Query 026757
Match_columns 233
No_of_seqs 169 out of 303
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 100.0 1.6E-36 5.5E-41 256.1 12.5 137 90-228 4-161 (177)
2 2xb3_A PSBP protein; photosynt 100.0 1.4E-35 4.8E-40 245.7 17.8 137 91-227 4-149 (165)
3 2lnj_A SLL1418 protein, putati 100.0 7.5E-37 2.6E-41 255.5 0.0 139 90-228 9-155 (170)
4 1tu1_A Hypothetical protein PA 96.5 0.11 3.6E-06 41.4 14.1 119 95-224 3-123 (148)
5 3lyd_A Uncharacterized protein 93.8 2.2 7.6E-05 34.8 13.8 115 103-226 18-141 (161)
6 3hlz_A Uncharacterized protein 71.2 5.3 0.00018 34.8 5.0 44 96-140 5-49 (269)
7 4exr_A Putative lipoprotein; Y 45.1 88 0.003 25.2 7.9 60 152-220 33-92 (174)
8 4exr_A Putative lipoprotein; Y 43.0 1.1E+02 0.0037 24.6 8.1 39 149-193 112-150 (174)
9 2pq4_B Periplasmic nitrate red 35.0 42 0.0014 20.3 3.3 11 62-72 3-13 (35)
10 2khr_A Protein MBTH; sideropho 27.7 65 0.0022 22.9 3.7 29 92-120 13-46 (74)
11 3stb_C RNA-editing complex pro 27.0 87 0.003 25.0 4.8 44 145-193 88-136 (148)
12 2pst_X Hypothetical protein PA 26.9 70 0.0024 22.7 3.8 29 92-120 11-44 (74)
13 3ld7_A LIN0431 protein; DUF131 26.5 1E+02 0.0034 22.9 4.8 41 181-224 13-62 (101)
14 2lpd_A Uncharacterized protein 25.8 69 0.0024 23.8 3.8 29 92-120 24-57 (95)
15 2le2_A P56; UDG inhibition, DN 20.6 47 0.0016 22.0 1.7 16 179-194 16-31 (56)
16 2q7a_A Cell surface heme-bindi 20.1 3.4E+02 0.012 21.7 7.4 52 136-194 8-65 (152)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=1.6e-36 Score=256.07 Aligned_cols=137 Identities=23% Similarity=0.396 Sum_probs=114.4
Q ss_pred cccCCceeeeeCCCCeEEecCCCceEee---ecCceeeeeccCCCCceEEEEEecCCCCCccccCChHHHHH----HHHH
Q 026757 90 ESNKGFLSVTDKKDGYSFVYPFGWQEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAE----TLIK 162 (233)
Q Consensus 90 e~~~gf~~y~D~~dgYsf~yP~~W~e~~---~~G~d~~f~d~~~~~enVsVvv~P~~~~si~dlGspeeva~----~Ll~ 162 (233)
+.+.||++|. .+||+|+||.+|++++ ++|+|++|+|+++.++||+|+|+|+++++|+|||+|++|++ .|++
T Consensus 4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~ 81 (177)
T 1v2b_A 4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGR 81 (177)
T ss_dssp ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC--
T ss_pred CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHH
Confidence 4568999997 9999999999999644 56999999999999999999999999999999999999654 4667
Q ss_pred HhcCCC-----C------CceeEEEeeEeccCCeEEEEEEEEEeCCC---CcceEEEEEEEeCCeEEEEEEEecceeeeE
Q 026757 163 KFLAPP-----T------QKTKIIAASENDVDGKAYYAFEFTAQAPN---YIRHALGVVTVGNGMKLITTREFEVHHFSF 228 (233)
Q Consensus 163 ~~~~~~-----~------~~a~ll~a~~r~~dGk~YY~~Ey~v~~~~---~~RH~la~vtv~~gkLYtl~~q~~~~~f~~ 228 (233)
+++++. + ++++||++++++.||++||+|||.++.++ +.||+|+++||+|||||+|++|+++.||.-
T Consensus 82 ~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k 161 (177)
T 1v2b_A 82 QAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFK 161 (177)
T ss_dssp ----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCST
T ss_pred HhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhhh
Confidence 767641 2 67999999999999999999999999877 899999999999999999999999999953
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=1.4e-35 Score=245.69 Aligned_cols=137 Identities=31% Similarity=0.621 Sum_probs=128.0
Q ss_pred ccCCceeeeeCCCCeEEecCCCceEeeec-CceeeeeccCCCCceEEEEEecCCC-CCccccCChHHHHHHHHHHhcCCC
Q 026757 91 SNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKFLAPP 168 (233)
Q Consensus 91 ~~~gf~~y~D~~dgYsf~yP~~W~e~~~~-G~d~~f~d~~~~~enVsVvv~P~~~-~si~dlGspeeva~~Ll~~~~~~~ 168 (233)
.+.||++|.|+.+||+|.||.+|+++.++ |+|++|+|+.+..+||+|+|.|+++ ++|+|||+|++|+++|+++.++++
T Consensus 4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~ 83 (165)
T 2xb3_A 4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS 83 (165)
T ss_dssp --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence 45799999999999999999999999998 8999999999999999999999986 999999999999999999999877
Q ss_pred --CCceeEEEeeEeccCCeEEEEEEEEEeCCC-----CcceEEEEEEEeCCeEEEEEEEecceeee
Q 026757 169 --TQKTKIIAASENDVDGKAYYAFEFTAQAPN-----YIRHALGVVTVGNGMKLITTREFEVHHFS 227 (233)
Q Consensus 169 --~~~a~ll~a~~r~~dGk~YY~~Ey~v~~~~-----~~RH~la~vtv~~gkLYtl~~q~~~~~f~ 227 (233)
++.++|+++++++.+|++||+|||.++.++ +.||+|+++++++||||+|++|+++.+|.
