Query 026760
Match_columns 233
No_of_seqs 75 out of 77
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 21:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j20_A 30S ribosomal protein S 35.5 1.8E+02 0.006 24.8 8.4 81 8-93 22-123 (198)
2 2xzm_4 40S ribosomal protein S 33.3 2.2E+02 0.0075 25.5 9.0 81 9-93 36-144 (265)
3 2d7p_A Filamin-C; beta-sandwic 30.6 1.6E+02 0.0056 22.0 6.7 77 8-91 4-85 (112)
4 3w1s_C Ubiquitin-like protein 27.4 36 0.0012 25.6 2.5 35 11-47 2-36 (91)
5 2e5q_A PHD finger protein 19; 20.4 44 0.0015 24.3 1.7 22 71-94 11-32 (63)
6 2e5p_A Protein PHF1, PHD finge 17.7 1.1E+02 0.0037 22.5 3.2 23 71-95 13-35 (68)
7 4gdk_A Ubiquitin-like protein 17.5 68 0.0023 23.9 2.2 61 16-87 4-82 (91)
8 3qii_A PHD finger protein 20; 17.3 50 0.0017 25.0 1.4 16 69-86 23-38 (85)
9 2eqj_A Metal-response element- 16.9 1.2E+02 0.0042 22.0 3.4 24 70-95 16-39 (66)
10 3p8d_A Medulloblastoma antigen 15.5 61 0.0021 23.3 1.4 16 69-86 8-23 (67)
No 1
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.47 E-value=1.8e+02 Score=24.81 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=50.2
Q ss_pred cCCCCCCCCCceEEEeccCCcCCCCCCCcceeeccCCCCCc--------------------eEEEEccccchhhhhhhcc
Q 026760 8 FGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSK--------------------LTLAISQTINNSQLQGWYN 67 (233)
Q Consensus 8 ~~p~~Fnp~KL~V~f~gvt~~~~P~~ipRrYTLTHsD~T~~--------------------LfLtIg~~fn~dqL~gwy~ 67 (233)
.-|+.|+-..+--+...- ..-+ .+|.+-+|..|.|++ ||==.|.++..|.|....-
T Consensus 22 ~AP~~F~~~~iG~T~~~~---~~~l-~GRv~EvsL~DL~~d~~~~~~K~kf~i~~V~G~~a~T~F~G~~lT~DklrSlVr 97 (198)
T 3j20_A 22 YAPDFFGGVEVGLTPADD---PEKV-LNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVR 97 (198)
T ss_dssp ECCSSSSCCCCCEEEEES---SSCC-SSCEEEECCCSSTTHHHHHCCCEEEEEEEESSSEEEEEEEEECCCHHHHHHHCC
T ss_pred ECchhcCCceeEEEEccC---cccc-cCeEEEEEHHHhcCChhhheEEEEEEEEeccCCEEEEEEcceeechhhhhhhee
Confidence 357888777665554422 1223 899999999999986 3444678888888875221
Q ss_pred c-cccceeeeEEeeeCCeeEEEEEEEe
Q 026760 68 R-LQRDEVVAEWKKVKGKMSLHVHCHI 93 (233)
Q Consensus 68 r-~~RDEVlAEW~~~~g~~~LhV~c~V 93 (233)
| ..+=|..-.=+.. ..|.|.|+|-.
T Consensus 98 k~~s~Iea~vdVkT~-DGy~lRvf~i~ 123 (198)
T 3j20_A 98 RKTTRIDGIFNITTK-DGYKLRVMAMA 123 (198)
T ss_dssp SSSCEEEEEEEEECT-TSCEEEEEEEE
T ss_pred cceeEEEEEEEEEec-CCCEEEEEEEE
Confidence 1 0123444444443 45888888864
No 2
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=33.32 E-value=2.2e+02 Score=25.49 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=50.8
Q ss_pred CCCCCCCCCceEEEeccCCcC--CCC-CCCcceeeccCCCCCc---------------------eEEEEccccchhhhhh
Q 026760 9 GPAIFEASKLKVLFLGVDEEK--HPG-KLPRTYTLTHSDITSK---------------------LTLAISQTINNSQLQG 64 (233)
Q Consensus 9 ~p~~Fnp~KL~V~f~gvt~~~--~P~-~ipRrYTLTHsD~T~~---------------------LfLtIg~~fn~dqL~g 64 (233)
-|+.|+-..+--+...-++.+ .|- -.+|.|-+|..|.|++ ||-=.|.++..|.|..
