Query 026763
Match_columns 233
No_of_seqs 145 out of 1358
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 12:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 1E-29 2.2E-34 229.7 19.9 200 1-202 127-333 (358)
2 PRK11453 O-acetylserine/cystei 99.9 7.1E-25 1.5E-29 193.4 16.5 182 2-200 104-290 (299)
3 PRK11689 aromatic amino acid e 99.9 1.7E-23 3.6E-28 184.4 13.1 182 2-200 109-290 (295)
4 PRK11272 putative DMT superfam 99.9 1.6E-22 3.4E-27 177.9 16.3 173 5-200 116-288 (292)
5 PRK10532 threonine and homoser 99.9 2.7E-22 6E-27 176.6 16.4 176 7-207 116-291 (293)
6 TIGR00950 2A78 Carboxylate/Ami 99.9 1.6E-21 3.5E-26 167.5 15.4 168 2-192 91-259 (260)
7 TIGR00817 tpt Tpt phosphate/ph 99.9 7.9E-22 1.7E-26 174.0 12.2 178 2-200 109-296 (302)
8 PRK15430 putative chlorampheni 99.8 2.5E-20 5.4E-25 164.3 14.9 173 2-202 117-290 (296)
9 TIGR03340 phn_DUF6 phosphonate 99.8 2.8E-20 6.1E-25 162.7 13.5 171 2-194 107-280 (281)
10 PF06027 DUF914: Eukaryotic pr 99.8 2.3E-19 5.1E-24 160.3 14.8 186 3-201 124-309 (334)
11 PTZ00343 triose or hexose phos 99.8 4.1E-18 8.8E-23 153.9 12.9 176 2-198 158-349 (350)
12 COG0697 RhaT Permeases of the 99.7 7.8E-17 1.7E-21 139.0 16.0 170 4-198 117-288 (292)
13 PF00892 EamA: EamA-like trans 99.6 2.3E-15 4.9E-20 114.4 9.0 125 68-196 1-125 (126)
14 COG5006 rhtA Threonine/homoser 99.6 2.9E-14 6.2E-19 121.0 12.9 161 16-198 123-283 (292)
15 TIGR00776 RhaT RhaT L-rhamnose 99.6 3.5E-14 7.6E-19 125.1 11.9 172 3-197 105-288 (290)
16 TIGR00688 rarD rarD protein. T 99.5 7.1E-14 1.5E-18 120.5 12.6 139 2-172 114-255 (256)
17 COG2510 Predicted membrane pro 99.5 8.2E-13 1.8E-17 101.4 12.8 135 60-197 5-139 (140)
18 PF08449 UAA: UAA transporter 99.4 2.1E-12 4.6E-17 114.2 14.5 189 2-201 108-301 (303)
19 KOG2765 Predicted membrane pro 99.4 5.9E-13 1.3E-17 118.5 9.4 187 3-201 204-394 (416)
20 COG2962 RarD Predicted permeas 99.4 1.3E-11 2.8E-16 107.0 15.2 176 2-205 116-291 (293)
21 KOG2766 Predicted membrane pro 99.3 1.2E-13 2.5E-18 117.6 -0.7 178 2-198 122-300 (336)
22 PRK15430 putative chlorampheni 99.3 1.1E-10 2.4E-15 103.0 13.2 139 55-197 5-145 (296)
23 TIGR03340 phn_DUF6 phosphonate 99.2 5.8E-10 1.3E-14 97.5 14.3 134 60-198 3-136 (281)
24 KOG4510 Permease of the drug/m 99.2 1E-11 2.2E-16 106.4 2.5 184 2-196 141-324 (346)
25 TIGR00688 rarD rarD protein. T 99.1 9.2E-10 2E-14 94.8 12.6 137 58-197 2-142 (256)
26 PRK02971 4-amino-4-deoxy-L-ara 99.1 2.1E-10 4.5E-15 89.6 6.8 122 59-201 3-126 (129)
27 KOG1580 UDP-galactose transpor 99.0 1.6E-08 3.5E-13 85.6 14.9 180 3-196 130-312 (337)
28 PF03151 TPT: Triose-phosphate 99.0 8.7E-09 1.9E-13 81.5 12.3 136 59-195 1-151 (153)
29 PLN00411 nodulin MtN21 family 98.9 2.2E-08 4.7E-13 90.9 13.7 140 57-198 12-157 (358)
30 PRK11272 putative DMT superfam 98.9 5.9E-08 1.3E-12 85.4 14.3 132 60-198 10-142 (292)
31 TIGR00950 2A78 Carboxylate/Ami 98.9 2.9E-08 6.2E-13 85.1 11.5 119 70-197 1-119 (260)
32 PF13536 EmrE: Multidrug resis 98.8 1.8E-08 3.8E-13 76.6 7.6 76 124-200 34-109 (113)
33 PRK11453 O-acetylserine/cystei 98.8 1.1E-07 2.5E-12 83.8 12.8 127 60-198 6-133 (299)
34 PF04142 Nuc_sug_transp: Nucle 98.8 1.4E-07 3.1E-12 81.3 12.9 178 3-188 62-244 (244)
35 TIGR00817 tpt Tpt phosphate/ph 98.8 2.2E-07 4.7E-12 82.0 13.9 119 73-195 17-135 (302)
36 PTZ00343 triose or hexose phos 98.7 3.5E-07 7.5E-12 82.8 15.2 123 71-196 62-185 (350)
37 PRK11689 aromatic amino acid e 98.7 2.2E-07 4.7E-12 82.0 13.5 131 58-198 4-138 (295)
38 PRK15051 4-amino-4-deoxy-L-ara 98.7 1.2E-07 2.6E-12 72.2 8.8 67 130-196 42-108 (111)
39 KOG1441 Glucose-6-phosphate/ph 98.6 1.3E-08 2.9E-13 90.5 1.4 184 1-205 126-315 (316)
40 TIGR00803 nst UDP-galactose tr 98.6 2.8E-07 6E-12 77.9 8.5 186 2-194 22-221 (222)
41 KOG1581 UDP-galactose transpor 98.6 3.1E-07 6.7E-12 80.3 8.7 187 2-200 127-316 (327)
42 KOG2234 Predicted UDP-galactos 98.5 4.7E-06 1E-10 74.4 15.8 185 4-202 138-327 (345)
43 KOG1583 UDP-N-acetylglucosamin 98.5 2.6E-06 5.6E-11 73.8 12.9 206 2-209 109-328 (330)
44 COG0697 RhaT Permeases of the 98.5 4.4E-06 9.6E-11 71.8 14.3 142 56-201 5-147 (292)
45 COG2962 RarD Predicted permeas 98.4 5.7E-06 1.2E-10 72.2 11.7 140 56-198 5-145 (293)
46 TIGR00776 RhaT RhaT L-rhamnose 98.3 6.2E-06 1.4E-10 72.7 10.9 131 59-198 2-137 (290)
47 KOG1582 UDP-galactose transpor 98.3 9.5E-06 2.1E-10 70.3 11.3 180 3-199 151-334 (367)
48 KOG1444 Nucleotide-sugar trans 98.3 1.5E-05 3.2E-10 70.4 12.7 179 1-202 120-305 (314)
49 PRK10452 multidrug efflux syst 98.2 4.8E-06 1E-10 64.2 6.5 69 131-199 36-105 (120)
50 PRK10532 threonine and homoser 98.2 4.6E-05 9.9E-10 67.1 13.1 127 56-196 10-136 (293)
51 PF06800 Sugar_transport: Suga 98.1 4.2E-05 9.2E-10 66.7 12.4 166 4-194 92-268 (269)
52 KOG3912 Predicted integral mem 98.1 1.3E-05 2.8E-10 69.8 7.5 182 4-196 132-333 (372)
53 PF08449 UAA: UAA transporter 98.0 0.00012 2.5E-09 64.8 12.0 129 72-206 14-145 (303)
54 PRK09541 emrE multidrug efflux 98.0 2.4E-05 5.2E-10 59.5 6.3 67 133-199 38-105 (110)
55 PF06027 DUF914: Eukaryotic pr 97.9 0.00016 3.4E-09 65.1 12.2 139 57-200 16-154 (334)
56 PF04657 DUF606: Protein of un 97.9 0.00028 6E-09 55.7 11.7 131 60-194 3-138 (138)
57 COG5070 VRG4 Nucleotide-sugar 97.8 7E-05 1.5E-09 63.3 7.6 195 1-211 111-308 (309)
58 KOG1442 GDP-fucose transporter 97.7 4.8E-05 1E-09 66.1 4.5 193 3-213 147-343 (347)
59 PF05653 Mg_trans_NIPA: Magnes 97.7 4.4E-05 9.6E-10 67.8 4.0 69 132-200 220-295 (300)
60 PRK10650 multidrug efflux syst 97.6 0.00073 1.6E-08 51.2 9.9 63 134-196 44-107 (109)
61 COG2076 EmrE Membrane transpor 97.6 0.00016 3.4E-09 54.4 6.1 64 135-198 40-104 (106)
62 PF06800 Sugar_transport: Suga 97.6 0.00079 1.7E-08 58.8 11.0 108 93-204 17-129 (269)
63 PRK11431 multidrug efflux syst 97.6 0.0002 4.4E-09 53.9 6.4 64 134-197 38-102 (105)
64 KOG1443 Predicted integral mem 97.6 0.0012 2.6E-08 58.3 11.9 167 8-195 134-313 (349)
65 PF05653 Mg_trans_NIPA: Magnes 97.6 0.00022 4.8E-09 63.4 7.1 120 54-197 3-122 (300)
66 KOG4510 Permease of the drug/m 97.4 0.00014 3E-09 63.1 4.0 134 56-198 36-170 (346)
67 PF00893 Multi_Drug_Res: Small 97.3 0.00042 9.1E-09 50.9 4.6 55 134-188 38-93 (93)
68 PRK13499 rhamnose-proton sympo 97.2 0.0029 6.2E-08 57.3 10.0 138 55-199 4-155 (345)
69 PF04142 Nuc_sug_transp: Nucle 97.2 0.00042 9.1E-09 59.8 4.3 71 136-206 28-98 (244)
70 COG3238 Uncharacterized protei 97.2 0.0095 2.1E-07 47.6 11.4 140 57-199 4-148 (150)
71 PRK13499 rhamnose-proton sympo 97.0 0.098 2.1E-06 47.4 17.9 179 12-199 135-343 (345)
72 COG4975 GlcU Putative glucose 97.0 0.00025 5.5E-09 60.7 1.2 133 59-201 3-140 (288)
73 KOG4314 Predicted carbohydrate 96.5 0.0049 1.1E-07 51.5 5.3 175 3-199 98-278 (290)
74 KOG2922 Uncharacterized conser 95.7 0.0052 1.1E-07 54.6 1.8 192 2-206 108-315 (335)
75 PF10639 UPF0546: Uncharacteri 95.4 0.025 5.4E-07 43.1 4.3 58 137-194 53-111 (113)
76 KOG1441 Glucose-6-phosphate/ph 95.4 0.01 2.2E-07 53.1 2.4 117 73-192 32-150 (316)
77 KOG2922 Uncharacterized conser 95.1 0.0046 1E-07 54.9 -0.7 125 52-200 15-139 (335)
78 KOG2234 Predicted UDP-galactos 94.2 1.7 3.7E-05 39.3 13.4 61 139-199 106-166 (345)
79 KOG2765 Predicted membrane pro 94.1 0.031 6.8E-07 50.8 2.2 67 136-202 170-236 (416)
80 KOG4314 Predicted carbohydrate 93.4 0.035 7.6E-07 46.5 1.2 61 138-198 66-126 (290)
81 PF06379 RhaT: L-rhamnose-prot 92.0 2 4.4E-05 38.8 10.5 140 55-199 4-155 (344)
82 PF07857 DUF1632: CEO family ( 91.7 0.35 7.6E-06 42.0 5.1 25 178-202 115-139 (254)
83 PF04342 DUF486: Protein of un 90.8 0.22 4.9E-06 37.3 2.6 30 166-195 77-106 (108)
84 COG4975 GlcU Putative glucose 90.5 0.057 1.2E-06 46.6 -0.8 130 53-194 147-282 (288)
85 COG2271 UhpC Sugar phosphate p 88.9 2.5 5.5E-05 39.5 8.5 71 160-232 168-246 (448)
86 COG3169 Uncharacterized protei 88.6 0.99 2.1E-05 33.5 4.5 33 165-197 83-115 (116)
87 KOG1444 Nucleotide-sugar trans 88.2 12 0.00027 33.5 12.0 116 72-195 26-147 (314)
88 PRK02237 hypothetical protein; 86.5 2.4 5.3E-05 31.9 5.7 38 163-200 71-108 (109)
89 KOG1580 UDP-galactose transpor 85.1 1.9 4E-05 37.3 5.0 131 65-201 20-161 (337)
90 PRK06638 NADH:ubiquinone oxido 85.0 21 0.00046 29.7 13.4 32 166-197 133-166 (198)
91 PF02694 UPF0060: Uncharacteri 81.7 1.8 3.9E-05 32.5 3.2 37 164-200 70-106 (107)
92 PF05977 MFS_3: Transmembrane 81.0 29 0.00063 33.2 12.1 44 155-198 350-393 (524)
93 KOG3912 Predicted integral mem 80.3 1.8 4E-05 38.3 3.3 57 141-197 102-158 (372)
94 KOG1443 Predicted integral mem 78.9 9.4 0.0002 34.2 7.2 65 134-198 93-157 (349)
95 PF04246 RseC_MucC: Positive r 78.4 1.3 2.9E-05 34.3 1.7 36 153-189 69-107 (135)
96 PRK09541 emrE multidrug efflux 78.1 1.2 2.5E-05 33.8 1.2 29 2-30 75-103 (110)
97 PF15099 PIRT: Phosphoinositid 77.0 1.5 3.3E-05 33.9 1.6 17 125-141 57-73 (129)
98 PRK10452 multidrug efflux syst 76.8 1.7 3.7E-05 33.4 1.8 28 3-30 76-103 (120)
99 TIGR02840 spore_YtaF putative 75.3 3.2 7E-05 34.8 3.3 43 154-196 36-80 (206)
100 COG5006 rhtA Threonine/homoser 70.6 75 0.0016 27.9 12.2 102 59-168 13-114 (292)
101 KOG1442 GDP-fucose transporter 69.0 2.2 4.9E-05 37.6 1.0 105 85-195 59-172 (347)
102 KOG1581 UDP-galactose transpor 68.3 62 0.0013 29.1 9.7 126 69-202 25-160 (327)
103 COG3086 RseC Positive regulato 67.1 3.7 8E-05 32.6 1.7 26 147-172 70-95 (150)
104 KOG1583 UDP-N-acetylglucosamin 63.4 6.6 0.00014 34.8 2.7 74 140-214 79-153 (330)
105 PF01102 Glycophorin_A: Glycop 63.0 9.2 0.0002 29.5 3.2 10 183-192 75-84 (122)
106 PF04306 DUF456: Protein of un 62.6 54 0.0012 25.7 7.6 71 123-203 32-103 (140)
107 PRK11469 hypothetical protein; 62.2 5.6 0.00012 32.9 2.0 40 157-196 46-86 (188)
108 PRK13108 prolipoprotein diacyl 61.5 28 0.00061 32.9 6.8 45 154-198 226-275 (460)
109 PRK10489 enterobactin exporter 61.1 1.2E+02 0.0027 27.1 13.7 55 161-217 361-416 (417)
110 PRK10862 SoxR reducing system 59.8 5.9 0.00013 31.7 1.7 18 155-172 78-95 (154)
111 PF11044 TMEMspv1-c74-12: Plec 59.4 6.5 0.00014 24.7 1.4 13 179-191 4-16 (49)
112 PF06946 Phage_holin_5: Phage 59.1 53 0.0011 24.1 6.4 58 143-200 22-83 (93)
113 COG4657 RnfA Predicted NADH:ub 58.8 33 0.00072 27.9 5.8 19 57-75 102-120 (193)
114 PRK09584 tppB putative tripept 58.1 1.7E+02 0.0036 27.6 12.7 84 78-162 341-424 (500)
115 COG1742 Uncharacterized conser 57.6 19 0.00042 27.0 4.0 38 163-200 70-107 (109)
116 PF03595 SLAC1: Voltage-depend 56.9 1.4E+02 0.003 26.3 10.6 44 13-72 5-48 (330)
117 PF11457 DUF3021: Protein of u 56.3 87 0.0019 23.8 10.4 105 92-197 12-118 (136)
118 KOG4831 Unnamed protein [Funct 56.1 30 0.00064 26.2 4.7 56 139-195 66-123 (125)
119 PF02487 CLN3: CLN3 protein; 55.8 29 0.00063 32.3 5.8 22 7-28 85-106 (402)
120 PF05297 Herpes_LMP1: Herpesvi 55.6 3.9 8.4E-05 36.2 0.0 25 136-160 119-143 (381)
121 PRK05122 major facilitator sup 54.2 1.6E+02 0.0034 26.1 12.6 38 163-200 353-390 (399)
122 PF11295 DUF3096: Protein of u 53.9 12 0.00026 22.9 1.9 32 162-193 1-32 (39)
123 PF13994 PgaD: PgaD-like prote 53.5 46 0.001 25.9 5.9 21 181-201 65-85 (138)
124 PRK11652 emrD multidrug resist 53.3 1.6E+02 0.0035 26.0 14.4 20 152-171 334-353 (394)
125 PRK11902 ampG muropeptide tran 51.5 1.8E+02 0.0039 26.0 13.1 19 179-197 370-388 (402)
126 PF08611 DUF1774: Fungal prote 50.3 20 0.00043 26.5 3.0 11 215-225 87-97 (97)
127 CHL00196 psbY photosystem II p 47.2 47 0.001 20.0 3.7 21 57-77 5-25 (36)
128 PF03547 Mem_trans: Membrane t 45.1 2.3E+02 0.005 25.4 12.4 10 161-170 111-120 (385)
129 TIGR00544 lgt prolipoprotein d 45.1 61 0.0013 28.4 5.9 46 154-199 214-268 (278)
130 COG5070 VRG4 Nucleotide-sugar 45.1 1.9E+02 0.0041 25.1 8.5 110 87-203 37-146 (309)
131 PF07168 Ureide_permease: Urei 44.6 46 0.001 29.9 4.9 129 64-195 2-144 (336)
132 PF07444 Ycf66_N: Ycf66 protei 44.2 21 0.00045 25.7 2.3 32 175-206 3-34 (84)
133 PF01914 MarC: MarC family int 42.9 20 0.00043 30.0 2.4 25 172-196 64-89 (203)
134 PF15102 TMEM154: TMEM154 prot 42.7 19 0.00042 28.6 2.1 11 212-222 103-113 (146)
135 PRK11010 ampG muropeptide tran 42.6 2.9E+02 0.0063 25.8 13.6 54 145-198 345-402 (491)
136 PF02038 ATP1G1_PLM_MAT8: ATP1 41.9 30 0.00064 22.4 2.5 25 182-206 20-44 (50)
137 KOG3762 Predicted transporter 41.4 2.6E+02 0.0057 27.5 9.7 23 136-158 420-442 (618)
138 PF06379 RhaT: L-rhamnose-prot 40.6 2.9E+02 0.0062 25.2 15.2 181 8-197 131-340 (344)
139 PF06298 PsbY: Photosystem II 40.5 67 0.0015 19.3 3.7 21 58-78 6-26 (36)
140 PRK11111 hypothetical protein; 40.0 31 0.00068 29.1 3.1 24 172-195 70-94 (214)
141 COG1971 Predicted membrane pro 39.7 26 0.00057 29.1 2.5 41 157-197 46-87 (190)
142 PF04191 PEMT: Phospholipid me 39.3 41 0.00089 24.2 3.4 22 179-200 1-22 (106)
143 PF15330 SIT: SHP2-interacting 38.1 37 0.0008 25.5 2.9 24 182-205 6-30 (107)
144 PRK12437 prolipoprotein diacyl 37.3 94 0.002 27.1 5.8 46 153-198 206-256 (269)
145 PRK00159 putative septation in 37.2 1.5E+02 0.0032 21.5 5.8 55 122-196 30-84 (87)
146 KOG1397 Ca2+/H+ antiporter VCX 36.1 21 0.00045 33.1 1.5 26 206-231 268-293 (441)
147 COG3197 FixS Uncharacterized p 35.7 52 0.0011 21.9 3.0 28 178-205 5-32 (58)
148 COG2851 CitM H+/citrate sympor 34.8 21 0.00045 33.0 1.3 54 177-230 178-233 (433)
149 PRK10489 enterobactin exporter 34.5 3.4E+02 0.0073 24.2 10.1 20 9-28 17-36 (417)
150 PF06781 UPF0233: Uncharacteri 34.2 87 0.0019 22.7 4.2 54 122-196 30-84 (87)
151 PRK14397 membrane protein; Pro 34.1 2.6E+02 0.0056 23.9 7.7 16 208-223 194-209 (222)
152 PF09656 PGPGW: Putative trans 34.0 1.4E+02 0.003 19.6 5.0 46 13-83 4-49 (53)
153 PRK13240 pbsY photosystem II p 33.8 92 0.002 19.2 3.6 19 58-76 6-24 (40)
154 TIGR00840 b_cpa1 sodium/hydrog 33.6 4.1E+02 0.0089 25.8 10.0 43 57-100 9-51 (559)
155 PRK02251 putative septation in 33.2 1.9E+02 0.0041 21.0 6.0 54 122-196 31-84 (87)
