Query 026754
Match_columns 233
No_of_seqs 113 out of 144
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 12:13:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01115 F_actin_cap_B: F-acti 100.0 5E-114 1E-118 765.1 18.0 217 1-223 2-233 (242)
2 KOG3174 F-actin capping protei 100.0 9E-103 2E-107 693.8 17.1 216 1-222 6-232 (275)
3 PF01267 F-actin_cap_A: F-acti 97.9 5.8E-05 1.3E-09 68.6 9.2 203 3-222 5-234 (271)
4 KOG0836 F-actin capping protei 94.5 1 2.3E-05 42.0 12.9 196 3-222 12-241 (282)
5 TIGR01658 EYA-cons_domain eyes 46.3 6.8 0.00015 36.7 0.0 17 113-129 3-29 (274)
6 PF13199 Glyco_hydro_66: Glyco 46.0 84 0.0018 32.1 7.6 49 71-121 397-449 (559)
7 PF08727 P3A: Poliovirus 3A pr 46.0 2.7 5.8E-05 31.0 -2.1 25 27-51 16-40 (57)
8 PRK00301 aat leucyl/phenylalan 45.3 54 0.0012 30.1 5.6 25 97-121 114-138 (233)
9 PF02757 YLP: YLP motif; Inte 42.8 15 0.00032 18.2 0.9 9 71-79 1-9 (9)
10 PF14176 YxiJ: YxiJ-like prote 39.7 22 0.00049 29.2 2.1 23 80-102 12-34 (108)
11 PF03164 Mon1: Trafficking pro 35.0 1.8E+02 0.0038 28.2 7.7 78 28-121 279-364 (415)
12 TIGR00667 aat leucyl/phenylala 33.8 1.4E+02 0.003 26.6 6.2 31 97-127 84-116 (185)
13 PF15232 DUF4585: Domain of un 33.5 24 0.00053 27.3 1.3 26 41-73 7-32 (75)
14 KOG1852 Cell cycle-associated 29.7 69 0.0015 28.7 3.6 57 50-108 115-173 (223)
15 COG3360 Uncharacterized conser 28.9 1.3E+02 0.0027 23.3 4.4 32 149-180 33-69 (71)
16 PF03066 Nucleoplasmin: Nucleo 28.7 3E+02 0.0065 23.2 7.2 75 114-201 17-112 (149)
17 KOG4646 Uncharacterized conser 25.9 54 0.0012 28.8 2.3 51 12-62 71-132 (173)
18 PF03091 CutA1: CutA1 divalent 20.8 41 0.00089 26.7 0.6 11 108-118 33-43 (102)
19 PF11014 DUF2852: Protein of u 20.7 52 0.0011 27.3 1.1 10 95-104 68-77 (115)
20 PRK10645 divalent-cation toler 20.1 61 0.0013 26.3 1.4 25 108-133 43-69 (112)
No 1
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=100.00 E-value=5e-114 Score=765.12 Aligned_cols=217 Identities=54% Similarity=0.929 Sum_probs=192.0
Q ss_pred ChhhhhhhhcCCCccHHHHHHHHHccCcchhHHHhhcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCCCCCCCC-
Q 026754 1 MEAAMGLMRRMPPKHSETALSALLSLLPDHSSDLLSQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLE- 79 (233)
Q Consensus 1 ~daaLdLlRRLpP~~ie~nl~~l~~L~Pdl~edLLssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~l~- 79 (233)
+||||||||||||++||+||++||+|+|+||+||||+|||||||++|+++||+||+||||||||||||||||||+||++
T Consensus 2 ~d~aLdLlRRlpP~~ie~nl~~l~~L~Pdl~edLLssVD~PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~~~~ 81 (242)
T PF01115_consen 2 LDAALDLLRRLPPKKIEKNLSNLIDLVPDLTEDLLSSVDQPLKVARDKETGKDYLLCDYNRDGDSYRSPWSNKYYPPLEG 81 (242)
T ss_dssp HHHHHHHHTTS-GGGHHHHHHHHHHHSGGGHHHHHHHS----EEEEETTTTEEEEESGGGEETTEEE-TTT--EES--S-
T ss_pred hhHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEchhhCCeeEeecccCCcccccCCCCcccCCCccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CCCCCChHHHHHHHHHHHHHHHHHHhhhcCCeeeEEeeecCCC-CeeEEEEEEecCCCCcCCCCCCCCCcceeeeE
Q 026754 80 ----DALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNE-GFVACFLIKKDGSKTAQGRRGHLEEGAWDAIH 154 (233)
