Query 026757
Match_columns 233
No_of_seqs 169 out of 303
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 21:25:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026757.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026757hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v2ba_ d.107.1.2 (A:) Oxygen- 100.0 4.7E-34 3.4E-38 236.6 14.6 132 94-227 2-154 (171)
2 d1tu1a_ d.107.1.3 (A:) Hypothe 97.7 0.00044 3.2E-08 53.0 13.2 120 95-226 3-125 (144)
3 d1ywia1 b.72.1.1 (A:15-42) Hun 48.7 3.9 0.00028 22.6 1.6 9 181-189 8-16 (28)
4 d1o6wa1 b.72.1.1 (A:1-29) Spli 47.9 4 0.00029 22.7 1.5 10 180-189 8-17 (29)
5 d1o6wa2 b.72.1.1 (A:30-75) Spl 32.0 9.3 0.00068 23.3 1.5 10 181-190 21-30 (46)
6 d2pstx1 d.100.2.1 (X:8-68) Unc 31.4 26 0.0019 22.4 3.8 28 93-120 3-35 (61)
7 d2rm0w1 b.72.1.1 (W:1-37) Form 28.2 12 0.00089 21.6 1.5 10 181-190 13-22 (37)
8 d1tvfa1 b.105.1.2 (A:316-383) 27.8 15 0.0011 24.1 2.1 41 173-216 4-48 (68)
9 d1oh4a_ b.18.1.18 (A:) Beta-ma 22.4 1.1E+02 0.0077 23.3 6.6 44 178-221 118-167 (174)
10 d1p5dx4 d.129.2.1 (X:368-463) 19.3 39 0.0028 22.8 3.0 27 99-125 36-62 (96)
No 1
>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=100.00 E-value=4.7e-34 Score=236.58 Aligned_cols=132 Identities=23% Similarity=0.409 Sum_probs=113.5
Q ss_pred CceeeeeCCCCeEEecCCCceEee---ecCceeeeeccCCCCceEEEEEecCCCCCccccCChHHHHHHHH----HHhcC
Q 026757 94 GFLSVTDKKDGYSFVYPFGWQEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLI----KKFLA 166 (233)
Q Consensus 94 gf~~y~D~~dgYsf~yP~~W~e~~---~~G~d~~f~d~~~~~enVsVvv~P~~~~si~dlGspeeva~~Ll----~~~~~ 166 (233)
+|++|.| |||+|+||++|+++. ..|+|++|+|+++..+||+|+|.|+++++|++||+|+++++++. ++++.
T Consensus 2 ~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~ 79 (171)
T d1v2ba_ 2 DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYS 79 (171)
T ss_dssp CEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC------
T ss_pred CcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhc
Confidence 6999986 899999999998654 45899999999999999999999999999999999999998865 33333
Q ss_pred CC-----------CCceeEEEeeEeccCCeEEEEEEEEEeCC---CCcceEEEEEEEeCCeEEEEEEEecceeee
Q 026757 167 PP-----------TQKTKIIAASENDVDGKAYYAFEFTAQAP---NYIRHALGVVTVGNGMKLITTREFEVHHFS 227 (233)
Q Consensus 167 ~~-----------~~~a~ll~a~~r~~dGk~YY~~Ey~v~~~---~~~RH~la~vtv~~gkLYtl~~q~~~~~f~ 227 (233)
++ ++.++|+++++++.||++||+|||.++.+ ++.||+|++++|++||||||++|+++.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grLYtl~~~~pe~~w~ 154 (171)
T d1v2ba_ 80 GKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWF 154 (171)
T ss_dssp ------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCS
T ss_pred ccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeCCEEEEEEEecCHHHhh
Confidence 21 36789999999999999999999998865 478999999999999999999999999983
No 2
>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=97.69 E-value=0.00044 Score=53.04 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=81.8
Q ss_pred ceeeeeCCCCeEEecCCCceEeeecCceeeeeccC-CCC--ceEEEEEecCCCCCccccCChHHHHHHHHHHhcCCCCCc
Q 026757 95 FLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVI-EPL--ESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQK 171 (233)
Q Consensus 95 f~~y~D~~dgYsf~yP~~W~e~~~~G~d~~f~d~~-~~~--enVsVvv~P~~~~si~dlGspeeva~~Ll~~~~~~~~~~ 171 (233)
+..|. .+.=+|.+|.+|++..+ . .|..+. +.. -||.|+..+.. +=.+++++.++.++..-+. ...
