BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026752
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 140/227 (61%), Positives = 165/227 (72%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M AHG KNLVFSSSATVYG P+ +P E P NPYG++K FIEE+ RD+ ++D W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
++LLRYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGTGV
Sbjct: 179 NVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD YA+ A+ EL W A G+D MC D W W +NP G+
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 140/227 (61%), Positives = 165/227 (72%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M AHG KNLVFSSSATVYG P+ +P E P NPYG++K FIEE+ RD+ ++D W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
++LLRYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGTGV
Sbjct: 179 NVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD YA+ A+ EL W A G+D MC D W W +NP G+
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 293 bits (750), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 140/227 (61%), Positives = 164/227 (72%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M AHG KNLVFSSSATVYG P+ +P E P NPYG++K FIEE+ RD+ ++D W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
+LLRYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGTGV
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD YA+ A+ EL W A G+D MC D W W +NP G+
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 270 bits (689), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 131/226 (57%), Positives = 154/226 (68%), Gaps = 1/226 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWK 60
M K +VFSSSATVYG P+ P E FPL A NPYG+TKL E+I RDV +D W+
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWR 175
Query: 61 IILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVR 120
+ LRYFNPVGAH SG IGEDP GIPNNLMP+V QVAVG+ +L VFG+DY T DGTGVR
Sbjct: 176 VATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVR 235
Query: 121 DYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG 180
DYIHV+DLA GHIAAL L+ V NLGTG+G SVLE+V AFEKASG+ +P
Sbjct: 236 DYIHVVDLARGHIAALDALERRDASLTV-NLGTGRGYSVLEVVRAFEKASGRAVPYELVA 294
Query: 181 RRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RRPGD YA+ A + WKA+ ++ MC D W W NP G+
Sbjct: 295 RRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPRGF 340
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 265 bits (678), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 265 bits (678), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 265 bits (677), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPACWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +P+G++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 263 bits (673), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 124/227 (54%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +P+G++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 263 bits (672), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 159/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 263 bits (672), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 124/227 (54%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +P+G++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + +
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 180 GRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 226
RR GD +A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 162/235 (68%), Gaps = 8/235 (3%)
Query: 1 MAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSD 56
M + VFSSSATVYG +P ++P EE PL NPYG TK IE I D++ SD
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD 181
Query: 57 SE-WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKD 115
+ WK +LRYFNP+GAHPSG IGEDP GIPNNL+P++ QVAVGRR +L +FG DY ++D
Sbjct: 182 KKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD 241
Query: 116 GTGVRDYIHVIDLADGHIAALHKLD---DPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
GT +RDYIHV+DLA GHIAAL L+ + + C +NLG+GKG++V E+ AF KASG
Sbjct: 242 GTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGI 301
Query: 173 KIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 227
+P +GRR GD + A +A+REL W+ + +++ C+D W W ++NP+GY+
Sbjct: 302 DLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQ 356
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 4/220 (1%)
Query: 9 LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFN 68
