Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>026753
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK
AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL
LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL
GGAVIPPGKGLRSALGLKEGGNSNSLVPCLLCLLTFSVYEFIMSDAVFIKLGY

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026753
        (233 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2823639 - symbol:NPQ4 "NONPHOTOCHEMICAL QUENCH...   386  9.4e-40   2


>TAIR|locus:2823639 [details] [associations]
            symbol:NPQ4 "NONPHOTOCHEMICAL QUENCHING 4" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009517 "PSII associated light-harvesting complex II"
            evidence=TAS] [GO:0010196 "nonphotochemical quenching"
            evidence=IMP] [GO:0016168 "chlorophyll binding" evidence=TAS]
            [GO:0051738 "xanthophyll binding" evidence=TAS] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0080167
            "response to karrikin" evidence=IEP] [GO:0010027 "thylakoid
            membrane organization" evidence=IMP] [GO:0000023 "maltose metabolic
            process" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009657 "plastid organization" evidence=RCA] [GO:0010103
            "stomatal complex morphogenesis" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019344 "cysteine
            biosynthetic process" evidence=RCA] [GO:0043085 "positive
            regulation of catalytic activity" evidence=RCA] Pfam:PF00504
            GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0080167
            GO:GO:0010027 GO:GO:0015979 GO:GO:0009523 GO:GO:0016168
            Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
            SUPFAM:SSF103511 EMBL:AC084807 GO:GO:0009517 GO:GO:0010196
            UniGene:At.49230 EMBL:AF134131 EMBL:AB015859 IPI:IPI00531199
            PIR:T52313 RefSeq:NP_175092.1 UniGene:At.21534 UniGene:At.27004
            PDB:2AUI PDB:2AVL PDBsum:2AUI PDBsum:2AVL ProteinModelPortal:Q9XF91
            SMR:Q9XF91 STRING:Q9XF91 PaxDb:Q9XF91 PRIDE:Q9XF91 ProMEX:Q9XF91
            EnsemblPlants:AT1G44575.1 GeneID:841033 KEGG:ath:AT1G44575
            TAIR:At1g44575 eggNOG:NOG266722 HOGENOM:HOG000238511
            InParanoid:Q9XF91 KO:K03542 OMA:LGDRGRF PhylomeDB:Q9XF91
            ProtClustDB:CLSN2692112 BioCyc:MetaCyc:AT1G44575-MONOMER
            Genevestigator:Q9XF91 GO:GO:0051738 Uniprot:Q9XF91
        Length = 265

 Score = 386 (140.9 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 83/118 (70%), Positives = 86/118 (72%)

Query:    84 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143
             K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIY
Sbjct:    69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIY 128

Query:   144 EAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGG 201
             EAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK +RSALGLKE G
Sbjct:   129 EAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQG 184

 Score = 175 (66.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 40/75 (53%), Positives = 48/75 (64%)

Query:   102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAI 161
             K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP            AI
Sbjct:   191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAI 250

Query:   162 GALGDRGKFVDEPDE 176
                G+ GKF+ +  E
Sbjct:   251 NP-GN-GKFITDDGE 263

 Score = 54 (24.1 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 11/15 (73%), Positives = 12/15 (80%)

Query:     1 MAQTMLLMSGVSTSH 15
             MAQTMLL SGV+  H
Sbjct:     1 MAQTMLLTSGVTAGH 15


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.139   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       179   0.00089  109 3  11 22  0.44    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  118 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.02u 0.10s 13.12t   Elapsed:  00:00:01
  Total cpu time:  13.02u 0.10s 13.12t   Elapsed:  00:00:01
  Start:  Sat May 11 04:35:50 2013   End:  Sat May 11 04:35:51 2013

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