Query 026753
Match_columns 233
No_of_seqs 188 out of 646
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 12:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00504 Chloroa_b-bind: Chlor 99.6 1.4E-16 3.1E-21 130.4 5.2 121 88-217 15-149 (156)
2 PLN00084 photosystem II subuni 99.5 2.8E-14 6.2E-19 123.7 5.8 54 101-154 135-189 (214)
3 PLN00101 Photosystem I light-h 99.5 2.7E-14 5.8E-19 128.5 3.4 126 102-230 92-232 (250)
4 PHA02337 putative high light i 99.4 5.6E-13 1.2E-17 88.3 3.3 32 100-131 1-32 (35)
5 PLN00097 photosystem I light h 99.3 1.7E-12 3.7E-17 116.6 3.6 130 98-230 79-229 (244)
6 PLN00048 photosystem I light h 99.3 4.6E-12 1E-16 114.7 4.7 129 102-231 86-243 (262)
7 PLN00098 light-harvesting comp 99.2 8.9E-12 1.9E-16 113.2 5.7 129 101-230 100-247 (267)
8 PLN00099 light-harvesting comp 99.2 1.3E-11 2.8E-16 110.8 4.1 123 98-231 79-220 (243)
9 PLN00170 photosystem II light- 99.2 2.3E-11 5E-16 110.0 4.3 122 101-232 95-254 (255)
10 PLN00025 photosystem II light 99.2 3.2E-11 7E-16 109.3 5.0 123 99-231 89-239 (262)
11 PLN00147 light-harvesting comp 99.1 2.1E-10 4.5E-15 103.6 9.0 29 102-130 84-112 (252)
12 PLN00100 light-harvesting comp 99.1 2.7E-11 5.9E-16 109.0 3.1 120 98-231 70-193 (246)
13 PLN00187 photosystem II light- 99.1 9.2E-11 2E-15 107.6 5.1 118 98-228 130-265 (286)
14 PLN00014 light-harvesting-like 99.1 3.8E-11 8.2E-16 107.8 2.1 50 88-137 139-195 (250)
15 PLN00089 fucoxanthin-chlorophy 99.1 2.2E-10 4.8E-15 100.7 5.6 33 98-130 72-104 (209)
16 PLN00171 photosystem light-ha 98.9 8.5E-10 1.8E-14 102.8 5.3 30 102-131 149-178 (324)
17 PLN00120 fucoxanthin-chlorophy 98.9 1.2E-09 2.7E-14 95.6 3.8 27 98-124 61-87 (202)
18 PHA02337 putative high light i 98.4 1E-07 2.2E-12 63.4 1.9 27 200-226 1-30 (35)
19 PF00504 Chloroa_b-bind: Chlor 97.9 5.1E-06 1.1E-10 68.3 2.0 28 97-124 129-156 (156)
20 PLN00100 light-harvesting comp 97.9 9.2E-06 2E-10 73.6 3.0 40 102-141 161-200 (246)
21 PLN00147 light-harvesting comp 97.8 1.2E-05 2.6E-10 73.0 3.5 40 103-142 202-241 (252)
22 PLN00099 light-harvesting comp 97.7 2.3E-05 4.9E-10 70.9 3.4 41 103-143 188-229 (243)
23 PLN00101 Photosystem I light-h 97.7 1.5E-05 3.2E-10 72.4 1.7 40 102-141 201-240 (250)
24 PLN00089 fucoxanthin-chlorophy 97.7 2.2E-05 4.7E-10 69.4 2.6 28 104-131 180-207 (209)
25 PLN00025 photosystem II light 97.7 2.5E-05 5.4E-10 71.4 2.9 42 102-143 207-248 (262)
26 PLN00048 photosystem I light h 97.6 3.4E-05 7.3E-10 70.4 2.7 35 102-136 211-245 (262)
27 PLN00098 light-harvesting comp 97.5 5.4E-05 1.2E-09 69.4 3.1 35 102-136 216-250 (267)
28 PLN00097 photosystem I light h 97.5 5.4E-05 1.2E-09 68.6 3.0 36 102-137 198-233 (244)
29 PLN00120 fucoxanthin-chlorophy 97.5 7.7E-05 1.7E-09 65.6 3.6 26 103-128 170-195 (202)
30 PLN00187 photosystem II light- 97.5 7.2E-05 1.6E-09 69.2 3.3 40 102-141 236-275 (286)