156 PF12606 RELT: Tumour necrosis 32.5 53 0.0012 21.2 2.6 7 190-196 16-22 (50)
157 PF10710 DUF2512: Protein of u 32.1 2.4E+02 0.0053 22.0 6.8 33 124-156 30-63 (136)
158 COG5336 Uncharacterized protei 31.9 1.5E+02 0.0032 22.6 5.2 8 190-197 87-94 (116)
159 PF01350 Flavi_NS4A: Flaviviru 31.8 2.6E+02 0.0057 22.2 7.9 67 139-209 62-128 (144)
160 COG4858 Uncharacterized membra 31.5 3.1E+02 0.0068 23.0 9.7 40 124-163 127-168 (226)
161 PRK05585 yajC preprotein trans 31.4 36 0.00078 25.5 1.9 11 190-200 29-39 (106)
162 PRK15049 L-asparagine permease 30.6 2.6E+02 0.0055 26.5 8.0 14 157-170 421-434 (499)
163 PF00909 Ammonium_transp: Ammo 30.0 4.4E+02 0.0095 24.2 10.7 63 127-189 277-358 (399)
164 COG2034 Predicted membrane pro 29.9 51 0.0011 23.8 2.4 25 180-204 14-38 (85)
165 PF06123 CreD: Inner membrane 29.6 4.8E+02 0.01 24.5 10.1 40 155-197 382-421 (430)
166 PF02699 YajC: Preprotein tran 29.1 53 0.0011 23.3 2.4 20 190-209 13-32 (82)
167 MTH00057 ND6 NADH dehydrogenas 28.9 3.3E+02 0.0071 22.3 12.3 24 166-189 132-155 (186)
168 PRK09556 uhpT sugar phosphate 28.6 4.6E+02 0.01 24.0 13.6 13 143-155 372-384 (467)
169 PF15108 TMEM37: Voltage-depen 28.5 3.2E+02 0.007 22.2 7.0 74 16-102 93-168 (184)
170 PRK10599 calcium/sodium:proton 28.1 4.8E+02 0.01 24.0 15.8 16 61-76 43-58 (366)
171 COG2149 Predicted membrane pro 27.4 1.3E+02 0.0027 23.1 4.2 47 129-196 26-72 (120)
172 PRK00052 prolipoprotein diacyl 27.4 1.5E+02 0.0033 25.8 5.4 46 153-198 208-258 (269)
173 PRK10644 arginine:agmatin anti 27.3 3.3E+02 0.0072 25.0 8.1 19 155-173 384-402 (445)
174 TIGR00905 2A0302 transporter, 26.7 4.8E+02 0.01 24.2 9.1 41 156-197 393-434 (473)
175 PF01618 MotA_ExbB: MotA/TolQ/ 26.4 2.5E+02 0.0053 21.6 6.0 23 129-151 67-89 (139)
176 PF08507 COPI_assoc: COPI asso 26.4 1.4E+02 0.003 23.0 4.5 12 182-193 90-101 (136)
177 TIGR00836 amt ammonium transpo 25.9 5.4E+02 0.012 23.9 9.2 64 126-189 281-362 (403)
178 PF07214 DUF1418: Protein of u 25.8 1.5E+02 0.0033 21.9 4.3 16 182-197 50-65 (96)
179 PF13038 DUF3899: Domain of un 25.7 63 0.0014 23.1 2.4 17 178-194 3-19 (92)
180 PF11755 DUF3311: Protein of u 25.5 1.7E+02 0.0036 19.8 4.3 40 159-198 4-52 (66)
181 PF07123 PsbW: Photosystem II 25.2 46 0.001 26.2 1.6 31 52-82 100-130 (138)
182 KOG2325 Predicted transporter/ 25.1 3.8E+02 0.0082 25.7 8.0 20 87-106 104-123 (488)
183 PRK10655 potE putrescine trans 24.9 3.2E+02 0.007 25.0 7.5 47 160-206 389-436 (438)
184 TIGR01167 LPXTG_anchor LPXTG-m 24.9 91 0.002 17.6 2.5 15 178-192 11-25 (34)
185 COG0682 Lgt Prolipoprotein dia 24.4 2.3E+02 0.005 25.1 6.0 24 180-203 255-278 (287)
186 PRK10591 hypothetical protein; 24.3 1.8E+02 0.0038 21.3 4.3 17 182-198 50-66 (92)
187 PHA03265 envelope glycoprotein 24.0 46 0.001 30.4 1.6 31 187-217 361-392 (402)
188 PF04277 OAD_gamma: Oxaloaceta 23.9 1.2E+02 0.0025 20.8 3.4 11 182-192 9-19 (79)
189 PF11381 DUF3185: Protein of u 23.7 32 0.00069 23.1 0.4 20 181-200 1-20 (59)
190 PLN00028 nitrate transmembrane 23.5 5.9E+02 0.013 23.5 10.3 13 182-194 417-429 (476)
191 COG3247 HdeD Uncharacterized c 23.5 4.3E+02 0.0092 21.9 13.6 63 131-196 110-176 (185)
192 KOG2766 Predicted membrane pro 23.4 4.8 0.0001 35.3 -4.5 58 141-198 94-151 (336)
193 TIGR00739 yajC preprotein tran 23.3 56 0.0012 23.3 1.6 15 190-204 14-28 (84)
194 TIGR00816 tdt C4-dicarboxylate 23.1 5.2E+02 0.011 22.7 14.9 72 14-101 4-83 (320)
195 PRK10921 twin-arginine protein 23.1 1.1E+02 0.0024 26.5 3.8 55 143-198 175-236 (258)
196 PRK11357 frlA putative fructos 22.8 5.9E+02 0.013 23.3 9.6 40 156-196 388-432 (445)
197 TIGR00847 ccoS cytochrome oxid 22.8 56 0.0012 21.2 1.4 23 183-205 10-32 (51)
198 COG1033 Predicted exporters of 22.6 3E+02 0.0065 27.8 7.0 53 136-198 210-271 (727)
199 PF04632 FUSC: Fusaric acid re 22.4 6.1E+02 0.013 24.5 9.2 18 12-29 50-67 (650)
200 PF06963 FPN1: Ferroportin1 (F 22.3 3.7E+02 0.008 25.2 7.3 64 129-195 300-366 (432)
201 PF07690 MFS_1: Major Facilita 22.2 4.8E+02 0.01 22.0 11.5 27 125-151 90-116 (352)
202 PF12868 DUF3824: Domain of un 22.0 88 0.0019 24.6 2.6 15 181-195 8-22 (137)
203 PRK11383 hypothetical protein; 21.8 4.1E+02 0.0089 21.1 11.4 23 87-109 11-33 (145)
204 TIGR00921 2A067 The (Largely A 21.5 1.6E+02 0.0034 29.0 5.0 49 141-189 209-257 (719)
205 PRK05886 yajC preprotein trans 21.3 72 0.0016 24.1 2.0 11 188-198 13-23 (109)
206 PRK10734 putative calcium/sodi 21.2 1.7E+02 0.0038 26.2 4.8 23 171-195 118-141 (325)
207 PF15471 TMEM171: Transmembran 20.9 59 0.0013 28.6 1.6 37 179-215 161-199 (319)
208 TIGR00908 2A0305 ethanolamine 20.9 3.6E+02 0.0077 24.7 6.9 18 156-173 384-401 (442)
209 TIGR00803 nst UDP-galactose tr 20.7 61 0.0013 26.8 1.7 42 157-198 10-51 (222)
210 TIGR00427 membrane protein, Ma 20.6 1.1E+02 0.0025 25.4 3.2 24 172-195 67-91 (201)
211 PF10754 DUF2569: Protein of u 20.1 3.6E+02 0.0079 21.0 5.9 28 55-82 118-145 (149)
212 PF03151 TPT: Triose-phosphate 20.0 3.9E+02 0.0084 20.1 7.5 51 58-110 79-129 (153)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=1e-29 Score=229.73 Aligned_cols=200 Identities=38% Similarity=0.813 Sum_probs=156.0
Q ss_pred CcceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCc-----cCC-CCCCCCCchhhHHHHHHHHHHHHHHHH
Q 026763 1 MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN-----LHN-ELRSPQKNWIIGGLVLAAGSFFLSLLY 74 (233)
Q Consensus 1 ~e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~-----~~~-~~~~~~~~~~~G~ll~l~aa~~~a~y~ 74 (233)
+|++.+|||+++++++|++++++|++++...+++... .+++++ .+. +......+...|++++++|+++||+|+
T Consensus 127 ~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~ 205 (358)
T PLN00411 127 MEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVF-VASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSF 205 (358)
T ss_pred hchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccc-cccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999988754443210 000000 000 011122345679999999999999999
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCC-CCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcce
Q 026763 75 IVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVY 153 (233)
Q Consensus 75 v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~ 153 (233)
+++|+..+++++....++|++.++++.+.+.+...++. ...|...++.....++|.+++ +.++|.+|+|++++.||++
T Consensus 206 il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~ 284 (358)
T PLN00411 206 ILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLY 284 (358)
T ss_pred HHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchH
Confidence 99999988887666788899999998888877776542 223322223345568898876 6789999999999999999
Q ss_pred eeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhh
Q 026763 154 VSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 202 (233)
Q Consensus 154 ~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~ 202 (233)
++++.+++|++++++|+++|||++++.+++|+++|+.|++++.+++++|
T Consensus 285 as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 285 LAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999998765544
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.93 E-value=7.1e-25 Score=193.44 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=145.3
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
+.+++|||+++++++|++++++|+.++.. ++. ........|+++.++++++|++|++++|+..
T Consensus 104 ~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~-~~~----------------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~ 166 (299)
T PRK11453 104 GAFTFGERLQGKQLAGIALAIFGVLVLIE-DSL----------------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIM 166 (299)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHhHHHhcc-ccC----------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999988752 110 0111234799999999999999999999987
Q ss_pred hhcCh--hhHHHHHHHHHHHHHHHHHHHHhcCCC---CccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeee
Q 026763 82 REYPE--ELMATFICCVFVTIQSTVVALIAERNP---NSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSM 156 (233)
Q Consensus 82 ~~~~~--~l~~t~~~~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~ 156 (233)
++.++ ......++++.+.+.+...+...+.+. ..+...+...|..++|+|+++|+++|.+|++++++.++++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~ 246 (299)
T PRK11453 167 SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAP 246 (299)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 65432 234556777777766665554444321 0111112346889999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 157 YKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 157 ~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
+.+++|+++.++|++++||++++.+++|+++|+.|+++..++++
T Consensus 247 ~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 247 LSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999887765
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.90 E-value=1.7e-23 Score=184.43 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=134.1
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
..+++|||+++.+++|++++++|++++... +......+ ..+...+...|+++.++|+++||+|+++.|+..
T Consensus 109 ~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~-~~~~~~~~--------~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~ 179 (295)
T PRK11689 109 AVLFNGQKANWLLIPGLLLALAGVAWVLGG-DNGLSLAE--------LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYA 179 (295)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhHhheecC-Cccchhhh--------hhhccccChHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356789999999999999999999887532 11100000 000001234699999999999999999999987
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchH
Q 026763 82 REYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLG 161 (233)
Q Consensus 82 ~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~ 161 (233)
+++ ++.... ...+++.+.+.....+.+...+ +...|..++|.++ +++++|.+|++++|+.++++++.+.+++
T Consensus 180 ~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~ 251 (295)
T PRK11689 180 RGK-NGITLF---FILTALALWIKYFLSPQPAMVF---SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFT 251 (295)
T ss_pred CCC-CchhHH---HHHHHHHHHHHHHHhcCccccC---CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhH
Confidence 665 354432 2233444444333332211111 2245777888884 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 162 IVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 162 Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
|+++++++++++||++++.+++|+++|+.|+++..+.++
T Consensus 252 Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 252 PVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 999999999999999999999999999999988766543
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.89 E-value=1.6e-22 Score=177.94 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=142.9
Q ss_pred ecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026763 5 DLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREY 84 (233)
Q Consensus 5 ~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~ 84 (233)
++|||+++++++|++++++|+.++... +. . .....|+++.++++++||.|.+..|+..++
T Consensus 116 ~~~e~~~~~~~~~~~la~~Gv~ll~~~-~~-----------------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~- 175 (292)
T PRK11272 116 LFGIRTRKLEWLGIAIGLAGIVLLNSG-GN-----------------L-SGNPWGAILILIASASWAFGSVWSSRLPLP- 175 (292)
T ss_pred HhcccCchhHHHHHHHHHHhHHHHhcC-cc-----------------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 369999999999999999999876421 10 1 123579999999999999999999987543
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHH
Q 026763 85 PEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVF 164 (233)
Q Consensus 85 ~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~ 164 (233)
++...+++++.++++.+.+.....+.+... ......|..++|+++++|+++|.+|++++++.++++++.+.+++|++
T Consensus 176 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~ 252 (292)
T PRK11272 176 -VGMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVV 252 (292)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 245667899999998888876654432211 11224688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 165 AIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 165 a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
+++++++++||++++.+++|+++|+.|+++..+.++
T Consensus 253 a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 253 AVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988766544
No 5
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.89 E-value=2.7e-22 Score=176.55 Aligned_cols=176 Identities=11% Similarity=0.054 Sum_probs=136.8
Q ss_pred ccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 026763 7 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPE 86 (233)
Q Consensus 7 ke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~ 86 (233)
+|+++ +..++.++++|+.++.. .+.+ .+.....|+++.++++++|++|++..|+..++++
T Consensus 116 ~~~~~--~~~~~~i~~~Gv~li~~-~~~~----------------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~- 175 (293)
T PRK10532 116 SRRPV--DFVWVVLAVLGLWFLLP-LGQD----------------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHG- 175 (293)
T ss_pred cCChH--HHHHHHHHHHHHheeee-cCCC----------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 35554 45667889999987652 1110 1112357999999999999999999999877764
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHH
Q 026763 87 ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAI 166 (233)
Q Consensus 87 ~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~ 166 (233)
+... .++++++++++.++....+. ...+ ....|..++|+|+++|+++|.+|+++++|.++++++++.++||+++.