Q Consensus 80 ----dg~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~-gFagvvLiKK~~~~~~~~~~~~~~~G~WDSIH 154 (233)
||++||++||+||++||++||+||+||||||||||||||+|++ ||||||||||++++++. .+|+|||||
T Consensus 82 ~~~~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYyeGGvSSVYlWd~d~~~gFag~vLiKK~~~~~~~------~~g~WDSIH 155 (242)
T PF01115_consen 82 DDLEDGPVPSERLRKLEIEANEAFDIYRDLYYEGGVSSVYLWDLDDDDGFAGVVLIKKEGDPSNE------ISGSWDSIH 155 (242)
T ss_dssp ----S-----HHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETT--EEEEEEEEEEEE-TGCC------EEEEEEEEE
T ss_pred cccCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEecCCCcceeEEEEEEecCCCCCC------ccceEeeeE
Confidence 9999999999999999999999999999999999999999976 89999999999666543 789999999
Q ss_pred EEEeeecCCceeEEEEeeEEEEEeeeCCCCCceeeecceeeeecccCcC---------ccchhHHHhhHHHHhhhhhe
Q 026754 155 VIEVAPEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQVICHLN---------CYGVMFFETSWRMEFSCRLF 223 (233)
Q Consensus 155 V~EV~~~~~~~a~YklTSTV~L~l~~~~~~~g~~~LsGsltrq~e~~~~---------NiG~mIEdmE~~mR~s~~~~ 223 (233)
||||++..+++|||||||||||+|+++.++.|.|+||||||||+|++++ |||+|||+||++||++|++.
T Consensus 156 V~Ev~~~~~~~a~YklTSTV~L~l~~~~~~~g~~~LsGsltrq~e~~~~~~~~~~Hi~NiG~lIEdmE~~mR~~L~~V 233 (242)
T PF01115_consen 156 VFEVTESSSGTAHYKLTSTVMLSLKTNDDASGSFNLSGSLTRQTEKDLPVSDSSSHIANIGRLIEDMENKMRNLLQEV 233 (242)
T ss_dssp EEEEEEETTSEEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEEEEE-SSSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCeEEEEEEEEEEEEEecCCCCCceEeecceeehhhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999966666999999999999999998899999999999999999997 99999999999999999864
No 2
>KOG3174 consensus F-actin capping protein, beta subunit [Cytoskeleton]
Probab=100.00 E-value=8.8e-103 Score=693.82 Aligned_cols=216 Identities=51% Similarity=0.848 Sum_probs=207.7
Q ss_pred ChhhhhhhhcCCCccHHHHHHHHHccCcchhHHHhhcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCCCCCCCCC
Q 026754 1 MEAAMGLMRRMPPKHSETALSALLSLLPDHSSDLLSQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLED 80 (233)
Q Consensus 1 ~daaLdLlRRLpP~~ie~nl~~l~~L~Pdl~edLLssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~l~d 80 (233)
+||||||||||||++||+||++||+|+|+|||||||||||||||++|+++||+||+||||||||||||||||+|+||++|
T Consensus 6 lD~ALDLmRrLpPqqieKnL~nLIdL~P~L~edLLsSVdqplKia~dke~g~~yllcDynrdgDsyRsPwsnsy~pPled 85 (275)
T KOG3174|consen 6 LDCALDLMRRLPPQQIEKNLSNLIDLAPHLCEDLLSSVDQPLKIARDKESGKQYLLCDYNRDGDSYRSPWSNSYDPPLED 85 (275)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhchHHHHHHHhhcccceeehhhhhcCCeeeeeecCCCcccccCCCCcccCCcccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhhhcCCeeeEEeeecCCCCeeEEEEEEecCCCCcCCCCCCCCCcceeeeEEEEeee
Q 026754 81 ALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEGAWDAIHVIEVAP 160 (233)
Q Consensus 81 g~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~gFagvvLiKK~~~~~~~~~~~~~~~G~WDSIHV~EV~~ 160 (233)
|++||++||+||+.||.||++||++||||||||||+||++++||||+|||||++++.+. ..|||||||||||++