31 PLN00084 photosystem II subuni 97.5 4.1E-05 8.8E-10 67.3 1.5 24 113-136 1-25 (214)
32 PLN00171 photosystem light-ha 97.5 8.7E-05 1.9E-09 69.7 3.3 39 103-141 275-313 (324)
33 PLN00014 light-harvesting-like 97.4 3.9E-05 8.4E-10 69.6 0.3 31 202-232 160-193 (250)
34 PLN00170 photosystem II light- 96.7 0.00077 1.7E-08 61.6 1.5 34 101-135 221-254 (255)
35 PLN02449 ferrochelatase 95.1 0.012 2.5E-07 58.2 1.9 31 95-133 455-485 (485)
36 COG3087 FtsN Cell division pro 35.8 26 0.00055 32.8 2.1 23 98-120 198-220 (264)
No 1
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.64 E-value=1.4e-16 Score=130.41 Aligned_cols=121 Identities=31% Similarity=0.414 Sum_probs=67.1
Q ss_pred cCCc-cCCCCccCCcchhhhhhhHHHHHHHHHHHHHHHhhChhh----HHhhhcc-cC-CCccchhhHHHHHHHHHHHHH
Q 026753 88 EDGI-FGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGI----LAQLNLE-TG-IPIYEAEPLLLFFILFTLLGA 160 (233)
Q Consensus 88 ed~~-f~~s~~~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~gi----L~Ql~~~-~G-~p~~~~~p~ll~~i~ftL~AA 160 (233)
.|++ |.+...+.|.+++|++|||+||+|+++.++.|++++.+. .++.+.. .+ ++ -+....++.+.++++
T Consensus 15 fDPlgl~~~~~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~ig~ 90 (156)
T PF00504_consen 15 FDPLGLSSDPDFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIP----VPAAGWAQILLFIGA 90 (156)
T ss_dssp SSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSS----SHSHHHHHHHHHHHH
T ss_pred CChhhcccchhHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhh----hhhHHHHHHHHHHhH
Confidence 6665 544446778899999999999999999999999998653 2222210 12 11 122222233334444
Q ss_pred hhccCCCCccccCCCCCCCCCCcccCCCC-CcccccCcC------CCCCccccchhhHHhhHHH
Q 026753 161 IGALGDRGKFVDEPDEPTGLGGAVIPPGK-GLRSALGLK------EGGNSNSLVPCLLCLLTFS 217 (233)
Q Consensus 161 I~pL~~~G~~v~~~~ep~g~~~~~ipP~k-g~~~~lGl~------~fg~~aEL~NGRlAMLGfa 217 (233)
+.... .....+.. ......+ ..|++ ++ +++|+. .+.+.+||+|||+||+|++
T Consensus 91 ~e~~~--~~~~~~~~-~~~~~~~-~~pG~~~~-dplgl~~~~~~~~~~~~~El~NGRlAMla~~ 149 (156)
T PF00504_consen 91 LEPWR--QQGVPEPG-EGGGKDG-RYPGDLGF-DPLGLAKDPEEKEFMQLAELKNGRLAMLAFA 149 (156)
T ss_dssp HHHHH--HHHTTTCC-TTSSSSS-SSSSSSSS-STSSTSSSCHSHHCHHHHHHHHHHHHHHHHH
T ss_pred hhhhh--cccccCCc-ccccccc-cCcccccc-chhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 43210 01111100 0000111 22332 34 456764 1235999999999999975
No 2
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=99.49 E-value=2.8e-14 Score=123.74 Aligned_cols=54 Identities=46% Similarity=0.826 Sum_probs=50.2
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhh-ChhhHHhhhcccCCCccchhhHHHHHHH
Q 026753 101 TKQNELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETGIPIYEAEPLLLFFIL 154 (233)
Q Consensus 101 t~~aEl~NGRlAMlGf~a~l~~E~~T-G~giL~Ql~~~~G~p~~~~~p~ll~~i~ 154 (233)
++.+|+||||+||+||+++++.|++| |+|+++|++.++|+|+++.++++++|+.
