Query 026751
Match_columns 233
No_of_seqs 61 out of 63
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 12:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02817 E3_binding: e3 bindin 27.2 42 0.00091 22.6 1.5 18 163-180 20-37 (39)
2 PF06744 DUF1215: Protein of u 15.9 89 0.0019 24.8 1.4 21 160-184 54-74 (125)
3 cd04412 NDPk7B Nucleoside diph 12.6 1.1E+02 0.0025 24.7 1.2 23 163-186 4-26 (134)
4 TIGR00214 lipB lipoate-protein 11.7 1.1E+02 0.0024 26.8 1.0 20 162-181 142-163 (184)
5 PF03471 CorC_HlyC: Transporte 11.4 1.3E+02 0.0028 21.9 1.1 17 171-187 10-26 (81)
6 PRK13015 3-dehydroquinate dehy 10.8 1.3E+02 0.0028 25.9 1.1 18 170-187 21-38 (146)
7 COG3889 Predicted solute bindi 10.2 1.8E+02 0.0039 31.5 2.0 30 153-184 483-513 (872)
8 PF03785 Peptidase_C25_C: Pept 9.5 1.7E+02 0.0037 23.1 1.2 24 207-230 46-69 (81)
9 TIGR01088 aroQ 3-dehydroquinat 8.7 1.9E+02 0.0041 24.8 1.3 18 170-187 19-36 (141)
10 PRK14341 lipoate-protein ligas 8.6 1.5E+02 0.0033 26.5 0.7 20 161-180 169-190 (213)
No 1
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=27.20 E-value=42 Score=22.56 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=16.0
Q ss_pred eeeeccCCccCCcchHhH
Q 026751 163 FAFIKPCGVHGDITLKDI 180 (233)
Q Consensus 163 F~lvKP~g~~GdvTL~DI 180 (233)
.+-|++.|.+|-||..||
T Consensus 20 l~~v~gtG~~GrI~k~Dv 37 (39)
T PF02817_consen 20 LSQVKGTGPGGRITKEDV 37 (39)
T ss_dssp GGGSSSSSTTSBBCHHHH
T ss_pred cccccccCCCCcEeHHHh
Confidence 347899999999999998
No 2
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=15.86 E-value=89 Score=24.77 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=16.0
Q ss_pred eeeeeeeccCCccCCcchHhHHhhh
Q 026751 160 AYPFAFIKPCGVHGDITLKDINQRI 184 (233)
Q Consensus 160 ayPF~lvKP~g~~GdvTL~DIN~rI 184 (233)
=|||+ -...-||+|.|+++-.
T Consensus 54 RYPF~----~~s~~dv~l~Df~~fF 74 (125)
T PF06744_consen 54 RYPFD----PDSSRDVSLADFARFF 74 (125)
T ss_pred CCCCC----CCCcccCCHHHHHHHh
Confidence 39998 3456789999998654
No 3
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=12.60 E-value=1.1e+02 Score=24.68 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=16.1
Q ss_pred eeeeccCCccCCcchHhHHhhhcC
Q 026751 163 FAFIKPCGVHGDITLKDINQRIHS 186 (233)
Q Consensus 163 F~lvKP~g~~GdvTL~DIN~rIl~ 186 (233)
|++|||+++.-. -+-.|-++|..
T Consensus 4 l~lIKPda~~~~-~~g~Ii~~i~~ 26 (134)
T cd04412 4 VCIIKPHAVSHG-LLGEILQQILD 26 (134)
T ss_pred EEEECchHhhcC-chHHHHHHHHH
Confidence 789999998654 23567666653
No 4
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=11.74 E-value=1.1e+02 Score=26.77 Aligned_cols=20 Identities=40% Similarity=0.853 Sum_probs=16.6
Q ss_pred eeeeeccCCccCC--cchHhHH
Q 026751 162 PFAFIKPCGVHGD--ITLKDIN 181 (233)
Q Consensus 162 PF~lvKP~g~~Gd--vTL~DIN 181 (233)
||..|.|||+.|- ++|++++
T Consensus 142 ~F~~I~PCGl~~~~vTSl~~~~ 163 (184)
T TIGR00214 142 PFSHINPCGYAGREMGSLNQFL 163 (184)
T ss_pred HhccEEcCCCCCCcEeeHHHHc
Confidence 6999999999985 5787764
No 5
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=11.44 E-value=1.3e+02 Score=21.86 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.5
Q ss_pred ccCCcchHhHHhhhcCC
Q 026751 171 VHGDITLKDINQRIHSP 187 (233)
Q Consensus 171 ~~GdvTL~DIN~rIl~p 187 (233)
+.|.++|.|+|+.+-..
