Query 026751
Match_columns 233
No_of_seqs 61 out of 63
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 21:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wkj_A Nucleoside diphosphate 10.3 63 0.0022 25.5 0.2 24 162-186 4-27 (137)
2 2hur_A NDK, nucleoside diphosp 9.9 67 0.0023 25.5 0.2 25 162-187 5-29 (142)
3 3h8k_B Autocrine motility fact 9.8 1.1E+02 0.0038 18.8 1.2 15 8-22 13-27 (28)
4 1nhk_R Nucleoside diphosphate 9.5 71 0.0024 25.5 0.2 26 161-187 4-29 (144)
5 4hr2_A Nucleoside diphosphate 9.3 73 0.0025 25.6 0.2 25 161-186 9-33 (145)
6 3llb_A Uncharacterized protein 8.9 1.2E+02 0.0039 21.3 1.1 17 171-187 13-29 (83)
7 2dxe_A Nucleoside diphosphate 8.8 79 0.0027 25.7 0.2 25 161-186 9-33 (160)
8 2r2z_A Hemolysin; APC85144, en 8.8 1.2E+02 0.004 21.5 1.1 17 171-187 20-36 (93)
9 3lae_A UPF0053 protein HI0107; 8.7 1.2E+02 0.0041 21.1 1.1 17 171-187 13-29 (81)
10 3evo_A NDP kinase, NDK, nucleo 8.6 82 0.0028 25.3 0.2 26 159-185 6-31 (146)
No 1
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=10.35 E-value=63 Score=25.46 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=17.0
Q ss_pred eeeeeccCCccCCcchHhHHhhhcC
Q 026751 162 PFAFIKPCGVHGDITLKDINQRIHS 186 (233)
Q Consensus 162 PF~lvKP~g~~GdvTL~DIN~rIl~ 186 (233)
=|.+|||+++.-.. +-+|-+||..
T Consensus 4 Tl~iIKPdav~~~~-~g~Ii~~ie~ 27 (137)
T 1wkj_A 4 TFVMIKPDGVRRGL-VGEILARFER 27 (137)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred EEEEEChHHhhccc-HHHHHHHHHH
Confidence 38899999986543 4667666643
No 2
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=9.88 E-value=67 Score=25.50 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=18.0
Q ss_pred eeeeeccCCccCCcchHhHHhhhcCC
Q 026751 162 PFAFIKPCGVHGDITLKDINQRIHSP 187 (233)
Q Consensus 162 PF~lvKP~g~~GdvTL~DIN~rIl~p 187 (233)
=|.+|||+++.-.. +-+|-+||...
T Consensus 5 Tl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (142)
T 2hur_A 5 TFSIIKPNAVAKNV-IGNIFARFEAA 29 (142)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEChHHHhccc-HHHHHHHHHHC
Confidence 48999999986543 45777777543
No 3
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=9.79 E-value=1.1e+02 Score=18.85 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhccc
Q 026751 8 CRETYSQIKRRRMLQ 22 (233)
Q Consensus 8 ~~ee~~q~KRRRmLq 22 (233)
.+++..+.-|||||+
T Consensus 13 Rk~~mi~~ARrryl~ 27 (28)
T 3h8k_B 13 RKDELLQQARKRFLN 27 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 345666778888884
No 4
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=9.51 E-value=71 Score=25.48 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=18.4
Q ss_pred eeeeeeccCCccCCcchHhHHhhhcCC
Q 026751 161 YPFAFIKPCGVHGDITLKDINQRIHSP 187 (233)
Q Consensus 161 yPF~lvKP~g~~GdvTL~DIN~rIl~p 187 (233)
.=|.+|||+++.-.. +-+|-+||...