+FSS+A YG V TEE N YG TKL IE++ + S + + RYFN
Sbjct: 113 FIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLH-WYSQASNLRYKIFRYFN 171
Query: 69 PVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDL 128
GA P+G IGED R +L+P V QVA+G+R ++ +FG DY+T DGT +RDYIHV DL
Sbjct: 172 VAGATPNGIIGEDHRP-ETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230
Query: 129 ADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 188
H L L + + YNLG G G SV E+V A + + +IP + RR GD
Sbjct: 231 VAAHFLGLKDLQNGG-ESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPAR 289
Query: 189 VYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYE 227
+ AS+ KA+ +L W +Y + + WNW K P GYE
Sbjct: 290 LVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGYE 329
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 130/258 (50%), Gaps = 28/258 (10%)
Query: 1 MAAHGCKNLVFSSSATVYGWP---KVVPCTEEFPLEAM----NPYGRTKLFIEEICRDVH 53
M H C ++FSSSA ++G P V E + A +PYG +KL E + RD
Sbjct: 131 MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCA 190
Query: 54 RSDSEWKIILLRYFNPVGAHPSGKIGEDPRG----IPNNLMPFVTQVAVGRR-------- 101
+ K I LRYFN GAH G IGE +G IP L ++ +A +R
Sbjct: 191 EAYG-IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDAS 249
Query: 102 --PELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLD-----DPKIGCEVYNLGTG 154
+ +FGTDY T DGT VRDY+HV DLA HI AL ++ D V+NLGT
Sbjct: 250 TDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS 309
Query: 155 KGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYG-IDEMCR 213
+G SV E++ K +G IP+ + GRR GD + A++ KA L WK KY ++ +
Sbjct: 310 RGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIME 369
Query: 214 DQWNWASKNPYGYESSNS 231
W + +P GY S +
Sbjct: 370 TSWKFQRTHPNGYASQEN 387
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 19/212 (8%)
Query: 4 HGCKNLVFSSSA-TVYG-WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKI 61
+G + LVF+S+ +YG P+ E +P +PY +K E V+ K
Sbjct: 107 YGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYL-SVYGQSYGLKW 165
Query: 62 ILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRD 121
+ LRY N G +DP G + F +V G +T++ +G VRD
Sbjct: 166 VSLRYGNVYGPR------QDPHGEAGVVAIFAERVLKGL--PVTLYARKTPGDEGC-VRD 216
Query: 122 YIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR 181
Y++V D+A+ H AL L+ +YN+GTG+G + E++ A +A+GK + +
Sbjct: 217 YVYVGDVAEAHALALFSLEG------IYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPP 270
Query: 182 RPGDAEIVYASTGKAERELNWKAKYGIDEMCR 213
RPGD E S K W+ K G E R
Sbjct: 271 RPGDLERSVLSPLKLMAH-GWRPKVGFQEGIR 301
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 24/215 (11%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G +V S+ VYG +P E+ PL +PY +K+ +E + R+ ++ ++
Sbjct: 110 GVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIV 169
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIH 124
R+FN G P P+ L+P + + R EL V G DG RD+ +
Sbjct: 170 RFFNVYG----------PGERPDALVPRLCANLLTRN-ELPVEG------DGEQRRDFTY 212
Query: 125 VIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPG 184
+ D+ D + AL P V N G+G+ SV +++ + A+ + + RP
Sbjct: 213 ITDVVD-KLVALANRPLPS----VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPN 266
Query: 185 DAEIVYASTGKAERELNWKA-KYGIDEMCRDQWNW 218
+ A T R++ ++ GI+E R W
Sbjct: 267 EITEFRADTALQTRQIGERSGGIGIEEGIRLTLEW 301
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 24/228 (10%)
Query: 2 AAHGCKNLVFSSSATVY--GWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEW 59
+A G + VF+SS VY P+ +P TE+ PL +PYG TKL EE+ R H+
Sbjct: 114 SAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVR-FHQRSGAM 172
Query: 60 KIILLRYFNPVGAHPSGKIGED-----PRGIPNNLMPFVTQ------VAVGRRPELTVFG 108
+ ++LR+ + A + + ED PR L P + Q A+ + G
Sbjct: 173 ETVILRFSHTQDA--TELLDEDSFFSGPRFF---LRPRIHQQQNFGNAAIAELLQSRDIG 227
Query: 109 --TDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAF 166
+ ++ G +H+ D D L LD P+ +NLG + ++
Sbjct: 228 EPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKI 287
Query: 167 EKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRD 214
+G I V PGD + S + L ++A++ +D M +
Sbjct: 288 AALTGLPIVTVDF---PGDGVYYHTSNERIRNTLGFEAEWTMDRMLEE 332
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G + +VF+SS+TVYG V+P EE P + ++ YG K E +C R + + +
Sbjct: 100 GVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAV 158
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPE-LTVFGTDYSTKDGTGVRDYI 123
RY N VG PR + F+ ++ R P L V G DGT + Y+
