Query 026758
Match_columns 233
No_of_seqs 26 out of 28
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 21:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o39_A Periplasmic protein rel 57.3 22 0.00074 27.5 5.7 35 71-105 53-99 (108)
2 2fup_A Hypothetical protein PA 46.5 60 0.002 24.7 6.6 63 47-109 8-84 (157)
3 3opc_A Uncharacterized protein 39.0 83 0.0028 24.3 6.5 75 45-123 7-96 (154)
4 2k48_A Nucleoprotein; viral pr 37.0 32 0.0011 27.3 3.7 70 137-210 27-105 (107)
5 1v54_E Cytochrome C oxidase po 35.0 15 0.00053 29.1 1.6 45 56-101 59-103 (109)
6 3l4a_A Odorant binding protein 34.4 67 0.0023 24.9 5.2 67 84-158 5-71 (141)
7 3gff_A IROE-like serine hydrol 34.1 2E+02 0.0069 24.8 8.8 72 52-127 253-327 (331)
8 3iq1_A DPS family protein; csg 32.2 1.6E+02 0.0056 22.8 7.2 99 44-154 53-151 (159)
9 2y69_E Cytochrome C oxidase su 30.4 20 0.00068 30.0 1.6 46 87-133 95-141 (152)
10 2ca5_A MXIH; transport protein 29.9 58 0.002 24.8 4.0 29 55-88 27-55 (85)
11 3r8n_J 30S ribosomal protein S 28.2 45 0.0015 24.9 3.1 31 67-97 1-31 (98)
12 4eve_A Neutrophil-activating p 25.5 2.5E+02 0.0085 22.2 7.6 99 44-154 57-156 (164)
13 3kwo_A Putative bacterioferrit 25.4 2.1E+02 0.0072 22.0 6.7 99 44-154 40-139 (152)
14 4hde_A SCO1/SENC family lipopr 25.1 42 0.0014 25.8 2.6 37 49-85 53-91 (170)
15 3ogn_A Odorant-binding protein 24.8 1.8E+02 0.0063 21.3 6.0 59 77-140 12-70 (124)
16 2o8s_A AGR_C_984P; all alpha-h 21.4 76 0.0026 29.1 3.8 72 98-175 76-159 (323)
17 1o9r_A Agrobacterium tumefacie 20.6 3E+02 0.01 21.3 7.3 99 44-154 52-151 (162)
18 3ngx_A Bifunctional protein fo 20.6 1.6E+02 0.0054 26.1 5.7 70 41-113 4-82 (276)
No 1
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=57.34 E-value=22 Score=27.50 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=26.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHH------------hcCCCChHHHHHH
Q 026758 71 TIAPEDPAAVSQYANVMKTVRE------------KADLFSESQRIAY 105 (233)
Q Consensus 71 ~ldp~DpaAVk~YA~~~~~vr~------------k~gl~s~~e~I~~ 105 (233)
+-++-|++||..+++.|..+.. =..|.+|+|+-..
T Consensus 53 ~ad~FDEaaar~l~~~~~~~~~e~~v~~~r~~~qmy~lLTPEQk~q~ 99 (108)
T 3o39_A 53 ASDTFDKAKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQF 99 (108)
T ss_dssp SSSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566899999999997655443 4688999998653
No 2
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=46.46 E-value=60 Score=24.70 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhchhccccccCCCCHHHH--------------HHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 026758 47 LKNIFLDVKKKFETALGVLRKEKITIAPEDPAAV--------------SQYANVMKTVREKADLFSESQRIAYTIET 109 (233)
Q Consensus 47 lK~iF~evqkkF~~~l~~lkk~kI~ldp~DpaAV--------------k~YA~~~~~vr~k~gl~s~~e~I~~tie~ 109 (233)
|..++.+...-++.+++.+..+.--|--+|..++ .+++.....+-..+|+|++...+...+..