T Consensus 176 ~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~ 250 (293)
T PRK10532 176 PATV-AIGSLIAALIFVPIGALQAG-EALW---HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAA 250 (293)
T ss_pred chHH-HHHHHHHHHHHHHHHHHccC-cccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHH
Confidence 5555 57778888787776654332 1111 12345567899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhhhhhc
Q 026763 167 IMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMID 207 (233)
Q Consensus 167 i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~~~ 207 (233)
++|++++||++++.|++|+++|+.|++...+..++|.|.||
T Consensus 251 l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~ 291 (293)
T PRK10532 251 VSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE 291 (293)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999888777665555553
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.87 E-value=1.6e-21 Score=167.50 Aligned_cols=168 Identities=16% Similarity=0.146 Sum_probs=140.5
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
..+++|||+++++++|++++++|++++.. ++ .......|+++.++++++|+.|.++.|+..
T Consensus 91 ~~l~~~e~~~~~~~~gi~i~~~Gv~li~~-~~------------------~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~ 151 (260)
T TIGR00950 91 SDLMGKERPRKLVLLAAVLGLAGAVLLLS-DG------------------NLSINPAGLLLGLGSGISFALGTVLYKRLV 151 (260)
T ss_pred HHHHccCCCcHHHHHHHHHHHHhHHhhcc-CC------------------cccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 35689999999999999999999988752 11 112346899999999999999999999988
Q ss_pred hhcC-hhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccch
Q 026763 82 REYP-EELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPL 160 (233)
Q Consensus 82 ~~~~-~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l 160 (233)
++.+ .+...+.+++.++++.+.+.....+++. .+ ....|..+++.+++++.++|.+|++++++.++++++.+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~ 227 (260)
T TIGR00950 152 KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALA 227 (260)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 7654 2345566788899888888766544322 11 23457788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCccchhhhhhHHHHHHHH
Q 026763 161 GIVFAIIMGVTLLGDTLYLGSVVGATIVAFGF 192 (233)
Q Consensus 161 ~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv 192 (233)
+|+++++++++++||+++..+++|+++++.|+
T Consensus 228 ~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 228 EPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999986
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.87 E-value=7.9e-22 Score=174.00 Aligned_cols=178 Identities=11% Similarity=0.035 Sum_probs=134.9
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
+.+++|||+++++++|++++++|+++.. .+ ..+....|+++.++|+++|++|.++.|+..
T Consensus 109 ~~~~~~e~~~~~~~~~l~l~~~Gv~l~~--~~------------------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 168 (302)
T TIGR00817 109 SAFFLGQEFPSTLWLSLLPIVGGVALAS--DT------------------ELSFNWAGFLSAMISNITFVSRNIFSKKAM 168 (302)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhhhc--CC------------------cccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999997642 11 011235699999999999999999999987
Q ss_pred h--hcChhhHHHHHHHHHHHHHHHHHHHHhcCCCC---cccc----CC-chhHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 026763 82 R--EYPEELMATFICCVFVTIQSTVVALIAERNPN---SWRL----KP-DTELIAIGCSAFFAVALRSLAHTWACHKKGP 151 (233)
Q Consensus 82 ~--~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~---~~~~----~~-~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~ 151 (233)
+ ++ ++...+.|++.++++.+.++....+.... .+.. .. ...+...++.+..+....+.++++++++.+|
T Consensus 169 ~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa 247 (302)
T TIGR00817 169 TIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSP 247 (302)
T ss_pred ccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 7 55 47899999999999999998876653211 0100 00 0011112222222222222455689999999
Q ss_pred ceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 152 VYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 152 ~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
++++++.+++|++++++|++++||++++.+++|+++++.|+++..+.|+
T Consensus 248 ~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 248 LTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred hHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998776543
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.85 E-value=2.5e-20 Score=164.34 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=124.2
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
+.+++|||+++++++|++++++|++++....+ +. ..+.++++++|++|++++|+..
T Consensus 117 ~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~--------------------~~----~~~~l~aa~~~a~~~i~~r~~~ 172 (296)
T PRK15430 117 GMIFLGERFRRMQWLAVILAICGVLVQLWTFG--------------------SL----PIIALGLAFSFAFYGLVRKKIA 172 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC--------------------Cc----cHHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999988753211 11 1468889999999999988864
Q ss_pred hhc-ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccch
Q 026763 82 REY-PEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPL 160 (233)
Q Consensus 82 ~~~-~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l 160 (233)
++. .+....+.|++.++.....+. ...+...+.. .+..+..+++.+.+.+.++|.+|++++++.|++++|++.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l 248 (296)
T PRK15430 173 VEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQ-NPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYI 248 (296)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 321 123444556666665443222 1111111111 11222334443334688999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhh
Q 026763 161 GIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 202 (233)
Q Consensus 161 ~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~ 202 (233)
+|++++++|++++||++++.+++|+++|+.|+.+........
T Consensus 249 ~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~ 290 (296)
T PRK15430 249 GPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYT 290 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877765544333
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=2.8e-20 Score=162.69 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=128.3
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
+.+++|||+++++++|+.+++.|++++.. ++. .. ....|+.+.++++++|++|+++.|+..
T Consensus 107 ~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~-~~~-----------------~~-~~~~g~~~~l~aal~~a~~~i~~k~~~ 167 (281)
T TIGR03340 107 ATLTLGETLSPLAWLGILIITLGLLVLGL-SRF-----------------AQ-HRRKAYAWALAAALGTAIYSLSDKAAA 167 (281)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhc-ccc-----------------cc-cchhHHHHHHHHHHHHHHhhhhccccc
Confidence 45789999999999999999999988753 111 11 124688899999999999999988764
Q ss_pred hhcCh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeecc
Q 026763 82 REYPE---ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK 158 (233)
Q Consensus 82 ~~~~~---~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~ 158 (233)
++.++ ....+.+++..+++.+.+.....+... +. ..+..+..+++.+.+++.++|.+|++++++.|+++++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~ 244 (281)
T TIGR03340 168 LGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALR 244 (281)
T ss_pred cchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeec
Confidence 43321 112333444444333333222222211 11 1123466778999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHH
Q 026763 159 PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYS 194 (233)
Q Consensus 159 ~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~l 194 (233)
+++|+++.++|++++||+++..+++|+++|+.|+++
T Consensus 245 ~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 245 NTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred ccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999875
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.82 E-value=2.3e-19 Score=160.25 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=147.5
Q ss_pred ceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026763 3 KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIR 82 (233)
Q Consensus 3 ~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~ 82 (233)
.+++|+|+++.+++|+++|++|+++++..+.. + .+....+.+...||++++.+++.||+|++++++..+
T Consensus 124 ~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~--~---------~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~ 192 (334)
T PF06027_consen 124 FIFLKRRYSWFHILGVLICIAGVVLVVVSDVL--S---------GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVK 192 (334)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhheeeeccc--c---------cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57899999999999999999999988654211 0 011124556799999999999999999999999998
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHH
Q 026763 83 EYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGI 162 (233)
Q Consensus 83 ~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~P 162 (233)
+.+ ...+.++-.++|.++..+...+.|.+.. -...++...........++..+-|.+....+++.+|+...+-.....
T Consensus 193 ~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i-~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd 270 (334)
T PF06027_consen 193 KAP-RVEFLGMLGLFGFIISGIQLAILERSGI-ESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSD 270 (334)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHheehhhh-hccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhh
Confidence 875 6788888889999998888877775421 01112223333333344466777889999999999999999999999
Q ss_pred HHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchh
Q 026763 163 VFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 201 (233)
Q Consensus 163 v~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~ 201 (233)
+++++++++++|+++++..++|.++|+.|+.+....+++
T Consensus 271 ~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 271 FYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 999999999999999999999999999999887665443
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.77 E-value=4.1e-18 Score=153.86 Aligned_cols=176 Identities=12% Similarity=0.045 Sum_probs=138.6
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
+++++|||+++++++++++.++|+++.+. +. .+ ....|+++.++|+++|+.|+++.|+..
T Consensus 158 s~~~l~ek~s~~~~l~l~l~v~Gv~l~~~--~~-----------------~~-~~~~G~~~~l~s~~~~a~~~i~~k~~~ 217 (350)
T PTZ00343 158 SILFLKQFLNLYAYLSLIPIVGGVALASV--KE-----------------LH-FTWLAFWCAMLSNLGSSLRSIFAKKTM 217 (350)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHheec--cc-----------------ch-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999988642 11 11 135799999999999999999999987
Q ss_pred hhcC------hhhHHHHHHHHHHHHHHHHHHHHhcCCC--Cccc----cCCchhHHHHHHHHHHHHHHHHHHHHH----h
Q 026763 82 REYP------EELMATFICCVFVTIQSTVVALIAERNP--NSWR----LKPDTELIAIGCSAFFAVALRSLAHTW----A 145 (233)
Q Consensus 82 ~~~~------~~l~~t~~~~~~g~l~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~gv~~s~ia~~l~~~----~ 145 (233)
++.+ ++.....+++.+|+++++|+....|... ..+. ......+..+++ .++.++++|++|+. +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~ 296 (350)
T PTZ00343 218 KNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYC 296 (350)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 6532 2445566678899999999887665421 0110 000112334555 46678999999995 9
Q ss_pred hhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 146 CHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 146 l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
+++.+|...++..++.|++++++|++++||++++.+++|+++++.|+++..+.
T Consensus 297 l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 297 LGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999886543
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.74 E-value=7.8e-17 Score=138.98 Aligned_cols=170 Identities=20% Similarity=0.259 Sum_probs=131.7
Q ss_pred eecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026763 4 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKN-WIIGGLVLAAGSFFLSLLYIVQTSIIR 82 (233)
Q Consensus 4 ~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~G~ll~l~aa~~~a~y~v~~~~~~~ 82 (233)
+++|||+++.+++|+.+++.|++++....+ .+.+ ...|+++.+.++++|++|.+..|+..
T Consensus 117 ~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~------------------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~- 177 (292)
T COG0697 117 LLLGERLSLLQILGILLALAGVLLILLGGG------------------GGGILSLLGLLLALAAALLWALYTALVKRLS- 177 (292)
T ss_pred HHccCCCcHHHHHHHHHHHHhHHheecCCC------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 456999999999999999999988753211 1111 46899999999999999999999887
Q ss_pred hcChhhHHHH-HHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchH
Q 026763 83 EYPEELMATF-ICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLG 161 (233)
Q Consensus 83 ~~~~~l~~t~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~ 161 (233)
+. ++..... +++. +. .+........... .+ .....+..+.+.|+++++++|.+|++++++.+++.++++.+++
T Consensus 178 ~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~--~~-~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 251 (292)
T COG0697 178 RL-GPVTLALLLQLL-LA-LLLLLLFFLSGFG--AP-ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLE 251 (292)
T ss_pred CC-ChHHHHHHHHHH-HH-HHHHHHHHhcccc--cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 44 3445444 4444 22 2222222222111 11 1224578889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 162 IVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 162 Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus 252 ~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 252 PVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999887766
No 13
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.62 E-value=2.3e-15 Score=114.37 Aligned_cols=125 Identities=20% Similarity=0.308 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026763 68 FFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACH 147 (233)
Q Consensus 68 ~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~ 147 (233)
++|+.+.++.|+..++.+ +...+++.+..+++ +.+.....+... ........+...++.+++++.+++.+|+++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 478999999999998874 88999999999997 666665555432 11112345777888999989999999999999
Q ss_pred ccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 148 KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 148 ~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
+.+++.++++.+++|+++.+++++++||++++.+++|+++++.|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 14
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.58 E-value=2.9e-14 Score=121.01 Aligned_cols=161 Identities=13% Similarity=0.046 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Q 026763 16 IGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICC 95 (233)
Q Consensus 16 ~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~ 95 (233)
+-+.+++.|+.++.-. +. +.+.-...|..+.+.++.||+.|++..+|..+..+ ...-++..+
T Consensus 123 vwvaLAvlGi~lL~p~-~~----------------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm 184 (292)
T COG5006 123 VWVALAVLGIWLLLPL-GQ----------------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGM 184 (292)
T ss_pred HHHHHHHHHHHhheec-cC----------------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHH
Confidence 3455788899877532 21 12233478999999999999999999999876443 456678999
Q ss_pred HHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCC
Q 026763 96 VFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGD 175 (233)
Q Consensus 96 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE 175 (233)
..++++.+|++..... +.-+. +.-...-+-.++++|++-|.+-.-+++|++....+..+.+||.++++.|+++|||
T Consensus 185 ~vAaviv~Pig~~~ag-~~l~~---p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e 260 (292)
T COG5006 185 LVAALIVLPIGAAQAG-PALFS---PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGE 260 (292)
T ss_pred HHHHHHHhhhhhhhcc-hhhcC---hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 9999999999874433 21111 1234455678999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHHHHhhc
Q 026763 176 TLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 176 ~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.+++.|++|+++|+.+..=..+.
T Consensus 261 ~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 261 TLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred CCCHHHHHHHHHHHHHHhccccc
Confidence 99999999999999876544443
No 15
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.55 E-value=3.5e-14 Score=125.12 Aligned_cols=172 Identities=14% Similarity=0.127 Sum_probs=127.2
Q ss_pred ceecccccCchh----hhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 026763 3 KLDLRVQSSLAK----SIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQT 78 (233)
Q Consensus 3 ~~~lke~~s~~~----~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~ 78 (233)
.+++|||.++++ ++|++++++|++++...++... ......+...|.++.++|+++|+.|.+..|
T Consensus 105 ~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~------------~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~ 172 (290)
T TIGR00776 105 VIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA------------GIKSEFNFKKGILLLLMSTIGYLVYVVVAK 172 (290)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999 9999999999887643211100 000002346799999999999999999988
Q ss_pred HHHhhcChhhHHH---HHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhh-ccCccee
Q 026763 79 SIIREYPEELMAT---FICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACH-KKGPVYV 154 (233)
Q Consensus 79 ~~~~~~~~~l~~t---~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~-~~~~~~~ 154 (233)
+. ++ +|.+.+ ++.++++++.+.+.. .... .+. ....+..++ .|++ +.++|.+|..+.+ +.+++.+
T Consensus 173 ~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~ 241 (290)
T TIGR00776 173 AF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATS 241 (290)
T ss_pred Hc--CC-CcceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhH
Confidence 75 35 467774 444445555444332 1111 111 112244444 8887 7999999999999 9999999
Q ss_pred eeccchHHHHHHHHHHHHhCCccchhhh----hhHHHHHHHHHHHhh
Q 026763 155 SMYKPLGIVFAIIMGVTLLGDTLYLGSV----VGATIVAFGFYSVIW 197 (233)
Q Consensus 155 s~~~~l~Pv~a~i~~~l~lgE~l~~~~i----iG~~LIl~Gv~lv~~ 197 (233)
+++..++|+++.+++++++||+.+..|+ +|+++|+.|+.+...
T Consensus 242 ~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 242 FSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 999999999887644
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.54 E-value=7.1e-14 Score=120.45 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=97.0
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
+.+++|||+++++++|++++++|++++...++ + . ..+.++++++|++|.+..|+..
T Consensus 114 a~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------------------~--~---~~~~l~aa~~~a~~~i~~~~~~ 169 (256)
T TIGR00688 114 GRVFLKERISRFQFIAVIIATLGVISNIVLKG-------------------S--L---PWEALVLAFSFTAYGLIRKALK 169 (256)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------C--c---hHHHHHHHHHHHHHHHHHhhcC
Confidence 46789999999999999999999988753211 0 1 1457889999999999988875
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHHHH---HhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeecc
Q 026763 82 REYPEELMATFICCVFVTIQSTVVAL---IAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK 158 (233)
Q Consensus 82 ~~~~~~l~~t~~~~~~g~l~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~ 158 (233)
++ + ..... .+.+.+.+... ....++......+...|..+++.|++ +.++|.+|++++|+.++++++++.
T Consensus 170 ~~-~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~ 241 (256)
T TIGR00688 170 NT-D-LAGFC-----LETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQ 241 (256)
T ss_pred CC-C-cchHH-----HHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHH
Confidence 42 2 22221 11122222221 11111110111112357778888876 899999999999999999999999
Q ss_pred chHHHHHHHHHHHH
Q 026763 159 PLGIVFAIIMGVTL 172 (233)
Q Consensus 159 ~l~Pv~a~i~~~l~ 172 (233)
|++|+++++++++.
