Query 026753
Match_columns 233
No_of_seqs 188 out of 646
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 21:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_2 LHCA2, type II chloroph 99.4 1.9E-13 6.5E-18 122.6 5.7 136 96-232 97-251 (269)
2 2wsc_3 LHCA3, type II chloroph 99.3 1.7E-14 5.8E-19 129.9 -5.1 132 99-231 97-257 (276)
3 2wsc_4 Chlorophyll A-B binding 99.3 1.1E-13 3.7E-18 123.0 -2.4 132 97-231 87-232 (251)
4 3pl9_A Chlorophyll A-B binding 99.2 5.5E-12 1.9E-16 112.0 5.9 119 98-228 89-223 (243)
5 2bhw_A Chlorophyll A-B binding 99.2 4.1E-12 1.4E-16 111.5 3.0 32 98-129 58-89 (232)
6 2wsc_1 AT3G54890, LHCA1; photo 99.2 3E-12 1E-16 113.3 0.6 124 98-232 80-222 (241)
7 2bhw_A Chlorophyll A-B binding 98.2 5.1E-07 1.8E-11 79.2 3.0 42 101-142 176-217 (232)
8 3pl9_A Chlorophyll A-B binding 98.1 1.3E-06 4.3E-11 77.7 3.8 37 100-136 192-228 (243)
9 2wsc_2 LHCA2, type II chloroph 98.0 7.5E-07 2.6E-11 80.0 -1.0 38 98-135 214-251 (269)
10 2wsc_3 LHCA3, type II chloroph 97.9 1.3E-06 4.3E-11 78.8 -0.5 44 98-141 221-264 (276)
11 2wsc_1 AT3G54890, LHCA1; photo 97.8 3.5E-06 1.2E-10 74.6 0.2 45 100-144 186-231 (241)
12 2wsc_4 Chlorophyll A-B binding 97.5 1.8E-05 6.1E-10 70.3 0.2 41 102-143 201-241 (251)
No 1
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.40 E-value=1.9e-13 Score=122.65 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=74.9
Q ss_pred CccCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh-cccCCCccchhhHHHHHHHHHHHHHhhccCCC-----Cc
Q 026753 96 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDR-----GK 169 (233)
Q Consensus 96 ~~~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~-~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~-----G~ 169 (233)
..+.|.+++|+.|||+||+|+++.++.|++++.|++..-. .+.|...+...+..++.+-+.+++.+...-.+ |.
T Consensus 97 e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~ 176 (269)
T 2wsc_2 97 ESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGC 176 (269)
T ss_dssp SCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTTHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence 3467788999999999999999999999999888762100 11233333222211112212234444321000 11
Q ss_pred cccCC-CC-CCCCCCcccCCCC-CcccccCcCCCC-------CccccchhhHHhhHHH---HHHHHhccceeEecC
Q 026753 170 FVDEP-DE-PTGLGGAVIPPGK-GLRSALGLKEGG-------NSNSLVPCLLCLLTFS---VYEFIMSDAVFIKLG 232 (233)
Q Consensus 170 ~v~~~-~e-p~g~~~~~ipP~k-g~~~~lGl~~fg-------~~aEL~NGRlAMLGfa---li~~i~g~a~~~~~~ 232 (233)
.-.+. .+ ..........|++ +| +++|+.... +.+|++|||+||+||. +.+.+.|.++.-+|.
T Consensus 177 ~g~~p~f~~~~~~~~d~~~PG~~~f-DPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 177 VNTDPIFPNNKLTGTDVGYPGGLWF-DPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp CSSSCCSSSCCSSTTSCSCTTCSSC-CCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred cccccccccccccccccCCCCCccc-CccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 00000 00 0000111223443 35 568875221 4899999999999954 666688877766654
No 2
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.33 E-value=1.7e-14 Score=129.86 Aligned_cols=132 Identities=20% Similarity=0.281 Sum_probs=70.2
Q ss_pred CCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHh------hhcc----cCCCccchhhHHHHHHHHHHHHHhhccCCC-
Q 026753 99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ------LNLE----TGIPIYEAEPLLLFFILFTLLGAIGALGDR- 167 (233)
Q Consensus 99 Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Q------l~~~----~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~- 167 (233)
.|.+++|++|||+||+|+++.++.|++++.|++.+ .... .|...++..+..++.+.+.+++.+...-.+
T Consensus 97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~ 176 (276)
T 2wsc_3 97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQD 176 (276)
T ss_dssp THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTG
T ss_pred HHHHHHHhhcccchhhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcc
Confidence 78899999999999999999999999999987621 1100 122222222211222222334444321101
Q ss_pred ----CccccCC----CCCCCCCCcccCCCC-CcccccCcCCC------CCccccchhhHHhhHHH--HHH-HHhccceeE
Q 026753 168 ----GKFVDEP----DEPTGLGGAVIPPGK-GLRSALGLKEG------GNSNSLVPCLLCLLTFS--VYE-FIMSDAVFI 229 (233)