T Consensus 36 AP~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrS 115 (265)
T 2xzm_4 36 APIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCS 115 (265)
T ss_dssp CCTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTSCCCEEEEEEEEECSSCEEEEEEEEECCHHHHHH
T ss_pred CCcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhhcceEEEEEEEeecCCEEEEEEeeeeccHHHhhh
Confidence 478888777766665311111 121 2899999999999988 3334567778888764
Q ss_pred ----hccccccceeeeEEeeeCCeeEEEEEEEe
Q 026760 65 ----WYNRLQRDEVVAEWKKVKGKMSLHVHCHI 93 (233)
Q Consensus 65 ----wy~r~~RDEVlAEW~~~~g~~~LhV~c~V 93 (233)
|-+ +=|....=+. ...|.|.|+|-.
T Consensus 116 lVrKw~s---~Iea~vdVkT-~DGY~lRvf~i~ 144 (265)
T 2xzm_4 116 MIRKWQT---LIEARVDCKT-NDGYIIRVFTLA 144 (265)
T ss_dssp SCCTTBC---EEEEEEEEEE-TTTEEEEEEEEE
T ss_pred hhcccce---eEEEEEEEEe-CCCcEEEEEEEE
Confidence 433 2344444444 445889888863
No 3
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=30.55 E-value=1.6e+02 Score=21.95 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=46.3
Q ss_pred cCCCCCCCCCceEEEeccCCcCCCCCCCcceeeccCCCCCceEEEEccccc---hhhhhhhccccccc-eeeeEEe-eeC
Q 026760 8 FGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTIN---NSQLQGWYNRLQRD-EVVAEWK-KVK 82 (233)
Q Consensus 8 ~~p~~Fnp~KL~V~f~gvt~~~~P~~ipRrYTLTHsD~T~~LfLtIg~~fn---~dqL~gwy~r~~RD-EVlAEW~-~~~ 82 (233)
+-+...||+|+.|. |.....-.+..+=.+||+-.|.-++|...|-.--. .-+++ ...| -...++. +..
T Consensus 4 ~~~~~~Daskv~~~--g~~~~~~~vg~~~~F~V~~~~a~g~l~v~V~~P~g~~~~~~v~-----d~~~gty~v~ytP~~~ 76 (112)
T 2d7p_A 4 GSSGSDDARRLTVT--SLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVS-----ELDSDKHTIRFIPHEN 76 (112)
T ss_dssp SCCCSCGGGGCEEC--SSCSBCCCTTCCEEEEEECTTCCSCEEEEEECSSSCBCCCEEC-----SCBTTEEEEEECCSSC
T ss_pred cccCCCCcceeEEe--CCCcCCcccCCcEEEEEEeCCCCCCEEEEEECCCCCeeeeEEE-----eCCCCeEEEEEEcCCC
Confidence 34678999999885 44322223346668999999999999988833111 11222 2223 3455665 445
Q ss_pred CeeEEEEEE
Q 026760 83 GKMSLHVHC 91 (233)
Q Consensus 83 g~~~LhV~c 91 (233)
|.|.++|.+
T Consensus 77 G~h~v~V~~ 85 (112)
T 2d7p_A 77 GVHSIDVKF 85 (112)
T ss_dssp EEEEEEEEE
T ss_pred EeEEEEEEE
Confidence 666666654
No 4
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=27.44 E-value=36 Score=25.61 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=18.2
Q ss_pred CCCCCCCceEEEeccCCcCCCCCCCcceeeccCCCCC
Q 026760 11 AIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITS 47 (233)
Q Consensus 11 ~~Fnp~KL~V~f~gvt~~~~P~~ipRrYTLTHsD~T~ 47 (233)
+.++++|..|.|.++. .. |....++|.+.-++..+
T Consensus 2 ~~~~~~Kv~vrfk~~g-~~-P~l~k~KflV~~~~t~~ 36 (91)
T 3w1s_C 2 AHMNIQKIQIKFQPIG-SI-GQLKPSVCKISMSQSFA 36 (91)
T ss_dssp ----CCEEEEEEEECC-C--------EEEEETTSBHH
T ss_pred CCCCCCeEEEEEEecC-CC-CcccccEEEcCCCCCHH
Confidence 5689999999999874 33 55577888877655433
No 5
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.43 E-value=44 Score=24.27 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=15.7
Q ss_pred cceeeeEEeeeCCeeEEEEEEEee
Q 026760 71 RDEVVAEWKKVKGKMSLHVHCHIS 94 (233)
Q Consensus 71 RDEVlAEW~~~~g~~~LhV~c~Vs 94 (233)
=++|||+|. +|.|+|=--+-|+
T Consensus 11 GqdVLarWs--DGlfYlgtV~kV~ 32 (63)
T 2e5q_A 11 GQYVLCRWT--DGLYYLGKIKRVS 32 (63)
T ss_dssp TCEEEEECT--TSCEEEEEECCCC
T ss_pred CCEEEEEec--CCCEEEEEEEEEe
Confidence 489999995 5778875555444
No 6
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.74 E-value=1.1e+02 Score=22.52 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=18.1
Q ss_pred cceeeeEEeeeCCeeEEEEEEEeeC
Q 026760 71 RDEVVAEWKKVKGKMSLHVHCHISG 95 (233)
Q Consensus 71 RDEVlAEW~~~~g~~~LhV~c~VsG 95 (233)
=++|||+|. +|.|+|=--+-|+.