T Consensus 242 yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 242 YIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
No 17
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.49 E-value=8.2e-13 Score=101.42 Aligned_cols=135 Identities=19% Similarity=0.153 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 026763 60 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRS 139 (233)
Q Consensus 60 ~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~ 139 (233)
.++.+++|+.|++-.++.|--.++. +|...|+.......+++..+.+..+.... .....+..|.-++..|+ .++.++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~-~~~~~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQA-GGEIGPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceec-ccccCcceehhhhHHHH-HHHHHH
Confidence 4789999999999999988777766 47777888888888888887776664322 11113456777777884 789999
Q ss_pred HHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhh
Q 026763 140 LAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 140 ~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
.+|++++++-.++++.++.-..|++++++|+++|||+++..+++|+.||.+|..++.+
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999999999999999999877543
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.44 E-value=2.1e-12 Score=114.25 Aligned_cols=189 Identities=15% Similarity=0.165 Sum_probs=141.0
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
+.+++|+|+++.+++++++-.+|+++....+.... ++ ..........|+++++++.++-+.+.+++++..
T Consensus 108 ~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~----~~------~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~ 177 (303)
T PF08449_consen 108 GVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS----SS------SNSSSFSSALGIILLLLSLLLDAFTGVYQEKLF 177 (303)
T ss_pred HHHhcCccccHHHHHHHHHHHhhHheeeecccccc----cc------cccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999988754322110 00 011112223499999999999999999999998
Q ss_pred hhcC-hhhHHHHHHHHHHHHHHHHHHHH--hcCCCCccc--cCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeee
Q 026763 82 REYP-EELMATFICCVFVTIQSTVVALI--AERNPNSWR--LKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSM 156 (233)
Q Consensus 82 ~~~~-~~l~~t~~~~~~g~l~~~~~~~~--~~~~~~~~~--~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~ 156 (233)
++++ ++.+...+..+++.+...+.... .++....+. ...+..+..++...+ +..++....++.+++.|+...++
T Consensus 178 ~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~ 256 (303)
T PF08449_consen 178 KKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTI 256 (303)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhh
Confidence 7764 46788899999999888877766 332111111 111122333333333 45677777888999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchh
Q 026763 157 YKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 201 (233)
Q Consensus 157 ~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~ 201 (233)
...+--+++++++++++|+++++.|++|.++++.|..+-...+++
T Consensus 257 v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k 301 (303)
T PF08449_consen 257 VTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK 301 (303)
T ss_pred HHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999876555443
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.42 E-value=5.9e-13 Score=118.50 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=138.9
Q ss_pred ceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026763 3 KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIR 82 (233)
Q Consensus 3 ~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~ 82 (233)
.++..||+++.|.++++++++|+++++..+ +.+. .+....+...|+++.+++|+.||+|+++.|+-..
T Consensus 204 ~if~~e~ft~sKllav~~si~GViiVt~~~--s~~~----------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~ 271 (416)
T KOG2765|consen 204 AIFPVERFTLSKLLAVFVSIAGVIIVTMGD--SKQN----------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIG 271 (416)
T ss_pred HHcCcchhhHHHHHHHHHhhccEEEEEecc--cccc----------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456689999999999999999998876432 1111 1123345689999999999999999999888765
Q ss_pred hcChhhH---HHHHHHHHHHHHHHHHHHHhcC-CCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeecc
Q 026763 83 EYPEELM---ATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK 158 (233)
Q Consensus 83 ~~~~~l~---~t~~~~~~g~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~ 158 (233)
+....+. +-.+..++.-+.+.|...+... ....+..+.......+++.++++++++-++|.+++-..+|-.+.+-+
T Consensus 272 ~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~Tlgm 351 (416)
T KOG2765|consen 272 DEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGM 351 (416)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeee
Confidence 5421222 2223334444444433333221 11122333344566778899999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchh
Q 026763 159 PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 201 (233)
Q Consensus 159 ~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~ 201 (233)
.++-..|++...++=|.++++.+++|.+.|++|.++++...+.
T Consensus 352 SltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 352 SLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred eEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 9999999999999999999999999999999999988766543
No 20
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.39 E-value=1.3e-11 Score=107.05 Aligned_cols=176 Identities=11% Similarity=0.103 Sum_probs=125.3
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
..+++|||+|+.|++++.++.+|+....+..|. .. ...+.=+++|+.|-.+.|+.
T Consensus 116 G~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~---------------------lp---wval~la~sf~~Ygl~RK~~- 170 (293)
T COG2962 116 GRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS---------------------LP---WVALALALSFGLYGLLRKKL- 170 (293)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC---------------------Cc---HHHHHHHHHHHHHHHHHHhc-
Confidence 468999999999999999999999988764331 11 33455678999999884443
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchH
Q 026763 82 REYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLG 161 (233)
Q Consensus 82 ~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~ 161 (233)
+ .+ +.+-.+.=++.-....+.+....+.+.+......+..+..++..|+ .|++...++..+-++++-+..+.+.|++
T Consensus 171 ~-v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~ 247 (293)
T COG2962 171 K-VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIE 247 (293)
T ss_pred C-Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 33 2222223222222222233223332221011112344666677777 5799999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhhhh
Q 026763 162 IVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKM 205 (233)
Q Consensus 162 Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~ 205 (233)
|..-.+++++++||+++..+.+..++|-.|+.+..+..-++.++
T Consensus 248 Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 248 PTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998887765544433
No 21
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.34 E-value=1.2e-13 Score=117.57 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=139.1
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
...++|.|+++.|+.|+++|..|+++++++ +.|+++++++.+...||++++++|.+||+.++..+.+.
T Consensus 122 sw~fLktrYrlmki~gV~iCi~GvvmvV~s------------DV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflv 189 (336)
T KOG2766|consen 122 SWFFLKTRYRLMKISGVVICIVGVVMVVFS------------DVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV 189 (336)
T ss_pred HHHHHHHHHhhheeeeEEeEecceEEEEEe------------eeccccccCCCCCccCcEEEEecceeeeeccccHHHHH
Confidence 357899999999999999999999988753 35667788889999999999999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHHhcCC-CCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccch
Q 026763 82 REYPEELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPL 160 (233)
Q Consensus 82 ~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l 160 (233)
|+.+ ..+++....++|+++..+- ++.+.. ... .+++..+...+. ..++...-|.+-...+|..+++...+-...
T Consensus 190 kn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~~t--l~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLT 264 (336)
T KOG2766|consen 190 KNAD-RVELMGFLGLFGAIISAIQ-FIFERHHVST--LHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLT 264 (336)
T ss_pred hcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccceee--EeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhH
Confidence 8875 6788889999999888776 555543 221 112122222222 444556667777788899999988888888
Q ss_pred HHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 161 GIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 161 ~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.-.++.+. ..+|-+.+|..++..+.+..|+++-..+
T Consensus 265 sDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 265 SDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred HHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 88899888 4566669999999999999998876433
No 22
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.25 E-value=1.1e-10 Score=102.98 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=109.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccc--cCCchhHHHHHHHHH
Q 026763 55 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWR--LKPDTELIAIGCSAF 132 (233)
Q Consensus 55 ~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gv 132 (233)
+...|.++.+++++.|+...+..|.. .+.+ |.++.+++++++.+.+.++.....+ ..... ......+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHHH
Confidence 35789999999999999999998764 5564 8899999999998877766543321 11100 0011222 2233566
Q ss_pred HHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhh
Q 026763 133 FAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 133 ~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
++.++.+.++++++++.+++.+++..+..|++..++++++++|+++..+++|.++.+.|+.++.+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999987653
No 23
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.18 E-value=5.8e-10 Score=97.53 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 026763 60 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRS 139 (233)
Q Consensus 60 ~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~ 139 (233)
.++.++++++||.+.+.+|+..++.+ + ...+.+..+++.+.++...... ...|+.. +..+......+.......+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLA-QVGWSRL-PATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhcc-cCCCCCc-chhhHHHHHHHHHHHHHHH
Confidence 36789999999999999998766532 3 3455566666666665543211 1122221 1233334444555678889
Q ss_pred HHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 140 LAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 140 ~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.++++++++.+++.++++.+..|+++.+++++++||+++..+++|.++++.|+.++...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999877643
No 24
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.17 E-value=1e-11 Score=106.41 Aligned_cols=184 Identities=15% Similarity=0.122 Sum_probs=125.0
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
.+++||||+++...+|.++.+.|+++++- +.+-+.+ ++...+.+.......|.+..+.+++..|.-.++.|++.
T Consensus 141 aw~~LkE~~t~~eaL~s~itl~GVVLIvR---PpFlFG~---~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iG 214 (346)
T KOG4510|consen 141 AWAFLKEPFTKFEALGSLITLLGVVLIVR---PPFLFGD---TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIG 214 (346)
T ss_pred HHHHHcCCCcHHHHHHHHHhhheEEEEec---CCcccCC---CccccccccccccCCchHHHHHhHhhhhhHHHHHHHhh
Confidence 46789999999999999999999998752 2211110 00000111112345677777777766665444558887
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchH
Q 026763 82 REYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLG 161 (233)
Q Consensus 82 ~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~ 161 (233)
|+.. ......|-.+++.+...+.....+. . +++. ...+|+-++.+|+++ .++..+.+.++|+-.+..+++..+.+
T Consensus 215 k~~h-~~msvsyf~~i~lV~s~I~~~~ig~-~-~lP~-cgkdr~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~d 289 (346)
T KOG4510|consen 215 KNAH-AIMSVSYFSLITLVVSLIGCASIGA-V-QLPH-CGKDRWLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTD 289 (346)
T ss_pred cccc-EEEEehHHHHHHHHHHHHHHhhccc-e-ecCc-cccceEEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHH
Confidence 7653 3333334444555444443332221 1 1221 224566667788865 78899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 162 IVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 162 Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
-++|.++-++++||.++++.+.|+++|+.+...+.
T Consensus 290 vvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 290 VVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 99999999999999999999999999997765544
No 25
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.12 E-value=9.2e-10 Score=94.81 Aligned_cols=137 Identities=11% Similarity=0.144 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCC---CccccCCchh-HHHHHHHHHH
Q 026763 58 IGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP---NSWRLKPDTE-LIAIGCSAFF 133 (233)
Q Consensus 58 ~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~gv~ 133 (233)
.|.++.++++++|+...+..|.. .+. +|.+++++.++++++.+.++.....+.. ..++...... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 47899999999999999998874 456 4899999999999988766654433210 0111001112 3345555654
Q ss_pred HHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhh
Q 026763 134 AVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 134 ~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
..+.+.++++++++.+++.++...+..|++++++++++++|+++..+++|.++.+.|+.++..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999887643
No 26
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.10 E-value=2.1e-10 Score=89.64 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHH
Q 026763 59 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALR 138 (233)
Q Consensus 59 G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia 138 (233)
|-++++.+.++-+...++-|+-.++.++ ...... . . ..... . .+ ....+++|+++.+++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~-~----~~~~~-~--~~-----------p~~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F-I----AALLA-F--GL-----------ALRAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H-H----HHHHH-H--hc-----------cHHHHHHHHHHHHHH
Confidence 5678888888888888887776666532 221111 0 0 00000 0 00 122467899999999
Q ss_pred HHHHHHhhhccCcceeeeccchHHHHHHHHHHH--HhCCccchhhhhhHHHHHHHHHHHhhcchh
Q 026763 139 SLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVT--LLGDTLYLGSVVGATIVAFGFYSVIWGQSE 201 (233)
Q Consensus 139 ~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l--~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~ 201 (233)
|.+|++++++.+++.+.++..+.++...+.++. ++||++++.+++|.++|++|++++.+++++
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999888888885 899999999999999999999998765443
No 27
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.6e-08 Score=85.60 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=135.8
Q ss_pred ceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026763 3 KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIR 82 (233)
Q Consensus 3 ~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~ 82 (233)
-++.|++++++|..-+++-++|+++.. ++..-.. .....++..|.++++++-..=+.-...|.++.+
T Consensus 130 Vl~~~KsY~w~kY~cVL~IV~GValFm-YK~~Kv~------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira 196 (337)
T KOG1580|consen 130 VLFAHKSYHWRKYCCVLMIVVGVALFM-YKENKVG------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRA 196 (337)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhh-ccccccC------------CCcccccchHHHHHHHHHHhcccchhHHHHHHH
Confidence 357889999999999999999998864 4422111 123445778999999998888888888888877
Q ss_pred hcC-hhhHHHHHHHHHHHHHHHHHHHHhcCC--CCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccc
Q 026763 83 EYP-EELMATFICCVFVTIQSTVVALIAERN--PNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKP 159 (233)
Q Consensus 83 ~~~-~~l~~t~~~~~~g~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~ 159 (233)
.+. ..-.++.+..+.+.+.+..-.+++++- ...+...-+..|.-+...++ ++.++.++.+.-+...||-.-|+...
T Consensus 197 ~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTT 275 (337)
T KOG1580|consen 197 SYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTT 275 (337)
T ss_pred hhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEee
Confidence 663 345677778888877665544444321 00000001234555555666 78999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 160 LGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 160 l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
.--.++++.++++++.+++..||+|..+++.++..=.
T Consensus 276 TRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 276 TRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 9999999999999999999999999999999987643
No 28
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.99 E-value=8.7e-09 Score=81.54 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------cChhhHHHHHHHHHHHHHHHHHHHHhcCCCC--cc-ccC------Cchh
Q 026763 59 GGLVLAAGSFFLSLLYIVQTSIIRE------YPEELMATFICCVFVTIQSTVVALIAERNPN--SW-RLK------PDTE 123 (233)
Q Consensus 59 G~ll~l~aa~~~a~y~v~~~~~~~~------~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~--~~-~~~------~~~~ 123 (233)
|.++.+.|.++.+++.++.|+..++ ..++..+..+....+.+.+.+..++.|.... .. ... .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6689999999999999999998766 2368899999999999999999888876431 00 000 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHH
Q 026763 124 LIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 195 (233)
Q Consensus 124 ~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv 195 (233)
+..++..|++. ..-....++.+++.+|...++...+-.+...++|++++||+++..+++|..+.+.|.++-
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 44555556544 455667789999999999999999999999999999999999999999999999998753
No 29
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.92 E-value=2.2e-08 Score=90.93 Aligned_cols=140 Identities=10% Similarity=0.067 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHH
Q 026763 57 IIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVA 136 (233)
Q Consensus 57 ~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ 136 (233)
..--+.++..-++|+.+.++.|...+.--+|..+.++-+.++++++.++....++... ++......+..+...|+++ .
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-LPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHH-H
Confidence 3445778888899999999999887654468889999999999999888766543211 1111113456666677777 4
Q ss_pred HHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHH------hCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 137 LRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTL------LGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 137 ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~------lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
+.+.++++++++.+++.++++.++.|++++++++++ ++|+++..+++|.++-++|+.++...
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 566789999999999999999999999999999999 69999999999999999999876653
No 30
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.87 E-value=5.9e-08 Score=85.39 Aligned_cols=132 Identities=13% Similarity=0.012 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 026763 60 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRS 139 (233)
Q Consensus 60 ~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~ 139 (233)
.+..+...+.|+...+..|...++. +|..++++.+.++++.+.++......... ....+......|++...+.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHPLP-----TLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999988777665 58999999999999888877554332111 12345556667777666778
Q ss_pred HHHHHhh-hccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 140 LAHTWAC-HKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 140 ~l~~~~l-~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.+++++. ++.+++.+++..++.|+++.+++++ ++|+++..+++|.++.+.|++++.+.
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 8889999 9999999999999999999999985 79999999999999999999887643
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.86 E-value=2.9e-08 Score=85.10 Aligned_cols=119 Identities=9% Similarity=0.002 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026763 70 LSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKK 149 (233)
Q Consensus 70 ~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~ 149 (233)
|+...+..|...++..++.....+..+.+.+.+.+..... . ....+...+..|.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---~------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---P------PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---c------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555666655444577888888888877776653221 1 112455556677777888999999999999
Q ss_pred CcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhh
Q 026763 150 GPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 150 ~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
+++.+++...++|+++.++++++++|++++.+++|..+.+.|+.++..
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999888654
No 32
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.81 E-value=1.8e-08 Score=76.62 Aligned_cols=76 Identities=11% Similarity=0.193 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 124 LIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 124 ~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
+...+..|+++...++.+|++++++.++ .+++...+.|+++.++++++++|+++..+++|.++++.|+.++.+.+.
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 3334455666666889999999999995 888999999999999999999999999999999999999999877654
No 33
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.78 E-value=1.1e-07 Score=83.84 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 026763 60 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRS 139 (233)
Q Consensus 60 ~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~ 139 (233)
.++.++++++|+...+..|...++. +|..++++.++++++.++++. ..+. . .+..+...|+......+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~--~~~~-~--------~~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFV--ARPK-V--------PLNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHh--cCCC-C--------chHHHHHHHHHHHHHHH
Confidence 3678899999999999999887776 489999999988876655432 1111 1 11122233444444455
Q ss_pred HHHHHhhhc-cCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 140 LAHTWACHK-KGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 140 ~l~~~~l~~-~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.+++.++++ .++..++++.++.|+++.++++++++|+++..+++|.++.+.|+.+..+.