T Consensus 84 ~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~ 149 (165)
T 2xb3_A 84 ESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWP 149 (165)
T ss_dssp TSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHH
T ss_pred CCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhH
Confidence 478999999999999999999999999887 89999999999999999999999999985
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=7.5e-37 Score=255.48 Aligned_cols=139 Identities=29% Similarity=0.493 Sum_probs=131.4
Q ss_pred cccCCceeeeeCCCCeEEecCCCceEeeec----CceeeeeccCCCCceEEEEEecCCC-CCccccCChHHHHHHHHHHh
Q 026757 90 ESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKF 164 (233)
Q Consensus 90 e~~~gf~~y~D~~dgYsf~yP~~W~e~~~~----G~d~~f~d~~~~~enVsVvv~P~~~-~si~dlGspeeva~~Ll~~~ 164 (233)
+.+.||++|.|+.|||+|.||++|++++++ |+|++|+|+++..+||+|+|+|+++ ++|+|||+|++|+++|++++
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~ 88 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV 88 (170)
Confidence 356799999999999999999999998887 9999999999999999999999987 99999999999999999999
Q ss_pred cCCC--CCceeEEEeeEeccCCeEEEEEEEEEeCC-CCcceEEEEEEEeCCeEEEEEEEecceeeeE
Q 026757 165 LAPP--TQKTKIIAASENDVDGKAYYAFEFTAQAP-NYIRHALGVVTVGNGMKLITTREFEVHHFSF 228 (233)
Q Consensus 165 ~~~~--~~~a~ll~a~~r~~dGk~YY~~Ey~v~~~-~~~RH~la~vtv~~gkLYtl~~q~~~~~f~~ 228 (233)
++++ ++.++||++++++.||++||+|||.++.+ ++.||+|++++|++||||+|++|+++.+|.-
T Consensus 89 ~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~ 155 (170)
T 2lnj_A 89 NDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDT 155 (170)
Confidence 8887 47899999999999999999999999998 7999999999999999999999999999963
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=96.48 E-value=0.11 Score=41.42 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=75.4
Q ss_pred ceeeeeCCCCeEEecCCCceEeeecCceeeeeccCCCC--ceEEEEEecCCCCCccccCChHHHHHHHHHHhcCCCCCce
Q 026757 95 FLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPL--ESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKT 172 (233)
Q Consensus 95 f~~y~D~~dgYsf~yP~~W~e~~~~G~d~~f~d~~~~~--enVsVvv~P~~~~si~dlGspeeva~~Ll~~~~~~~~~~a 172 (233)
+..| ..+.++|.+|.+|++.. .-+.+-....+. -||.|...+.. +=.+.++..++-+++..+. ...-
T Consensus 3 m~~y--~~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~-----~~~~l~~~~~~q~~~l~~~-l~~y 71 (148)
T 1tu1_A 3 MTLY--RLHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQ-----GDAPFADYVARQLENAEKQ-LPGF 71 (148)
T ss_dssp EEEE--ECSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHHHHHHHHH-STTC
T ss_pred CceE--EECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCC-----CCCCHHHHHHHHHHHHHhh-CcCc
Confidence 5567 48899999999999542 233332222212 34444444332 2135555665544322110 1234
Q ss_pred eEEEeeEeccCCeEEEEEEEEEeCCCCcceEEEEEEEeCCeEEEEEEEecce
Q 026757 173 KIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVH 224 (233)
Q Consensus 173 ~ll~a~~r~~dGk~YY~~Ey~v~~~~~~RH~la~vtv~~gkLYtl~~q~~~~ 224 (233)
+++.......+|.+--.+||.=...+..+|++-++.+..+++|+|+.+++..