T Consensus 13 GqdVLarWs--DGlfYlGtV~kV~~ 35 (68)
T 2e5p_A 13 GQDVLARWT--DGLLYLGTIKKVDS 35 (68)
T ss_dssp TCEEEEECT--TSSEEEEEEEEEET
T ss_pred CCEEEEEec--CCcEEEeEEEEEec
Confidence 489999996 48888877777764
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=17.47 E-value=68 Score=23.93 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=37.8
Q ss_pred CCceEEEeccCCcCCCCCCCcceeeccCC----------------CCCceEEEEccccch--hhhhhhccccccceeeeE
Q 026760 16 SKLKVLFLGVDEEKHPGKLPRTYTLTHSD----------------ITSKLTLAISQTINN--SQLQGWYNRLQRDEVVAE 77 (233)
Q Consensus 16 ~KL~V~f~gvt~~~~P~~ipRrYTLTHsD----------------~T~~LfLtIg~~fn~--dqL~gwy~r~~RDEVlAE 77 (233)
.|..|.|.++. . -|....++|.+.-++ -+..|||-|++.|.. |+.- .++..+
T Consensus 4 ~Kv~v~fk~~g-~-~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~--------~~Ly~~ 73 (91)
T 4gdk_A 4 KKIDILLKAVG-D-TPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEV--------GTLYEC 73 (91)
T ss_dssp CEEEEEEEECS-S-SCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBH--------HHHHHH
T ss_pred ceEEEEEEecC-C-CCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHH--------HHHHHH
Confidence 57778888874 3 355588888886543 345689999888743 3332 344445
Q ss_pred EeeeCCeeEE
Q 026760 78 WKKVKGKMSL 87 (233)
Q Consensus 78 W~~~~g~~~L 87 (233)
.+ .+|..++
T Consensus 74 ~k-~DGfLyv 82 (91)
T 4gdk_A 74 FG-SDGKLVL 82 (91)
T ss_dssp HC-BTTEEEE
T ss_pred hC-CCCEEEE
Confidence 55 5665443
No 8
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=17.33 E-value=50 Score=24.98 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=11.4
Q ss_pred cccceeeeEEeeeCCeeE
Q 026760 69 LQRDEVVAEWKKVKGKMS 86 (233)
Q Consensus 69 ~~RDEVlAEW~~~~g~~~ 86 (233)
.--|+|+|.| .+++|+
T Consensus 23 ~vGd~VlArW--~D~~yY 38 (85)
T 3qii_A 23 QINEQVLACW--SDCRFY 38 (85)
T ss_dssp CTTCEEEEEC--TTSCEE
T ss_pred ccCCEEEEEe--CCCCEe
Confidence 4459999999 555544
No 9
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=16.95 E-value=1.2e+02 Score=21.99 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.2
Q ss_pred ccceeeeEEeeeCCeeEEEEEEEeeC
Q 026760 70 QRDEVVAEWKKVKGKMSLHVHCHISG 95 (233)
Q Consensus 70 ~RDEVlAEW~~~~g~~~LhV~c~VsG 95 (233)
.-|+|||.| .+|.+++=--+-|+.
T Consensus 16 vGddVLA~w--tDGl~Y~gtI~~V~~ 39 (66)
T 2eqj_A 16 EGQDVLARW--SDGLFYLGTIKKINI 39 (66)
T ss_dssp TTCEEEEEC--TTSCEEEEEEEEEET
T ss_pred CCCEEEEEE--ccCcEEEeEEEEEcc
Confidence 459999999 788888877777765
No 10
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=15.45 E-value=61 Score=23.34 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=11.0
Q ss_pred cccceeeeEEeeeCCeeE
Q 026760 69 LQRDEVVAEWKKVKGKMS 86 (233)
Q Consensus 69 ~~RDEVlAEW~~~~g~~~ 86 (233)
..-|+|+|.| .++.|+
T Consensus 8 ~vGd~vmArW--~D~~yY 23 (67)
T 3p8d_A 8 QINEQVLACW--SDCRFY 23 (67)
T ss_dssp CTTCEEEEEC--TTSCEE
T ss_pred ccCCEEEEEc--CCCCEe
Confidence 3459999999 455443
Done!