BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026754
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KXP|B Chain B, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 270
Score = 193 bits (491), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 126/201 (62%), Gaps = 12/201 (5%)
Query: 1 MEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYN 60
++ A+ LMRR+PP+ E VDQPL++ D+ GK+++LC+YN
Sbjct: 5 LDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYN 64
Query: 61 RDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDD 120
RD DSYRSPWSNKY PPLED P A LRKLE+EAN F YRD Y+EGG+SSVY+W+ D
Sbjct: 65 RDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLD 124
Query: 121 NEGFVACFLIKK--DGSKTAQGRRGHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLS 177
+ GF LIKK DGSK + G WD+IHV+EV + G A Y LTSTVML
Sbjct: 125 H-GFAGVILIKKAGDGSKKIK--------GCWDSIHVVEVQEKSSGRTAHYKLTSTVMLW 175
Query: 178 LTTDHESSGTFSLSGSIRRQV 198
L T+ SGT +L GS+ RQ+
Sbjct: 176 LQTNKTGSGTMNLGGSLTRQM 196
>pdb|3AA0|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Carmil
pdb|3AA1|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Ckip-1
pdb|3AA6|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Cd2ap
pdb|3AA7|B Chain B, Crystal Structure Of Actin Capping Protein
Length = 244
Score = 193 bits (490), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 126/201 (62%), Gaps = 12/201 (5%)
Query: 1 MEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYN 60
++ A+ LMRR+PP+ E VDQPL++ D+ GK+++LC+YN
Sbjct: 6 LDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYN 65
Query: 61 RDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDD 120
RD DSYRSPWSNKY PPLED P A LRKLE+EAN F YRD Y+EGG+SSVY+W+ D
Sbjct: 66 RDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLD 125
Query: 121 NEGFVACFLIKK--DGSKTAQGRRGHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLS 177
+ GF LIKK DGSK + G WD+IHV+EV + G A Y LTSTVML
Sbjct: 126 H-GFAGVILIKKAGDGSKKIK--------GCWDSIHVVEVQEKSSGRTAHYKLTSTVMLW 176
Query: 178 LTTDHESSGTFSLSGSIRRQV 198
L T+ SGT +L GS+ RQ+
Sbjct: 177 LQTNKTGSGTMNLGGSLTRQM 197
>pdb|3LK2|B Chain B, Crystal Structure Of Capz Bound To The Uncapping Motif
From Carmil
Length = 243
Score = 193 bits (490), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 126/201 (62%), Gaps = 12/201 (5%)
Query: 1 MEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYN 60
++ A+ LMRR+PP+ E VDQPL++ D+ GK+++LC+YN
Sbjct: 6 LDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYN 65
Query: 61 RDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDD 120
RD DSYRSPWSNKY PPLED P A LRKLE+EAN F YRD Y+EGG+SSVY+W+ D
Sbjct: 66 RDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLD 125
Query: 121 NEGFVACFLIKK--DGSKTAQGRRGHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLS 177
+ GF LIKK DGSK + G WD+IHV+EV + G A Y LTSTVML
Sbjct: 126 H-GFAGVILIKKAGDGSKKIK--------GCWDSIHVVEVQEKSSGRTAHYKLTSTVMLW 176
Query: 178 LTTDHESSGTFSLSGSIRRQV 198
L T+ SGT +L GS+ RQ+
Sbjct: 177 LQTNKTGSGTMNLGGSLTRQM 197
>pdb|1IZN|B Chain B, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|1IZN|D Chain D, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|3LK3|B Chain B, Crystal Structure Of Capz Bound To The Cpi And Csi
Uncapping Motifs From Carmil
pdb|3LK4|B Chain B, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|E Chain E, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|H Chain H, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|K Chain K, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|N Chain N, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|Q Chain Q, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|T Chain T, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|W Chain W, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|Z Chain Z, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|2 Chain 2, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|5 Chain 5, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|8 Chain 8, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|2KZ7|B Chain B, Solution Structure Of The Carmil Cah3aB DOMAIN BOUND TO
CAPPING Protein (Cp)
pdb|3AAA|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
V-1
pdb|3AAE|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|D Chain D, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|F Chain F, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|H Chain H, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|J Chain J, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
Length = 277
Score = 193 bits (490), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 126/201 (62%), Gaps = 12/201 (5%)
Query: 1 MEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYN 60