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 567778887 67889999999999999999999999999999999999999999877643
No 34
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.77 E-value=1.4e-07 Score=81.31 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=113.2
Q ss_pred ceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026763 3 KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIR 82 (233)
Q Consensus 3 ~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~ 82 (233)
.+++|+|.++++|+++++-++|++++-...... .+.+++..........+...|.+++++++++-++-.++.++..|
T Consensus 62 ~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~---~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK 138 (244)
T PF04142_consen 62 VLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS---SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLK 138 (244)
T ss_pred HHHHHcccchhhHHHHHHHHHHHheeecCCccc---cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999998764321110 00000000000112345689999999999999999999999988
Q ss_pred hcChhh-HHHHHHHHHHHHHHHHHHHHhcCCC-C---ccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeec
Q 026763 83 EYPEEL-MATFICCVFVTIQSTVVALIAERNP-N---SWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMY 157 (233)
Q Consensus 83 ~~~~~l-~~t~~~~~~g~l~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~ 157 (233)
+.+.++ .-+..-+++|.++.++.....+... . .+...+...|..++. .+++=.+....+|+.+...=...
T Consensus 139 ~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~-----~a~gGllva~v~KyadnI~K~fa 213 (244)
T PF04142_consen 139 RSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL-----QAIGGLLVAFVLKYADNIVKGFA 213 (244)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH-----HHHhhHHHHHHHHHHhHHHHHHH
Confidence 764333 3333344455544444433322211 1 111111122333333 33344455667888887777777
Q ss_pred cchHHHHHHHHHHHHhCCccchhhhhhHHHH
Q 026763 158 KPLGIVFAIIMGVTLLGDTLYLGSVVGATIV 188 (233)
Q Consensus 158 ~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LI 188 (233)
..+.-+.+.+++++++|.+++....+|..+|
T Consensus 214 ~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 214 TAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 8888999999999999999999999998764
No 35
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.76 E-value=2.2e-07 Score=81.98 Aligned_cols=119 Identities=10% Similarity=0.089 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 026763 73 LYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPV 152 (233)
Q Consensus 73 y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~ 152 (233)
++++.|...++++.|+.++.+++.++++.+.+............ ....+..++..|++. .+.+.++++++++.+++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s 92 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKI---SSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS 92 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---CHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence 45567777777667999999999988876655411111111111 224566777778875 77789999999999999
Q ss_pred eeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHH
Q 026763 153 YVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 195 (233)
Q Consensus 153 ~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv 195 (233)
.+++...+.|++++++++++++|+++..+++|.++++.|+.+.
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999764
No 36
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.75 E-value=3.5e-07 Score=82.80 Aligned_cols=123 Identities=8% Similarity=-0.026 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcC-CCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026763 71 SLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER-NPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKK 149 (233)
Q Consensus 71 a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~ 149 (233)
..+++..|...+..|-|++++.++++++.+.+.+... ... ..+... .....+..++-+|++... .|...+.++++.
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~llp~gl~~~~-~~~~~~~sl~~~ 138 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIK-SLKLFLKNFLPQGLCHLF-VHFGAVISMGLG 138 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCC-CHHHHHHHHHHHHHHHHH-HHHHHHHHHhhc
Confidence 4456677888887765899999999999876554422 211 111111 012345667777887654 477778999999
Q ss_pred CcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 150 GPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 150 ~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
+++.+++...++|++++++++++++|+++..++++.+++++|+.+..
T Consensus 139 svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 139 AVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999999998765
No 37
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.74 E-value=2.2e-07 Score=81.95 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHH
Q 026763 58 IGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVAL 137 (233)
Q Consensus 58 ~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~i 137 (233)
.+.++.++++++|+...+..|...+..+ |..+.++-+.++++++.++. .. + .+... .+..++. +.+....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~-~-~~~~~---~~~~~~~-~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GF-P-RLRQF---PKRYLLA-GGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---cc-c-ccccc---cHHHHHH-HhHHHHH
Confidence 4568899999999999999998888875 89999999999988877642 11 1 11110 1111222 2223333
Q ss_pred HHHHHHHhhh----ccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 138 RSLAHTWACH----KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 138 a~~l~~~~l~----~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.+.+++.+++ ..++..++++.++.|+++.++++++++|+++..+++|.++.+.|+.+....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 3444555554 567788889999999999999999999999999999999999999877644
No 38
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.69 E-value=1.2e-07 Score=72.20 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 130 SAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 130 ~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
.++++.++++.+|.+++++.+.+.+.+...+.|+++.++|++++||++++.+++|.++++.|+.++.
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445667899999999999999999999999999999999999999999999999999999987754
No 39
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.60 E-value=1.3e-08 Score=90.49 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=135.2
Q ss_pred CcceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026763 1 MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSI 80 (233)
Q Consensus 1 ~e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~ 80 (233)
+|+++.+|++++..++.++.-..|+.+-.. + ...-...|.+..+++.++.+...++.+++
T Consensus 126 ~~~~~~~~~~s~~~~lsL~piv~GV~ias~--~------------------e~~fn~~G~i~a~~s~~~~al~~I~~~~l 185 (316)
T KOG1441|consen 126 LSVLLLGKTYSSMTYLSLLPIVFGVAIASV--T------------------ELSFNLFGFISAMISNLAFALRNILSKKL 185 (316)
T ss_pred HHHHHhCCCCcceEEEEEEEeeeeEEEeee--c------------------cccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999888888888865432 1 11124689999999999999999999998
Q ss_pred Hhh--c-ChhhHHHHHHHHHHHHHHH-HHHHHhcCCCC-cccc-CCchhHHHHHHHHHHHHHHHHHHHHHhhhccCccee
Q 026763 81 IRE--Y-PEELMATFICCVFVTIQST-VVALIAERNPN-SWRL-KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYV 154 (233)
Q Consensus 81 ~~~--~-~~~l~~t~~~~~~g~l~~~-~~~~~~~~~~~-~~~~-~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~ 154 (233)
.++ . -+++.+..++.-++.+.++ |.....+++.. .+.. .++......++..+ +...-....++.+.+.+|..-
T Consensus 186 l~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv-~~f~~Nls~f~~ig~tSalT~ 264 (316)
T KOG1441|consen 186 LTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSV-LAFLLNLSAFLVIGRTSALTY 264 (316)
T ss_pred hhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHH-HHHHHHHHHHHHHcccCchhh
Confidence 742 2 1578888888888888888 77666554322 0010 11122333344442 223333455788999999999
Q ss_pred eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhhhh
Q 026763 155 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKM 205 (233)
Q Consensus 155 s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~ 205 (233)
++...+--++.++.|+++++|++++.+..|+++.++|+++-.+.|.+++++
T Consensus 265 ~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 265 SVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred hhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999999999999999999999999999877766655543
No 40
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.56 E-value=2.8e-07 Score=77.90 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=111.0
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCcc---------ccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL---------VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSL 72 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~ 72 (233)
+....++|+++.|++++++...|++.-.+++.+.. ...+.++.++ ......+...|....+.+.++-+.
T Consensus 22 ~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~--~~~~~g~~~~g~~~~l~a~~~~~~ 99 (222)
T TIGR00803 22 NLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSA--KTLMFGNPVVGLSAVLSALLSSGF 99 (222)
T ss_pred cccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCc--cccccccHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999875322211000 0000000000 001112456777778778877777
Q ss_pred HHHHHHHHHhhcChhhHHHHHHH-HHHHHHHHHHHHHhcC-CC-Cccc--cCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026763 73 LYIVQTSIIREYPEELMATFICC-VFVTIQSTVVALIAER-NP-NSWR--LKPDTELIAIGCSAFFAVALRSLAHTWACH 147 (233)
Q Consensus 73 y~v~~~~~~~~~~~~l~~t~~~~-~~g~l~~~~~~~~~~~-~~-~~~~--~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~ 147 (233)
-.+++++..++.+.......++. +++.+ .......... +. ..+. ...+...+ .-++..+++..+..+.++
T Consensus 100 ~~~y~e~~~k~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~v~~vlk 174 (222)
T TIGR00803 100 AGVYFEKILKDGDTMFWSRNLQLPLFGLF-STFSVLLWSDGTLISNFGFFIGYPTAVW----IVGLLNVGGGLCIGGVVR 174 (222)
T ss_pred hHHHHHHcccCCCCchHHHHHHHHHHHHH-HHHHHHhhcccchhhccCcccCCchHHH----HHHHHHHhcCceeeehhH
Confidence 77777776555432111111222 22222 1111111111 10 0111 00111111 122345667778999999
Q ss_pred ccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHH
Q 026763 148 KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYS 194 (233)
Q Consensus 148 ~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~l 194 (233)
+.++...+....++++++.+++++++||+++..+++|+.+++.|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 175 YADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 99999999999999999999999999999999999999999998764
No 41
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.56 E-value=3.1e-07 Score=80.32 Aligned_cols=187 Identities=17% Similarity=0.148 Sum_probs=134.8
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
..+..|+|++..+.+-..+--.|+-+....+..+ ++ ......+..+|.+++...-+.=+.-+..|.++.
T Consensus 127 g~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~-----s~------~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf 195 (327)
T KOG1581|consen 127 GTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD-----SS------SKSGRENSPIGILLLFGYLLFDGFTNATQDSLF 195 (327)
T ss_pred HHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC-----Cc------cccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh
Confidence 4567899999999988877778886654332211 00 112334668999999999888888888899888
Q ss_pred hhcC-hhhHHHHHHHHHHHHHHHHHHHHhcCCCCccc--cCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeecc
Q 026763 82 REYP-EELMATFICCVFVTIQSTVVALIAERNPNSWR--LKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK 158 (233)
Q Consensus 82 ~~~~-~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~ 158 (233)
+++. ++..++.+..+++++.........++.....+ ..-+..+.-++.... +.+++..+.++-+++.|+-.-+.++
T Consensus 196 ~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ 274 (327)
T KOG1581|consen 196 KKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIM 274 (327)
T ss_pred ccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHH
Confidence 7643 46788888888888776665332222211111 111223444444444 4578899999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 159 PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 159 ~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
..-=.++++++.+++|.++++.|++|..+++.|+++-..-++
T Consensus 275 ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~ 316 (327)
T KOG1581|consen 275 TTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKK 316 (327)
T ss_pred HHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHH
Confidence 999999999999999999999999999999999987544333
No 42
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.54 E-value=4.7e-06 Score=74.43 Aligned_cols=185 Identities=14% Similarity=0.115 Sum_probs=116.4
Q ss_pred eecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026763 4 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIRE 83 (233)
Q Consensus 4 ~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~ 83 (233)
++||||.++.||..+++-++|+.++-...... + . +.......+...|....+.++..-+.-.++-+++.|+
T Consensus 138 l~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~-~-~-------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~ 208 (345)
T KOG2234|consen 138 LILRRKLSRLQWMALVLLFAGVALVQLPSLSP-T-G-------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKG 208 (345)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC-C-C-------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999998874211110 0 0 0012334567899999999999999988998998876
Q ss_pred cChhhHHHHHHH-HHHHHHHHHHHHHhcCCCCcc----ccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeecc
Q 026763 84 YPEELMATFICC-VFVTIQSTVVALIAERNPNSW----RLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK 158 (233)
Q Consensus 84 ~~~~l~~t~~~~-~~g~l~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~ 158 (233)
...++-+--.++ ++|.++.+......+.....| ...+...|..++-.++.+-.++ ..+|+.+--.=....
T Consensus 209 s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs-----~v~KyADnIlK~f~~ 283 (345)
T KOG2234|consen 209 SNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVS-----LVMKYADNILKGFST 283 (345)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhccchhHH-----HHHHHhHHHHHHHHH
Confidence 433333322333 334433333332232211112 1222334555555555443333 344444433333444
Q ss_pred chHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhh
Q 026763 159 PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 202 (233)
Q Consensus 159 ~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~ 202 (233)
.+.-+++.+.++.++|-+++....+|..+|+.++++....+.+.
T Consensus 284 s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 284 SVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 47778889999999999999999999999999998877555544
No 43
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.51 E-value=2.6e-06 Score=73.82 Aligned_cols=206 Identities=14% Similarity=0.113 Sum_probs=128.5
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
..+.+|+|++.+|+..+++-.+|+++-+.....+...- .+.--+++.......|..|..++..|-+.-|..-++++..-
T Consensus 109 g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~-~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y 187 (330)
T KOG1583|consen 109 GWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSK-LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTY 187 (330)
T ss_pred HHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhh-hcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999987654333222110 00000111223344578999999999999999888888877
Q ss_pred hhcC-hhhHHHHHHHHHHHHHHHHHHH--------HhcCCC---CccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026763 82 REYP-EELMATFICCVFVTIQSTVVAL--------IAERNP---NSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKK 149 (233)
Q Consensus 82 ~~~~-~~l~~t~~~~~~g~l~~~~~~~--------~~~~~~---~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~ 149 (233)
|++. ++-+..+|+-+..-..++...- ....+. +.....-+..|..+++..+ ..-++---.+..-.+.
T Consensus 188 ~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L-~Qy~CikgVy~L~te~ 266 (330)
T KOG1583|consen 188 QKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL-TQYFCIKGVYILTTET 266 (330)
T ss_pred HHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH-HHHHHHHhhhhhhcee
Confidence 7764 4567777877665544333321 000000 0111112334555544332 2222222223334455
Q ss_pred CcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHH--hhcchhhhhhhccc
Q 026763 150 GPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV--IWGQSEEEKMIDDK 209 (233)
Q Consensus 150 ~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv--~~~~~~~~~~~~~~ 209 (233)
.+-.+++...+--.++.++|.+.+..++++++++|.++++.|-.+. .|.+.|..|.++++
T Consensus 267 ~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~~~k~~~kk 328 (330)
T KOG1583|consen 267 SSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPKATKGAIKK 328 (330)
T ss_pred cceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 6777888888999999999999999999999999999999996654 35555544443333
No 44
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.49 E-value=4.4e-06 Score=71.76 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHH
Q 026763 56 WIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAV 135 (233)
Q Consensus 56 ~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s 135 (233)
...+....+.+++.|+......+...+...+...........+.+...+... .+. ....+.. ..+......+.+..
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~~~~~~ 80 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LEP-RGLRPAL--RPWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhc-ccccccc--cchHHHHHHHHHHH
Confidence 4677888888999999998888877654222344444455555555222221 111 0011111 11334455677778
Q ss_pred HHHHHHHHHhhhccCcceeeeccchHHHHHHHHHH-HHhCCccchhhhhhHHHHHHHHHHHhhcchh
Q 026763 136 ALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGV-TLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 201 (233)
Q Consensus 136 ~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~-l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~ 201 (233)
...+.+|+.++++.++..+++..+..|++..++++ ++++|+++..+++|..+.+.|+.++.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 88999999999999999999999999999999997 7779999999999999999999988776543
No 45
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.37 E-value=5.7e-06 Score=72.16 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=110.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccc-cCCchhHHHHHHHHHHH
Q 026763 56 WIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWR-LKPDTELIAIGCSAFFA 134 (233)
Q Consensus 56 ~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gv~~ 134 (233)
...|.++.+.|-+.|+..-.+.|-+ +..+ +.++.++-.+.+..++..+.....+....++ ...+..+......++..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4679999999999999988876654 5554 6788888888888777766655544322111 12234566666666654
Q ss_pred HHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 135 VALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 135 s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.+-+.+|.|++.+-.+-.+|.=.+++|++-+++|.++++|+++..|++..++..+||..-.|.
T Consensus 83 -~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 83 -GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred -HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999876553
No 46
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.31 E-value=6.2e-06 Score=72.72 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHH
Q 026763 59 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALR 138 (233)
Q Consensus 59 G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia 138 (233)
|.++.++++++|+..-+..|+.. ..+ +.... .+.+|++.+..+......+. ... ...+..-+..|+ .=+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~--~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FWA--LSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--ccc--cHHHHHHHHHHH-HHHhh
Confidence 56889999999999888877754 332 22222 45667776666555544221 110 111221111222 24667
Q ss_pred HHHHHHhhhccCcceeeeccc-hHHHHHHHHHHHHhCCccchhh----hhhHHHHHHHHHHHhhc
Q 026763 139 SLAHTWACHKKGPVYVSMYKP-LGIVFAIIMGVTLLGDTLYLGS----VVGATIVAFGFYSVIWG 198 (233)
Q Consensus 139 ~~l~~~~l~~~~~~~~s~~~~-l~Pv~a~i~~~l~lgE~l~~~~----iiG~~LIl~Gv~lv~~~ 198 (233)
..+|+.++++.|.+.+-++.+ ++|++..+++.+++||+.+..+ ++|.++++.|++++...
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 799999999999999999888 8999999999999999999999 99999999998886444
No 47
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.30 E-value=9.5e-06 Score=70.30 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=128.1
Q ss_pred ceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026763 3 KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKN-WIIGGLVLAAGSFFLSLLYIVQTSII 81 (233)
Q Consensus 3 ~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~G~ll~l~aa~~~a~y~v~~~~~~ 81 (233)
.++.+.|+...-..+..+-..|+++.++.+.. .+++ ...|..++-+|-++=|+--.+|++..
T Consensus 151 ifIqGkRY~v~d~~aA~lm~lGli~FTLADs~-----------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m 213 (367)
T KOG1582|consen 151 IFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQ-----------------TSPNFNLIGVMMISGALLADAVIGNVQEKAM 213 (367)
T ss_pred eeeccccccHHHHHHHHHHHHHHHhhhhcccc-----------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHH
Confidence 35667789999999988999999887764321 1222 25788888888888888778888888
Q ss_pred hhcC-hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcccc--CCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeecc
Q 026763 82 REYP-EELMATFICCVFVTIQSTVVALIAERNPNSWRL--KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK 158 (233)
Q Consensus 82 ~~~~-~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~ 158 (233)
+.++ +..++.+++..+|.+.++.....+++-.+.|.. .-+....+..+.=-..+-++-....-.++-.|+..++...