T Consensus 4 rTl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (144)
T 1nhk_R 4 RTLSIIKPDGLEKGV-IGKIISRFEEK 29 (144)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEEChHHHhccc-HHHHHHHHHHC
Confidence 348999999986554 45777777543
No 5
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=9.26 E-value=73 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=17.4
Q ss_pred eeeeeeccCCccCCcchHhHHhhhcC
Q 026751 161 YPFAFIKPCGVHGDITLKDINQRIHS 186 (233)
Q Consensus 161 yPF~lvKP~g~~GdvTL~DIN~rIl~ 186 (233)
.=|++|||+++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~g~Ii~rie~ 33 (145)
T 4hr2_A 9 RTLSIIKPDAVAKNV-IGQIYSRFEN 33 (145)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred HeEEEEChHHhhcCC-HHHHHHHHHH
Confidence 458999999876543 4567777643
No 6
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=8.90 E-value=1.2e+02 Score=21.30 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.8
Q ss_pred ccCCcchHhHHhhhcCC
Q 026751 171 VHGDITLKDINQRIHSP 187 (233)
Q Consensus 171 ~~GdvTL~DIN~rIl~p 187 (233)
++|.+.|.|+|+.+-..
T Consensus 13 v~G~~~l~dl~~~l~~~ 29 (83)
T 3llb_A 13 VKALTPVDAFNDFFGSE 29 (83)
T ss_dssp EETTCBHHHHHHHHCCC
T ss_pred EEccCCHHHHHHHhCCC
Confidence 67999999999998764
No 7
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=8.78 E-value=79 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=17.8
Q ss_pred eeeeeeccCCccCCcchHhHHhhhcC
Q 026751 161 YPFAFIKPCGVHGDITLKDINQRIHS 186 (233)
Q Consensus 161 yPF~lvKP~g~~GdvTL~DIN~rIl~ 186 (233)
.=|.+|||+++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~G~Ii~rie~ 33 (160)
T 2dxe_A 9 RTLVIIKPDAVVRGL-IGEIISRFEK 33 (160)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred eEEEEEChHHhhccc-HHHHHHHHHH
Confidence 458999999986553 4667666643
No 8
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=8.76 E-value=1.2e+02 Score=21.53 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=15.1
Q ss_pred ccCCcchHhHHhhhcCC
Q 026751 171 VHGDITLKDINQRIHSP 187 (233)
Q Consensus 171 ~~GdvTL~DIN~rIl~p 187 (233)
+.|.++|.|+|+.+-..
T Consensus 20 v~G~~~l~dl~~~l~~~ 36 (93)
T 2r2z_A 20 VQGRMLIDEFNEVFETD 36 (93)
T ss_dssp EETTSBHHHHHHHHTCC
T ss_pred EECCCCHHHHHHHhCCC
Confidence 78999999999998765
No 9
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=8.65 E-value=1.2e+02 Score=21.11 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.9
Q ss_pred ccCCcchHhHHhhhcCC
Q 026751 171 VHGDITLKDINQRIHSP 187 (233)
Q Consensus 171 ~~GdvTL~DIN~rIl~p 187 (233)
++|.++|.|+|+.+-..
T Consensus 13 v~g~~~l~dl~~~l~~~ 29 (81)
T 3lae_A 13 IDGSANLRDLNKMFNWE 29 (81)
T ss_dssp EETTCBHHHHHHHHCCC
T ss_pred EEeeCCHHHHHHHhCCC
Confidence 67999999999998765
No 10
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=8.55 E-value=82 Score=25.27 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=18.1
Q ss_pred eeeeeeeeccCCccCCcchHhHHhhhc
Q 026751 159 VAYPFAFIKPCGVHGDITLKDINQRIH 185 (233)
Q Consensus 159 vayPF~lvKP~g~~GdvTL~DIN~rIl 185 (233)
+=.=|++|||+++.... +-+|=+||.
T Consensus 6 ~e~Tl~iIKPdav~~~~-~g~Ii~~ie 31 (146)
T 3evo_A 6 LQRTLVLIKPDAFERSL-VAEIMGRIE 31 (146)
T ss_dssp CEEEEEEECHHHHHTTC-HHHHHHHHH
T ss_pred ceeEEEEEChHHHhccc-HHHHHHHHH
Confidence 34568999999987553 456666664
Done!