T Consensus 72 ~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~ 123 (148)
T 1tu1_A 72 KLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPA 123 (148)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGG
T ss_pred EEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCC
Confidence 5555444456888888888888888889999999999977999999999764
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=93.77 E-value=2.2 Score=34.84 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=67.9
Q ss_pred CCeEEecCCCceEeeecCceeeee-ccCC--CCceEEEEEecCCCCCccccCChHHHHHHHHHHhcC-CCCCceeEEEee
Q 026757 103 DGYSFVYPFGWQEVIIEGQDKVFK-DVIE--PLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLA-PPTQKTKIIAAS 178 (233)
Q Consensus 103 dgYsf~yP~~W~e~~~~G~d~~f~-d~~~--~~enVsVvv~P~~~~si~dlGspeeva~~Ll~~~~~-~~~~~a~ll~a~ 178 (233)
-++++-.|.||+.....|.-.... +... -.-|+-|++.-... |+ . |.+.+=+.+..+ -+ .-++++-.
T Consensus 18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~----~~--~-e~~r~el~~~~~~lp--~~~~~~r~ 88 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT----GA--L-HNQRTELDQRATQLP--DYAERGRT 88 (161)
T ss_dssp CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT----TH--H-HHHHHHHHHHHTTST--TCEEEEEE
T ss_pred ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc----HH--H-HHHHHHHHHHHhhCC--CcEeeccc
Confidence 468999999999885555422222 2211 13677776653321 12 2 233333344332 22 23455545
Q ss_pred EeccCCeEEEEEEEEEeCCCCcceE--EEEEEE-eCCeEEEE--EEEecceee
Q 026757 179 ENDVDGKAYYAFEFTAQAPNYIRHA--LGVVTV-GNGMKLIT--TREFEVHHF 226 (233)
Q Consensus 179 ~r~~dGk~YY~~Ey~v~~~~~~RH~--la~vtv-~~gkLYtl--~~q~~~~~f 226 (233)
..+.+|.+-|..||.=..++.+.+. +..+.| .++..|.+ ++++...|+
T Consensus 89 ~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~ 141 (161)
T 3lyd_A 89 ETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQT 141 (161)
T ss_dssp EEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGH
T ss_pred ccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccc
Confidence 5589999999999997666666662 344444 47877777 888877664
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=71.22 E-value=5.3 Score=34.78 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=34.2
Q ss_pred eeeeeCCCCeEEecCCCceEeeecCce-eeeeccCCCCceEEEEEe
Q 026757 96 LSVTDKKDGYSFVYPFGWQEVIIEGQD-KVFKDVIEPLESVSVNLI 140 (233)
Q Consensus 96 ~~y~D~~dgYsf~yP~~W~e~~~~G~d-~~f~d~~~~~enVsVvv~ 140 (233)
.-|..|+.=|+..||.+|.|.+- |.+ -.|.||..=++|..+.--
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd-~E~sflFynp~~WtGNfRISay 49 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFED-GEGSFLFYNPDVWTGNFRISAF 49 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECC-CTTEEEEECSSSCCCEEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccC-CCCceeeeChhhcccceEEEec
Confidence 45778888899999999999763 444 458999888899776643
No 7
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=45.07 E-value=88 Score=25.17 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHhcCCCCCceeEEEeeEeccCCeEEEEEEEEEeCCCCcceEEEEEEEeCCeEEEEEEE
Q 026757 152 PPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTRE 220 (233)
Q Consensus 152 speeva~~Ll~~~~~~~~~~a~ll~a~~r~~dGk~YY~~Ey~v~~~~~~RH~la~vtv~~gkLYtl~~q 220 (233)
+++++....++++ || +.|.+..-...+|+..|.+|+. .++..|- .-+-..+|++......