T Consensus 135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl~ 189 (214)
T PLN00084 135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLF 189 (214)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHHH
Confidence 57899999999999999999999999 9999999999999999999998766643
No 3
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.46 E-value=2.7e-14 Score=128.46 Aligned_cols=126 Identities=27% Similarity=0.292 Sum_probs=75.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHH---hhhcccCCCccchhhHHHHHHHHHHHHHhhccCCCCccccC--CCC
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILA---QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE--PDE 176 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~---Ql~~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~v~~--~~e 176 (233)
+.+|+.||||||+|+++.++.|++|+.|++. |+ +.|...|...+..++.|-+.+.+.++....++..-+. ..+
T Consensus 92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~--~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~ 169 (250)
T PLN00101 92 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWY--DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 169 (250)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccc--cccchhhcccchHHHHHHHHHHHHHHHHHhhcccCCCccccc
Confidence 5679999999999999999999999999873 33 2454444444333444434455555432111111000 000
Q ss_pred C--C--C-CCCcccCCCCCcccccCcCC--CCCccccchhhHHhhHHH---HHHHHhccceeEe
Q 026753 177 P--T--G-LGGAVIPPGKGLRSALGLKE--GGNSNSLVPCLLCLLTFS---VYEFIMSDAVFIK 230 (233)
Q Consensus 177 p--~--g-~~~~~ipP~kg~~~~lGl~~--fg~~aEL~NGRlAMLGfa---li~~i~g~a~~~~ 230 (233)
+ . . ......+|+..| |+||+++ .-+.+||.||||||+++. +=..++|.+++=|
T Consensus 170 ~~~~~~~~~~gd~~YPGG~F-DPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~n 232 (250)
T PLN00101 170 PIFKQYSLPPNEVGYPGGIF-NPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFEN 232 (250)
T ss_pred ccccccccCCccccCCCCcc-CccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChHHH
Confidence 1 0 1 123456777656 6799863 225899999999999964 3334667666543
No 4
>PHA02337 putative high light inducible protein
Probab=99.35 E-value=5.6e-13 Score=88.33 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=30.3
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHhhChhhH
Q 026753 100 FTKQNELFVGRVAMIGFAASLLGEGITGKGIL 131 (233)
Q Consensus 100 ft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL 131 (233)
||+++|+||||+||+||+++++.|+.||+++-
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 68999999999999999999999999999873
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.28 E-value=1.7e-12 Score=116.59 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=72.4
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhH---HhhhcccCCCc-cchhhHHHHHHHHHHHHHhhccCCCCcc---
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL---AQLNLETGIPI-YEAEPLLLFFILFTLLGAIGALGDRGKF--- 170 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL---~Ql~~~~G~p~-~~~~p~ll~~i~ftL~AAI~pL~~~G~~--- 170 (233)
+.|.+++|+.||||||+|++++++.|++++.|+. .|+. .|... |......++.|.+.+.+.+...-.++..
T Consensus 79 ~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~--Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg 156 (244)
T PLN00097 79 LKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWID--AAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPG 156 (244)
T ss_pred HHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCcccc--CCcchhccccchhHHHHHHHHHHHHHHHHhhcccCCC
Confidence 3344678999999999999999999999998774 2322 33222 2111112233333334444321111100
Q ss_pred --ccCC---CCCCCCCCcccCCCCCcccccCcCCC------CCccccchhhHHhhHHH--HHH-HHhccceeEe
Q 026753 171 --VDEP---DEPTGLGGAVIPPGKGLRSALGLKEG------GNSNSLVPCLLCLLTFS--VYE-FIMSDAVFIK 230 (233)
Q Consensus 171 --v~~~---~ep~g~~~~~ipP~kg~~~~lGl~~f------g~~aEL~NGRlAMLGfa--li~-~i~g~a~~~~ 230 (233)
-.+. .+.........+|++.| ++||+... -+.+|+.|||+||+++. ++. .++|.+++=|
T Consensus 157 ~~~~~p~~~~~~~~~~~d~gYPgg~F-DPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~n 229 (244)
T PLN00097 157 SMNEDPLFGANKGDTNTDVGYPKGLF-DKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDN 229 (244)
T ss_pred ccccccccccccCCcccccCCCCCCC-CccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHH
Confidence 0000 00011123455777656 57998631 13799999999999964 333 3666666543
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.25 E-value=4.6e-12 Score=114.69 Aligned_cols=129 Identities=22% Similarity=0.355 Sum_probs=72.2
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh----cccCC------CccchhhHHHHHHHHHHHHHhhccCCCCccc
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLN----LETGI------PIYEAEPLLLFFILFTLLGAIGALGDRGKFV 171 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~----~~~G~------p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~v 171 (233)
+++|+.||||||+|++++++.|+++++|++.+.. ...|. ..|+..+..++.+-+.+.+.++..-.++-..