Sbjct: 159 RYANVVG----------PRLRHGVIYDFIMKLR--RNPNVLEVLG------DGTQRKSYL 200
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASG-----KKIPLVK 178
+V D + +AA K ++ N+G VL++ + G + +P
Sbjct: 201 YVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTP 260
Query: 179 SGRR-PGDAEIVYASTGKAERELNWK 203
GR PGD + + + K + W+
Sbjct: 261 DGRGWPGDVKYMTLAVTKLMKLTGWR 286
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G + +VF+SS+TVYG V+P EE P + ++ YG K E +C R + + +
Sbjct: 104 GVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAV 162
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPE-LTVFGTDYSTKDGTGVRDYI 123
RY N VG PR + F+ ++ R P L V G DGT + Y+
Sbjct: 163 RYANVVG----------PRLRHGVIYDFIMKLR--RNPNVLEVLG------DGTQRKSYL 204
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASG-----KKIPLVK 178
+V D + +AA K ++ N+G VL++ + G + +P
Sbjct: 205 YVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTP 264
Query: 179 SGRR-PGDAEIVYASTGKAERELNWK 203
GR PGD + + + K + W+
Sbjct: 265 DGRGWPGDVKYMTLAVTKLMKLTGWR 290
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 26/217 (11%)
Query: 9 LVFSSSATVYG-WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYF 67
LV S+ VYG K TEE PL +PY +K + I +++ + +I+ R
Sbjct: 144 LVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKT-YQLPVIVTRCS 202
Query: 68 NPVGAHPSGKIGEDPRGIPNNLMPF-VTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVI 126
N G P P L+P VT G++ L ++G DG VRD++HV
Sbjct: 203 NNYG----------PYQYPEKLIPLXVTNALEGKK--LPLYG------DGLNVRDWLHVT 244
Query: 127 DLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK-KIPLVKSGRRPGD 185
D LHK ++G EVYN+G + +E+V GK K + R G
Sbjct: 245 DHCSAIDVVLHK---GRVG-EVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGH 300
Query: 186 AEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKN 222
+ K + E +W+ KY ++ ++ W KN
Sbjct: 301 DRRYAINAEKXKNEFDWEPKYTFEQGLQETVQWYEKN 337
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 38/222 (17%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKL----FIEEICRDVHRSD 56
M G +VF+S++TVYG KV+P E++P ++ YG +KL IE C H D
Sbjct: 101 MRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYC---HTFD 157
Query: 57 SE-WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRP-ELTVFGTDYSTK 114
+ W + R+ N +G + + D F+ ++ R P EL + G
Sbjct: 158 MQAW---IYRFANVIGRRSTHGVIYD----------FIMKLK--RNPEELEILG------ 196
Query: 115 DGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSV--LEMVAAFEKASGK 172
+G + YI++ D D + L D ++ ++N+G+ V + + E
Sbjct: 197 NGEQNKSYIYISDCVDAMLFGLRG--DERVN--IFNIGSEDQIKVKRIAEIVCEELGLSP 252
Query: 173 KIPLVKSGRR-PGDAEIVYASTGKAERELNWKAKYGIDEMCR 213
+ R GD ++ S K +R L WK +Y +E R
Sbjct: 253 RFRFTGGDRGWKGDVPVMLLSIEKLKR-LGWKPRYNSEEAVR 293
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 116 GTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP 175
G RD+I V D+A+G IA D G VYN+ +GK TS+ ++ + +G
Sbjct: 254 GVATRDFIFVEDVANGLIAC--AADGTPGG--VYNIASGKETSIADLATKINEITGNNTE 309
Query: 176 LVKSGRRPGD-AEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKN 222
L + +RP D + + S KA REL + A ID+ R W N
Sbjct: 310 LDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKAN 357
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 82 PRGIPNNLMP-FVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLD 140
P P L+P + + ++G + + ++GT G VRD+++V D H+ A+ +
Sbjct: 184 PYQFPEKLIPKTIIRASLGLK--IPIYGT------GKNVRDWLYVED----HVRAIELVL 231
Query: 141 DPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR-RPGDAEIVYASTGKAERE 199
E+YN+ G+ + LE+V + GK L++ RPG + K R+
Sbjct: 232 LKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRD 291
Query: 200 LNWKAKYGIDEMCRDQWNWASKNPYGYE 227
L W+ KY DE + +W KN + ++
Sbjct: 292 LKWRPKYTFDEGIKKTIDWYLKNEWWWK 319
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 6 CKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLR 65
++ +++S++ YG +P E+ + ++PY TK ++ E+ DV + I LR
Sbjct: 145 VQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTK-YVNELYADVFSRCYGFSTIGLR 203
Query: 66 YFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGTGVRDYIH 124
YFN G +DP G ++P T + G D Y DG RD+ +
Sbjct: 204 YFNVFGRR------QDPNGAYAAVIPKWTSSMIQ--------GDDVYINGDGETSRDFCY 249
Query: 125 VIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEK------ASGKKIPLVK 178
+ + ++ A D + +VYN+ G TS+ ++ A S + P+ +
Sbjct: 250 IENTVQANLLAATAGLDAR--NQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYR 307