T Consensus 33 s~e~A~~~a~~~~---pg--a~I~~iele~~~G~~vYEVe~~---~~g~e~e-v~IDA~tG~Vl~~~~e 92 (174)
T 4exr_A 33 PYTDAINIFKDKY---KD--ADIVDLSLERDLNKFVYTVEGV---DDNNEYK-MKIDANTKDVLEDKTE 92 (174)
T ss_dssp CHHHHHHHHHHHS---TT--CEEEEEEEEEETTEEEEEEEEE---CSSEEEE-EEEETTTCCEEEEEEE
T ss_pred CHHHHHHHHHHHC---CC--CEEEEEEEEEeCCEEEEEEEEE---ECCEEEE-EEEECCCCcEeccccc
Confidence 6777777766543 22 4566666555789988888875 1222222 2233345666655543
No 8
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=43.05 E-value=1.1e+02 Score=24.64 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=26.3
Q ss_pred ccCChHHHHHHHHHHhcCCCCCceeEEEeeEeccCCeEEEEEEEE
Q 026757 149 DFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFT 193 (233)
Q Consensus 149 dlGspeeva~~Ll~~~~~~~~~~a~ll~a~~r~~dGk~YY~~Ey~ 193 (233)
..-+++++....++++ +| .++++.-...+|+.+|.+|+.
T Consensus 112 ~~is~~~A~~~Al~~~---~G---~v~e~eLd~d~G~~vYevei~ 150 (174)
T 4exr_A 112 DIMTPQQAMEIALKEQ---NG---IVKEWSLDKDLDVTFYKIRID 150 (174)
T ss_dssp TCCCHHHHHHHHHHHS---CS---EEEEEEEEEETTEEEEEEEEE
T ss_pred CCcCHHHHHHHHHHhC---CC---eEEEEEEEEeCCEEEEEEEEE
Confidence 3446777776666554 23 466666445689999999986
No 9
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=35.02 E-value=42 Score=20.33 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=8.2
Q ss_pred cchhHHHHHHH
Q 026757 62 CGRRQMIAVGV 72 (233)
Q Consensus 62 ~~RR~~L~~~~ 72 (233)
+.||++|...+
T Consensus 3 lsRR~FLK~~a 13 (35)
T 2pq4_B 3 LSRRSFMKANA 13 (35)
T ss_dssp CCSHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 56999996543
No 10
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=27.66 E-value=65 Score=22.89 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=23.7
Q ss_pred cCCceeeeeCCCCeEEe-----cCCCceEeeecC
Q 026757 92 NKGFLSVTDKKDGYSFV-----YPFGWQEVIIEG 120 (233)
Q Consensus 92 ~~gf~~y~D~~dgYsf~-----yP~~W~e~~~~G 120 (233)
..-|...++.++-|++- +|.||..+-++|
T Consensus 13 ~~~f~VlvN~E~QySLWP~~~~vP~GW~~v~~~~ 46 (74)
T 2khr_A 13 NGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEA 46 (74)
T ss_dssp CSCEEEEEETTCSCEEEETTSCCCSSEEEEECSC
T ss_pred CCeEEEEEcCCCccccCcCcCCCCCCcccCCCCC
Confidence 35699999999999996 899999775544
No 11
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=26.99 E-value=87 Score=25.04 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCccccCChHHHHHHHHHHhcCCCCC----ceeEEEeeE-eccCCeEEEEEEEE
Q 026757 145 QDIRDFGPPQEVAETLIKKFLAPPTQ----KTKIIAASE-NDVDGKAYYAFEFT 193 (233)
Q Consensus 145 ~si~dlGspeeva~~Ll~~~~~~~~~----~a~ll~a~~-r~~dGk~YY~~Ey~ 193 (233)
-.|.-|| ...|+.+ ++.+.. |. +..| ...+ .+.+|+.||.|.+.