T Consensus 3 ~~~Y~--~~Egs~~lP~gw~d~t~---n-i~~~~~~~~~~~~~lvIsr~~l~-----~~~~l~~~~~~~~~~l~~~-l~~ 70 (144)
T d1tu1a_ 3 MTLYR--LHEADLEIPDAWQDQSI---N-IFKLPASGPAREASFVISRDASQ-----GDAPFADYVARQLENAEKQ-LPG 70 (144)
T ss_dssp EEEEE--CSSEEEEEETTSEECCB---E-EEEECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHHHHHHHHH-STT
T ss_pred CceeE--EcCEEEeCCCCceeCcc---e-EEEecCCCCCcceEEEEEeecCC-----CCCCHHHHHHHHHHHHHhh-CCC
Confidence 44553 44458999999986532 2 233222 222 34555555532 2346677777755433211 124
Q ss_pred eeEEEeeEeccCCeEEEEEEEEEeCCCCcceEEEEEEEeCCeEEEEEEEecceee
Q 026757 172 TKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHF 226 (233)
Q Consensus 172 a~ll~a~~r~~dGk~YY~~Ey~v~~~~~~RH~la~vtv~~gkLYtl~~q~~~~~f 226 (233)
-++++..+...+|.+-+.+||.-...+...|+.-++.+.++++|+|+.++....|
T Consensus 71 ~~~~~~~~~~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~ 125 (144)
T d1tu1a_ 71 FKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADL 125 (144)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGH
T ss_pred cEEEeeEecccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCC
Confidence 5788877778899999999999988888999999999999999999999987765
No 3
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.67 E-value=3.9 Score=22.56 Aligned_cols=9 Identities=44% Similarity=0.988 Sum_probs=7.1
Q ss_pred ccCCeEEEE
Q 026757 181 DVDGKAYYA 189 (233)
Q Consensus 181 ~~dGk~YY~ 189 (233)
..||++||+
T Consensus 8 ~~~G~~YYy 16 (28)
T d1ywia1 8 SPDGRTYYY 16 (28)
T ss_dssp ETTTEEEEE
T ss_pred CCCCCEEEe
Confidence 568999886
No 4
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.86 E-value=4 Score=22.73 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=7.9
Q ss_pred eccCCeEEEE
Q 026757 180 NDVDGKAYYA 189 (233)
Q Consensus 180 r~~dGk~YY~ 189 (233)
+..||++||+
T Consensus 8 ~~~~G~~YYy 17 (29)
T d1o6wa1 8 KDASGRIYYY 17 (29)
T ss_dssp ECTTCCEEEE
T ss_pred ECCCCCEEEe
Confidence 4578999886
No 5
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.03 E-value=9.3 Score=23.29 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=7.8
Q ss_pred ccCCeEEEEE
Q 026757 181 DVDGKAYYAF 190 (233)
Q Consensus 181 ~~dGk~YY~~ 190 (233)
+.||++||+=
T Consensus 21 ~~~Gr~YYyN 30 (46)
T d1o6wa2 21 TADGKVYYYN 30 (46)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 5689999963
No 6
>d2pstx1 d.100.2.1 (X:8-68) Uncharacterized protein PA2412 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=31.36 E-value=26 Score=22.42 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=23.5
Q ss_pred CCceeeeeCCCCeEEe-----cCCCceEeeecC
Q 026757 93 KGFLSVTDKKDGYSFV-----YPFGWQEVIIEG 120 (233)
Q Consensus 93 ~gf~~y~D~~dgYsf~-----yP~~W~e~~~~G 120 (233)
.-|...++.+.-|++- +|.||..+-++|
T Consensus 3 ~~f~VlvN~E~QySlWP~~~~vP~GW~~v~~~g 35 (61)