T Consensus 86 g~~Psd~lrklei~aN~af~~yrdly~egGvssVylwdld~~gfag~vlikK~~~~~~~------~~g~wdsIhvie~~~ 159 (275)
T KOG3174|consen 86 GVYPSDRLRKLEIEANLAFRSYRDLYYEGGVSSVYLWDLDFGGFAGVVLIKKAGDGHKN------IVGCWDSIHVIEVTE 159 (275)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhHHheecCcceEEEEeccCCCcccceEEeeccCCCCC------cccceeeeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999988765 679999999999996
Q ss_pred c-CCceeEEEEeeEEEEEeeeCCCCC-ceeeecceeeeecccCcC---------ccchhHHHhhHHHHhhhhh
Q 026754 161 E-EEGIARYCLTSTVMLSLTTDHESS-GTFSLSGSIRRQVICHLN---------CYGVMFFETSWRMEFSCRL 222 (233)
Q Consensus 161 ~-~~~~a~YklTSTV~L~l~~~~~~~-g~~~LsGsltrq~e~~~~---------NiG~mIEdmE~~mR~s~~~ 222 (233)
+ +.+++|||||||||||+++.+..+ |.|+|+|+||||+|++.+ |+|+|||+||++||+.+.+
T Consensus 160 ~~~~~s~~y~lTSTi~l~l~~~K~~s~~~mnl~g~Ltrq~e~d~~v~~~~tHian~gklve~~et~mr~~l~~ 232 (275)
T KOG3174|consen 160 ETSLRSAHYKLTSTIMLWLSTTKNESLGAMNLGGSLTRQTEKDVAVDDSRTHIANQGKLVEDMETKMRNLLNE 232 (275)
T ss_pred ccccceeEEEeeeEEEEEecCCCccchhhhhhhhHhhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 578899999999999998887766 999999999999999887 9999999999999999875
No 3
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=97.92 E-value=5.8e-05 Score=68.61 Aligned_cols=203 Identities=18% Similarity=0.278 Sum_probs=120.7
Q ss_pred hhhhhhhcCCCccHHHHHHHHHccCcc--hh-HHHhh-----cCCCceeeeeecccCceeeecccCCC-CCCCCCCCCCC
Q 026754 3 AAMGLMRRMPPKHSETALSALLSLLPD--HS-SDLLS-----QVDQPLQVLFDEESGKEFILCEYNRD-ADSYRSPWSNK 73 (233)
Q Consensus 3 aaLdLlRRLpP~~ie~nl~~l~~L~Pd--l~-edLLs-----sVDqPLkv~~d~~~~k~yL~CdYNRD-gDSYRSPwSNk 73 (233)
.|-+++..=||-++.+-+++|..|+++ +. +.+.. .++|-..|..+ ..+..+|.|.||+. ++.|==|=+++
T Consensus 5 ii~~fl~~aPPGE~~~V~~Dlr~l~~dd~~~~~~i~~a~~~yn~~q~~~v~~~-~~~~~viis~~n~~~~~ry~Dp~~~~ 83 (271)
T PF01267_consen 5 IISSFLLQAPPGEFNEVFNDLRTLLGDDSLLKEGIAEAFEQYNEEQFIPVKLP-GSDHKVIISKYNKLGGNRYFDPRSKK 83 (271)
T ss_dssp HHHHHHHT--TT-HHHHHHHHHHHHT-HHHHHHHSHHHHHHHHHHTTEEE--T-TSSS-EEE-GGGBESTTEEEETTTTE
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHCcEEEEeC-CCCcceEEecccccCCCeEEEeccCc
Confidence 466788889999999999999999998 22 22222 24555555543 33578999999999 44443333332
Q ss_pred ---CCCC------CCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCeeeEEeeecCCC-CeeEEEEEEecCCCCcCCCCC
Q 026754 74 ---YHPP------LEDALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNE-GFVACFLIKKDGSKTAQGRRG 143 (233)
Q Consensus 74 ---Y~P~------l~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~-gFagvvLiKK~~~~~~~~~~~ 143 (233)
|+.- .++...|++.+-.+-.+..+++..|.+-+|..|+++||-=+.++. .++-|+.=.|- ++.+
T Consensus 84 ~F~~DHl~~~~~d~e~~~~~~~~~e~~R~~l~~~l~~Yv~~hy~~g~~~V~~~~~~~~~~l~i~I~~~k~-n~~N----- 157 (271)
T PF01267_consen 84 SFSVDHLKQKASDVEPYEPPDEELESYRDALDKALEKYVKEHYPSGACGVYPKSEEDKETLVICIVAHKY-NPKN----- 157 (271)
T ss_dssp EEEEETTTTEEEEEEE-----TSSHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEETTEEEEEEEEEEEEE-EGGG-----
T ss_pred EEEEeeeccEEccCccccccccchHHHHHHHHHHHHHHHHHhccCceeEEEeccCCCccEEEEEEEeccc-cccc-----
Confidence 2220 012224566677777788899999999999889999998887642 26666655443 3333