T Consensus 88 ~~V~vfG--g~lAE~i-~~ylkk-G~rVlVeGRL-rmn~~~d~~gkk~Y~~p~i 136 (148)
T 3stb_C 88 HTVRVFD--SDYSSRV-KEQLRD-GEWFLVTGRL-RMVPQYDGSMRKYYHYPVI 136 (148)
T ss_dssp EEEEECS--HHHHHHH-HHHCCT-TCEEEEEEEE-EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEC--ChHHHHH-HHHhcC-CCEEEEEEEE-EcceeECCCCCEEeeccEE
Confidence 3466677 5666744 444432 22 2222 2333 36899999999997
No 12
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=26.86 E-value=70 Score=22.70 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=23.7
Q ss_pred cCCceeeeeCCCCeEEe-----cCCCceEeeecC
Q 026757 92 NKGFLSVTDKKDGYSFV-----YPFGWQEVIIEG 120 (233)
Q Consensus 92 ~~gf~~y~D~~dgYsf~-----yP~~W~e~~~~G 120 (233)
..-|...++.++-|++- +|.||..+-.+|
T Consensus 11 ~~~f~VlvN~E~QySLWP~~~~vP~GW~~v~~~~ 44 (74)
T 2pst_X 11 DIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSG 44 (74)
T ss_dssp CSCEEEEEETTCCEEEEETTSCCCTTEEEEEEEE
T ss_pred CCeEEEEEcCCCccccCcCCCCCCCCcccCCCCC
Confidence 35699999999999995 899999775543
No 13
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=26.45 E-value=1e+02 Score=22.85 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=28.8
Q ss_pred ccCCeEEEEEEEE---------EeCCCCcceEEEEEEEeCCeEEEEEEEecce
Q 026757 181 DVDGKAYYAFEFT---------AQAPNYIRHALGVVTVGNGMKLITTREFEVH 224 (233)
Q Consensus 181 ~~dGk~YY~~Ey~---------v~~~~~~RH~la~vtv~~gkLYtl~~q~~~~ 224 (233)
..||+.|+.|.+. ++.+.+ . ...+-|.||+.+...+.++++
T Consensus 13 ~vdGk~~~~i~L~~~~~~~~~~i~~~~G-~--~n~ieI~dg~vrv~es~CPdk 62 (101)
T 3ld7_A 13 SQNGKVIREIPLTGHKGNEQFTIKGKGA-Q--YNLMEVDGERIRIKEDNSPDQ 62 (101)
T ss_dssp EETTEEEEEEECTTCBSEEEEEEECSTT-C--EEEEEEETTEEEEEEECCSSC
T ss_pred EECCEEEEEEECCCCCCCEEEEEEcCCC-C--EEEEEEECCEEEEEECCCCCc
Confidence 4688888888664 232222 1 246788999999998888876
No 14
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=25.84 E-value=69 Score=23.85 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=23.6
Q ss_pred cCCceeeeeCCCCeEEe-----cCCCceEeeecC
Q 026757 92 NKGFLSVTDKKDGYSFV-----YPFGWQEVIIEG 120 (233)
Q Consensus 92 ~~gf~~y~D~~dgYsf~-----yP~~W~e~~~~G 120 (233)
..-|...++.++-|++- +|.||..+-++|
T Consensus 24 ~~~f~VLvN~E~QYSLWP~~~~VPaGW~~v~~~~ 57 (95)
T 2lpd_A 24 DELYFVVRNNEGQYSVWMDGRSLPAGWETVGEPA 57 (95)
T ss_dssp CCCEEEEECSSCSCEEEETTSCCCTTCEEEEEEE
T ss_pred CCcEEEEEcCCCccccCcCCCCCCCCcccCCCCC
Confidence 35699999999999985 899999775543
No 15
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=20.62 E-value=47 Score=21.95 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=12.1
Q ss_pred EeccCCeEEEEEEEEE
Q 026757 179 ENDVDGKAYYAFEFTA 194 (233)
Q Consensus 179 ~r~~dGk~YY~~Ey~v 194 (233)
-++.||+.||.|.--+
T Consensus 16 l~dddg~q~~e~h~gl 31 (56)
T 2le2_A 16 LQDDDGKQYYEYHKGL 31 (56)
T ss_dssp EECTTSCEEEEEEEEE
T ss_pred EEcCCCceeeeeecCc
Confidence 3688999999876543
No 16
>2q7a_A Cell surface heme-binding protein; beta sandwich; HET: HEM; 2.10A {Streptococcus pyogenes}
Probab=20.13 E-value=3.4e+02 Score=21.72 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=35.4
Q ss_pred EEEEecC--C--CCCccccCCh--HHHHHHHHHHhcCCCCCceeEEEeeEeccCCeEEEEEEEEE
Q 026757 136 SVNLIPT--G--KQDIRDFGPP--QEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTA 194 (233)
Q Consensus 136 sVvv~P~--~--~~si~dlGsp--eeva~~Ll~~~~~~~~~~a~ll~a~~r~~dGk~YY~~Ey~v 194 (233)
+|.|+|- + -..|||-|.- -++++..++.++. ...||+. ..+|+.|.+++|.+
T Consensus 8 t~~i~~~Y~~PvTg~ieD~G~~~~~aiGqgMve~~v~----~~~lLE~---~d~Gk~YLTvr~~L 65 (152)
T 2q7a_A 8 GSIIQRNYRHPISGQIEDSGGEHSFDIGQGMVEGTVY----SDAMLEV---SDAGKIVLTFRMSL 65 (152)
T ss_dssp EEEEEEESSCTTTCCCCSTTCGGGHHHHHHHHHHHBC----SEEEEEE---ETTSCEEEEEEESC
T ss_pred EEEecccccCCCccceecCCCcccchhhhhHHHhhhc----cceeEEE---cCCCcEEEEEEEEh
Confidence 4556552 2 2678999963 3788888877763 3445554 45799999999874
Done!