T Consensus 86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~ 165 (262)
T PLN00048 86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYK 165 (262)
T ss_pred HHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccC
Confidence 5679999999999999999999999998875321 11221 1233444444444444555554311111000
Q ss_pred cCC--CCC-CC----C--CCcccCCCC-CcccccCcCCCC------CccccchhhHHhhHHH--HHH-HHhccceeEec
Q 026753 172 DEP--DEP-TG----L--GGAVIPPGK-GLRSALGLKEGG------NSNSLVPCLLCLLTFS--VYE-FIMSDAVFIKL 231 (233)
Q Consensus 172 ~~~--~ep-~g----~--~~~~ipP~k-g~~~~lGl~~fg------~~aEL~NGRlAMLGfa--li~-~i~g~a~~~~~ 231 (233)
+.. .+. .+ + .+...+|+. +| +++|+.... +.+||-|||+||+++. ++. .+.|.+++-+|
T Consensus 166 pG~~~~~~~~~~~~~~~~~~d~~yPG~~~f-DPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L 243 (262)
T PLN00048 166 PGSMGKQYFLGLEKGLGGSGNPAYPGGPFF-NPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNL 243 (262)
T ss_pred CCcccccccccchhcccccccccccccccc-CccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHH
Confidence 000 000 00 0 012234554 56 578886311 3799999999999954 333 46666655443
No 7
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.24 E-value=8.9e-12 Score=113.18 Aligned_cols=129 Identities=22% Similarity=0.301 Sum_probs=71.3
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh-cccCCCccchhhHHHHHHHHHHHHHhhccCCCCcc----ccCCC
Q 026753 101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF----VDEPD 175 (233)
Q Consensus 101 t~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~-~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~----v~~~~ 175 (233)
-+++|+.||||||+|+++.++.|++++.|++.... .+.|...|...+..++.+-+.+.+.+.-.-.++.. +..+.
T Consensus 100 ~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~ 179 (267)
T PLN00098 100 FAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEP 179 (267)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccc
Confidence 36789999999999999999999999988865321 22343333333322333333345555421111100 00000
Q ss_pred -CC--CCCCCcccCCCC-CcccccCcCCCC-------CccccchhhHHhhHHH--HHH-HHhccceeEe
Q 026753 176 -EP--TGLGGAVIPPGK-GLRSALGLKEGG-------NSNSLVPCLLCLLTFS--VYE-FIMSDAVFIK 230 (233)
Q Consensus 176 -ep--~g~~~~~ipP~k-g~~~~lGl~~fg-------~~aEL~NGRlAMLGfa--li~-~i~g~a~~~~ 230 (233)
.+ .....+..+|+. +| +++|+.... +.+||-|||+||+++. +.. .+.|.+++=|
T Consensus 180 ~~~~~~~~~~d~~yPGg~~F-DPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~n 247 (267)
T PLN00098 180 KLPNKTNPKPDVGYPGGLWF-DPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIEN 247 (267)
T ss_pred cccccccCCCCCCCCCCccC-CcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHH
Confidence 00 000112234553 46 468885333 3699999999999954 333 4666665543
No 8
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.19 E-value=1.3e-11 Score=110.78 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=64.3
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHh--h-hc------ccCCCccchhhHHHHHHHHHHHHHhhccCCCC
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ--L-NL------ETGIPIYEAEPLLLFFILFTLLGAIGALGDRG 168 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Q--l-~~------~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G 168 (233)
+.|-+++|+.|||+||+|+++.++.|+++.....+- + .. ..|.++.+.....+..+-+.+++.+... +
T Consensus 79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~--r- 155 (243)
T PLN00099 79 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQ--R- 155 (243)
T ss_pred HHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHH--h-
Confidence 444467899999999999999999999753111110 0 00 0122221111011111223344444321 1
Q ss_pred ccccCCCCCCCCCCcccCCCCCcccccCcCCCC------CccccchhhHHhhHHH--HHHH--HhccceeEec
Q 026753 169 KFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGG------NSNSLVPCLLCLLTFS--VYEF--IMSDAVFIKL 231 (233)
Q Consensus 169 ~~v~~~~ep~g~~~~~ipP~kg~~~~lGl~~fg------~~aEL~NGRlAMLGfa--li~~--i~g~a~~~~~ 231 (233)
... + ++. +-.+|+.+|+ ++|+.... +.+||-||||||+++. ++.+ +.|.+++=+|
T Consensus 156 -~~~-~-~~~----~~~yPGd~FD-PlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL 220 (243)
T PLN00099 156 -SME-K-DPE----KKKYPGGAFD-PLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 220 (243)
T ss_pred -hcc-C-CCC----CCcCCCCcCC-cccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHH
Confidence 111 1 111 1124555674 68875311 3789999999999965 4444 4577665443