T Consensus 8 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~ 84 (157)
T 2fup_A 8 LLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE 84 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc
Confidence 5677788888899999998888877777787644 34555556666688999888877665544
No 3
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=38.98 E-value=83 Score=24.30 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchhccccccCC-CCHHHHH--------------HHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 026758 45 EMLKNIFLDVKKKFETALGVLRKEKITIAP-EDPAAVS--------------QYANVMKTVREKADLFSESQRIAYTIET 109 (233)
Q Consensus 45 d~lK~iF~evqkkF~~~l~~lkk~kI~ldp-~DpaAVk--------------~YA~~~~~vr~k~gl~s~~e~I~~tie~ 109 (233)
+-|..+..+...-++.++++|..+.--|.- +|+.++. +++.....+-..+|+|++..-+...+.
T Consensus 7 ~~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~- 85 (154)
T 3opc_A 7 AALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAA- 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH-
Confidence 457788888999999999999888877766 7777444 444445556668999998887776654
Q ss_pred hhcCCCcHHHHHHH
Q 026758 110 RTAGIPDARTYLLT 123 (233)
Q Consensus 110 ~~~~~~dvR~yL~~ 123 (233)
..|.++.-...
T Consensus 86 ---~~~~l~~~w~~ 96 (154)
T 3opc_A 86 ---AHPELGPLWQA 96 (154)
T ss_dssp ---HCGGGHHHHHH
T ss_pred ---hChHHHHHHHH
Confidence 23454444433
No 4
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.05 E-value=32 Score=27.28 Aligned_cols=70 Identities=19% Similarity=0.368 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHHHhhCC---ccccccHhhHHHHHHH---hCCCCCChhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026758 137 HGAEAMMMDALEKVEKEIKK---PLMRNDKKGMALLTAE---LGIRKEDLPK---YEEQLELKIAKAQLEELKKDALEAM 207 (233)
Q Consensus 137 ~g~~a~mm~ALdkvEK~igk---pL~rsDkkGM~~L~ae---lGI~keDl~K---~eee~ele~aK~qL~elK~~a~e~m 207 (233)
-|...+||+-|.++|+++.. -|+.+ +++|..+ .+-+|+|.-| -.-+.+...+++-|-+||..--++.
T Consensus 27 ~~~~~~tM~~ieeLQ~Ei~~~E~QL~iA----rQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 27 QGIDPFTMSTLQELQENITAHEQQLVTA----RQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999988752 23332 3344333 8999999888 4567788899999999999888877
Q ss_pred HHH
Q 026758 208 ETQ 210 (233)
Q Consensus 208 ~~~ 210 (233)
.+.
T Consensus 103 a~g 105 (107)
T 2k48_A 103 AAQ 105 (107)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 5
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=34.98 E-value=15 Score=29.14 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=28.6
Q ss_pred HHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHH
Q 026758 56 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQ 101 (233)
Q Consensus 56 kkF~~~l~~lkk~kI~ldp~DpaAVk~YA~~~~~vr~k~gl~s~~e 101 (233)
+.|-+++-.|-..|.-.. +.......|-+.++-+++++||+++++
T Consensus 59 ND~alAVR~lE~iK~K~~-~~~~iY~~~lqElkPtl~ELGI~t~Ee 103 (109)
T 1v54_E 59 NDFASAVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELGISTPEE 103 (109)
T ss_dssp TCHHHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHHTCCCTTT
T ss_pred hhHHHHHHHHHHHHHHhc-CchhhHHHHHHHHhhHHHHhCCCCHHH
Confidence 345556666655555553 223356677777777888888887765
No 6
>3l4a_A Odorant binding protein (AGAP010409-PA); all alpha helix, transport protein; 1.50A {Anopheles gambiae} PDB: 3l47_A 3l4l_A 3l5g_A 3pji_A 3qme_A
Probab=34.36 E-value=67 Score=24.91 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhCCcc
Q 026758 84 ANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPL 158 (233)
Q Consensus 84 A~~~~~vr~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~g~~a~mm~ALdkvEK~igkpL 158 (233)
.+++..+.+..++.|+++.|.....+.+-+-+.++=|+.=+.. ++|+-|+.|..- +|.+-.++|.|.