T Consensus 10 v~G~~~l~~l~~~~~~~ 26 (81)
T PF03471_consen 10 VSGSTPLDDLNELLGLD 26 (81)
T ss_dssp EETTSBHHHHHHHHTS-
T ss_pred EEecCCHHHHHHHHCcC
Confidence 57999999999998875
No 6
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=10.85 E-value=1.3e+02 Score=25.88 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred CccCCcchHhHHhhhcCC
Q 026751 170 GVHGDITLKDINQRIHSP 187 (233)
Q Consensus 170 g~~GdvTL~DIN~rIl~p 187 (233)
..-|.+||.||++++...
T Consensus 21 ~iYG~~tl~~i~~~~~~~ 38 (146)
T PRK13015 21 AIYGHETLADVEALCRAA 38 (146)
T ss_pred CcCCCCCHHHHHHHHHHH
Confidence 456899999999999876
No 7
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=10.21 E-value=1.8e+02 Score=31.50 Aligned_cols=30 Identities=43% Similarity=0.489 Sum_probs=24.8
Q ss_pred ccccceeeeeeeeeccCCccCC-cchHhHHhhh
Q 026751 153 TKLASSVAYPFAFIKPCGVHGD-ITLKDINQRI 184 (233)
Q Consensus 153 ~k~~t~vayPF~lvKP~g~~Gd-vTL~DIN~rI 184 (233)
.|...+|.|||-.=| |.||- +||+||=.-|
T Consensus 483 ekAk~kV~~~~~~~k--WhDGq~itlaDil~~~ 513 (872)
T COG3889 483 EKAKIKVTYPFLDAK--WHDGQPITLADILKLI 513 (872)
T ss_pred CeeeeEEEEEecccc--ccCCCccCHHHHHHHH
Confidence 778899999987766 89996 9999996544
No 8
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=9.48 E-value=1.7e+02 Score=23.09 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=14.8
Q ss_pred CCCcceeeeeeeeCCCceeEEEEe
Q 026751 207 SGKPVVGKTKIRTEGGKGSITIMR 230 (233)
Q Consensus 207 SGK~Vv~~Tri~T~gg~GtITI~R 230 (233)
||++++.+++.-|+-|-=++||+|
T Consensus 46 sG~ati~l~~~it~~~~~tlTit~ 69 (81)
T PF03785_consen 46 SGNATINLTNPITDEGTLTLTITA 69 (81)
T ss_dssp TTEEEEE-SS--TT-SEEEEEEE-
T ss_pred CceEEEECCcccCCCceEEEEEEE
Confidence 999999999666654555666665
No 9
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=8.71 E-value=1.9e+02 Score=24.81 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=15.2
Q ss_pred CccCCcchHhHHhhhcCC
Q 026751 170 GVHGDITLKDINQRIHSP 187 (233)
Q Consensus 170 g~~GdvTL~DIN~rIl~p 187 (233)
..-|.+||.||++++..-
T Consensus 19 ~iYG~~tl~di~~~~~~~ 36 (141)
T TIGR01088 19 GVYGSQTLEEIVEIIETF 36 (141)
T ss_pred CcCCCCCHHHHHHHHHHH
Confidence 356899999999999875
No 10
>PRK14341 lipoate-protein ligase B; Provisional
Probab=8.59 E-value=1.5e+02 Score=26.50 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=16.0
Q ss_pred eeeeeeccCCccCC--cchHhH
Q 026751 161 YPFAFIKPCGVHGD--ITLKDI 180 (233)
Q Consensus 161 yPF~lvKP~g~~Gd--vTL~DI 180 (233)
-+|..|-|||.+|- ++|+++
T Consensus 169 ~~F~~IvPCGl~~~~vTSl~~~ 190 (213)
T PRK14341 169 SHFSGIVPCGISEHGVTSLVDL 190 (213)
T ss_pred hhhCcEecCCCCCCcEeeHHHh
Confidence 36999999999984 567764
Done!