No 9
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.16 E-value=2.3e-11 Score=109.99 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=70.1
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCccchhh---HHHHHHHHHHHHHhhccCCCCccccCCCCC
Q 026753 101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP---LLLFFILFTLLGAIGALGDRGKFVDEPDEP 177 (233)
Q Consensus 101 t~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~~~~~p---~ll~~i~ftL~AAI~pL~~~G~~v~~~~ep 177 (233)
.+.+|+.||||||+|++++++.|++||...++. |.......+ ..++.+-+.+.+.++. +...+..+|
T Consensus 95 ~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~a-----G~~~~~~~p~~~~~l~~~q~~lmg~~E~-----~R~~~~~~P 164 (255)
T PLN00170 95 YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA-----GADPGAIAPFSFGSLLGTQLLLMGWVES-----KRWVDFFNP 164 (255)
T ss_pred HHHHHhhccHHHHHHHHhhhhHHHccCCChhhC-----CccccccCccchHHHHHHHHHHhhhhhh-----eeeccccCC
Confidence 356899999999999999999999998764332 322111111 1222233334444432 222221111
Q ss_pred C------------------CCCCcccCCCCCcccccCcCCC--------C-------CccccchhhHHhhHHH--HHHHH
Q 026753 178 T------------------GLGGAVIPPGKGLRSALGLKEG--------G-------NSNSLVPCLLCLLTFS--VYEFI 222 (233)
Q Consensus 178 ~------------------g~~~~~ipP~kg~~~~lGl~~f--------g-------~~aEL~NGRlAMLGfa--li~~i 222 (233)
. ...+...+|+..+=|+||+... + +.+||.|||+||+++. .+..-
T Consensus 165 ~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa~ 244 (255)
T PLN00170 165 DSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEAG 244 (255)
T ss_pred cccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheeec
Confidence 0 0112334566442367998741 1 4899999999999965 45556
Q ss_pred hccceeEecC
Q 026753 223 MSDAVFIKLG 232 (233)
Q Consensus 223 ~g~a~~~~~~ 232 (233)
.|.++.=+||
T Consensus 245 ~g~~p~~~l~ 254 (255)
T PLN00170 245 QGKTPLGALG 254 (255)
T ss_pred cCCCchhhhc
Confidence 6666544444
No 10
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.15 E-value=3.2e-11 Score=109.34 Aligned_cols=123 Identities=20% Similarity=0.341 Sum_probs=68.3
Q ss_pred CCcchhhhhhhHHHHHHHHHHHHHHHhhChhhH-H---hhhcccCCC-------ccchhh--------HHHHHHHHHHHH
Q 026753 99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGIL-A---QLNLETGIP-------IYEAEP--------LLLFFILFTLLG 159 (233)
Q Consensus 99 Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL-~---Ql~~~~G~p-------~~~~~p--------~ll~~i~ftL~A 159 (233)
.+.+++|+.||||||+|++++++.|++++.|+. . |+. .|.. .|...+ ..++.+-+.+.+
T Consensus 89 ~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~--ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg 166 (262)
T PLN00025 89 ARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFK--AGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 166 (262)
T ss_pred HHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccc--cccccccccccccccCcccchhhhHHHHHHHHHHHHH
Confidence 344678999999999999999999999987662 1 221 1111 111111 111222223355
Q ss_pred HhhccCCCCccccCCCCCCCCCCcccCCCCCcccccCcCCCC------CccccchhhHHhhHHH--HHH-HHhccceeEe
Q 026753 160 AIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGG------NSNSLVPCLLCLLTFS--VYE-FIMSDAVFIK 230 (233)
Q Consensus 160 AI~pL~~~G~~v~~~~ep~g~~~~~ipP~kg~~~~lGl~~fg------~~aEL~NGRlAMLGfa--li~-~i~g~a~~~~ 230 (233)
++......+ . +-+...+-.+|+.-| ++||+.... +.+||-|||+||+++. ++. .+.|.+++-|
T Consensus 167 ~~E~~r~~~-----~--~~~~~~d~~yPG~~F-DPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlen 238 (262)
T PLN00025 167 AVEGYRVNG-----G--PLGEGLDPLYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 238 (262)
T ss_pred HHHHhcccC-----C--cccccccCcCCcccC-CccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHH
Confidence 554321111 0 101011223566545 578886311 3889999999999964 444 4666766544
Q ss_pred c
Q 026753 231 L 231 (233)
Q Consensus 231 ~ 231 (233)
|
T Consensus 239 L 239 (262)
T PLN00025 239 L 239 (262)
T ss_pred H
Confidence 3
No 11
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.13 E-value=2.1e-10 Score=103.57 Aligned_cols=29 Identities=38% Similarity=0.444 Sum_probs=26.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhh
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGI 130 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~gi 130 (233)
+++|+.|||+||+|+++.++.|+++..|+