T Consensus 5 ~~i~~eC~~~~~ivs~~e~l~~~~~g~fpdD~~~kCyirCv~~---~~g~~dd~gg~~-----~d~~~~q~~~p~ 71 (141)
T 3l4a_A 5 ESVIESCSNAVQGAANDELKVHYRANEFPDDPVTHCFVRCIGL---ELNLYDDKYGVD-----LQANWENLGNSD 71 (141)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHTTCCCSSHHHHHHHHHHHH---HTTSEETTTEEB-----HHHHHHHTTCCS
T ss_pred hHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCccchHHHhHhh---hcccEeCCCCcc-----HHHHHHHHCCCc
Confidence 4567888999999999999999888888788899999999998 999977665432 455566777773
No 7
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}
Probab=34.07 E-value=2e+02 Score=24.79 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhchhccccccCC--CCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhh-cCCCcHHHHHHHHHHH
Q 026758 52 LDVKKKFETALGVLRKEKITIAP--EDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRT-AGIPDARTYLLTLKEI 127 (233)
Q Consensus 52 ~evqkkF~~~l~~lkk~kI~ldp--~DpaAVk~YA~~~~~vr~k~gl~s~~e~I~~tie~~~-~~~~dvR~yL~~~~Ei 127 (233)
..+.+-|+.++...+ +++.| .+++++..|-+.+.+ +.....+++++-+...|.+.. +...+.|++...+.++
T Consensus 253 ~~~~~~l~~lf~~~~---~~~~~~~~~~~~l~~~y~~l~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (331)
T 3gff_A 253 IGLYDGIRHLFKDFA---IDIYSDSFSKQQVIDQYGVLSE-RFGHKVTPSQQYLEQLIQYSDRQQLTERKQMLEGLRQH 327 (331)
T ss_dssp HHHHHHHHHHHGGGC---CCCC---CCHHHHHHHHHHHHH-HHTSCCCCCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC---CCCCcccccHHHHHHHHHHHHH-HhCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 334555566665444 23333 345556666666655 777778899998888998888 8999999998887763
No 8
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=32.18 E-value=1.6e+02 Score=22.82 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHH
Q 026758 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLT 123 (233)
Q Consensus 44 dd~lK~iF~evqkkF~~~l~~lkk~kI~ldp~DpaAVk~YA~~~~~vr~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~ 123 (233)
-.++...+.+....+..+-+-++...- ..|+.+..+.+++ .+.+.-|-+++.+-|...++....-+...|.-...
T Consensus 53 H~~~ee~~~~~~~~~D~lAERI~~LGg-~P~~t~~~~~~~s----~i~e~~~~~~~~eml~~ll~~~~~~i~~~r~~i~~ 127 (159)
T 3iq1_A 53 HAKFEEIYTDLQLKIDELAERILTLSA-RPMHSFSGYLKAA----QIKEHTDSIDGRSSMQGLVDGFSILLHQQRDILEL 127 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCSHHHHHHHC----SSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHC----CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554442221 1124444444433 12322366778888888877766555555555544
Q ss_pred HHHHHHHcCCcchhhhHHHHHHHHHHHHHhh
Q 026758 124 LKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (233)
Q Consensus 124 ~~EiR~~~Gl~D~~g~~a~mm~ALdkvEK~i 154 (233)
+.+ ..+.++..+|-+-+...||.+
T Consensus 128 ae~-------~~D~~T~dll~~~l~~~Ek~~ 151 (159)
T 3iq1_A 128 AGE-------TGDEGTSALMSDYIREQEKLV 151 (159)
T ss_dssp HHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred HhH-------cCCHHHHHHHHHHHHHHHHHH
Confidence 444 346788888888888888864
No 9
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=30.38 E-value=20 Score=29.98 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHHcCC
Q 026758 87 MKTVREKADLFSESQRIAYTIETRTAGIPD-ARTYLLTLKEIRERRGL 133 (233)
Q Consensus 87 ~~~vr~k~gl~s~~e~I~~tie~~~~~~~d-vR~yL~~~~EiR~~~Gl 133 (233)
++++|+= +=++...||.+.|..+..+... --.||..+.-.+..+|+
T Consensus 95 LrAcRRv-NDfalAVR~lE~vK~K~~~~~~iY~y~lqElkPtl~ELGI 141 (152)