++ A+ LMRR+PP+ E VDQPL++ D+ GK+++LC+YN
Sbjct: 6 LDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYN 65
Query: 61 RDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDD 120
RD DSYRSPWSNKY PPLED P A LRKLE+EAN F YRD Y+EGG+SSVY+W+ D
Sbjct: 66 RDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLD 125
Query: 121 NEGFVACFLIKK--DGSKTAQGRRGHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLS 177
+ GF LIKK DGSK + G WD+IHV+EV + G A Y LTSTVML
Sbjct: 126 H-GFAGVILIKKAGDGSKKIK--------GCWDSIHVVEVQEKSSGRTAHYKLTSTVMLW 176
Query: 178 LTTDHESSGTFSLSGSIRRQV 198
L T+ SGT +L GS+ RQ+
Sbjct: 177 LQTNKTGSGTMNLGGSLTRQM 197
>pdb|4AKR|B Chain B, Crystal Structure Of The Cytoplasmic Actin Capping Protein
Cap32_34 From Dictyostelium Discoideum
pdb|4AKR|D Chain D, Crystal Structure Of The Cytoplasmic Actin Capping Protein
Cap32_34 From Dictyostelium Discoideum
Length = 290
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 128/198 (64%), Gaps = 6/198 (3%)
Query: 1 MEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYN 60
+ + LMRR+PP E +DQPL+V +D S K+++LC+YN
Sbjct: 24 LSCCLDLMRRLPPSQIEDNLAGLLDLVPDLTEDLLSSIDQPLKVAYDAVSKKDYLLCDYN 83
Query: 61 RDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWE-D 119
RDADSYRSPWSNKY PPL A YP ++LR +E++ANE+F IY + Y+EGG+SSVY W+ D
Sbjct: 84 RDADSYRSPWSNKYDPPLSGACYPSSKLRDIEVQANEIFEIYLNLYFEGGVSSVYCWDLD 143
Query: 120 DNEGFVACFLIKKDGSKTAQGRRGHLEEGAWDAIHVIEVAPEEEGIARYCLTSTVMLSLT 179
DN F A L+KK Q ++G G WD+IHV+EV ++ A Y LTSTVMLS+
Sbjct: 144 DN--FAAVVLMKK---TQDQSKKGQPMRGTWDSIHVVEVKLGKKDKAVYKLTSTVMLSIE 198
Query: 180 TDHESSGTFSLSGSIRRQ 197
TD++++G +L+GS+ RQ
Sbjct: 199 TDNDNTGKVNLAGSLTRQ 216
>pdb|1MSK|A Chain A, Methionine Synthase (Activation Domain)
Length = 331
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 154 HVIEVA------PEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQVIC 200
HVI V+ E+ G A YCL V L+ + G F+++G + +
Sbjct: 125 HVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALA 177
>pdb|1K7Y|A Chain A, E. Coli Meth C-Terminal Fragment (649-1227)
pdb|1K98|A Chain A, Adomet Complex Of Meth C-Terminal Fragment
Length = 577
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 154 HVIEVA------PEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQVIC 200
HVI V+ E+ G A YCL V L+ + G F+++G + +
Sbjct: 371 HVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALA 423
>pdb|3BUL|A Chain A, E. Coli I690cG743C METH C-Terminal Fragment (649-1227)
pdb|3IV9|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half In A "his-On" Conformation
pdb|3IVA|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half With Adohcy Bound
Length = 579
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 154 HVIEVA------PEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQVIC 200
HVI V+ E+ G A YCL V L+ + G F+++G + +
Sbjct: 373 HVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALA 425
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 137 TAQGRRGHLEEGAWDAIHVIEVAP 160
GR G+ EE +DAIHV AP
Sbjct: 139 VGDGRMGYAEEAPYDAIHVGAAAP 162
>pdb|3OM2|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
D257a
Length = 456
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 116 MWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEG 148
+ED++ F FL+ DGSKT+ + LE+G
Sbjct: 417 FYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
>pdb|3OM6|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
Length = 456
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 116 MWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEG 148
+ED++ F FL+ DGSKT+ + LE+G
Sbjct: 417 FYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
>pdb|3OM5|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
Length = 456
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 116 MWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEG 148
+ED++ F FL+ DGSKT+ + LE+G
Sbjct: 417 FYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
>pdb|3OM4|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
Length = 456
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 116 MWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEG 148
+ED++ F FL+ DGSKT+ + LE+G
Sbjct: 417 FYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
>pdb|3OM7|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
Length = 456
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 116 MWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEG 148
+ED++ F FL+ DGSKT+ + LE+G
Sbjct: 417 FYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,713,473
Number of Sequences: 62578
Number of extensions: 268734
Number of successful extensions: 553
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 16
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)