T Consensus 214 ~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvT 293 (367)
T KOG1582|consen 214 KMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVT 293 (367)
T ss_pred hhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHH
Confidence 7765 345677788888888777666555543333431 1111122222111123344444555567778999999999
Q ss_pred chHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcc
Q 026763 159 PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 159 ~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
..--.+++++|++++..++|....-|+.+|++|+++-...+
T Consensus 294 TaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 294 TARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999977655
No 48
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=1.5e-05 Score=70.43 Aligned_cols=179 Identities=9% Similarity=0.072 Sum_probs=133.5
Q ss_pred CcceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026763 1 MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSI 80 (233)
Q Consensus 1 ~e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~ 80 (233)
.|.+++|.|+++..+..+....+|...-... . . .-...|-.|++...++-+.|.+..|+.
T Consensus 120 ~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~-d------------------~-sf~~~gY~w~~~n~~~~a~~~v~~kk~ 179 (314)
T KOG1444|consen 120 GEVLFFGKRPSNKVWASVFAMIIGSVAAAFT-D------------------L-SFNLRGYSWALANCLTTAAFVVYVKKS 179 (314)
T ss_pred hHHhhcCcCchhhHHHHHHHHHHHHHhhccc-c------------------c-eecchhHHHHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999988888888654321 1 0 112348999999999999999998887
Q ss_pred HhhcC-hhhHHHHHHHHHHHHHHHHHHHHhcCCC------CccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcce
Q 026763 81 IREYP-EELMATFICCVFVTIQSTVVALIAERNP------NSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVY 153 (233)
Q Consensus 81 ~~~~~-~~l~~t~~~~~~g~l~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~ 153 (233)
.+... ....+..|..++...++....+++++.. +.|.. ...+..+...++.+-++.|. -.|..+..+++.
T Consensus 180 vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~~lScv~gf~isy~-s~~ct~~~SAtT 256 (314)
T KOG1444|consen 180 VDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVMLLSCVMGFGISYT-SFLCTRVNSATT 256 (314)
T ss_pred hccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHHHHHHHHHHHHHHH-HHHHHhhccccc
Confidence 65421 2456778999999888888887777522 11221 23466777888888777774 458999999999
Q ss_pred eeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhh
Q 026763 154 VSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 202 (233)
Q Consensus 154 ~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~ 202 (233)
.++.....-..+.+...++.|++.++..++|..+-++|-.+....++++
T Consensus 257 ~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~ 305 (314)
T KOG1444|consen 257 TTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRK 305 (314)
T ss_pred eeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhh
Confidence 9999977888888888888999999999999999887755544444433
No 49
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.19 E-value=4.8e-06 Score=64.19 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhhhccCcceeeecc-chHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcc
Q 026763 131 AFFAVALRSLAHTWACHKKGPVYVSMYK-PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 131 gv~~s~ia~~l~~~~l~~~~~~~~s~~~-~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
.+.+-+++|+++.+++|+++.+.+-... .+--+.+.+.+++++||++++.+++|..+|+.|+..++...
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3444578899999999999998887775 58888999999999999999999999999999998876544
No 50
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.16 E-value=4.6e-05 Score=67.09 Aligned_cols=127 Identities=6% Similarity=-0.078 Sum_probs=95.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHH
Q 026763 56 WIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAV 135 (233)
Q Consensus 56 ~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s 135 (233)
...|..++++++++|+......|...++.+ |..+.++.++++++++.++...... .+ ....+...+..|+. .
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~---~~---~~~~~~~~~~~g~~-~ 81 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL---RF---AKEQRLPLLFYGVS-L 81 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc---cC---CHHHHHHHHHHHHH-H
Confidence 467899999999999999999998887775 8899999999999888765422111 11 11344445455654 4
Q ss_pred HHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 136 ALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 136 ~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
.+.+.++++++++.+++.++...+..|+++.+++. |++.. ..+.++.+.|++++.
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLL 136 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheee
Confidence 66678899999999999999999999999998873 55543 455667778887654
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.15 E-value=4.2e-05 Score=66.67 Aligned_cols=166 Identities=13% Similarity=0.156 Sum_probs=106.5
Q ss_pred eecccccCchhhh----HHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 026763 4 LDLRVQSSLAKSI----GTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTS 79 (233)
Q Consensus 4 ~~lke~~s~~~~~----G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~ 79 (233)
++|+|+.+...++ ++++-++|+++....+..+ +..+...+...|.+.++++.+.|..|.+..|.
T Consensus 92 ~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~------------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 92 LFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKS------------DKSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred hhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccc------------cccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5788988866653 5666677776654321110 00112345678999999999999999999665
Q ss_pred HHhhcChhhHHHH---HHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeee
Q 026763 80 IIREYPEELMATF---ICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSM 156 (233)
Q Consensus 80 ~~~~~~~~l~~t~---~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~ 156 (233)
. +. ++..... ..++.+++.+..+. +.... .+ ..|..++ .|++ =.++-.++..+.++.|.+.+-.
T Consensus 160 ~--~~-~~~~~~lPqaiGm~i~a~i~~~~~---~~~~~-~k----~~~~nil-~G~~-w~ignl~~~is~~~~G~a~af~ 226 (269)
T PF06800_consen 160 F--HV-SGWSAFLPQAIGMLIGAFIFNLFS---KKPFF-EK----KSWKNIL-TGLI-WGIGNLFYLISAQKNGVATAFT 226 (269)
T ss_pred c--CC-ChhHhHHHHHHHHHHHHHHHhhcc---ccccc-cc----chHHhhH-HHHH-HHHHHHHHHHhHHhccchhhhh
Confidence 3 23 2444333 34445554444332 22111 11 1122222 2221 2567778899999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCccchh----hhhhHHHHHHHHHH
Q 026763 157 YKPLGIVFAIIMGVTLLGDTLYLG----SVVGATIVAFGFYS 194 (233)
Q Consensus 157 ~~~l~Pv~a~i~~~l~lgE~l~~~----~iiG~~LIl~Gv~l 194 (233)
+.-+.++++.+.|.++|||+=+.. .++|.++|+.|..+
T Consensus 227 lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 227 LSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999986644 56788888877543
No 52
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.07 E-value=1.3e-05 Score=69.81 Aligned_cols=182 Identities=10% Similarity=0.098 Sum_probs=117.2
Q ss_pred eecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026763 4 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIRE 83 (233)
Q Consensus 4 ~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~ 83 (233)
-++++++..++|+|+....+|++.+... +... + +++ -...++.+.|+++++++-+.-|.-.++.+|..++
T Consensus 132 ~~Ln~ti~~~qWl~i~fv~lGlviVg~~---d~~~-~--~~p----~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~ 201 (372)
T KOG3912|consen 132 MFLNRTITGRQWLGILFVSLGLVIVGSL---DVHL-V--TDP----YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKK 201 (372)
T ss_pred HHHhcccchhhHHHHHHHHhhhheeeee---eccc-c--cCC----ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4789999999999999999999876321 1100 0 000 0122456899999999999999999987777765
Q ss_pred cC-hhhHHHHHHHHHHHHHHHHHHHHhc----C-----CCCc-cccCCchhHH-----HHHHHHHHHHHHHHHHHHH---
Q 026763 84 YP-EELMATFICCVFVTIQSTVVALIAE----R-----NPNS-WRLKPDTELI-----AIGCSAFFAVALRSLAHTW--- 144 (233)
Q Consensus 84 ~~-~~l~~t~~~~~~g~l~~~~~~~~~~----~-----~~~~-~~~~~~~~~~-----~l~~~gv~~s~ia~~l~~~--- 144 (233)
+. +|+....|+.++|-+++.+...... . ++.. |.. +...|- -.++..+.+..++-.++|.
T Consensus 202 ~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD-~~~~~~~~~e~p~l~val~~~~vSiAffNfaGl 280 (372)
T KOG3912|consen 202 SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLED-WGDAFAALQESPSLAVALIGFTVSIAFFNFAGL 280 (372)
T ss_pred ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhh-HHHHHHHhcCCchhHHHHhhhhhheeeeeehhh
Confidence 53 6899999999999666655544321 1 1110 100 000010 0123333333333333332
Q ss_pred -hhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 145 -ACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 145 -~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
--+..+++.-.+.-.+-..+-=+++.....|.++..|+.|..+.+.|.++.+
T Consensus 281 sitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 281 SITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344566666666666666666777778889999999999999999988754
No 53
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.97 E-value=0.00012 Score=64.85 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhcC-h--hhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026763 72 LLYIVQTSIIREYP-E--ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHK 148 (233)
Q Consensus 72 ~y~v~~~~~~~~~~-~--~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~ 148 (233)
.|.++++++.++.. . +..+++.|+++.++...+.......... .. ..+......++ ...++..+-++++++
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~-~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-RK----IPLKKYAILSF-LFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-Cc----ChHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 35567777765432 3 6788889998888776666554441111 11 11222333333 346677889999999
Q ss_pred cCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhhhhh
Q 026763 149 KGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMI 206 (233)
Q Consensus 149 ~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~~ 206 (233)
++...-.++....|+..+++++++++++.+..++++.+++.+|+.+....+.++.++.
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~ 145 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS 145 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence 9999999999999999999999999999999999999999999998777655444433
No 54
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.95 E-value=2.4e-05 Score=59.45 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhhccCcceeeec-cchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcc
Q 026763 133 FAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 133 ~~s~ia~~l~~~~l~~~~~~~~s~~-~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
++-+++|.++..++++++.+.+-.. .-+--+.+.+.|++++||++++.+++|+.+|+.|+...+..+
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3446778888888888887776555 446778889999999999999999999999999999876544
No 55
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.93 E-value=0.00016 Score=65.15 Aligned_cols=139 Identities=13% Similarity=0.103 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHH
Q 026763 57 IIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVA 136 (233)
Q Consensus 57 ~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ 136 (233)
..|.++.++-+.+-.....+.++ +...|...+.+.++.-.+...++.. ..++...+.......|+..+.++++ =+
T Consensus 16 ~lgQ~lsl~~~~t~~~s~~l~~~---~~~~P~~Qs~~~Y~~l~~vy~~~~~-~r~~~~~~~~~~~~~~w~y~lla~~-Dv 90 (334)
T PF06027_consen 16 LLGQVLSLCITGTGTFSSLLANK---GVNIPTFQSFFNYVLLALVYTPILL-YRRGFKKWLKVLKRPWWKYFLLALL-DV 90 (334)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc---CccCcHHHHHHHHHHHHHHHhhhhh-hccccccchhhcchhHHHHHHHHHH-HH
Confidence 45556666655555555555444 1223555555555544444443322 2221111111111334444455654 46
Q ss_pred HHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 137 LRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 137 ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
.+-++++.+.++.+.+.+.++....-++++++++++|+|+.++.|++|.++.+.|+.++.....
T Consensus 91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 7899999999999999999999999999999999999999999999999999999988776643
No 56
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.89 E-value=0.00028 Score=55.72 Aligned_cols=131 Identities=13% Similarity=0.136 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 026763 60 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRS 139 (233)
Q Consensus 60 ~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~ 139 (233)
.++.+.+...-++...+..++.++..+|+..+.+.+..|.+.+..+..+.++. ++....+.+|+..+ -|+++ ++--
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~lG-~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLLG-VFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHHH-HHHH
Confidence 46677788888888888888887765588888899999999888887777653 12111112333322 34443 5556
Q ss_pred HHHHHhhhccCcceeeeccch-HHHHHHHHHHH----HhCCccchhhhhhHHHHHHHHHH
Q 026763 140 LAHTWACHKKGPVYVSMYKPL-GIVFAIIMGVT----LLGDTLYLGSVVGATIVAFGFYS 194 (233)
Q Consensus 140 ~l~~~~l~~~~~~~~s~~~~l-~Pv~a~i~~~l----~lgE~l~~~~iiG~~LIl~Gv~l 194 (233)
.+..+.++|+|++.+..+... |-+.+.++..+ .-.+++++.+++|.++++.|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 778889999999888777665 77777777776 23567999999999999999863
No 57
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.83 E-value=7e-05 Score=63.35 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=130.6
Q ss_pred CcceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026763 1 MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSI 80 (233)
Q Consensus 1 ~e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~ 80 (233)
+|-++++.|.+-......++.+.--+.-.+.+-+.. .......+.|-+|+...+++-+.|.+..|+.
T Consensus 111 gEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~-------------~~~~~~lN~GY~Wm~~NclssaafVL~mrkr 177 (309)
T COG5070 111 GEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQAS-------------AFKAQILNPGYLWMFTNCLSSAAFVLIMRKR 177 (309)
T ss_pred hHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHH-------------HHHhcccCCceEEEehhhHhHHHHHHHHHHh
Confidence 366788888887777666665555443332110000 0112245789999999999999999998876
Q ss_pred HhhcC-hhhHHHHHHHHHHHHHHHHHHHHhcCCCC-cccc-CCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeec
Q 026763 81 IREYP-EELMATFICCVFVTIQSTVVALIAERNPN-SWRL-KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMY 157 (233)
Q Consensus 81 ~~~~~-~~l~~t~~~~~~g~l~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~ 157 (233)
.+-.. ....-++|..+.+-.+++..++++|.+.+ .... -......++...|+..-++.| +-.|.++-.+.+.-|+.
T Consensus 178 i~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy-~saWcvrVtSSTtySMv 256 (309)
T COG5070 178 IKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISY-CSAWCVRVTSSTTYSMV 256 (309)
T ss_pred hcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhh-ccceeEeehhhhHHHHH
Confidence 54211 23566789999999888888888876422 1111 112334566667775545544 77899999999999999
Q ss_pred cchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhhhhhccccc
Q 026763 158 KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMIDDKDI 211 (233)
Q Consensus 158 ~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~~~~~~~ 211 (233)
..++-.-.++.|.+++||+.+...+....+-+..-.+ ..-.+++|+|.|+|+
T Consensus 257 GALNKlp~alaGlvffdap~nf~si~sillGflsg~i--Yavaks~k~q~q~~~ 308 (309)
T COG5070 257 GALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI--YAVAKSKKQQNQKDP 308 (309)
T ss_pred HHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCC
Confidence 9999999999999999999999988887776543322 223334445555553
No 58
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=4.8e-05 Score=66.09 Aligned_cols=193 Identities=13% Similarity=0.031 Sum_probs=128.3
Q ss_pred ceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026763 3 KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIR 82 (233)
Q Consensus 3 ~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~ 82 (233)
.+++|+|-+.....++++-+.|--+ |.+-. ...+.-...|.++...|.++-|+..+.+|+...
T Consensus 147 yvllkqkTs~~~~~~C~lIi~GF~l-----GvdqE------------~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~ 209 (347)
T KOG1442|consen 147 YVLLKQKTSFFALGCCLLIILGFGL-----GVDQE------------GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLP 209 (347)
T ss_pred Hhhcccccccccceeehhheehhee-----ccccc------------cccCccchhhhHHHHHHHHHHHHHHHhhheecc
Confidence 5778888888766665555444321 11000 011223468999999999999999999987654
Q ss_pred hcC-hhhHHHHHHHHHHHHHHHHHHHHhcCCCCccc---cCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeecc
Q 026763 83 EYP-EELMATFICCVFVTIQSTVVALIAERNPNSWR---LKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK 158 (233)
Q Consensus 83 ~~~-~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~ 158 (233)
... .-..+++|..+.+.+.++|...+.++-...+. .+....|..+...|+++-.++|. -.|-+|-.+|-.=.+..
T Consensus 210 ~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyv-Tg~QIK~TSplThnISg 288 (347)
T KOG1442|consen 210 PVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYV-TGWQIKVTSPLTHNISG 288 (347)
T ss_pred cccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhe-eeEEEEecccceeeecH
Confidence 332 24577889999999888887766543111111 11223467777778877666653 23455555555444444
Q ss_pred chHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhhhhhccccccc
Q 026763 159 PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMIDDKDIDS 213 (233)
Q Consensus 159 ~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~~~~~~~~~ 213 (233)
.---..=.++++.+++|..+..-|-|-++|+.|-....+.|+.|++++.++.+..
T Consensus 289 TAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~~ 343 (347)
T KOG1442|consen 289 TAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSPA 343 (347)
T ss_pred hHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCcc
Confidence 4444555688899999999999999999999998888888888888876665543
No 59
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.65 E-value=4.4e-05 Score=67.82 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhhccCcceeeeccch-HHHHHHHHHHHHhCCc--cch----hhhhhHHHHHHHHHHHhhcch
Q 026763 132 FFAVALRSLAHTWACHKKGPVYVSMYKPL-GIVFAIIMGVTLLGDT--LYL----GSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 132 v~~s~ia~~l~~~~l~~~~~~~~s~~~~l-~Pv~a~i~~~l~lgE~--l~~----~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
+.+...-....|+++++.+++.+.+..+. -..++++-|.++++|. .+. ....|..+++.|+++....|+
T Consensus 220 v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 220 VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 44556667778999999999999888776 4567777778888885 444 345667778888877654443
No 60
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.64 E-value=0.00073 Score=51.23 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhccCcceeeec-cchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 134 AVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 134 ~s~ia~~l~~~~l~~~~~~~~s~~-~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
+-+++|++...++|++|...+-.. .-+--+.+.+.+++++||++++.+++|..+|+.|+...+
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 346788899999999988766444 446778889999999999999999999999999998753
No 61
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00016 Score=54.36 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhccCccee-eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 135 VALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 135 s~ia~~l~~~~l~~~~~~~~-s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
-.++|.+..+++|+++...+ +++.-+--+.+++.|++++||++++.+++|..++++|+...+..