Query: 179 SGRRPGDAEIVYASTGKAERELNWKAKYGI 208
R GD A KA + L + KY +
Sbjct: 308 DFRE-GDVRHSLADISKAAKLLGYAPKYDV 336
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 28/226 (12%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 136 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 194
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGT 117
+K I LRYFN G +DP G ++P T + G D Y DG
Sbjct: 195 FKTIGLRYFNVFGRR------QDPNGAYAAVIPKWTAAMLK--------GDDVYINGDGE 240
Query: 118 GVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASG-----K 172
RD+ ++ ++ +I + D K +YN+ G T++ E+
Sbjct: 241 TSRDFCYIDNVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNELSGYIYDELNLIHHID 298
Query: 173 KIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNW 218
K+ + R GD A KA L ++ I E R W
Sbjct: 299 KLSIKYREFRSGDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 28/226 (12%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 149 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 207
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGT 117
+K I LRYFN G +DP G ++P T + G D Y DG
Sbjct: 208 FKTIGLRYFNVFGRR------QDPNGAYAAVIPKWTAAMLK--------GDDVYINGDGE 253
Query: 118 GVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASG-----K 172
RD+ ++ ++ +I + D K +YN+ G T++ E+
Sbjct: 254 TSRDFCYIDNVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNELSGYIYDELNLIHHID 311
Query: 173 KIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNW 218
K+ + R GD A KA L ++ I E R W
Sbjct: 312 KLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 357
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 28/226 (12%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 136 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 194
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGT 117
+K I LRYFN G +DP G ++P T + G D Y DG
Sbjct: 195 FKTIGLRYFNVFGRR------QDPNGAYAAVIPKWTAAMLK--------GDDVYINGDGE 240
Query: 118 GVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASG-----K 172
RD+ ++ ++ +I + D K +YN+ G T++ E+
Sbjct: 241 TSRDFCYIDNVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNELSGYIYDELNLIHHID 298
Query: 173 KIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNW 218
K+ + R GD A KA L ++ I E R W
Sbjct: 299 KLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 28/226 (12%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 130 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 188
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGT 117
+K I LRYFN G +DP G ++P T + G D Y DG
Sbjct: 189 FKTIGLRYFNVFGRR------QDPNGAYAAVIPKWTAAMLK--------GDDVYINGDGE 234
Query: 118 GVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASG-----K 172
RD+ ++ ++ +I + D K +YN+ G T++ E+
Sbjct: 235 TSRDFCYIDNVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNELSGYIYDELNLIHHID 292
Query: 173 KIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNW 218
K+ + R GD A KA L ++ I E R W
Sbjct: 293 KLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 338
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 86/221 (38%), Gaps = 36/221 (16%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G K L+ +A YG P VP + P YG I + + S+ ++ L
Sbjct: 127 GVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYG-----ISKTAGEAFLMMSDVPVVSL 181
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIH 124
R N G P IG P F ++ G++ F +D VRD++
Sbjct: 182 RLANVTG--PRLAIGPIPT--------FYKRLKAGQK----CFCSDT-------VRDFLD 220
Query: 125 VIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTS---VLEMVAAFEKAS-GKKIPLVKSG 180
+ D IA L + G V+N+ TG+G S V ++V + A+ + +P+V G
Sbjct: 221 MSDFL--AIADLSLQEGRPTG--VFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPG 276
Query: 181 RRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASK 221
D V K E E WKAK + Q W K
Sbjct: 277 AD--DVPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDK 315
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 89/231 (38%), Gaps = 25/231 (10%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G +V S+ VYG TE PLE +PY +K + + R HR+ + +
Sbjct: 118 GVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYG-LDVRIT 176
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMP-FVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R N G P P L+P FVT + G L ++G DG VR+++
Sbjct: 177 RCCNNYG----------PYQHPEKLIPLFVTNLLDG--GTLPLYG------DGANVREWV 218
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV-KSGRR 182