T d2pstx1 3 IQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSG 35 (61)
T ss_dssp SCEEEEEETTCCEEEEETTSCCCTTEEEEEEEE
T ss_pred ceEEEEEcCCCccccCcCCCCCCCChhhcCCCC
Confidence 4588899999999987 899999886654
No 7
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}
Probab=28.17 E-value=12 Score=21.58 Aligned_cols=10 Identities=50% Similarity=0.850 Sum_probs=7.8
Q ss_pred ccCCeEEEEE
Q 026757 181 DVDGKAYYAF 190 (233)
Q Consensus 181 ~~dGk~YY~~ 190 (233)
..+|++||+=
T Consensus 13 ~~~Gr~YY~N 22 (37)
T d2rm0w1 13 TADGKTYYYN 22 (37)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 5789998863
No 8
>d1tvfa1 b.105.1.2 (A:316-383) Pencillin binding protein 4 (PbpD), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=27.79 E-value=15 Score=24.10 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=24.6
Q ss_pred eEEEeeEeccCCeEEEE----EEEEEeCCCCcceEEEEEEEeCCeEEE
Q 026757 173 KIIAASENDVDGKAYYA----FEFTAQAPNYIRHALGVVTVGNGMKLI 216 (233)
Q Consensus 173 ~ll~a~~r~~dGk~YY~----~Ey~v~~~~~~RH~la~vtv~~gkLYt 216 (233)
+||+-.+.++||++||- |.. +.-.....+. -+.+.+|+++.
T Consensus 4 KvLsKG~h~IdGkky~v~kDlYdv-VpK~~~k~~~--k~~v~dgkv~v 48 (68)
T d1tvfa1 4 KILSKGEQRINGKKYYVENDLYDV-LPSDFSKKDY--KLVVEDGKVHA 48 (68)
T ss_dssp EEECSEEEEETTEEEEECSCEEEE-EETTCCGGGC--EEEEETTEEEE
T ss_pred eecccCceEcCCeEEEeccchhhh-ccCCCCccCc--eEEEeCCeEEE
Confidence 68888889999999873 333 2222111221 24567788775
No 9
>d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.41 E-value=1.1e+02 Score=23.25 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=32.4
Q ss_pred eEeccCCeEEEEEEEEEeC-CCCcceEEEEEEEeC-----CeEEEEEEEe
Q 026757 178 SENDVDGKAYYAFEFTAQA-PNYIRHALGVVTVGN-----GMKLITTREF 221 (233)
Q Consensus 178 ~~r~~dGk~YY~~Ey~v~~-~~~~RH~la~vtv~~-----gkLYtl~~q~ 221 (233)
+.-.++|+.||.++..++. +....+.|....|.+ |+.|+=|+..
T Consensus 118 e~v~~~gd~y~k~~V~id~d~~t~l~dl~l~ivG~~sdf~G~iYIDNVrl 167 (174)
T d1oh4a_ 118 EIITFGGKEYRRFHVRIEFDRTAGVKELHIGVVGDHLRYDGPIFIDNVRL 167 (174)
T ss_dssp EEEEETTEEEEEEEEEEECCCCTTCCEEEEEEEEESCCEEEEEEEEEEEE
T ss_pred hheeecCCceEEEEEEEecCCCCCcceEEEEEeCccccccCCEEEEEEEE
Confidence 3346789999999999886 335667777766664 8888877754
No 10
>d1p5dx4 d.129.2.1 (X:368-463) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.30 E-value=39 Score=22.75 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=21.9
Q ss_pred eeCCCCeEEecCCCceEeeecCceeee
Q 026757 99 TDKKDGYSFVYPFGWQEVIIEGQDKVF 125 (233)
Q Consensus 99 ~D~~dgYsf~yP~~W~e~~~~G~d~~f 125 (233)
.+..||..+.++.||.-++.+|.+-.+
T Consensus 36 i~~iDGvrv~~~dgW~liR~SnTEP~l 62 (96)
T d1p5dx4 36 ITTLDGVRVDYPKGWGLVRASNTTPVL 62 (96)
T ss_dssp EECSSSEEEEETTEEEEEEECSSSSEE
T ss_pred eeeecceEEEecccEEEEEeCCCCCEE
Confidence 357899999999999998888865443
Done!