BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026757
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp
Length = 165
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 88 AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQ-DKVFKDVIEPLESVS--VNLIPTGK 144
+ + G + D DGY F+YP GW +V +E D VF D+IE E+VS VN + + K
Sbjct: 1 GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTK 60
Query: 145 QDIRDFGPPQEVAETLIKKFLAPPT--QKTKIIAASENDVDGKAYYAFEFTAQAPN---- 198
+ + G P+EV + L++ +AP + + +IAA+ D K YY E+ P
Sbjct: 61 S-LEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNT 119
Query: 199 -YIRHALGVVTVGNG 212
RH L + V G
Sbjct: 120 AQQRHNLSSIAVSRG 134
>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From
Synechocystis Sp. Pcc 6803
Length = 170
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 99 TDKKDGYSFVYPFGWQEVIIEGQ----DKVFKDVIEPLESVSVNL--IPTGKQDIRDFGP 152
+D KDGY F+YP GW V ++G D VF+D+IE E++SV + IP+ K + D G
Sbjct: 18 SDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LTDLGT 76
Query: 153 PQEVAETLIKKF--LAPPTQKTKIIAASENDVDGKAYYAFEFTAQ-APNYIRHALGVVTV 209
+V +K + ++ ++I A D DG+ YY E+ N RH L VT
Sbjct: 77 ATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTT 136
Query: 210 GNGMKLIT 217
G KLIT
Sbjct: 137 NRG-KLIT 143
>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving
Complex Of Photosystem Ii From Higher Plants
pdb|1V2B|B Chain B, Crystal Structure Of Psbp Protein In The Oxygen-Evolving
Complex Of Photosystem Ii From Higher Plants
Length = 177
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 21/135 (15%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
DG+ P W +EV GQ F+D + +V V + PT K+ I DFG P++
Sbjct: 15 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 74
Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
+ L+ + F + ++ S +V GK YY TA +
Sbjct: 75 VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGK 134
Query: 202 HALGVVTVGNGMKLI 216
H L TV +G I
Sbjct: 135 HQLVTATVNDGKLYI 149
>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A
Resolution
Length = 190
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 21/135 (15%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
DG+ + P W +E GQ ++D + ++SV + PT K+ I DFG P++
Sbjct: 28 DGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQ 87
Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
+ L+ K F + ++ +S VDGK YY+ TA +
Sbjct: 88 VDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGK 147
Query: 202 HALGVVTVGNGMKLI 216
H + TV +G I
Sbjct: 148 HQVIAATVKDGKLYI 162
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 76 WVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQD 122
W S V Q+ F + +K + V K G++ P GW ++ QD
Sbjct: 317 WSSSVTQSEVFFGDKVDKCYKCVV--KQGHTLFVPTGWIHAVLTSQD 361
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain
pdb|3KVA|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With
Alpha- Ketoglutarate
pdb|3KVB|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With N-
Oxalylglycine
pdb|3U78|A Chain A, E67-2 Selectively Inhibits Kiaa1718, A Human Histone H3
Lysine 9 Jumonji Demethylase
Length = 397
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 76 WVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQD 122
W S V Q+ F + +K + V K G++ P GW ++ QD
Sbjct: 226 WSSSVTQSEVFFGDKVDKCYKCVV--KQGHTLFVPTGWIHAVLTSQD 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,849,842
Number of Sequences: 62578
Number of extensions: 271845
Number of successful extensions: 669
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 7
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)