Q ss_pred CCCCcceeeeEEEEeeecCCceeEEEEeeEEEEEeeeCCCCCceeeecce--------eeeecccCcCccchhHHHhhHH
Q 026754 144 HLEEGAWDAIHVIEVAPEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGS--------IRRQVICHLNCYGVMFFETSWR 215 (233)
Q Consensus 144 ~~~~G~WDSIHV~EV~~~~~~~a~YklTSTV~L~l~~~~~~~g~~~LsGs--------ltrq~e~~~~NiG~mIEdmE~~ 215 (233)
.-.|.|-|.=+|.+. .++ .|+.+|-+.+-==.+ |.+.|..+ .+.+ ++.+.+|=+.|++.|++
T Consensus 158 -fwnG~WrS~w~~~~~-~~~-----~l~G~I~V~vHYyEd--GNVqL~~~k~~~~~~~~~~~-~~~a~~iv~~I~~~E~~ 227 (271)
T PF01267_consen 158 -FWNGRWRSEWTVDFS-SSG-----TLSGKIKVQVHYYED--GNVQLNSSKEVSETVSVSND-EQFASDIVKAIKEAENK 227 (271)
T ss_dssp -TEEEEEEEEEEEEEE-TTE-----EEEEEEEEEEEE-TT--EEEEEEEEEEEEEEEE--SH-HHHHHHHHHHHHHHHHH
T ss_pred -ccCceeeEEEEEecC-CCc-----eEEEEEEeeEEEEee--cEEEEEEccccceeeccCCh-hhhHHHHHHHHHHHHHH
Confidence 257999999999974 221 556666555422111 33333322 1111 22334788899999998
Q ss_pred HHhhhhh
Q 026754 216 MEFSCRL 222 (233)
Q Consensus 216 mR~s~~~ 222 (233)
+-.+|-+
T Consensus 228 ~q~~L~e 234 (271)
T PF01267_consen 228 YQTSLNE 234 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877754
No 4
>KOG0836 consensus F-actin capping protein, alpha subunit [Cytoskeleton]
Probab=94.47 E-value=1 Score=42.05 Aligned_cols=196 Identities=16% Similarity=0.251 Sum_probs=118.0
Q ss_pred hhhhhhhcCCCccHHHHHHHHHccCcchh------HHHh--hcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCCC
Q 026754 3 AAMGLMRRMPPKHSETALSALLSLLPDHS------SDLL--SQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKY 74 (233)
Q Consensus 3 aaLdLlRRLpP~~ie~nl~~l~~L~Pdl~------edLL--ssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY 74 (233)
.|-++++.=||-.+.+-.++|+.|.-+=. .+-+ =.+||=..|.-+-. ..+=|...||+-|++ +|
T Consensus 12 ii~kfi~~APPGEfneVf~Dlr~ll~~d~l~~e~~~~A~~qYn~~~~vpv~i~g~-~~~viIS~~n~lg~~-------rf 83 (282)
T KOG0836|consen 12 IISKFILHAPPGEFNEVFNDLRLLLSNDELLKEAAHEAFAQYNVDQMVPVEIDGG-ANQVIISEYNDLGNN-------RF 83 (282)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHhcchhHHHHHHHHHHHHhchhcceeEecCCC-CCceEEecccccCcc-------ee
Confidence 46788999999999999999999874311 1111 24565443433321 257899999999963 33
Q ss_pred CCCCCC---------------CCCC--ChHHHHHHHHHHHHHHHHHHhhhcCCeeeEEeeecCCC--CeeEEEEEEecCC
Q 026754 75 HPPLED---------------ALYP--PAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNE--GFVACFLIKKDGS 135 (233)
Q Consensus 75 ~P~l~d---------------g~~P--S~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~--gFagvvLiKK~~~ 135 (233)
+-|-.. .+++ ...........-..-..|-.-+|-||+|.| +.-.++. .|..|+-=- .-+
T Consensus 84 ~Dp~~k~sFk~dhl~kea~d~qp~~~~~~~~E~~r~~l~~~l~~y~~~hy~~~~t~~-vkk~dg~~~~l~icIesh-~y~ 161 (282)
T KOG0836|consen 84 LDPVNKKSFKYDHLRKEAEDVQPYEAEINIIEIWRYALDAQLKKYVSDHYPKGVTFV-VKKSDGEQETLTICIESH-QYQ 161 (282)
T ss_pred cchhhceeeeHHHHHHHhccCCCcchhhhhhHHHHHHHHHHHHHHHHhccCCCceEE-EeccCCcceEEEEEEeec-ccC
Confidence 332211 1111 111122222444567789999999999988 7766632 244444322 222
Q ss_pred CCcCCCCCCCCCcceeeeEEEEeee-c--CCc---eeEEEEeeEEEEEeeeCCCCCceeeecceeeeecc-cCcCccchh