T Consensus 84 r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 84 VQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred HHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 56799999999999999999999988775
No 12
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.12 E-value=2.7e-11 Score=109.03 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=63.6
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCccchhhHHHHHHHHHHHHHhhccCCCCccccCCCCC
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~v~~~~ep 177 (233)
+.|.+++|+.|||+||+|+++.++.|+++--+ ++. .|...+......+..+-+.+++.++... ..+.+++
T Consensus 70 ~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P~---w~~--ag~~~~~~~~~~l~~iqill~g~~E~~r-----~~~~~~~ 139 (246)
T PLN00100 70 LPYLQEAELMNGRWAMAATAGILFTDAVGLPK---FWE--AGAEKYGLDLQTLVLIQVVVMAVLEAAR-----YRGFMKT 139 (246)
T ss_pred HHHHHHHHhhcchHHHHHHhhhhHHHHhcccc---hhh--cchhhhccchhHHHHHHHHHHHHHhhhc-----ccccccc
Confidence 34456789999999999999999999864222 221 2222221111111122222345453311 1111111
Q ss_pred CCCCCcccCCCCCcccccCcCC-CCCccccchhhHHhhHHH--HHHH-HhccceeEec
Q 026753 178 TGLGGAVIPPGKGLRSALGLKE-GGNSNSLVPCLLCLLTFS--VYEF-IMSDAVFIKL 231 (233)
Q Consensus 178 ~g~~~~~ipP~kg~~~~lGl~~-fg~~aEL~NGRlAMLGfa--li~~-i~g~a~~~~~ 231 (233)
+. .+ .|+.-+| |++|+.. .-+.+||-||||||+++. +..+ +.|.+++-+|
T Consensus 140 -g~-~~-~pg~~~F-DPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL 193 (246)
T PLN00100 140 -GE-SG-VLSFFPF-DPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGL 193 (246)
T ss_pred -cc-cC-CCCCCCC-CcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHH
Confidence 10 01 2233346 3677742 225899999999999964 4443 6666655443
No 13
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.09 E-value=9.2e-11 Score=107.58 Aligned_cols=118 Identities=23% Similarity=0.272 Sum_probs=64.3
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhc---ccCCCccchhh-----HHHHHHHHHHHHHhhccCCCCc
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL---ETGIPIYEAEP-----LLLFFILFTLLGAIGALGDRGK 169 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~---~~G~p~~~~~p-----~ll~~i~ftL~AAI~pL~~~G~ 169 (233)
+-|.+++|++||||||+|++++++.|+++|..... -+. ..|. .|...+ ..++.+-+.+.+.+.. .+..
T Consensus 130 l~r~REaELiHGRwAMLAvaG~lvpEll~G~~W~~-aG~~~~~~g~-~y~g~~~p~~~~~l~~iqvllmG~~E~--~R~~ 205 (286)
T PLN00187 130 LQRFRECELIHGRWAMLATLGALSVEALTGVTWQD-AGKVELVDGS-SYLGQPLPFSITTLIWIEVLVIGYIEF--QRNA 205 (286)
T ss_pred HHHHHHHHhhhhHHHHHHhhchhhHHhccCCcccc-cccccccccc-cccccccchhHHHHHHHHHHHHHHHHh--hhcc
Confidence 44668999999999999999999999997652211 010 0111 122111 1122222334444432 1111
Q ss_pred cccCCCCCCCCCCcccCCCC-CcccccCcCCCC------CccccchhhHHhhHHH---HHHHHhcccee
Q 026753 170 FVDEPDEPTGLGGAVIPPGK-GLRSALGLKEGG------NSNSLVPCLLCLLTFS---VYEFIMSDAVF 228 (233)
Q Consensus 170 ~v~~~~ep~g~~~~~ipP~k-g~~~~lGl~~fg------~~aEL~NGRlAMLGfa---li~~i~g~a~~ 228 (233)
+ .+. ... .+|+. +| +++|+.... +.+||.|||+||+++. +-+.+.|.+++
T Consensus 206 ---~---~~~-~~~-~yPGg~~F-DPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 206 ---E---LDP-EKR-LYPGGKFF-DPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred ---C---CCC-CCC-CCCccccc-cccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 1 111 111 23443 46 568885311 3789999999999954 33446665543
No 14
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=99.08 E-value=3.8e-11 Score=107.77 Aligned_cols=50 Identities=34% Similarity=0.520 Sum_probs=41.3
Q ss_pred cCCccCCCCc--cCCc-----chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcc
Q 026753 88 EDGIFGTSGG--FGFT-----KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 137 (233)
Q Consensus 88 ed~~f~~s~~--~Gft-----~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~ 137 (233)
|+.+|++|.. |.|- +++|++|||+|||||++++++|++||+|+++|++.-
T Consensus 139 epv~FdtSiiPWWaW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 139 EPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CCceeecccccHHHHHHhccCchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 3344999844 3332 469999999999999999999999999999999863
No 15
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.05 E-value=2.2e-10 Score=100.72 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=27.7
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhh
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGI 130 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~gi 130 (233)
+-|-+++|+.|||+||+++++.++.|.++.-|.