H D H + + E+Y++G G + E+ + G V K R
Sbjct: 219 HT----DDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADR 274
Query: 183 PGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESSNSTS 233
G GK EREL ++ + + W +N +E +T+
Sbjct: 275 KGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRGWWEPLKATA 325
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 56/149 (37%), Gaps = 19/149 (12%)
Query: 82 PRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDD 141
P P L+P V A+ +P L ++G G +RD+++V D H ALH +
Sbjct: 200 PYHFPEKLIPLVILNALEGKP-LPIYGK------GDQIRDWLYVED----HARALHMVVT 248
Query: 142 PKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR--------RPGDAEIVYAST 193
E YN+G L++V + +P S R RPG
Sbjct: 249 EGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDA 308
Query: 194 GKAERELNWKAKYGIDEMCRDQWNWASKN 222
GK REL WK + R W N
Sbjct: 309 GKISRELGWKPLETFESGIRKTVEWYLAN 337
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 89/231 (38%), Gaps = 25/231 (10%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G +V S+ VYG TE PLE +PY +K + + R HR+ + +
Sbjct: 118 GVGRVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYG-LDVRIT 176
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMP-FVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R N G P P L+P FVT + G L ++G DG VR+++
Sbjct: 177 RCCNNYG----------PYQHPEKLIPLFVTNLLDG--GTLPLYG------DGANVREWV 218
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV-KSGRR 182
H D H + + E+Y++G G + E+ + G V K R
Sbjct: 219 HT----DDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADR 274
Query: 183 PGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESSNSTS 233
G GK EREL ++ + + W +N +E +T+
Sbjct: 275 KGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRGWWEPLKATA 325
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 22/209 (10%)
Query: 6 CKNLVFSSSATVYGW--PKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIIL 63
C+ L SS YG P+ P +EE L M+PYG +K + + R ++ II
Sbjct: 119 CRILTIGSSEE-YGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYG-MDIIH 176
Query: 64 LRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R FN +G P +G + + + + + ++ + G + +D T VRD +
Sbjct: 177 TRTFNHIG--PGQSLG----FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIV 230
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKI--PLVKSGR 181
L + K G +VYN+ +G GT + +++ + KI L
Sbjct: 231 QAYWLLSQY---------GKTG-DVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQL 280
Query: 182 RPGDAEIVYASTGKAERELNWKAKYGIDE 210
RP + + S + + WK + +++
Sbjct: 281 RPSEVPTLIGSNKRLKDSTGWKPRIPLEK 309
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 31/232 (13%)
Query: 9 LVFSSSATVYGWPKVVPCTEEF-----PLEAMNPYGRTKLFIEEICRDVHRSDSEWKIIL 63
L+ +S++ VYG P+V P +E++ P+ Y K E C + + ++ +
Sbjct: 136 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEG-VEVRV 194
Query: 64 LRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R FN G D R + N F+ Q G LTV+G+ G+ R +
Sbjct: 195 ARIFNTFGPRXHXN---DGRVVSN----FILQALQGE--PLTVYGS------GSQTRAFQ 239
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEK--ASGKKIPLVKSGR 181
+V DL +G +A L + + V NLG + ++LE + SG +I + +
Sbjct: 240 YVSDLVNGLVA----LXNSNVSSPV-NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 294
Query: 182 RPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESSNSTS 233
D + KA+ L W+ ++E ++ K Y+++N S
Sbjct: 295 --DDPQKRKPDIKKAKLXLGWEPVVPLEEGLNKAIHYFRKE-LEYQANNQGS 343
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 37/230 (16%)
Query: 9 LVFSSSATVYGWPKVVPCTEEF-----PLEAMNPYGRTKLFIEEICRDVHRSDSEWKIIL 63
L+ +S++ VYG P+V P +E++ P+ Y K E +C + + ++ +
Sbjct: 114 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEG-VEVRV 172
Query: 64 LRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R FN G P + D R + N F+ Q G LTV+G+ G+ R +
Sbjct: 173 ARIFNTFG--PRMHMN-DGRVVSN----FILQALQGE--PLTVYGS------GSQTRAFQ 217
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEK--ASGKKIPLVKSGR 181
+V DL +G +A L + + V NLG + ++LE + SG +I + +
Sbjct: 218 YVSDLVNGLVA----LMNSNVSSPV-NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 272
Query: 182 RPGDAEIVYASTGKAERELNWKAKYGIDE-------MCRDQWNWASKNPY 224
D + KA+ L W+ ++E R + + + N Y
Sbjct: 273 --DDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQY 320
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 46/227 (20%)
Query: 12 SSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLR-YFNPV 70