Q 026754 136 KTAQGRRGHLEEGAWDAIHVIEVAP-E--EEG---IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQVI-CHLNCYGVM 208 (233)
Q Consensus 136 ~~~~~~~~~~~~G~WDSIHV~EV~~-~--~~~---~a~YklTSTV~L~l~~~~~~~g~~~LsGsltrq~e-~~~~NiG~m 208 (233)
+ .|.=.|.|-|+-.|.|++ . .|+ ++||-=..-|-|.-.. +-.-.+++| .+ +.+.-+=++
T Consensus 162 p------kNfwNG~WRS~w~~~v~~~~~l~G~i~vqvHYyEdGNV~l~s~K--d~qds~~vs------n~~q~a~e~~~i 227 (282)
T KOG0836|consen 162 P------KNFWNGRWRSEWNYDVQPTTELKGRIKVQVHYYEDGNVQLVSSK--DIQDSLTVS------NEVQTAKEFIKI 227 (282)
T ss_pred c------ccccCCceeeeeeeccCchheeeeEEEEEEEEEecCcEEEEecC--cchhhheee------chHHHHHHHHHH
Confidence 2 234679999999999986 1 233 2777766666555332 211223333 33 333467889
Q ss_pred HHHhhHHHHhhhhh
Q 026754 209 FFETSWRMEFSCRL 222 (233)
Q Consensus 209 IEdmE~~mR~s~~~ 222 (233)
||+.|+..-.++.+
T Consensus 228 I~~~Eneyq~ai~e 241 (282)
T KOG0836|consen 228 IEEAENEYQAAISE 241 (282)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 5
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=46.29 E-value=6.8 Score=36.69 Aligned_cols=17 Identities=29% Similarity=0.825 Sum_probs=13.5
Q ss_pred eEEeeecCC----------CCeeEEEE
Q 026754 113 SVYMWEDDN----------EGFVACFL 129 (233)
Q Consensus 113 SVYlWdld~----------~gFagvvL 129 (233)
.||+||+|+ |.||+-|=
T Consensus 3 ~VfvWDlDETlIif~SLL~GsyA~~f~ 29 (274)
T TIGR01658 3 NVYVWDMDETLILLHSLLNGSYAESFN 29 (274)
T ss_pred eeEEEeccchHHHHHHhhcchHHHHcC
Confidence 599999996 67887654
No 6
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=45.99 E-value=84 Score=32.05 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCee----eEEeeecCC
Q 026754 71 SNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEGGIS----SVYMWEDDN 121 (233)
Q Consensus 71 SNkY~P~l~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvS----SVYlWdld~ 121 (233)
+++||| .....=|+.|.+-...+=+-+-+|.+|.++||+- +.=.+..++
T Consensus 397 ~~eYfP--~~~~~m~~~l~~~l~~YYdF~tAYenLLrd~~~~~~~~~~~~~~~~~ 449 (559)
T PF13199_consen 397 ANEYFP--NRNLKMSEELKKALYSYYDFITAYENLLRDGGVENVDASNVTVENAG 449 (559)
T ss_dssp -SSSTT-----SB--HHHHHHHHHHHHHHHHTHHHHHSS--EE-SS--EEE-TTS
T ss_pred cccccc--CCCcccCHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeEEEcCC
Confidence 688999 4455567999999999999999999999999874 555566554
No 7
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=45.99 E-value=2.7 Score=31.01 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=19.0
Q ss_pred CcchhHHHhhcCCCceeeeeecccC
Q 026754 27 LPDHSSDLLSQVDQPLQVLFDEESG 51 (233)
Q Consensus 27 ~Pdl~edLLssVDqPLkv~~d~~~~ 51 (233)
.|....|||+|||.|=-+.+|++.|
T Consensus 16 ~P~~I~DLL~SV~~~eV~~YC~~~G 40 (57)
T PF08727_consen 16 PPPAIADLLRSVDSPEVREYCEEQG 40 (57)
T ss_dssp SS-TTHHHHHHH--HHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHCC
Confidence 4888999999999998888888766
No 8
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=45.31 E-value=54 Score=30.08 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhcCCeeeEEeeecCC
Q 026754 97 EVFAIYRDQYYEGGISSVYMWEDDN 121 (233)
Q Consensus 97 ~~Fd~Yr~lYYeGGvSSVYlWdld~ 121 (233)
++.++|.+|+-.|=.-||=+|+-+.
