Q Consensus 98 RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~------a-glaIyD~m~~~~~~V~Tv~~G~Aa 167 (234)
||+|+++.+.......+.. ++.. ...+.++-.+-||.-. . ...+.+.+...++++..++.|.--
T Consensus 1 ril~iGDS~~~g~~~~l~~---~~~~---~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~pd~vii~~G~ND 71 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLR---ALAD---NPGIRVINRSKGSSGLVRPDFFDWPEKLKELIAEEKPDVVVVFLGAND 71 (200)
T ss_pred CEEEEechHHHHHHHHHHH---Hhcc---CCCcEEEECccccccccCCCcCCHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 6899999988876554432 2222 2357777777776431 1 123566677788999999988754
No 174
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=21.35 E-value=5.7e+02 Score=22.54 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=47.6
Q ss_pred hhcCCcEEEECc-ccChhhHHHHHHHHhcccccCCCCceEEEE-eCCCCCccHHHHHHHHHHh-----------------
Q 026750 93 ALYRERVIFIGQ-NIDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS----------------- 153 (234)
Q Consensus 93 ~L~~~RiIfL~g-~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSPGG~v~aglaIyD~m~~----------------- 153 (234)
++..++|-||.= .++++...++...++... + .+.+.|=+ |-+||++.. .|.+.+..
T Consensus 83 ~~~~~~igYi~i~~~~~~~~~~~~~~~~~~~--~-~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~~~ 157 (266)
T cd07562 83 ELSDGRIGYVHIPDMGDDGFAEFLRDLLAEV--D-KDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPVTY 157 (266)
T ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHHHhcC--C-CceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCCCC
Confidence 344466655431 224455556666665432 1 45666666 668888433 33444321
Q ss_pred ----cCCCeEEEEccccccHHHHHHcC
Q 026750 154 ----LKSPVGTHCVGFAYHLAGFLLAG 176 (234)
Q Consensus 154 ----~~~~V~Tv~~G~AaS~aslIlaa 176 (234)
.+.||..++.+.++|+|-+++.+
T Consensus 158 p~~~~~~pv~vL~~~~t~SaaE~~a~~ 184 (266)
T cd07562 158 PSGRWRGPVVVLVNEGSASDAEIFAYG 184 (266)
T ss_pred cccccCCCEEEEECCCCCchHHHHHHH
Confidence 35699999999999999887754
No 175
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=21.09 E-value=4.6e+02 Score=22.85 Aligned_cols=74 Identities=7% Similarity=-0.031 Sum_probs=44.1
Q ss_pred chHhhhcCCcEEEECcccChhhHHHHHHHHhccc-ccCCCCceEEEE---eCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750 89 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLD-SVDDSKRVYMYI---NGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (234)
Q Consensus 89 Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~-~~~~~k~I~L~I---NSPGG~v~aglaIyD~m~~~~~~V~Tv~~G 164 (234)
++...++.+--+-+-| +.+++.|--.+..|. ..+....+.|.+ |...|.+.+-.+--..-+..+.+|+|+.+|
T Consensus 75 ~~l~~~l~~~q~g~ag---~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG 151 (191)
T cd01455 75 ETLKMMHAHSQFCWSG---DHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIG 151 (191)
T ss_pred HHHHHHHHhcccCccC---ccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEec
Confidence 4455666655443333 566666666666665 333334455555 444555666554445566778899999998
Q ss_pred c
Q 026750 165 F 165 (234)
Q Consensus 165 ~ 165 (234)
-
T Consensus 152 ~ 152 (191)
T cd01455 152 S 152 (191)
T ss_pred C
Confidence 6
No 176
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=20.61 E-value=30 Score=31.73 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=43.7
Q ss_pred HHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750 148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA 198 (234)
Q Consensus 148 yD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~ 198 (234)
|..|..++.||.+-+-|.|.++|.=|..|++- ||+...|.|-+...-.|
T Consensus 119 ~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvg 167 (292)
T KOG1681|consen 119 FTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVG 167 (292)
T ss_pred HHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeee
Confidence 66777888999999999999999999999995 99999999999987655
No 177
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=20.39 E-value=2.4e+02 Score=27.45 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=62.0
Q ss_pred CcEEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe-----CCCCCccHH-------------------HHH
Q 026750 97 ERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT-------------------LAI 147 (234)
Q Consensus 97 ~RiIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-----SPGG~v~ag-------------------laI 147 (234)
.|+|-|+-+ |+-++...+..+|..++..+..+-|.|-=+ |-||||.+. ..+
T Consensus 48 ~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl 127 (401)
T KOG1684|consen 48 ARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSL 127 (401)
T ss_pred eeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 467777744 667888888889988886543332211112 356885321 223
Q ss_pred HHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEE-------eccCceEeee
Q 026750 148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRS-------AMPLSRIALD 193 (234)
Q Consensus 148 yD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~-------a~PnAriMIH 193 (234)
...|-.+..|+.++..|+-.+.|.=|..-|. -|. |+|..-|-+|
T Consensus 128 ~~~igtY~KP~ValmdGITMGgG~GLS~hg~--fRVATerT~~AmPEt~IGlf 178 (401)
T KOG1684|consen 128 NHLIGTYLKPYVALMDGITMGGGVGLSVHGR--FRVATERTVFAMPETGIGLF 178 (401)
T ss_pred HHHHHHhcCceEEEeeceeecCCcceeecce--eEEeeccceecccccccccc
Confidence 3456677789999999999999999888875 255 4555555555
Done!