Q Consensus 168 ----G~~v~~~----~ep~g~~~~~ipP~k-g~~~~lGl~~f------g~~aEL~NGRlAMLGfa--li~-~i~g~a~~~ 229 (233)
|..-.+. ++.........+|++ +| +++|+... -+.+|++|||+||+|+. ++. .+.|.++.-
T Consensus 177 ~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~f-DPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~ 255 (276)
T 2wsc_3 177 WAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFF-NPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ 255 (276)
T ss_dssp GGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSC-CCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred cccCCcccccccccccccccccccccCCCcccc-cchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence 1000000 000000111234554 35 56887531 24899999999999964 333 466666655
Q ss_pred ec
Q 026753 230 KL 231 (233)
Q Consensus 230 ~~ 231 (233)
+|
T Consensus 256 ~l 257 (276)
T 2wsc_3 256 NL 257 (276)
T ss_dssp C-
T ss_pred HH
Confidence 44
No 3
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.29 E-value=1.1e-13 Score=122.99 Aligned_cols=132 Identities=24% Similarity=0.279 Sum_probs=72.2
Q ss_pred ccCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhh-hcccCCCccchhh-HHHHHHHHHHHHHhhcc-----CCCCc
Q 026753 97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL-NLETGIPIYEAEP-LLLFFILFTLLGAIGAL-----GDRGK 169 (233)
Q Consensus 97 ~~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql-~~~~G~p~~~~~p-~ll~~i~ftL~AAI~pL-----~~~G~ 169 (233)
.+.|.+++|++|||+||+|+++.++.|++++.|++..- -...|...+...+ .+..+.+ .+++.+... -..|.
T Consensus 87 ~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi-~liG~~E~~r~~~~~~pG~ 165 (251)
T 2wsc_4 87 NLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEF-ILSHYVEIRRWQDIKNPGS 165 (251)
T ss_dssp CTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHH-HHHHTTTHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHH-HHHHHHHHHHhhcccCCCc
Confidence 47788999999999999999999999999999887411 0112333222221 1111111 123333210 00011
Q ss_pred cccCC-CCCCC-CCCcccCCCCCcccccCcCCCC--CccccchhhHHhhHHH--HH-HHHhccceeEec
Q 026753 170 FVDEP-DEPTG-LGGAVIPPGKGLRSALGLKEGG--NSNSLVPCLLCLLTFS--VY-EFIMSDAVFIKL 231 (233)
Q Consensus 170 ~v~~~-~ep~g-~~~~~ipP~kg~~~~lGl~~fg--~~aEL~NGRlAMLGfa--li-~~i~g~a~~~~~ 231 (233)
.-.+. .+... ......+|+.-| ++||+.++. +.+||.|||| |+|+. ++ +.+.|.+++-||
T Consensus 166 ~g~~p~f~~~~~~~~d~~yPGg~F-DPLgl~~~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL 232 (251)
T 2wsc_4 166 VNQDPIFKQYSLPAGEVGYPGGIF-NPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNL 232 (251)
T ss_dssp TTCCSSSCSSSSCCHHHHSSCCTT-CCCCCCSSSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCT
T ss_pred ccccccccccccccccccCCCCcc-CccchhHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHH
Confidence 10000 00000 001123455444 568875433 5899999999 99954 44 447777777665
No 4
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.24 E-value=5.5e-12 Score=112.01 Aligned_cols=119 Identities=23% Similarity=0.265 Sum_probs=66.0
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHH---h-hh---cccCCCccchhhHHHHHHHHHHHHHhhccCCCCcc
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA---Q-LN---LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF 170 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~---Q-l~---~~~G~p~~~~~p~ll~~i~ftL~AAI~pL~~~G~~ 170 (233)
+.|.+++|++|||+||+|+++.++.|+.+|..... + +. ...|.|.-..-+.++ .+-+.+.+.+.. ..
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~-~~qv~lmG~~E~-----~R 162 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLI-WIEVLVIGYIEF-----QR 162 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHH-HHHHHHHHHHHH-----HH
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHH-HHHHHHHHHHHH-----Hh
Confidence 45678999999999999999999999997632110 0 00 011222211111122 222234444432 11
Q ss_pred ccCCCCCCCCCCcccCCCCCcccccCcCCCC------CccccchhhHHhhHHH---HHHHHhcccee
Q 026753 171 VDEPDEPTGLGGAVIPPGKGLRSALGLKEGG------NSNSLVPCLLCLLTFS---VYEFIMSDAVF 228 (233)
Q Consensus 171 v~~~~ep~g~~~~~ipP~kg~~~~lGl~~fg------~~aEL~NGRlAMLGfa---li~~i~g~a~~ 228 (233)
..+. ++. ....|+.-| ++||+.... +.+|+.|||+||+|+. +.+.+.|.+..