+S++ +YG + +P E P +PYG KL+ + W ++ R +N
Sbjct: 154 ASTSELYGKVQEIPQKETTPFYPRSPYGAAKLY------------AYWIVVNFREAYNLF 201
Query: 71 GAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD--YSTKDGTGVRDYIHVIDL 128
+ E PR N FVT+ + R G +S + RD+ H D
Sbjct: 202 AVNGILFNHESPRRGAN----FVTR-KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDY 256
Query: 129 ADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKI-----------PLV 177
+ L D+P E + + TG+ SV E V GK I
Sbjct: 257 VEAMWLMLQN-DEP----EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCK 311
Query: 178 KSGR----------RPGDAEIVYASTGKAERELNWKAKYGIDEMCRD 214
++G+ RP + + + KA+++LNWK + DE+ R+
Sbjct: 312 ETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVRE 358
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 47/218 (21%)
Query: 12 SSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVG 71
+S++ ++G + E P +PYG KL+ W I + Y G
Sbjct: 136 ASTSEMFGLIQAERQDENTPFYPRSPYGVAKLY------------GHW--ITVNYRESFG 181
Query: 72 AHPSGKI---GEDP-RGI---PNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIH 124
H S I E P RGI + V ++ +G++ EL + D + +D DY+
Sbjct: 182 LHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVD-AKRDWGFAGDYVE 240
Query: 125 VI------DLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 178
+ D AD ++ A + C++ AFE +K
Sbjct: 241 AMWLMLQQDKADDYVVATGVTTTVRDMCQI----------------AFEHVGLDYRDFLK 284
Query: 179 ---SGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCR 213
+ RP + +++ + KA+R L WK + +DE+ R
Sbjct: 285 IDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIR 322
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 40/221 (18%)
Query: 8 NLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYF 67
+VF+SS V+G P P +EF + YG K E + D R +F
Sbjct: 135 RVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRG---------FF 185
Query: 68 NPVGAH-PS-----GKIGEDPRGIPNNLM--PFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
+ +G P+ GK G +N++ P V Q AV PE +
Sbjct: 186 DGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPE--------------SI 231
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 179
R + A G + +D K+G G +V E + A K +G+K V
Sbjct: 232 RHWHASPRSAVGFLIHGAXIDVEKVGPRRNLSXPGLSATVGEQIEALRKVAGEKA--VAL 289
Query: 180 GRRPGDAEIVYASTG-------KAERELNWKAKYGIDEMCR 213
RR + I G K REL + A+ +E+ +
Sbjct: 290 IRREPNEXIXRXCEGWAPGFEAKRARELGFTAESSFEEIIQ 330
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 28/236 (11%)
Query: 2 AAH--GCKNLVFSSSATVYGWPKVVPCTE----EFPLEAMN-PYGRTKLFIEEICRDVHR 54
AAH L+F S+ +Y P E + LE N PY K+ ++C +R
Sbjct: 93 AAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR 152
Query: 55 S-DSEWKIIL-LRYFNPV-GAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDY 111
+++ ++ + P HPS + IP L F + + P++ V+G+
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPS-----NSHVIPALLRRF-HEATAQKAPDVVVWGS-- 204
Query: 112 STKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKGTSVLEMVAAF 166
GT +R+++HV D+A I + H+ L++ + N+GTG ++ E+
Sbjct: 205 ----GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTI 260
Query: 167 EKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKN 222
K G K +V +P + +L W + ++ + W +N
Sbjct: 261 AKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 32/238 (13%)
Query: 2 AAH--GCKNLVFSSSATVYGWPKVV--PCTE----EFPLEAMN-PYGRTKLFIEEICRDV 52
AAH L+F S+ +Y PK+ P E + LE N PY K+ ++C
Sbjct: 93 AAHQNDVNKLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESY 150
Query: 53 HRS-DSEWKIIL-LRYFNPV-GAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGT 109
+R +++ ++ + P HPS + IP L F + P++ V+G+
Sbjct: 151 NRQYGRDYRSVMPTNLYGPHDNFHPS-----NSHVIPALLRRF-HEATAQNAPDVVVWGS 204
Query: 110 DYSTKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKGTSVLEMVA 164
GT +R+++HV D+A I + H+ L++ + N+GTG ++ E+
Sbjct: 205 ------GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQ 258
Query: 165 AFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKN 222
K G K +V +P + +L W + ++ + W +N
Sbjct: 259 TIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 102 PELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKG 156
P++ V+G+ GT +R+++HV D+A I + H+ L++ + N+GTG
Sbjct: 197 PDVVVWGS------GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVD 250
Query: 157 TSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQW 216
++ E+ K G K +V +P + +L W + ++ +
Sbjct: 251 CTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTY 309