T 2y69_E 95 LRACRRL-NDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGI 141 (152)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhHHHHhCC
Confidence 3445443 3334456667777666644454 34556666666777777
No 10
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=29.94 E-value=58 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=20.3
Q ss_pred HHHHHHHHhchhccccccCCCCHHHHHHHHHHHH
Q 026758 55 KKKFETALGVLRKEKITIAPEDPAAVSQYANVMK 88 (233)
Q Consensus 55 qkkF~~~l~~lkk~kI~ldp~DpaAVk~YA~~~~ 88 (233)
.+.-..+++.|+ -+|+||+++..|-.++-
T Consensus 27 ~~~v~~Ai~~L~-----~~PsnPa~LAeyQ~kl~ 55 (85)
T 2ca5_A 27 QGELTLALDKLA-----KNPSNPQLLAEYQSKLS 55 (85)
T ss_dssp HHHHHHHHHHHH-----HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----cCCCCHHHHHHHHHHHH
Confidence 333445666665 38999999999987753
No 11
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=28.21 E-value=45 Score=24.86 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=27.9
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHHhcCCC
Q 026758 67 KEKITIAPEDPAAVSQYANVMKTVREKADLF 97 (233)
Q Consensus 67 k~kI~ldp~DpaAVk~YA~~~~~vr~k~gl~ 97 (233)
|++|+|...|.+.+..|++.+..+.+..|+.
T Consensus 1 ~irI~L~s~d~~~Ld~~~~~i~~~ak~~g~~ 31 (98)
T 3r8n_J 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQ 31 (98)
T ss_dssp CBCCEEEBSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHhCCe
Confidence 4688999999999999999999999988875
No 12
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=25.54 E-value=2.5e+02 Score=22.15 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHH-hcCCCChHHHHHHHHHhhhcCCCcHHHHHH
Q 026758 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVRE-KADLFSESQRIAYTIETRTAGIPDARTYLL 122 (233)
Q Consensus 44 dd~lK~iF~evqkkF~~~l~~lkk~kI~ldp~DpaAVk~YA~~~~~vr~-k~gl~s~~e~I~~tie~~~~~~~dvR~yL~ 122 (233)
-.++...+.+....+..+-+-++...-+ .|+.+..+.+++. +.+ ..|-.++.+-|...++....-+...|.-..
T Consensus 57 H~~~ee~~~e~~~~~D~lAERI~~LGg~-P~~t~~~~~~~s~----i~e~~~~~~~~~eml~~ll~~~~~~i~~~r~~i~ 131 (164)
T 4eve_A 57 HKATEEIYEEFADMFDDLAERIVQLGHH-PLVTLSEAIKLTR----VKEETKTSFHSKDIFKEILEDYKHLEKEFKELSN 131 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCHHHHHHHCC----SCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHcC----CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544422211 1245555544431 111 233336777787777766655555555444
Q ss_pred HHHHHHHHcCCcchhhhHHHHHHHHHHHHHhh
Q 026758 123 TLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (233)
Q Consensus 123 ~~~EiR~~~Gl~D~~g~~a~mm~ALdkvEK~i 154 (233)
.+.+ ..+.++..+|.+-+...||.+
T Consensus 132 ~aee-------~~D~~T~dll~~il~~~Ek~~ 156 (164)
T 4eve_A 132 TAEK-------EGDKVTVTYADDQLAKLQKSI 156 (164)
T ss_dssp HHHH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------CCCHHHHHHHHHHHHHHHHHH
Confidence 4443 456788888888899988864
No 13
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=25.36 E-value=2.1e+02 Score=22.00 Aligned_cols=99 Identities=11% Similarity=0.111 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHH-hcCCCChHHHHHHHHHhhhcCCCcHHHHHH
Q 026758 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVRE-KADLFSESQRIAYTIETRTAGIPDARTYLL 122 (233)
Q Consensus 44 dd~lK~iF~evqkkF~~~l~~lkk~kI~ldp~DpaAVk~YA~~~~~vr~-k~gl~s~~e~I~~tie~~~~~~~dvR~yL~ 122 (233)
-.++...+.+....+..+-+-+....- ..|+.+..+.+++. +.+ ..|-+++.+-|...++....-+...|.-..