T Consensus 163 ~~~~-~~~----~~~~PG~~F-DPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 163 NAEL-DTE----KRLYPGGTF-DPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp HSCC-CTT----TTTCCCGGG-CTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred hccc-CCc----cccCCCcch-hhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 1111 011 113455444 578886311 2799999999999964 44456776654
No 5
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.20 E-value=4.1e-12 Score=111.50 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=27.7
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChh
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKG 129 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~g 129 (233)
+.|.+++|+.|||+||+|+++.++.|+++..|
T Consensus 58 ~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 58 FSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 44567899999999999999999999987544
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.17 E-value=3e-12 Score=113.27 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=66.1
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHh--h-hcccCC------CccchhhHHHHHHHHHHHHHhhccCCCC
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ--L-NLETGI------PIYEAEPLLLFFILFTLLGAIGALGDRG 168 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Q--l-~~~~G~------p~~~~~p~ll~~i~ftL~AAI~pL~~~G 168 (233)
+.+.+++|+.|||+||+++++.++.|+++..++.+. + ....|. |+.+.....++.+-+.+++.+...
T Consensus 80 ~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~---- 155 (241)
T 2wsc_1 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQ---- 155 (241)
T ss_dssp HHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHH----
T ss_pred HHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHH----
Confidence 455678999999999999999999998654222210 1 111122 221111112222223333444321
Q ss_pred ccccCCCCCCCCCCcccCCCCCcccccCcCC----C--CCccccchhhHHhhHHH--HHHH--HhccceeEecC
Q 026753 169 KFVDEPDEPTGLGGAVIPPGKGLRSALGLKE----G--GNSNSLVPCLLCLLTFS--VYEF--IMSDAVFIKLG 232 (233)
Q Consensus 169 ~~v~~~~ep~g~~~~~ipP~kg~~~~lGl~~----f--g~~aEL~NGRlAMLGfa--li~~--i~g~a~~~~~~ 232 (233)
...+. ++.+ . .+|+++| +++|+.. + -+.+|++|||+||+|+. ++.+ +.|.++.-+|+
T Consensus 156 -r~~~~-~~~~---~-~yPgg~f-DPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~ 222 (241)
T 2wsc_1 156 -RSMEK-DPEK---K-KYPGGAF-DPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 222 (241)
T ss_dssp -HTSCC-SSCC---S-SSCSCCS-CSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSS
T ss_pred -HHhcc-CCCC---C-CCCCCcc-cccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 11111 1111 1 2455455 4677752 1 14799999999999975 4544 56777765554
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.21 E-value=5.1e-07 Score=79.22 Aligned_cols=42 Identities=33% Similarity=0.399 Sum_probs=35.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCc
Q 026753 101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI 142 (233)
Q Consensus 101 t~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~ 142 (233)
.+.+|+.|||+||+|+++.++.|.+||+|+++|+.....-|+
T Consensus 176 ~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~ 217 (232)
T 2bhw_A 176 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 217 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTT
T ss_pred HHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChH
Confidence 357899999999999999999999999999999864444443
No 8
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.12 E-value=1.3e-06 Score=77.71 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=33.8
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhc
Q 026753 100 FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136 (233)
Q Consensus 100 ft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~ 136 (233)
+.+.+|+.|||+||+|+++.++.|++||+|+++|+..
T Consensus 192 ~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~ 228 (243)
T 3pl9_A 192 ILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT 228 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3467999999999999999999999999999999864
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.96 E-value=7.5e-07 Score=79.99 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=34.7
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhh
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 135 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~ 135 (233)
+.+.+.+|+.|||+||+||++.++.|.+||+|+++|+.
T Consensus 214 ~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 214 LKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp CTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44557899999999999999999999999999999886
No 10
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.90 E-value=1.3e-06 Score=78.79 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=31.1
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCC
Q 026753 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141 (233)
Q Consensus 98 ~Gft~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p 141 (233)
+...+.+|+.|||+||+|+++.++.|++||+|+++|+..-..-|
T Consensus 221 ~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP 264 (276)
T 2wsc_3 221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDP 264 (276)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--------
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCc
Confidence 33457889999999999999999999999999999986443334
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.78 E-value=3.5e-06 Score=74.56 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=37.5
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHH-HhhChhhHHhhhcccCCCccc
Q 026753 100 FTKQNELFVGRVAMIGFAASLLGE-GITGKGILAQLNLETGIPIYE 144 (233)
Q Consensus 100 ft~~aEl~NGRlAMlGf~a~l~~E-~~TG~giL~Ql~~~~G~p~~~ 144 (233)
..+.+|+.|||+||+|+++.++.| ++||+|+++|+.....-|+..
T Consensus 186 ~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~ 231 (241)
T 2wsc_1 186 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 231 (241)
T ss_dssp CSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC-
T ss_pred HHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCcccc
Confidence 346789999999999999999999 589999999998655556553
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=97.47 E-value=1.8e-05 Score=70.33 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=35.2
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhChhhHHhhhcccCCCcc
Q 026753 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143 (233)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~l~~E~~TG~giL~Ql~~~~G~p~~ 143 (233)
+..|+.|||+ |+|+++.+++|.+||+|+++++..-..-|+.
T Consensus 201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~ 241 (251)
T 2wsc_4 201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 241 (251)
T ss_dssp TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCC
T ss_pred HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhh
Confidence 6789999999 9999999999999999999988754444543
Done!