T Consensus 114 e~~~aY~~LH~~G~AHSVE~W~~~~ 138 (233)
T PRK00301 114 EIIEAYLELHELGHAHSVEVWQGGE 138 (233)
T ss_pred HHHHHHHHHHHcCceEEEEEEECCE
Confidence 5567899999999889999998653
No 9
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=42.82 E-value=15 Score=18.22 Aligned_cols=9 Identities=67% Similarity=1.246 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q 026754 71 SNKYHPPLE 79 (233)
Q Consensus 71 SNkY~P~l~ 79 (233)
||+|-||.+
T Consensus 1 s~eYLpP~~ 9 (9)
T PF02757_consen 1 SNEYLPPVE 9 (9)
T ss_pred CccccCCCC
Confidence 688999863
No 10
>PF14176 YxiJ: YxiJ-like protein
Probab=39.65 E-value=22 Score=29.21 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHHH
Q 026754 80 DALYPPAELRKLEIEANEVFAIY 102 (233)
Q Consensus 80 dg~~PS~~LR~LEi~aN~~Fd~Y 102 (233)
.+|+|++.+|++|...+.-|+.+
T Consensus 12 ~~PfP~~~~~k~~~d~~~~fe~~ 34 (108)
T PF14176_consen 12 HKPFPSDDIRKIERDLESDFEDD 34 (108)
T ss_pred cCCCChHHHHHHHHHHHhhhhhh
Confidence 48999999999999988888654
No 11
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=35.04 E-value=1.8e+02 Score=28.19 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=49.9
Q ss_pred cchhHHHhhcCCCc--eeeeeecccC-ceeeecccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 026754 28 PDHSSDLLSQVDQP--LQVLFDEESG-KEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRD 104 (233)
Q Consensus 28 Pdl~edLLssVDqP--Lkv~~d~~~~-k~yL~CdYNRDgDSYRSPwSNkY~P~l~dg~~PS~~LR~LEi~aN~~Fd~Yr~ 104 (233)
..+.+.|.+++..| ..+..-+..+ +.|+ |+|+-+++|.-|--..++++..-|+ ..+..|+.
T Consensus 279 ~~~~~~l~~~~~~~~~~~~~~ig~p~L~HFi----------YKsk~~~Q~~~p~~~~~~~~~~~~~------rL~~~Y~~ 342 (415)
T PF03164_consen 279 SGCLEALISALSNSSSYSISDIGIPELRHFI----------YKSKSNNQFVSPEFSPPYNSPDERK------RLFRLYQK 342 (415)
T ss_pred ccHHHHHHHHHHhhcCCCcccCCCCceEEEE----------EEecCCCceeCCCCCCCCCChHHHH------HHHHHHHH
Confidence 44555666666663 3332222233 7888 9999999998765556777776555 67888888
Q ss_pred hhh---c--CCeeeEEeeecCC
Q 026754 105 QYY---E--GGISSVYMWEDDN 121 (233)
Q Consensus 105 lYY---e--GGvSSVYlWdld~ 121 (233)
+|- . ..+...|.|..++
T Consensus 343 L~~~~h~~~~~~k~~y~~~~~e 364 (415)
T PF03164_consen 343 LHSSMHSSSRPLKLIYRWTEKE 364 (415)
T ss_pred HHHHHhCCCCCeeEEEEecCCc
Confidence 882 2 2356777776443
No 12
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=33.78 E-value=1.4e+02 Score=26.60 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhcCCeeeEEeeecCC--CCeeEE
Q 026754 97 EVFAIYRDQYYEGGISSVYMWEDDN--EGFVAC 127 (233)
Q Consensus 97 ~~Fd~Yr~lYYeGGvSSVYlWdld~--~gFagv 127 (233)
++-+.|.+|.=.|=.-||=+|+-+. ||.=||
T Consensus 84 e~~~aY~~LH~~G~AHSvEvw~~~~LvGGlYGv 116 (185)
T TIGR00667 84 ELVEAYHRLHELGHAHSFEVWQGDELVGGMYGI 116 (185)
T ss_pred HHHHHHHHHHHhCceEEEEEEECCEEEEeeeee
Confidence 4567788888888789999998553 444443
No 13
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=33.52 E-value=24 Score=27.34 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=19.5
Q ss_pred ceeeeeecccCceeeecccCCCCCCCCCCCCCC
Q 026754 41 PLQVLFDEESGKEFILCEYNRDADSYRSPWSNK 73 (233)
Q Consensus 41 PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNk 73 (233)
+=||..|++||++|+ -|.=|.|=.-.
