BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026758
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis
thaliana GN=At2g21870 PE=1 SV=1
Length = 240
Score = 333 bits (853), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 168/240 (70%), Positives = 196/240 (81%), Gaps = 7/240 (2%)
Query: 1 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
MA+ASR S+SKQL VILQ+QHAI VR FA EAA KGDEMLK +F D+K KF+
Sbjct: 1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQA 60
Query: 61 ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T IPDAR Y
Sbjct: 61 AVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAY 120
Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAE-------L 173
LL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AE L
Sbjct: 121 LLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKL 180
Query: 174 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 233
GIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct: 181 GIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240
>sp|P80088|ATP7_SPIOL ATP synthase 28 kDa subunit, mitochondrial (Fragment) OS=Spinacia
oleracea PE=1 SV=1
Length = 32
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 37 APQALKGDEMLKNIFLDVKKKFETA 61
AP+ LKG+EMLK IFL+VKKKFETA
Sbjct: 8 APKGLKGNEMLKGIFLEVKKKFETA 32
>sp|P80496|ATP7_SOLTU ATP synthase 27 kDa subunit, mitochondrial (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 33
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 36 AAPQALKGDEMLKNIFLDVKKKFETALGV 64
AAP LKGD++LK+IF +VK K ETA+GV
Sbjct: 5 AAPTTLKGDQVLKDIFYEVKNKLETAIGV 33
>sp|Q8RWN9|OPD22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of
pyruvate dehydrogenase complex, mitochondrial
OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2
Length = 539
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 4 ASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLK 48
ASR+ + SK+L +L+R HA++VR F+N P + +++ K
Sbjct: 2 ASRIINHSKKLKHVSALLRRDHAVAVRCFSNSTHPSLVGREDIFK 46
>sp|Q5M729|OPD23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 3 of
pyruvate dehydrogenase complex, mitochondrial
OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1
Length = 539
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 14/74 (18%)
Query: 1 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEA-APQALKGDEMLKNIFLDVKKKFE 59
MA+ASR+ + SK+L +L+R++A ++R+++N AP L+ + F
Sbjct: 1 MAYASRIINHSKKLKDVSTLLRRENAATIRYYSNTNRAP-------------LNREDTFN 47
Query: 60 TALGVLRKEKITIA 73
+ LG E+I+I
Sbjct: 48 SRLGYPPLERISIC 61
>sp|A8WWH5|POP1_CAEBR Protein pop-1 OS=Caenorhabditis briggsae GN=pop-1 PE=3 SV=2
Length = 439
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 27/94 (28%)
Query: 124 LKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPL-----------------MRNDKKGM 166
+ + ERRG HG + K E IKKPL + ND+K
Sbjct: 179 MPQHNERRG----HGGGKV------KKEDHIKKPLNAFMWYMKENRPKLLEEVGNDQKQS 228
Query: 167 ALLTAELGIRKEDLPKYEEQLELKIAKAQLEELK 200
A L ELG R DLPK E+Q ++AK E K
Sbjct: 229 AELNKELGKRWHDLPKEEQQKYFEMAKKDRESHK 262
>sp|P39453|TORS_ECOLI Sensor protein TorS OS=Escherichia coli (strain K12) GN=torS PE=1
SV=4
Length = 914
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 34 NEAAPQALKGDEMLKNIFLD--------VKKKFETALGVLRKEKITIAPEDPAAVSQYAN 85
NE AL+ +M+ N+ L+ ++K+ A+ +L++ +I I EDP +Q A
Sbjct: 204 NELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI--EDPGVRAQVAT 261
Query: 86 VMKTVREKADLFSESQR 102
+ TV + +DL + Q+
Sbjct: 262 TLTTVSQYSDLLALYQQ 278
>sp|P58356|TORS_ECO57 Sensor protein TorS OS=Escherichia coli O157:H7 GN=torS PE=3 SV=1
Length = 914
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 34 NEAAPQALKGDEMLKNIFLD--------VKKKFETALGVLRKEKITIAPEDPAAVSQYAN 85
NE AL+ +M+ N+ L+ ++K+ A+ +L++ +I I EDP +Q A
Sbjct: 204 NELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI--EDPGVRAQVAT 261
Query: 86 VMKTVREKAD---LFSESQRIAYTIET 109
+ TV + +D LF + I+ ++T
Sbjct: 262 TLTTVSQYSDLLALFQQDSEISNHLQT 288
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 64 VLRKEKITIAPEDPAAVSQYANVMKTVREKAD-----LFSESQRI---AYTIETRTAGIP 115
+L++ + T+ + A+ QY +TV K + + E++++ T E +
Sbjct: 2277 LLKEAEETLMTLEAASADQYPEKAQTVPGKLEEIQKKIQEETEKLDKQKETFEAQKKRAE 2336
Query: 116 DARTYLLTLKEI-RERRGLIDEHGAEAMMMDALEKVEK---EIKKPLMRND--KKGMALL 169
+ YL + +++ +E + D+ A M+ L KVE I L R + K L
Sbjct: 2337 ELAAYLNSAQQLLKESKSKADKSNNIAKMLQ-LTKVENLVAAITDDLERVEAAKGEFQKL 2395
Query: 170 TAELGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDV 229
+G E+L E E+ A L E + D EA+E KKR +DE+ V+++ ++
Sbjct: 2396 NVAIGNITENLKDKRE--EMTHAVTTLNETRNDVAEALEAAKKRVR-RDEKSVDMQLVNA 2452
Query: 230 R 230
+
Sbjct: 2453 K 2453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,707,777
Number of Sequences: 539616
Number of extensions: 3002484
Number of successful extensions: 18616
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 404
Number of HSP's that attempted gapping in prelim test: 17796
Number of HSP's gapped (non-prelim): 1100
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)