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 35678888888888876655 44555677888999999999999999999999999999876654
No 62
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.60 E-value=0.00079 Score=58.79 Aligned_cols=108 Identities=14% Similarity=0.190 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeecc-chHHHHHHHHHHH
Q 026763 93 ICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYK-PLGIVFAIIMGVT 171 (233)
Q Consensus 93 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~-~l~Pv~a~i~~~l 171 (233)
..+.+|++.+.++..+..++ .++. +...++.-+..|++ =.++...++++.++.|.+++-++. -+|-+.+.+.+++
T Consensus 17 lG~t~Gali~alv~~~~~~p--~~~~-~~~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~ 92 (269)
T PF06800_consen 17 LGTTIGALIFALVVFLFRQP--AFSM-SGTSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVL 92 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCC--Ccch-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHh
Confidence 44456666666655554432 2221 01234433444553 477899999999999999999998 5677889999999
Q ss_pred HhCCccchhhh----hhHHHHHHHHHHHhhcchhhhh
Q 026763 172 LLGDTLYLGSV----VGATIVAFGFYSVIWGQSEEEK 204 (233)
Q Consensus 172 ~lgE~l~~~~i----iG~~LIl~Gv~lv~~~~~~~~~ 204 (233)
+|||--+..+. ++.++++.|+++..++++++.+
T Consensus 93 ~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 93 FFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99997765554 4778888999887776555443
No 63
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.60 E-value=0.0002 Score=53.91 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhhccCcceeee-ccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhh
Q 026763 134 AVALRSLAHTWACHKKGPVYVSM-YKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 134 ~s~ia~~l~~~~l~~~~~~~~s~-~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
+-+++|++...++|++|...+-. +.-+--+.+.+.|++++||++++.+++|..+|+.|+...+.
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 44677888888888888766543 44477888899999999999999999999999999987643
No 64
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.60 E-value=0.0012 Score=58.33 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=111.0
Q ss_pred cccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Q 026763 8 VQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-- 85 (233)
Q Consensus 8 e~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~-- 85 (233)
||+++.-..-+++-.+|+++++. +. .+-...|-.++++|+++-++-=.+++.+.++.|
T Consensus 134 Ek~~w~L~l~v~lI~~Glflft~-Ks-------------------Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~ 193 (349)
T KOG1443|consen 134 EKFRWALVLIVLLIAVGLFLFTY-KS-------------------TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSA 193 (349)
T ss_pred HHHHHHHHHHHHHHhhheeEEEe-cc-------------------cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccc
Confidence 77777777777777777776653 32 112467888888888777765555666666543
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhcCCCC-----ccccCCc-hhHHHHHHHHHHHHHHHH---HHHHHhhhccCccee
Q 026763 86 --EELMATFICCVFVTIQSTVVALIAERNPN-----SWRLKPD-TELIAIGCSAFFAVALRS---LAHTWACHKKGPVYV 154 (233)
Q Consensus 86 --~~l~~t~~~~~~g~l~~~~~~~~~~~~~~-----~~~~~~~-~~~~~l~~~gv~~s~ia~---~l~~~~l~~~~~~~~ 154 (233)
+|++......-.-.+.+++..+..|+... .|....+ ..+..+.+.++. ...+| ..-+..+.+.+.-..
T Consensus 194 ~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~-g~laF~l~~sEflLl~~Ts~ltl 272 (349)
T KOG1443|consen 194 KRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLG-GLLAFLLEFSEFLLLSRTSSLTL 272 (349)
T ss_pred cCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHheeeeccceee
Confidence 46666655555556677777777775321 1221111 123333333321 22333 334567788888888
Q ss_pred eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHH
Q 026763 155 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 195 (233)
Q Consensus 155 s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv 195 (233)
+++.-.--+...++|..+++|.++...++|..+...|+..-
T Consensus 273 SIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 273 SIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999999999999998653
No 65
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.56 E-value=0.00022 Score=63.37 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=86.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHH
Q 026763 54 KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFF 133 (233)
Q Consensus 54 ~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 133 (233)
.++..|.++.+.++++.+...+++|+-..|.+. -..-.-+ .. ... +. .+..|. |+.
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~~---~~-----~~~--------l~--~~~W~~-----G~~ 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAGS---GG-----RSY--------LR--RPLWWI-----GLL 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccc---hh-----hHH--------Hh--hHHHHH-----HHH
Confidence 357899999999999999999999987655431 0000000 00 000 00 011123 333
Q ss_pred HHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhh
Q 026763 134 AVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 134 ~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
..+++..+..-++...|++.++++..+.-++.++++..++||+++..+++|.++++.|..+...
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 3345556677788889999999999999999999999999999999999999999999876543
No 66
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.44 E-value=0.00014 Score=63.05 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHH-HHHHHHH
Q 026763 56 WIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAI-GCSAFFA 134 (233)
Q Consensus 56 ~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~~ 134 (233)
...|.++.-.+ ..+....++.++..+.. |....-..+++--++..+..+ ....+ .+......-|..+ .++|.
T Consensus 36 p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcli-y~~~~-v~gp~g~R~~LiLRg~mG~-- 108 (346)
T KOG4510|consen 36 PNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLI-YYMQP-VIGPEGKRKWLILRGFMGF-- 108 (346)
T ss_pred CccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEE-EEeee-eecCCCcEEEEEeehhhhh--
Confidence 46788888888 66666666667766543 444443332221111111111 11111 0111011112111 12233
Q ss_pred HHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 135 VALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 135 s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.+.+..+|++++.+-+.++++....|+++++++|++|+|+.+....+|..+-+.|+.+..|.
T Consensus 109 --tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 109 --TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred --hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 35667788999999999999999999999999999999999999999999999999887664
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.29 E-value=0.00042 Score=50.89 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhccCcceeee-ccchHHHHHHHHHHHHhCCccchhhhhhHHHH
Q 026763 134 AVALRSLAHTWACHKKGPVYVSM-YKPLGIVFAIIMGVTLLGDTLYLGSVVGATIV 188 (233)
Q Consensus 134 ~s~ia~~l~~~~l~~~~~~~~s~-~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LI 188 (233)
+-++++.++.+++|+.+.+.+-. +.-+..+...+.|++++||++++.+++|..+|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 45778999999999999998855 45689999999999999999999999999886
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.21 E-value=0.0029 Score=57.27 Aligned_cols=138 Identities=9% Similarity=0.010 Sum_probs=88.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH-----HhcCCC-CccccCCchhHHHHH
Q 026763 55 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVAL-----IAERNP-NSWRLKPDTELIAIG 128 (233)
Q Consensus 55 ~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~-----~~~~~~-~~~~~~~~~~~~~l~ 128 (233)
+...|.++++++++||+.+.+-+|+ .|+.+ .+.. |- ..+. +..++.. +..++. ......+...+..-+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence 4678999999999999999998887 45442 3332 43 1222 2111111 111111 011111122333333
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcceeeeccc-hHHHHHHHHHHHHhCCcc-------chhhhhhHHHHHHHHHHHhhcc
Q 026763 129 CSAFFAVALRSLAHTWACHKKGPVYVSMYKP-LGIVFAIIMGVTLLGDTL-------YLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 129 ~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~-l~Pv~a~i~~~l~lgE~l-------~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
..|++ =.++-..+..++|++|.+.+-++.. ++-+.+.+++.+++||-. ....++|.+++++|+.+..+..
T Consensus 78 l~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 78 LFGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34443 3678999999999999988876654 588899999999999753 2346788999999999887743
No 69
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.19 E-value=0.00042 Score=59.79 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhhhhh
Q 026763 136 ALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMI 206 (233)
Q Consensus 136 ~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~~ 206 (233)
.+.-.+.+.++++++|+.-.+..-+..++++++++++|+++++..||++..+..+|+.++........+.+
T Consensus 28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~ 98 (244)
T PF04142_consen 28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNS 98 (244)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccc
Confidence 34567788999999999999999999999999999999999999999999999999998877766554443
No 70
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.0095 Score=47.58 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHH
Q 026763 57 IIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVA 136 (233)
Q Consensus 57 ~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ 136 (233)
....++.+.+..+-.+..-+..++.+...+|+....+++..|.+.+..+..+.+..+ .+....+..|+.. .-|+++ +
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~-~GG~lG-a 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAW-IGGLLG-A 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHH-Hccchh-h
Confidence 445677778888888888787888776666888888999999999888887755432 1221111223322 123333 2
Q ss_pred HHHHHHHHhhhccCcceeeecc-chHHHHHHHHHHHHhC----CccchhhhhhHHHHHHHHHHHhhcc
Q 026763 137 LRSLAHTWACHKKGPVYVSMYK-PLGIVFAIIMGVTLLG----DTLYLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 137 ia~~l~~~~l~~~~~~~~s~~~-~l~Pv~a~i~~~l~lg----E~l~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
+--+.-.....|+|++.+-.+. .-|-+.+.++..+=+. .++++..++|.+++++|+++..+++
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 2234456678888876554433 3366677777666544 5689999999999999976655543
No 71
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.01 E-value=0.098 Score=47.43 Aligned_cols=179 Identities=11% Similarity=0.035 Sum_probs=99.3
Q ss_pred chhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHH-------HHHHHHH-hh
Q 026763 12 LAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY-------IVQTSII-RE 83 (233)
Q Consensus 12 ~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~-------v~~~~~~-~~ 83 (233)
..-.+|+++.++|+++.......- ++++ .+....+.++..|.++.+++.+.+++|. ...+... ..
T Consensus 135 ~~~~~gv~liliGi~l~s~Ag~~k----~~~~---~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g 207 (345)
T PRK13499 135 RMTLLGVLVALIGVAIVGRAGQLK----ERKM---GIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALG 207 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhc----cccc---ccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcC
Confidence 445679999999998876531110 0000 0000134567899999999999999999 4332211 11
Q ss_pred cChhhHHHHH---HHHHHHHHHHHHHHHh---c-CCCCcc-ccCCc-hh-HHHHHH--HHHHHHHHHHHHHHHhhhccCc
Q 026763 84 YPEELMATFI---CCVFVTIQSTVVALIA---E-RNPNSW-RLKPD-TE-LIAIGC--SAFFAVALRSLAHTWACHKKGP 151 (233)
Q Consensus 84 ~~~~l~~t~~---~~~~g~l~~~~~~~~~---~-~~~~~~-~~~~~-~~-~~~l~~--~gv~~s~ia~~l~~~~l~~~~~ 151 (233)
. ++.....- .++.|++....+-... . ++.... ....+ .. +-..++ ++-+.=.+++..|..+-++.|.
T Consensus 208 ~-~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~ 286 (345)
T PRK13499 208 V-DPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGA 286 (345)
T ss_pred C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2 22222222 3336665554332221 1 111101 11010 11 111111 1111224567778888888876
Q ss_pred ceeee---cc-chHHHHHHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHhhcc
Q 026763 152 VYVSM---YK-PLGIVFAIIMGVTLLGDTLY------LGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 152 ~~~s~---~~-~l~Pv~a~i~~~l~lgE~l~------~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
..... +. -+.-+++.+.|. ++||.=+ ...++|.++++.|..++..++
T Consensus 287 ~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 287 QYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred ccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 65544 33 566689999999 5999866 667899999999988776554
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.00025 Score=60.75 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHH
Q 026763 59 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALR 138 (233)
Q Consensus 59 G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia 138 (233)
..++.++-++.|+..-....|... +|..-+ ..+.+|++.+.++.++...+...+ ..++.-+..|.+ =.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~-lGtT~GALifaiiv~~~~~p~~T~-----~~~iv~~isG~~-Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQT-LGTTLGALIFAIIVFLFVSPELTL-----TIFIVGFISGAF-WSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhh-hhccHHHHHHHHHHheeecCccch-----hhHHHHHHhhhH-hhhh
Confidence 457788888999987776555432 244443 556678877766655443221111 122222223332 3568
Q ss_pred HHHHHHhhhccCcceeeeccc-hHHHHHHHHHHHHhCCccchhhh----hhHHHHHHHHHHHhhcchh
Q 026763 139 SLAHTWACHKKGPVYVSMYKP-LGIVFAIIMGVTLLGDTLYLGSV----VGATIVAFGFYSVIWGQSE 201 (233)
Q Consensus 139 ~~l~~~~l~~~~~~~~s~~~~-l~Pv~a~i~~~l~lgE~l~~~~i----iG~~LIl~Gv~lv~~~~~~ 201 (233)
...++++++..|++++.+.+. +|-+-+.+++++++||-.+..|+ +..++++.|+++..++++.
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 889999999999999998865 68899999999999998887765 4567778888876555443
No 73
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=96.54 E-value=0.0049 Score=51.48 Aligned_cols=175 Identities=12% Similarity=0.099 Sum_probs=105.4
Q ss_pred ceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026763 3 KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIR 82 (233)
Q Consensus 3 ~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~ 82 (233)
.+.++.|+...|++..+++..|++++...+ ..-.+...|..+..+++..-++|-++-|+...
T Consensus 98 ~IVL~D~~~~~kIlaailAI~GiVmiay~D------------------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iG 159 (290)
T KOG4314|consen 98 IIVLGDRFMGFKILAAILAIGGIVMIAYAD------------------NEHADEIIGIACAVGSAFMAALYKVLFKMFIG 159 (290)
T ss_pred HHHhccchhhhhHHHHHHHhCcEEEEEecc------------------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999998875321 12235689999999999999999999888765
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHH------HHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeee
Q 026763 83 EYPEELMATFICCVFVTIQSTVVA------LIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSM 156 (233)
Q Consensus 83 ~~~~~l~~t~~~~~~g~l~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~ 156 (233)
+.. --...-+.+..|..-+.... .+++ ..+|+......|..+.-.+.+..++ -++.+.++.-..|-..|+
T Consensus 160 nAn-~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~--VE~~qsFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISi 235 (290)
T KOG4314|consen 160 NAN-FGDAAHFMSCLGFFNLCFISFPALILAFTG--VEHLQSFAAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISI 235 (290)
T ss_pred cCc-chhHHHHHHHHHHHHHHHHhhhHHHHHHhc--hHHHHHHhhCCchhhhhHHHHHHHH-hhheeehhhhhchhhhee
Confidence 421 11112222223332222211 1111 1123210112354444333333232 234566777777777776
Q ss_pred ccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcc
Q 026763 157 YKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 157 ~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
-+...-..-.....++=+-..+-...+|.++|..|..+.....
T Consensus 236 G~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 236 GMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred hheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 6665444444556555444567778899999999988766554
No 74
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.0052 Score=54.63 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=97.5
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNEL--RSPQKNWIIGGLVLAAGSFFLSLLYIVQTS 79 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~ 79 (233)
.+.++|||.+..-.+|+++|++|-.+++.. +|-.+. -+++ ... -..+..+..=..+.++.. .+-..+.++
T Consensus 108 a~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h-aP~e~~---i~t~-~el~~~~~~~~Fliy~~~iil~~---~il~~~~~p 179 (335)
T KOG2922|consen 108 ASFFLKEKLNLLGILGCVLCVVGSTTIVIH-APKEQE---IESV-EEVWELATEPGFLVYVIIIILIV---LILIFFYAP 179 (335)
T ss_pred HHHHHHHHHHHhhhhheeEEecccEEEEEe-cCcccc---cccH-HHHHHHhcCccHHHHHHHHHHHH---HHHheeecc
Confidence 457899999999999999999999888753 221000 0000 000 001112211111111111 111111111
Q ss_pred HHhhcChhhHHHHHHHHHHHHHHHH-------HHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 026763 80 IIREYPEELMATFICCVFVTIQSTV-------VALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPV 152 (233)
Q Consensus 80 ~~~~~~~~l~~t~~~~~~g~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~ 152 (233)
. ....+.+.......++|++-..- +-.....+.+ .. .+..|..++.... +...-..-.|+|++...++
T Consensus 180 ~-~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~q-l~--~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fnts 254 (335)
T KOG2922|consen 180 R-YGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQ-LF--YPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTS 254 (335)
T ss_pred c-ccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcc-cc--cHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh
Confidence 0 11112344444555555332111 1111222221 11 1234444433333 3455555668999999998
Q ss_pred eeeeccch-HHHHHHHHHHHHhCCcc--chh----hhhhHHHHHHHHHHHhhcchhhhhhh
Q 026763 153 YVSMYKPL-GIVFAIIMGVTLLGDTL--YLG----SVVGATIVAFGFYSVIWGQSEEEKMI 206 (233)
Q Consensus 153 ~~s~~~~l-~Pv~a~i~~~l~lgE~l--~~~----~iiG~~LIl~Gv~lv~~~~~~~~~~~ 206 (233)
.+++..|. -..++++.|.+.+.|-- +.. .+.|+..++.|+++.++.|+.+.+.+
T Consensus 255 lV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~~ 315 (335)
T KOG2922|consen 255 IVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISLA 315 (335)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecccccccc
Confidence 88887776 56788888888888853 333 45677888899888755544443333
No 75
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.41 E-value=0.025 Score=43.11 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhccCcceeeecc-chHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHH
Q 026763 137 LRSLAHTWACHKKGPVYVSMYK-PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYS 194 (233)
Q Consensus 137 ia~~l~~~~l~~~~~~~~s~~~-~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~l 194 (233)
.+-.+|++.+++.+-+.+.+.. .+.=+++++.++++.+|..+...++|+++|+.|+.+
T Consensus 53 ~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 53 SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3456788899999999999995 888899999998777777888899999999999865
No 76
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.39 E-value=0.01 Score=53.14 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=79.8
Q ss_pred HHHHHHHHHh--hcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 026763 73 LYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKG 150 (233)
Q Consensus 73 y~v~~~~~~~--~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~ 150 (233)
++++.|+..+ ..+-|.+++......+.+.+...-..-..++... .....+..++-+|++- .++..+=+-++++.+
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~--~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKI--SSKLPLRTLLPLGLVF-CISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcc--ccccchHHHHHHHHHH-HHHHHhcchhhhccc
Confidence 3445666666 4556788888866666665555443322222211 1223466666667754 677888899999999
Q ss_pred cceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHH
Q 026763 151 PVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGF 192 (233)
Q Consensus 151 ~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv 192 (233)
++..-+.-.++|++.+++++++.+|+.+.........|+.|+
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV 150 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGV 150 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeE
Confidence 999999999999999999999999998876444444444443
No 77
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.0046 Score=54.93 Aligned_cols=125 Identities=14% Similarity=0.199 Sum_probs=87.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHH
Q 026763 52 PQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSA 131 (233)
Q Consensus 52 ~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 131 (233)
.+.++..|.++.+.+.+..+...++.|+-.+|.. . ...+. -+++..-... +. | +.|
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~ra-------------~~gg~~yl~~--~~-W----w~G 70 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLRA-------------GEGGYGYLKE--PL-W----WAG 70 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hcccc-------------cCCCcchhhh--HH-H----HHH
Confidence 3556789999999999999999988777655431 1 11110 0111110100 11 2 335
Q ss_pred HHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 132 FFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 132 v~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
++..+++=..-+-+....+++.++++..+.-++.++++..+++|++++...+|+++.++|-.+......