T Consensus 72 ~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 72 LPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 345578999999999999999999999875553
No 16
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=98.94 E-value=8.5e-10 Score=102.75 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=26.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhH
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGIL 131 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL 131 (233)
+++|+.|||+||+|+++.++.|++++.|..
T Consensus 149 reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 149 FNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred HHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 457999999999999999999999877654
No 17
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=98.88 E-value=1.2e-09 Score=95.55 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.3
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHH
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEG 124 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~ 124 (233)
+-+.+.+|+.|||+||+++++.++.|.
T Consensus 61 ~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 61 FDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHHHHHhhcccHHHHhhccceeecc
Confidence 455688999999999999999999996
No 18
>PHA02337 putative high light inducible protein
Probab=98.43 E-value=1e-07 Score=63.44 Aligned_cols=27 Identities=7% Similarity=-0.026 Sum_probs=20.8
Q ss_pred CCCccccchhhHHhhHHH---HHHHHhccc
Q 026753 200 GGNSNSLVPCLLCLLTFS---VYEFIMSDA 226 (233)
Q Consensus 200 fg~~aEL~NGRlAMLGfa---li~~i~g~a 226 (233)
|++.+|.||||+||+||. ++|.++|+.
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 356899999999999974 455566654
No 19
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.91 E-value=5.1e-06 Score=68.25 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=24.6
Q ss_pred ccCCcchhhhhhhHHHHHHHHHHHHHHH
Q 026753 97 GFGFTKQNELFVGRVAMIGFAASLLGEG 124 (233)
Q Consensus 97 ~~Gft~~aEl~NGRlAMlGf~a~l~~E~ 124 (233)
.+.+++.+|++|||+||+|+++.+++|.
T Consensus 129 ~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 129 EKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3667899999999999999999999883
No 20
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=97.86 E-value=9.2e-06 Score=73.65 Aligned_cols=40 Identities=33% Similarity=0.433 Sum_probs=34.6
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p 141 (233)
+..|+.|||+||++|++.++++.+||+|+++++..-...|
T Consensus 161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP 200 (246)
T PLN00100 161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANP 200 (246)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCC
Confidence 5689999999999999999999999999999986433333
No 21
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=97.85 E-value=1.2e-05 Score=73.05 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=34.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCc
Q 026753 103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI 142 (233)
Q Consensus 103 ~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~ 142 (233)
..|+.|||+||+++++.+++|++||+|+++++..-.--|+
T Consensus 202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~ 241 (252)
T PLN00147 202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPW 241 (252)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcc
Confidence 4699999999999999999999999999999865444443
No 22
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=97.73 E-value=2.3e-05 Score=70.88 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=34.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHH-HhhChhhHHhhhcccCCCcc
Q 026753 103 QNELFVGRVAMIGFAASLLGE-GITGKGILAQLNLETGIPIY 143 (233)
Q Consensus 103 ~aEl~NGRlAMlGf~a~l~~E-~~TG~giL~Ql~~~~G~p~~ 143 (233)
..|+.|||+||+++++.+++| .+||+|+++++..-..-|+.
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~ 229 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 229 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCcc
Confidence 479999999999999999999 57899999998754444443
No 23
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=97.70 E-value=1.5e-05 Score=72.35 Aligned_cols=40 Identities=35% Similarity=0.531 Sum_probs=34.6
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p 141 (233)
+..|+.|||+||+++++.++++++||+|++++|..-..-|
T Consensus 201 k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP 240 (250)
T PLN00101 201 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 240 (250)
T ss_pred HHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCC
Confidence 4589999999999999999999999999999986443344
No 24
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=97.70 E-value=2.2e-05 Score=69.45 Aligned_cols=28 Identities=39% Similarity=0.599 Sum_probs=26.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhChhhH
Q 026753 104 NELFVGRVAMIGFAASLLGEGITGKGIL 131 (233)
Q Consensus 104 aEl~NGRlAMlGf~a~l~~E~~TG~giL 131 (233)
.|+.|||+||+|+++.++.|.+||+|++
T Consensus 180 ~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 180 KELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999999975
No 25
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=97.68 E-value=2.5e-05 Score=71.36 Aligned_cols=42 Identities=31% Similarity=0.382 Sum_probs=36.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCcc
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~~ 143 (233)
+..|+.|||+||+++++.+++|++||+|+++++..-..-|+.
T Consensus 207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~ 248 (262)
T PLN00025 207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVA 248 (262)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccc
Confidence 467999999999999999999999999999998755555544
No 26
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=97.61 E-value=3.4e-05 Score=70.43 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=32.1
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhc
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~ 136 (233)
+..|+.|||+||+++++.+++|++||+|++++|..