Query: 217 NWASKN 222
W +N
Sbjct: 310 QWFLEN 315
>pdb|1PJQ|A Chain A, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJQ|B Chain B, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJS|A Chain A, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
pdb|1PJS|B Chain B, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
Length = 457
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCE----VYNLGTGKGTSVLEMVAAFEKASGKKIP 175
RDY + L GH+ +LD + E V+ +G + ++ E + AF + +
Sbjct: 347 RDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVA 406
Query: 176 LVKSGRRPGDAEI--VYASTGKAERELNWKAKYGIDEMC--RDQWNWASKN 222
LV++G + V G+ +++ A + + RD+ NW S +
Sbjct: 407 LVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALRDKLNWFSNH 457
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 102 PELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKG 156
P++ V+G+ GT +R+++HV D+A I + H+ L++ + N+GTG
Sbjct: 197 PDVVVWGS------GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVD 250
Query: 157 TSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQW 216
++ E+ K G K +V +P + +L W + ++ +
Sbjct: 251 CTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTY 309
Query: 217 NWASKN 222
W +N
Sbjct: 310 QWFLEN 315
>pdb|1PJT|A Chain A, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
pdb|1PJT|B Chain B, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
Length = 457
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCE----VYNLGTGKGTSVLEMVAAFEKASGKKIP 175
RDY + L GH+ +LD + E V+ +G + ++ E + AF + +
Sbjct: 347 RDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVA 406
Query: 176 LVKSGRRPGDAEI--VYASTGKAERELNWKAKYGIDEMC--RDQWNWASKN 222
LV++G + V G+ +++ A + + RD+ NW S +
Sbjct: 407 LVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALRDKLNWFSNH 457
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 102 PELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKG 156
P++ V+G+ GT +R+++HV D+A I + H+ L++ + N+GTG
Sbjct: 197 PDVVVWGS------GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVD 250
Query: 157 TSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQW 216
++ E+ K G K +V +P + +L W + ++ +
Sbjct: 251 CTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTY 309
Query: 217 NWASKN 222
W +N
Sbjct: 310 QWFLEN 315
>pdb|2JZC|A Chain A, Nmr Solution Structure Of Alg13: The Sugar Donor Subunit
Of A Yeast N-Acetylglucosamine Transferase. Northeast
Structural Genomics Consortium Target Yg1
Length = 224
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 7 KNLVFSSSATVYGWPKVVPC--TEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
K L + ATV +PK+V C ++EF E + YG +L I+ R+ SE++ ++
Sbjct: 29 KALFVTCGATV-PFPKLVSCVLSDEFCQELIQ-YGFVRLIIQ-FGRNY---SSEFEHLVQ 82
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIH 124
G S KI D G + +V +L V G D+STK + +RDY
Sbjct: 83 ER---GGQRESQKIPIDQFGCGDTARQYVLM-----NGKLKVIGFDFSTKMQSIIRDYSD 134
Query: 125 VI--DLADGHIAALHKLDDPKIGC 146
++ G I +L+ P I C
Sbjct: 135 LVISHAGTGSILDSLRLNKPLIVC 158
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 32/238 (13%)
Query: 2 AAH--GCKNLVFSSSATVYGWPKVV--PCTE----EFPLEAMN-PYGRTKLFIEEICRDV 52
AAH L+F S+ +Y PK+ P E + LE N PY K+ ++C
Sbjct: 93 AAHQNDVNKLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESY 150
Query: 53 HRS-DSEWKIIL-LRYFNPV-GAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGT 109
+R +++ ++ + P HPS + IP L F + P++ V+G+
Sbjct: 151 NRQYGRDYRSVMPTNLYGPHDNFHPS-----NSHVIPALLRRF-HEATAQNAPDVVVWGS 204
Query: 110 DYSTKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKGTSVLEMVA 164
GT +R+++HV D+A I + H+ L++ + N+GTG ++ ++
Sbjct: 205 ------GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDLAQ 258
Query: 165 AFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKN 222
K G K +V +P + +L W + ++ + W +N
Sbjct: 259 TIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|2KS6|A Chain A, Nmr Solution Structure Of Alg13 --- Obtained With
Iterative Cs-Rosetta From Backbone Nmr Data
Length = 201
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 7 KNLVFSSSATVYGWPKVVPC--TEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
K L + ATV +PK+V C ++EF E + YG +L I+ R+ SE++ ++
Sbjct: 6 KALFVTCGATV-PFPKLVSCVLSDEFCQELIQ-YGFVRLIIQ-FGRNY---SSEFEHLVQ 59
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIH 124
G S KI D G + +V +L V G D+STK + +RDY
Sbjct: 60 ---ERGGQRESQKIPIDQFGCGDTARQYVLM-----NGKLKVIGFDFSTKMQSIIRDYSD 111
