BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026751
MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQ
WTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSP
PAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDI
NQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG

High Scoring Gene Products

Symbol, full name Information P value
XRI1
AT5G48720 		protein from Arabidopsis thaliana 1.1e-57
AT2G01990 protein from Arabidopsis thaliana 2.7e-13
AT1G14630 protein from Arabidopsis thaliana 7.3e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026751
        (233 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2156519 - symbol:XRI1 "AT5G48720" species:3702...   593  1.1e-57   1
TAIR|locus:2041110 - symbol:AT2G01990 "AT2G01990" species...   174  2.7e-13   1
TAIR|locus:2204538 - symbol:AT1G14630 "AT1G14630" species...   146  7.3e-09   1


>TAIR|locus:2156519 [details] [associations]
            symbol:XRI1 "AT5G48720" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006281 "DNA repair" evidence=IMP] [GO:0007140
            "male meiosis" evidence=IMP] [GO:0007143 "female meiosis"
            evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
            [GO:0010165 "response to X-ray" evidence=IEP] [GO:0006302
            "double-strand break repair" evidence=RCA] [GO:0006355 "regulation
            of transcription, DNA-dependent" evidence=RCA] [GO:0009165
            "nucleotide biosynthetic process" evidence=RCA] [GO:0010332
            "response to gamma radiation" evidence=RCA] [GO:0043687
            "post-translational protein modification" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009555
            GO:GO:0006281 GO:GO:0007143 GO:GO:0007140 GO:GO:0010165
            EMBL:AB012242 EMBL:BT012214 EMBL:BT020567 IPI:IPI00546555
            IPI:IPI00931065 RefSeq:NP_001154770.1 RefSeq:NP_199683.2
            UniGene:At.50516 IntAct:Q6NLW5 STRING:Q6NLW5
            EnsemblPlants:AT5G48720.2 GeneID:834930 KEGG:ath:AT5G48720
            TAIR:At5g48720 eggNOG:NOG242961 HOGENOM:HOG000070695
            InParanoid:Q6NLW5 OMA:ITIMRTR PhylomeDB:Q6NLW5
            ProtClustDB:CLSN2681668 Genevestigator:Q6NLW5 Uniprot:Q6NLW5
        Length = 300

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 122/224 (54%), Positives = 158/224 (70%)

Query:    10 ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
             ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct:    80 ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query:    70 SASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANIL 129
             SASS +G D   E W ++CLND E     D+L+F G+ D+Q+DISE+ N PP  +   + 
Sbjct:   139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDLNF-GSPDVQVDISEYLNVPPETETREV- 196

Query:   130 QQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS 189
             Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +
Sbjct:   197 QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPA 256

Query:   190 TLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
               + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct:   257 KPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300


>TAIR|locus:2041110 [details] [associations]
            symbol:AT2G01990 "AT2G01990" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 EMBL:BT020397 IPI:IPI00548565
            RefSeq:NP_178308.2 UniGene:At.41526 DNASU:814730
            EnsemblPlants:AT2G01990.1 GeneID:814730 KEGG:ath:AT2G01990
            OMA:NERILMA ProtClustDB:CLSN2918894 Genevestigator:Q5M751
            Uniprot:Q5M751
        Length = 213

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 64/173 (36%), Positives = 85/173 (49%)

Query:    78 DQSLEGW-ISE---CLND----PEMNFSTDELDFSGASDIQIDISEFSNSPP---AYDDA 126
             D S   W + E   CLN     P +N  T E   SG S  Q  IS    SP    +YD  
Sbjct:    52 DDSQNDWGLHESYSCLNSQFVTPHVN--TGER-ISGVSYCQETISNVYESPDTSVSYDKI 108

Query:   127 NILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRI-H 185
              + ++  T+   +      K LI   TKL     YPF  +KP G   D+TL DIN+RI  
Sbjct:   109 YVREKSPTEPSSSNCGNKNKRLI---TKLV----YPFGLVKPGGRENDVTLNDINERILM 161

Query:   186 SPASTLRQNTEDPSAYP-----KSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
             +P+  +R    D ++ P         SGK VV  TKI+T+G +G+ITI+RTKG
Sbjct:   162 APSRPIRHPVGDFASRPCVSGRGPGLSGKAVVALTKIQTQG-RGTITIIRTKG 213


>TAIR|locus:2204538 [details] [associations]
            symbol:AT1G14630 "AT1G14630" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC010657
            IPI:IPI00546600 RefSeq:NP_172915.4 UniGene:At.49883 DNASU:838025
            EnsemblPlants:AT1G14630.1 GeneID:838025 KEGG:ath:AT1G14630
            TAIR:At1g14630 eggNOG:NOG295899 HOGENOM:HOG000242854
            InParanoid:Q3EDC6 OMA:SENYSCT PhylomeDB:Q3EDC6
            ProtClustDB:CLSN2927333 Genevestigator:Q3EDC6 Uniprot:Q3EDC6
        Length = 226

 Score = 146 (56.5 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 41/81 (50%), Positives = 49/81 (60%)

Query:   159 VAYPFAFIKPCGVHGDITLKDINQRIHSP-ASTLRQNTEDPSAYP-KSA----FSGKPVV 212
             V YPF  +KP G   DITL DIN+RI  P A  +R    D +  P  SA     SGK VV
Sbjct:   147 VVYPFGVVKPGGREEDITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAVV 206

Query:   213 GKTKIRTEGGKGSITIMRTKG 233
               TKI+T G +G+ITI+RTKG
Sbjct:   207 AFTKIQTLG-RGTITIIRTKG 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       233   0.00086  113 3  11 23  0.48    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  188 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.25u 0.19s 22.44t   Elapsed:  00:00:01
  Total cpu time:  22.25u 0.19s 22.44t   Elapsed:  00:00:01
  Start:  Sat May 11 04:32:04 2013   End:  Sat May 11 04:32:05 2013

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