T Consensus 211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~ 245 (262)
T PLN00048 211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLD 245 (262)
T ss_pred HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHH
Confidence 45799999999999999999999999999998853
No 27
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=97.55 E-value=5.4e-05 Score=69.37 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=32.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhc
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~ 136 (233)
+..|+.|||+||+++++.++++.+||+|+++++..
T Consensus 216 k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~ 250 (267)
T PLN00098 216 RTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMA 250 (267)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHH
Confidence 45899999999999999999999999999999864
No 28
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=97.54 E-value=5.4e-05 Score=68.61 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=32.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcc
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 137 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~ 137 (233)
+.+|+.|||+||+++++.++++.+||+|+++++..-
T Consensus 198 k~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~H 233 (244)
T PLN00097 198 KLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSH 233 (244)
T ss_pred HHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHH
Confidence 458999999999999999999999999999998643
No 29
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=97.53 E-value=7.7e-05 Score=65.64 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=24.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhCh
Q 026753 103 QNELFVGRVAMIGFAASLLGEGITGK 128 (233)
Q Consensus 103 ~aEl~NGRlAMlGf~a~l~~E~~TG~ 128 (233)
..|+.|||+||||+++.++.|.++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46999999999999999999999885
No 30
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=97.50 E-value=7.2e-05 Score=69.16 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=34.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p 141 (233)
+..|+.|||+||+++++.+++|.+||+|.+++|..-..-|
T Consensus 236 k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp 275 (286)
T PLN00187 236 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 275 (286)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCc
Confidence 3579999999999999999999999999999886543334
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.49 E-value=4.1e-05 Score=67.26 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhh-ChhhHHhhhc
Q 026753 113 MIGFAASLLGEGIT-GKGILAQLNL 136 (233)
Q Consensus 113 MlGf~a~l~~E~~T-G~giL~Ql~~ 136 (233)
|+||...-+.+++| |.|.++|+..
T Consensus 1 mlgf~~ttvgdvvtrg~gp~eql~d 25 (214)
T PLN00084 1 MLGFFFTTVGDVVTRGAGPLEQLRD 25 (214)
T ss_pred CcchhhcchhhhhccCCCcHHHhhh
Confidence 78888888888876 7788888764
No 32
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=97.46 E-value=8.7e-05 Score=69.71 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=33.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753 103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141 (233)
Q Consensus 103 ~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p 141 (233)
..|+.|||+||+++++.+++|.+||+|+++++..-.--|
T Consensus 275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP 313 (324)
T PLN00171 275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDP 313 (324)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCc
Confidence 469999999999999999999999999999986444344
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.41 E-value=3.9e-05 Score=69.57 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=25.4
Q ss_pred CccccchhhHHhhHHH---HHHHHhccceeEecC
Q 026753 202 NSNSLVPCLLCLLTFS---VYEFIMSDAVFIKLG 232 (233)
Q Consensus 202 ~~aEL~NGRlAMLGfa---li~~i~g~a~~~~~~ 232 (233)
+.+|++|||+||+||+ ++|.++|.+++=++|
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg 193 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMG 193 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHh
Confidence 6899999999999975 677788888765544
No 34
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=96.66 E-value=0.00077 Score=61.59 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=30.5
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh
Q 026753 101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 135 (233)
Q Consensus 101 t~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~ 135 (233)
-+..|+-|||+||+++++.+++- .||+|.|++++
T Consensus 221 lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 221 LKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred HHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 36789999999999999999877 79999999886
No 35
>PLN02449 ferrochelatase
Probab=95.07 E-value=0.012 Score=58.18 Aligned_cols=31 Identities=35% Similarity=0.378 Sum_probs=27.9
Q ss_pred CCccCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHh
Q 026753 95 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ 133 (233)
Q Consensus 95 s~~~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Q 133 (233)
.|.|||++ +||+||++.++.|++||+|.+++
T Consensus 455 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 455 VWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred hhhhcccc--------hHHHHHHHHHHHHHHcCCCcCCC
Confidence 47899998 99999999999999999998753
No 36
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=35.82 E-value=26 Score=32.81 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=17.9
Q ss_pred cCCcchhhhhhhHHHHHHHHHHH
Q 026753 98 FGFTKQNELFVGRVAMIGFAASL 120 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l 120 (233)
|.=...+|..-+|+||+||=+=+
T Consensus 198 Fk~~~qAE~~rA~LAmlG~sskI 220 (264)
T COG3087 198 FKTAEQAESVRAQLAMLGISSKI 220 (264)
T ss_pred cccHHHHHHHHHHHHhcccccee
Confidence 33336899999999999986644
Done!