BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026760
         (233 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P57265|FOLC_BUCAI Bifunctional protein FolC OS=Buchnera aphidicola subsp.
           Acyrthosiphon pisum (strain APS) GN=folC PE=3 SV=1
          Length = 411

 Score = 33.9 bits (76), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 142 WVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQET---SISNWELPEPCQ 194
           W +FHS I  +N  E   PL  A    S    +R +I+++    SISN +LP   Q
Sbjct: 230 WNFFHSTIQLYNLPETQVPLSSAATALSTLYYSRFKIKEKIIRKSISNVQLPGRFQ 285


>sp|Q3EBI7|FB130_ARATH F-box protein At2g40910 OS=Arabidopsis thaliana GN=At2g40910 PE=2
           SV=1
          Length = 449

 Score = 33.1 bits (74), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 27/113 (23%)

Query: 73  EVVAEWKKVKGKMSLHVHCHISGGHFL------------LDICARLRFFIFSKELPVVLK 120
           E    W+KV+   S H H   + G F+            +D CA + F I S+EL  ++ 
Sbjct: 247 EAGGSWRKVRTLESYHPHAPSTVGQFINGSVVYYMAWLDMDTCAVVSFDITSEELTTIIV 306

Query: 121 AFVHGD---------GNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEA 164
               GD           L+  H E+      V+ H+++ E   V+ W  LK+A
Sbjct: 307 TLEAGDVALPAGRMKAGLIQYHGEIA-----VFDHTHLKEKFLVDLW-VLKDA 353


>sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subunit 4 OS=Homo sapiens GN=SNAPC4
            PE=1 SV=1
          Length = 1469

 Score = 33.1 bits (74), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 169  SEAGGTRHEIRQETSISNWELPEPCQETCNCCFPPMSLIPWSEKLPL------QTENRGT 222
            +EA G+   +  E  ++  E+PEP   T +   PP +  PWS +LP        TE RGT
Sbjct: 1165 AEADGSVAFVPGEAQVAR-EIPEP--RTSSHADPPEAEPPWSGRLPAFGGVIPATEPRGT 1221

Query: 223  QGQESLQQQTR 233
             G  S  Q+ R
Sbjct: 1222 PGSPSGTQEPR 1232


>sp|O43379|WDR62_HUMAN WD repeat-containing protein 62 OS=Homo sapiens GN=WDR62 PE=1 SV=4
          Length = 1518

 Score = 31.2 bits (69), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 166  AGSSEAGGTRHEI----RQETSISNWELPEPCQETCNCCFPPMSLIPWSEKLPLQT 217
            AG+  A   R  +    + E ++  W  P PC  +   C P  S++P    LP  T
Sbjct: 1138 AGTGYASPDRTHVLAAGKAEETLEAWRPPPPCLTSLASCVPASSVLPTDRNLPTPT 1193


>sp|B1HR98|LEU1_LYSSC 2-isopropylmalate synthase OS=Lysinibacillus sphaericus (strain
           C3-41) GN=leuA PE=3 SV=1
          Length = 511

 Score = 30.8 bits (68), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 15  ASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEV 74
           A +L+ L + + E   P   P  +   H          I++T+ NS + G    +Q+D +
Sbjct: 31  AKQLERLGVTIIEAGFPASSPGDFDAVHR---------IAETVKNSVVTGLARCIQKD-I 80

Query: 75  VAEWKKVKGKMSLHVHCHIS 94
              W+ +KG    H+H  ++
Sbjct: 81  DTTWEAIKGAQQPHIHIFLA 100


>sp|Q11U88|MEND_CYTH3 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
           synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 /
           NCIMB 9469) GN=menD PE=3 SV=1
          Length = 559

 Score = 30.8 bits (68), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 21/164 (12%)

Query: 77  EWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVV--LKAFVHGDGNLLNNHP 134
           +WK ++ K+  +      GG  L D   RL+  I + + P +  + + +HG  N+++ H 
Sbjct: 199 QWKSIQHKLDSYKKILFVGGQHLYDESLRLK--IGNIKAPFIGEVVSNLHGVRNVIHTHD 256

Query: 135 ELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETSISNWEL----- 189
            L          ++IP  +  E    L  +  G+  +   +  IR   SI +W +     
Sbjct: 257 TLL---------TSIPLTDLEELKPDLVISFGGALLSKWLKQFIRSNESIDHWYVGPDVT 307

Query: 190 -PEPCQETCNCCFPPMSLIPWSEKLPLQTENRGTQGQESLQQQT 232
            P+  Q  C     P+ L  +  K  + +  +    Q  +QQQT
Sbjct: 308 TPDVFQHLCQII--PVQLNEFLSKTTIASNTQEQFVQRWIQQQT 349


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,299,488
Number of Sequences: 539616
Number of extensions: 3693311
Number of successful extensions: 6924
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6922
Number of HSP's gapped (non-prelim): 9
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)