T Consensus 40 H~~~ee~~~~~~~~~D~iAERI~~LGg-~P~~t~~~~~~~s~----i~e~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~ 114 (152)
T 3kwo_A 40 HEYTEKAYEEMAELFDSCAERVLQLGE-KAITCQKVLMENAK----SPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNE 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCCCHHHHHHHCC----SCCCCCSCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHhHCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554442221 11244544444431 111 234447778888877766655555554444
Q ss_pred HHHHHHHHcCCcchhhhHHHHHHHHHHHHHhh
Q 026758 123 TLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (233)
Q Consensus 123 ~~~EiR~~~Gl~D~~g~~a~mm~ALdkvEK~i 154 (233)
.+.+ ..+.++..+|-+-+...||.+
T Consensus 115 ~a~~-------~~D~~T~dll~~~l~~~Ek~~ 139 (152)
T 3kwo_A 115 AAEK-------ESDTTTAAFAQENIAKYEKSL 139 (152)
T ss_dssp HHHH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------CCCHHHHHHHHHHHHHHHHHH
Confidence 4433 346788888888888888754
No 14
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=25.07 E-value=42 Score=25.76 Aligned_cols=37 Identities=8% Similarity=0.187 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhchhccccccCC--CCHHHHHHHHH
Q 026758 49 NIFLDVKKKFETALGVLRKEKITIAP--EDPAAVSQYAN 85 (233)
Q Consensus 49 ~iF~evqkkF~~~l~~lkk~kI~ldp--~DpaAVk~YA~ 85 (233)
.-+.++++.|...=..+.=.-|++|| +.|+.+++|++
T Consensus 53 ~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~ 91 (170)
T 4hde_A 53 ANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQ 91 (170)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred HHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHH
Confidence 34566677776532234456789999 57999999983
No 15
>3ogn_A Odorant-binding protein; helix bundle, transport protein; HET: 3OG; 1.30A {Culex quinquefasciatus} PDB: 2l2c_A 2erb_A* 3n7h_A* 4fqt_A* 3k1e_A*
Probab=24.80 E-value=1.8e+02 Score=21.26 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHcCCcchhhhH
Q 026758 77 PAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAE 140 (233)
Q Consensus 77 paAVk~YA~~~~~vr~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~g~~ 140 (233)
|............+.++.|++ ++.|....++.+.+-+..+=|+.=+-+ ++|+-|.+|.-
T Consensus 12 ~e~~~~~~~~~~~C~~e~gvs--~e~~~~~~~~~~~~d~~~kC~~~C~~~---k~g~~d~~G~~ 70 (124)
T 3ogn_A 12 PELLEALKPLHDICAKKTGVT--DEAIIEFSDGKIHEDEKLKCYMNCLFH---EAKVVDDNGDV 70 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHSCCCCCHHHHHHHHHHHH---HTTCBCTTSCB
T ss_pred HHHHHHHHHHHHHhhhhhCcC--HHHHHHHHcCCCCCCcccCHHHHHHHH---HhCcCCCCCCC
Confidence 444555555677899999995 445666666665556678888888888 99999888744
No 16
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; 2.40A {Agrobacterium tumefaciens} SCOP: a.295.1.1
Probab=21.37 E-value=76 Score=29.15 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHhhhcCCCcH---H------HHHHHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhCCc---cccccHhh
Q 026758 98 SESQRIAYTIETRTAGIPDA---R------TYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKP---LMRNDKKG 165 (233)
Q Consensus 98 s~~e~I~~tie~~~~~~~dv---R------~yL~~~~EiR~~~Gl~D~~g~~a~mm~ALdkvEK~igkp---L~rsDkkG 165 (233)
+-+..|....+|+.+.|.+| - .-+..+-. .+||+|+..+++.|...|+. .+.-| .=+-.-.-
T Consensus 76 a~~p~v~Re~~Yf~enIg~V~SvDDLL~D~RLl~~AL~---AfGLed~~~akaflkKVLes---dlsD~~SfANkLsD~R 149 (323)
