BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026751
         (233 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2
          Length = 300

 Score =  230 bits (587), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 158/224 (70%), Gaps = 3/224 (1%)

Query: 10  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct: 80  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query: 70  SASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANIL 129
           SASS +G D   E W ++CLND E     D+L+F G+ D+Q+DISE+ N PP  +   + 
Sbjct: 139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDLNF-GSPDVQVDISEYLNVPPETETREV- 196

Query: 130 QQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS 189
           Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +
Sbjct: 197 QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPA 256

Query: 190 TLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
             + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 257 KPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300


>sp|Q923B6|STEA4_MOUSE Metalloreductase STEAP4 OS=Mus musculus GN=Steap4 PE=2 SV=1
          Length = 470

 Score = 35.0 bits (79), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 136 TPHNVVFRGRKSLIRTPTKLASSV--AYPFAFIKPCGVHGDITLKDINQR--IHSPASTL 191
           T H +V+ G++ L  +P+ L  S+  AY  A + PC V   + LK I     I    + +
Sbjct: 395 TAHTLVYGGKRFL--SPSILRWSLPSAYILALVIPCAV---LVLKCILIMPCIDKTLTRI 449

Query: 192 RQNTEDPSAYPKSAFSGK 209
           RQ  E  S Y +SA +GK
Sbjct: 450 RQGWERNSKYTQSALNGK 467


>sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase subunit beta'' OS=Chaetosphaeridium
           globosum GN=rpoC2 PE=3 SV=1
          Length = 1373

 Score = 30.8 bits (68), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 118 NSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGV--HGDI 175
           N+P  + + N L ++  K  +N V    +  I   TK+ASS  Y    I+ CG+  +G I
Sbjct: 563 NNPNIFSETN-LNKYSLKKFYNFVLEKNQKFISNNTKIASSSIYKH-HIENCGIIKYGSI 620

Query: 176 TLKDINQRIHSPASTLRQ 193
            +K          +T+++
Sbjct: 621 QIKPFPSNFDQDLNTIKE 638


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,963,324
Number of Sequences: 539616
Number of extensions: 3513648
Number of successful extensions: 7028
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6933
Number of HSP's gapped (non-prelim): 107
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)