T Consensus 7 qrKvL~DP~SG~Yy~-------vd~P~Qp~~k~ 32 (75)
T PF15232_consen 7 QRKVLQDPESGQYYV-------VDAPVQPKTKT 32 (75)
T ss_pred CccEeecCCCCCEEE-------EecCCCcceee
Confidence 448999999999998 46666655544
No 14
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=29.66 E-value=69 Score=28.69 Aligned_cols=57 Identities=26% Similarity=0.409 Sum_probs=33.9
Q ss_pred cCceeeecccCCCC-CCCCCC-CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhc
Q 026754 50 SGKEFILCEYNRDA-DSYRSP-WSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYE 108 (233)
Q Consensus 50 ~~k~yL~CdYNRDg-DSYRSP-wSNkY~P~l~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYYe 108 (233)
+-|+-=.-||-|.- |.=-.| =||||+|.- --+--..+-||-.-+-.+|.++-..||-
T Consensus 115 tpkecpaidytrhtldgaacllnsnkyfpsr--vsikessv~klgsvcrrvyrifsha~fh 173 (223)
T KOG1852|consen 115 TPKECPAIDYTRHTLDGAACLLNSNKYFPSR--VSIKESSVAKLGSVCRRVYRIFSHAYFH 173 (223)
T ss_pred CcccCCcccchhhccccccccccCCccCCcc--cchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445777731 222233 389999932 2233345778888888888888666653
No 15
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=28.86 E-value=1.3e+02 Score=23.29 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=23.8
Q ss_pred ceeeeEEEEeeec-----CCceeEEEEeeEEEEEeee
Q 026754 149 AWDAIHVIEVAPE-----EEGIARYCLTSTVMLSLTT 180 (233)
Q Consensus 149 ~WDSIHV~EV~~~-----~~~~a~YklTSTV~L~l~~ 180 (233)
+-|-+.+|||.+. .|..+||++|--|=+.|..
T Consensus 33 t~~~l~wfeV~~~rg~v~~g~v~hyqv~lkVgFrl~~ 69 (71)
T COG3360 33 TLDNLDWFEVVETRGHVVDGAVAHYQVTLKVGFRLDD 69 (71)
T ss_pred hhhcceEEEEEeecccEeecceEEEEEEEEEEEEecC
Confidence 4566788998863 3677999999888777653
No 16
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=28.72 E-value=3e+02 Score=23.22 Aligned_cols=75 Identities=24% Similarity=0.238 Sum_probs=38.2
Q ss_pred EEeeec-CCCCeeEEEEEEecCCCCcCCCCCCCCCcceeeeEEEEeee--cCCce-----eEEEE-------------ee
Q 026754 114 VYMWED-DNEGFVACFLIKKDGSKTAQGRRGHLEEGAWDAIHVIEVAP--EEEGI-----ARYCL-------------TS 172 (233)
Q Consensus 114 VYlWdl-d~~gFagvvLiKK~~~~~~~~~~~~~~~G~WDSIHV~EV~~--~~~~~-----a~Ykl-------------TS 172 (233)
-|-|+. +++.-.--+.||-..=+ .|.=|-.|||||.. ..+.. |+-|. |.