Query: 125 VI--DLADGHIAALHKLDDPKIGC 146
++ G I +L+ P I C
Sbjct: 112 LVISHAGTGSILDSLRLNKPLIVC 135
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 35/185 (18%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHRSD 56
+G K ++SSA +Y K + T + +P E + YG KL EE+C+ ++ D
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNK-D 193
Query: 57 SEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTK-- 114
+ + R+ N G + K G + A R+ + + TD
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGRE-----------AAPAAFCRKAQTS---TDRFEMWG 239
Query: 115 DGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTS---VLEMVAAFEKASG 171
DG R + + + +G + L K D E N+G+ + S + EMV +FE+
Sbjct: 240 DGLQTRSFTFIDECVEG-VLRLTKSDFR----EPVNIGSDEMVSMNEMAEMVLSFEE--- 291
Query: 172 KKIPL 176
KK+P+
Sbjct: 292 KKLPI 296
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 35/185 (18%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHRSD 56
+G K ++SSA +Y K + T + +P E + YG KL EE+C+ ++ D
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNK-D 193
Query: 57 SEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTK-- 114
+ + R+ N G + K G + A R+ + + TD
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREK-----------APAAFCRKAQTS---TDRFEMWG 239
Query: 115 DGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTS---VLEMVAAFEKASG 171
DG R + + + +G + L K D E N+G+ + S + EMV +FE+
Sbjct: 240 DGLQTRSFTFIDECVEG-VLRLTKSDFR----EPVNIGSDEMVSMNEMAEMVLSFEE--- 291
Query: 172 KKIPL 176
KK+P+
Sbjct: 292 KKLPI 296
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 35/185 (18%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHRSD 56
+G K ++SSA +Y K + T + +P E + YG +L EE+C+ ++ D
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNK-D 193
Query: 57 SEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTK-- 114
+ + R+ N G + K G + A R+ + + TD
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREK-----------APAAFCRKAQTS---TDRFEMWG 239
Query: 115 DGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTS---VLEMVAAFEKASG 171
DG R + + + +G + L K D E N+G+ + S + EMV +FE+
Sbjct: 240 DGLQTRSFTFIDECVEG-VLRLTKSDFR----EPVNIGSDEMVSMNEMAEMVLSFEE--- 291
Query: 172 KKIPL 176
KK+P+
Sbjct: 292 KKLPI 296
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 35/185 (18%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHRSD 56
+G K ++SSA +Y K + T + +P E + +G KL EE+C+ ++ D
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNK-D 193
Query: 57 SEWKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTK-- 114
+ + R+ N G + K G + A R+ + + TD
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREK-----------APAAFCRKAQTS---TDRFEMWG 239
Query: 115 DGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTS---VLEMVAAFEKASG 171
DG R + + + +G + L K D E N+G+ + S + EMV +FE+
Sbjct: 240 DGLQTRSFTFIDECVEG-VLRLTKSDFR----EPVNIGSDEMVSMNEMAEMVLSFEE--- 291
Query: 172 KKIPL 176
KK+P+
Sbjct: 292 KKLPI 296
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 50/227 (22%)
Query: 12 SSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKI--ILLRYFNP 69
+S++ ++G + +P TE+ P +PY KLF I + + + + IL + +P
Sbjct: 125 ASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESP 184
Query: 70 VGAHPSGKIGEDPRGIP---NNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVI 126
+ RGI + + ++ G + +L V G + +D +Y+ +
Sbjct: 185 L------------RGIEFVTRKITYSLARIKYGLQDKL-VLGNLNAKRDWGYAPEYVEAM 231
Query: 127 DLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG------ 180
L + + +P + Y + TG+ +V E V K +G I V G
Sbjct: 232 WL-------MMQQPEP----DDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGI 280
Query: 181 ---------------RRPGDAEIVYASTGKAERELNWKAKYGIDEMC 212
RP + +I+ + KA ++L WK + DE+
Sbjct: 281 DRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELV 327
>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
Length = 538
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 161 EMVAAFEKASGKKIPLVKSGRR-----------PGDAEIVYASTGKAERELNWKAKYGID 209
E + EK GK+ PL+ +G R P + + S KA ++L KA D
Sbjct: 25 EALGLVEKELGKEYPLIINGERVTTEDKIQSWNPARKDQLVGSVSKANQDLAEKAIQSAD 84
Query: 210 EMCRDQWNWASKNP 223
E + W + NP
Sbjct: 85 EAFQ---TWRNVNP 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,126,475
Number of Sequences: 62578
Number of extensions: 370768
Number of successful extensions: 915
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 68
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)