T 2o8s_A 76 SKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALK---AHGLEDMAYAKAFIRKVLTE---GASDKNAFANKLSDNR 149 (323)
T ss_dssp TTSHHHHHHHHHHHHHGGGCCSHHHHHTCHHHHHHHHH---HTTGGGSTTCHHHHHHHHHH---CSSSTTCGGGGSSSTH
T ss_pred hcChHHHHHHHHHHHhcCCCCCHHHHhccHHHHHHHHH---hcCCchhhchHHHHHHHHhc---CCCChHHHHHhhcCHH
Confidence 44445555556655444333 2 33445555 89999999999999999864 22111 11111235
Q ss_pred HHHHHHHhCC
Q 026758 166 MALLTAELGI 175 (233)
Q Consensus 166 M~~L~aelGI 175 (233)
+.-|.+.+|+
T Consensus 150 Y~~fA~AFnF 159 (323)
T 2o8s_A 150 YAELAKSLDF 159 (323)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHHcCC
Confidence 7777777553
No 17
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=20.62 E-value=3e+02 Score=21.29 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHH-hcCCCChHHHHHHHHHhhhcCCCcHHHHHH
Q 026758 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVRE-KADLFSESQRIAYTIETRTAGIPDARTYLL 122 (233)
Q Consensus 44 dd~lK~iF~evqkkF~~~l~~lkk~kI~ldp~DpaAVk~YA~~~~~vr~-k~gl~s~~e~I~~tie~~~~~~~dvR~yL~ 122 (233)
-+.+...+.+....+..+-+-+....-+ .|+.+..+.+++ .+.+ ..|-+++.+-+...++....-+...|.-..
T Consensus 52 h~~~ee~~~e~~~~aD~lAERI~~LGg~-P~~~~~~~~~~s----~i~e~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~ 126 (162)
T 1o9r_A 52 HELLDTFRTQLDNHGDTIAERVVQLGGT-ALGSLQAVSSTT----KLKAYPTDIYKIHDHLDALIERYGEVANMIRKAID 126 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHC----CSCCCCSSCCBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHhHC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544422211 124444444443 1222 345567888888888877766666666555
Q ss_pred HHHHHHHHcCCcchhhhHHHHHHHHHHHHHhh
Q 026758 123 TLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (233)
Q Consensus 123 ~~~EiR~~~Gl~D~~g~~a~mm~ALdkvEK~i 154 (233)
.+.+ ..+.++..++-+-+...||.+
T Consensus 127 ~a~~-------~~D~~T~dll~~il~~~Ek~~ 151 (162)
T 1o9r_A 127 DSDE-------AGDPTTADIFTAASRDLDKSL 151 (162)
T ss_dssp HHHH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-------CCCHHHHHHHHHHHHHHHHHH
Confidence 4444 346778888888888888865
No 18
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=20.60 E-value=1.6e+02 Score=26.11 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=50.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHhhh
Q 026758 41 LKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIETRT 111 (233)
Q Consensus 41 ~kGdd~lK~iF~evqkkF~~~l~~lkk~kI~ldp~DpaAVk~YA~~~~~vr~k~gl~s~---------~e~I~~tie~~~ 111 (233)
+.|..+-+.|-.+++++...+ +..++.-|.+-.+||+ -.-|.......-+++|| |. ++.+...|+..-
T Consensus 4 ldGk~~a~~i~~~~~~~v~~l-~~~P~Lavilvg~dpa-S~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN 80 (276)
T 3ngx_A 4 LRGEEIAEKKAENLHGIIERS-GLEPSLKLIQIGDNEA-ASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLA 80 (276)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT-TCCCEEEEEEESCCHH-HHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEeCCCHH-HHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHc
Confidence 467778888888898888877 6556666666546664 56788888888899999 64 466777776665
Q ss_pred cC
Q 026758 112 AG 113 (233)
Q Consensus 112 ~~ 113 (233)
.+
T Consensus 81 ~D 82 (276)
T 3ngx_A 81 KD 82 (276)
T ss_dssp HC
T ss_pred CC
Confidence 43
Done!