T Consensus 17 ~~~f~~~~~d~~~h~L~L~~v~Lg----------a~AKdE~~vVe~e~~~~eg~~~kv~lAtLk~s~~~~vsL~~~~~~p 86 (149)
T PF03066_consen 17 DYTFKVDDNDENEHQLSLRQVCLG----------AGAKDELNVVEVEAMNYEGKPIKVPLATLKMSVQPMVSLDGFEITP 86 (149)
T ss_dssp EEEE-TTSSSSSCEEEEEEEEEE-----------TTS-SSEEEEEEEEEBTTSCEEEEEEEEEBTTTBSEEEEEEEEESS
T ss_pred eEEEeCCCCCCcccEEEEEEeecC----------CCccCceeEEEEEeccCCCCeeEEEEEEecCCccceEEcCCcccCC
Confidence 688887 44444455555554322 12334789999864 12331 44432 33
Q ss_pred EEEEEeeeCCCCCceeeecceeeeecccC
Q 026754 173 TVMLSLTTDHESSGTFSLSGSIRRQVICH 201 (233)
Q Consensus 173 TV~L~l~~~~~~~g~~~LsGsltrq~e~~ 201 (233)
-|.|.|. .++|++.|||......+.+
T Consensus 87 pVtf~L~---~GsGPVhisG~~~~~~~~d 112 (149)
T PF03066_consen 87 PVTFRLK---CGSGPVHISGQHLVAMEED 112 (149)
T ss_dssp SEEEEEE---ESSS-EEEEEEEEEE----
T ss_pred CEEEEEE---ecCCCEEeeCccccccccc
Confidence 3444443 2569999999986555443
No 17
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=25.90 E-value=54 Score=28.84 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=36.6
Q ss_pred CCccHHHHHHHHHccCcchh--HHHhhcCCCceeeeeecc---------cCceeeecccCCC
Q 026754 12 PPKHSETALSALLSLLPDHS--SDLLSQVDQPLQVLFDEE---------SGKEFILCEYNRD 62 (233)
Q Consensus 12 pP~~ie~nl~~l~~L~Pdl~--edLLssVDqPLkv~~d~~---------~~k~yL~CdYNRD 62 (233)
+-.-+|-.+.+||+||||=+ +-++..--.||-|..-.. .+-.|++|+|||-
T Consensus 71 ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt 132 (173)
T KOG4646|consen 71 NELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT 132 (173)
T ss_pred cHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc
Confidence 44557888999999998765 567777778876654322 2334889999983
No 18
>PF03091 CutA1: CutA1 divalent ion tolerance protein; InterPro: IPR004323 The CutA family of proteins which exhibit ion tolerance are found in a large variety of species []. In E.Coli, two operons on the cutA locus contain genes that encode three proteins, CutA1, CutA2 and CutA3. CutA1 proteins are found in the cytoplasm while CutA2 (50kDa) and CutA3 (24kDa) are located in the inner membrane. Although the role of E. Coli CutA1 is not clear, studies on E. coli cutA locus describe some mutations that lead to an increase in copper sensitivity, thus suggesting a role in ion tolerance []. To date, the structure of CutA proteins from several species have been solved [, ]. The crystal structures of the E.Coli and rat CutA1 proteins show both these proteins to be trimeric in the crystal as well as in solution[].Trimerisation seems to supported by the formation of beta sheets between the subunit. This trimeric structure suggests the protein may be involved in signal transduction due to architectural similarities with PII signal transducer proteins []. Recent studies propose that mammalian CutA1 in the neuronal cell membrane acts as an anchor for acetylcholinesterase (AChE)1 [].; GO: 0010038 response to metal ion; PDB: 1O5J_A 1KR4_A 1VHF_A 3GSD_H 1OSC_A 3OPK_A 4E98_C 1V9B_F 1UKU_A 2E66_C ....
Probab=20.78 E-value=41 Score=26.66 Aligned_cols=11 Identities=45% Similarity=0.872 Sum_probs=9.3
Q ss_pred cCCeeeEEeee
Q 026754 108 EGGISSVYMWE 118 (233)
Q Consensus 108 eGGvSSVYlWd 118 (233)
.+++.|+|.|+
T Consensus 33 ~~~i~S~Y~W~ 43 (102)
T PF03091_consen 33 IPPITSIYRWE 43 (102)
T ss_dssp EEEEEEEEEET
T ss_pred cCCceeEEEEC
Confidence 35789999997
No 19
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=20.69 E-value=52 Score=27.30 Aligned_cols=10 Identities=40% Similarity=0.787 Sum_probs=8.9
Q ss_pred HHHHHHHHHH
Q 026754 95 ANEVFAIYRD 104 (233)
Q Consensus 95 aN~~Fd~Yr~ 104 (233)
-|.|||.||+
T Consensus 68 GN~AFD~YR~ 77 (115)
T PF11014_consen 68 GNAAFDEYRE 77 (115)
T ss_pred cchhHHHHHH
Confidence 4999999996
No 20
>PRK10645 divalent-cation tolerance protein CutA; Provisional
Probab=20.06 E-value=61 Score=26.29 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=15.1
Q ss_pred cCCeeeEEeee--cCCCCeeEEEEEEec
Q 026754 108 EGGISSVYMWE--DDNEGFVACFLIKKD 133 (233)
Q Consensus 108 eGGvSSVYlWd--ld~~gFagvvLiKK~ 133 (233)
-+|+.|+|.|+ ++. +-=-.++||-.
T Consensus 43 ~p~i~S~Y~W~G~i~~-~~E~~l~iKT~ 69 (112)
T PRK10645 43 LPGATSLYYWEGKLEQ-EYEVQMLLKTT 69 (112)
T ss_pred CCCeeEEEEECCEEee-eeEEEEEEEeC
Confidence 46799999998 332 12234555543
Done!