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP 139 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAP 139 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecC
Confidence 555566666666667778999999999999999999999999999999999999999999655444333
No 78
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.18 E-value=1.7 Score=39.30 Aligned_cols=61 Identities=15% Similarity=0.023 Sum_probs=55.3
Q ss_pred HHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcc
Q 026763 139 SLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 139 ~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
-.+++.+.++++|+.-.+..-+--+.++++++++|+++++..||...++..+|+.+++...
T Consensus 106 Nnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 106 NNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred hhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 3477888899999999999999999999999999999999999999999999999988443
No 79
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.12 E-value=0.031 Score=50.78 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhh
Q 026763 136 ALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 202 (233)
Q Consensus 136 ~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~ 202 (233)
.+|-+.++-++++..++...+.....-+++..+|.++.+|++++...++.++-+.|++++..++.++
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 5677888999999999999999999999999999999999999999999999999999988776544
No 80
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.40 E-value=0.035 Score=46.47 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 138 RSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 138 a~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
+-+.|..++++++|+.++.+...+-.+..++++++||+++....++..++.+.|+.+..+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 4668999999999999999999999999999999999999999999999999998665443
No 81
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=92.02 E-value=2 Score=38.79 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=77.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHH-HHHHHHHHHHHHHHHHH--HhcCCCC-ccccCCchhHHHHHHH
Q 026763 55 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMA-TFICCVFVTIQSTVVAL--IAERNPN-SWRLKPDTELIAIGCS 130 (233)
Q Consensus 55 ~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~-t~~~~~~g~l~~~~~~~--~~~~~~~-~~~~~~~~~~~~l~~~ 130 (233)
....|.++..+++++-+.+.+=.||. |+.+ .+. -..+.+++=++ .|... ..-++.. .....+...+......
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLI-VPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 35799999999999999988876765 3442 222 22233333322 22222 1111111 1111111233333333
Q ss_pred HHHHHHHHHHHHHHhhhccCcceee-eccchHHHHHHHHHHHHhCC-------ccchhhhhhHHHHHHHHHHHhhcc
Q 026763 131 AFFAVALRSLAHTWACHKKGPVYVS-MYKPLGIVFAIIMGVTLLGD-------TLYLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 131 gv~~s~ia~~l~~~~l~~~~~~~~s-~~~~l~Pv~a~i~~~l~lgE-------~l~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
|++ =+++=..|-.++|++|.+... +..-+.-+++.++--++.|+ +-....++|.++.++|+.+.-+..
T Consensus 80 G~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 80 GVL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 443 256667888899999986543 33334444555554444332 223467889999999998876653
No 82
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=91.66 E-value=0.35 Score=42.05 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=18.3
Q ss_pred chhhhhhHHHHHHHHHHHhhcchhh
Q 026763 178 YLGSVVGATIVAFGFYSVIWGQSEE 202 (233)
Q Consensus 178 ~~~~iiG~~LIl~Gv~lv~~~~~~~ 202 (233)
.+...+|.+++++|..+...-|..+
T Consensus 115 ~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 115 PWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHHHHHHHHHHHHHHHheeeecCCC
Confidence 5678899999999887765544433
No 83
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=90.79 E-value=0.22 Score=37.26 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=26.8
Q ss_pred HHHHHHHhCCccchhhhhhHHHHHHHHHHH
Q 026763 166 IIMGVTLLGDTLYLGSVVGATIVAFGFYSV 195 (233)
Q Consensus 166 ~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv 195 (233)
+.+++++++|++++++.+|.++++.+++.+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 467889999999999999999999998764
No 84
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.48 E-value=0.057 Score=46.59 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=85.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC--hhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHH
Q 026763 53 QKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP--EELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCS 130 (233)
Q Consensus 53 ~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~--~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (233)
..+...|...++.+.+.|-.|.++.+... .+ +.+--.+..|.++++.+.... + +...-+ ..|..++ -
T Consensus 147 ~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~g~saiLPqAiGMv~~ali~~~~~---~-~~~~~K----~t~~nii-~ 215 (288)
T COG4975 147 PSNLKKGIVILLISTLGYVGYVVLFQLFD--VDGLSAILPQAIGMVIGALILGFFK---M-EKRFNK----YTWLNII-P 215 (288)
T ss_pred hHhhhhheeeeeeeccceeeeEeeecccc--ccchhhhhHHHHHHHHHHHHHhhcc---c-ccchHH----HHHHHHh-h
Confidence 34567899999999999999999866542 21 223334566667766544321 1 111001 1222221 2
Q ss_pred HHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhh----hhhHHHHHHHHHH
Q 026763 131 AFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGS----VVGATIVAFGFYS 194 (233)
Q Consensus 131 gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~----iiG~~LIl~Gv~l 194 (233)
|+. =+++-..+..+.++.|.+..=.++-+-.+++.+-|.++|+|+=|..+ ++|.++++.|..+
T Consensus 216 G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 216 GLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred HHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 222 24567777888899998888788888889999999999999877665 5678888877554
No 85
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=88.92 E-value=2.5 Score=39.51 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHhCCcc-chhhhhhHHHHHHHHHHHhhcchhhhh------hhcccccccc-CCCCCCCcccccccccc
Q 026763 160 LGIVFAIIMGVTLLGDTL-YLGSVVGATIVAFGFYSVIWGQSEEEK------MIDDKDIDSL-KSSSPKAPLLQTKSIFC 231 (233)
Q Consensus 160 l~Pv~a~i~~~l~lgE~l-~~~~iiG~~LIl~Gv~lv~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 231 (233)
+.|+++.+ +++..+-.. ...-.-|++-+++|+++..+.|+++++ |+-++|+..+ ++.+++++ |++|.||+
T Consensus 168 l~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~-ls~~~i~~ 245 (448)
T COG2271 168 LAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEG-LTAWQIFV 245 (448)
T ss_pred hHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCC-ccHHHHHH
Confidence 55666555 666655333 333455666677888887776666542 2334455444 44455555 88888886
Q ss_pred c
Q 026763 232 R 232 (233)
Q Consensus 232 ~ 232 (233)
+
T Consensus 246 ~ 246 (448)
T COG2271 246 K 246 (448)
T ss_pred H
Confidence 4
No 86
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.62 E-value=0.99 Score=33.47 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCccchhhhhhHHHHHHHHHHHhh
Q 026763 165 AIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 165 a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
-+.+|++.++|++.|.++.|..++..|++.+.+
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 356899999999999999999999999987654
No 87
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.25 E-value=12 Score=33.46 Aligned_cols=116 Identities=12% Similarity=0.167 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhcC--hhhHHHHHHHHHHHHHHHHHHHHh--cCCCCccccCCchhH--HHHHHHHHHHHHHHHHHHHHh
Q 026763 72 LLYIVQTSIIREYP--EELMATFICCVFVTIQSTVVALIA--ERNPNSWRLKPDTEL--IAIGCSAFFAVALRSLAHTWA 145 (233)
Q Consensus 72 ~y~v~~~~~~~~~~--~~l~~t~~~~~~g~l~~~~~~~~~--~~~~~~~~~~~~~~~--~~l~~~gv~~s~ia~~l~~~~ 145 (233)
..++..|.....++ ..+.+..+|++...+.+......- +.++-.|.. ..-| ..++|.+-+-|+ .++
T Consensus 26 lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~~i~t~------~~s 97 (314)
T KOG1444|consen 26 LMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVGMLFTG------SKS 97 (314)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHHHHHHc------ccc
Confidence 34455555555554 344555589988877665554321 222222321 1223 345555443333 468
Q ss_pred hhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHH
Q 026763 146 CHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 195 (233)
Q Consensus 146 l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv 195 (233)
+++++.....++-.+.|+..++....++|.+++...+....++++|-...
T Consensus 98 lk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 98 LKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred ccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999998886553
No 88
>PRK02237 hypothetical protein; Provisional
Probab=86.50 E-value=2.4 Score=31.91 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 163 VFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 163 v~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
+.+.+.++.+-|++|+..+++|.++.+.|+.+..+..+
T Consensus 71 ~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 71 AGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 34557788888999999999999999999987766543
No 89
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=85.15 E-value=1.9 Score=37.33 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC----------hhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHH
Q 026763 65 AGSFFLSLLYIVQTSIIRE-YP----------EELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFF 133 (233)
Q Consensus 65 ~aa~~~a~y~v~~~~~~~~-~~----------~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 133 (233)
+--+||=.|-+.|+|+.+. |. -.+.+.++||..-.++.=....+..... ... + ..+...... .
T Consensus 20 GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~--~D~-t-~~~~YaAcs--~ 93 (337)
T KOG1580|consen 20 GIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTE--IDN-T-PTKMYAACS--A 93 (337)
T ss_pred chhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccccc--ccC-C-cchHHHHHH--H
Confidence 3346888899999998753 21 1355666777776655433222222111 110 0 122221110 0
Q ss_pred HHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchh
Q 026763 134 AVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 201 (233)
Q Consensus 134 ~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~ 201 (233)
.-..+...-|.++|..+=-..-+--..-|+=.+++|+++.+.+-+|....=..+|++|+.+....+++
T Consensus 94 sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 94 SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 11334555677888877544445555677888899999999999999999999999999887766443
No 90
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=84.98 E-value=21 Score=29.70 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=22.5
Q ss_pred HHHHHHHhCCccchhhhhhHHHHH--HHHHHHhh
Q 026763 166 IIMGVTLLGDTLYLGSVVGATIVA--FGFYSVIW 197 (233)
Q Consensus 166 ~i~~~l~lgE~l~~~~iiG~~LIl--~Gv~lv~~ 197 (233)
-.+|..++++-.-+.+++|.+|.+ .|.....+
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~ 166 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLAR 166 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455788888888888999988866 44443333
No 91
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=81.73 E-value=1.8 Score=32.53 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 164 FAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 164 ~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
.+.+.++.+=|++|+..+++|..+.+.|+.+..+..+
T Consensus 70 ~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 70 ASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 4556788888999999999999999999988766543
No 92
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=81.04 E-value=29 Score=33.24 Aligned_cols=44 Identities=2% Similarity=-0.124 Sum_probs=23.4
Q ss_pred eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 155 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 155 s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
..+....|+-+.+.|.+.=.-.++....++++.++++..+..+.
T Consensus 350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555678888888876533333333344444444444444333
No 93
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=80.34 E-value=1.8 Score=38.27 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=43.7
Q ss_pred HHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhh
Q 026763 141 AHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 141 l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
+.+-++....++.--+..--.-++..+++.-+|+.+++..||+|+..+.+|+.++-.
T Consensus 102 lm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 102 LMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 334444445555555555567789999999999999999999999999999877543
No 94
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=78.94 E-value=9.4 Score=34.24 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 134 AVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 134 ~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
++++=-.+-||++++.+.+.-++.-.-.+++-.++|.++==|+++|....=..+|.+|+++..+.
T Consensus 93 ata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K 157 (349)
T KOG1443|consen 93 ATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK 157 (349)
T ss_pred hhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec
Confidence 56666778899999999999999999999999999999999999999888888888888765543
No 95
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=78.40 E-value=1.3 Score=34.34 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=20.8
Q ss_pred eeeeccchHHHHHHHHHHHHhCCcc---chhhhhhHHHHH
Q 026763 153 YVSMYKPLGIVFAIIMGVTLLGDTL---YLGSVVGATIVA 189 (233)
Q Consensus 153 ~~s~~~~l~Pv~a~i~~~l~lgE~l---~~~~iiG~~LIl 189 (233)
+++.+.|+.|+++++++.++. ..+ .+..++++++.+
T Consensus 69 ~aa~l~Y~lPll~li~g~~l~-~~~~~~e~~~~l~~l~~l 107 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVLG-SYLGGSELWAILGGLLGL 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345556688998888887553 222 344444444444
No 96
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=78.11 E-value=1.2 Score=33.75 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=25.7
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTL 30 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~ 30 (233)
..++++|+++..+++|+.+-++|++.+-.
T Consensus 75 g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 75 SWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999998753
No 97
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=76.95 E-value=1.5 Score=33.86 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026763 125 IAIGCSAFFAVALRSLA 141 (233)
Q Consensus 125 ~~l~~~gv~~s~ia~~l 141 (233)
..++..|+..|.++|.+
T Consensus 57 ~vili~GvvvT~vays~ 73 (129)
T PF15099_consen 57 VVILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHHhhHhheeeEee
Confidence 34566788888888866
No 98
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=76.84 E-value=1.7 Score=33.44 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=25.2
Q ss_pred ceecccccCchhhhHHHHHHHHHHHHHH
Q 026763 3 KLDLRVQSSLAKSIGTMVSIAGALTVTL 30 (233)
Q Consensus 3 ~~~lke~~s~~~~~G~~la~~G~~~l~~ 30 (233)
.++++|+++..|++|+.+-++|++.+-.
T Consensus 76 ~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 76 VLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999988743
No 99
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=75.34 E-value=3.2 Score=34.81 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=25.3
Q ss_pred eeeccchHHHHHHHHHHHHhCCccc-hhhhhhHHH-HHHHHHHHh
Q 026763 154 VSMYKPLGIVFAIIMGVTLLGDTLY-LGSVVGATI-VAFGFYSVI 196 (233)
Q Consensus 154 ~s~~~~l~Pv~a~i~~~l~lgE~l~-~~~iiG~~L-Il~Gv~lv~ 196 (233)
.+.+..+.|..+..+|..+-+--.. +.+++|+++ ++.|+.+..
T Consensus 36 ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 36 IAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3444456677777777765543323 345666554 568987764
No 100
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=70.60 E-value=75 Score=27.94 Aligned_cols=102 Identities=8% Similarity=-0.083 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHH
Q 026763 59 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALR 138 (233)
Q Consensus 59 G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia 138 (233)
-.++++.++++--...-+.|.+-.... +...+.+-..+++++++.+.--+.. .++ ..++..++..|+--..+
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~RPwr~---r~~---~~~~~~~~~yGvsLg~M- 84 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALFRPWRR---RLS---KPQRLALLAYGVSLGGM- 84 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHhhHHHh---ccC---hhhhHHHHHHHHHHHHH-
Confidence 456777777766666666666655543 5667778888888887765322221 121 23466666566633333
Q ss_pred HHHHHHhhhccCcceeeeccchHHHHHHHH
Q 026763 139 SLAHTWACHKKGPVYVSMYKPLGIVFAIIM 168 (233)
Q Consensus 139 ~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~ 168 (233)
..+++.+++|++-..+-.+.++-|+.-.++
T Consensus 85 Nl~FY~si~riPlGiAVAiEF~GPL~vA~~ 114 (292)
T COG5006 85 NLLFYLSIERIPLGIAVAIEFTGPLAVALL 114 (292)
T ss_pred HHHHHHHHHhccchhhhhhhhccHHHHHHH
Confidence 557778999999999999999999855444
No 101
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.03 E-value=2.2 Score=37.61 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=72.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhcC-----CCCcccc--CCchhH--HHHHHHHHHHHHHHHHHHHHhhhccCcceee
Q 026763 85 PEELMATFICCVFVTIQSTVVALIAER-----NPNSWRL--KPDTEL--IAIGCSAFFAVALRSLAHTWACHKKGPVYVS 155 (233)
Q Consensus 85 ~~~l~~t~~~~~~g~l~~~~~~~~~~~-----~~~~~~~--~~~~~~--~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s 155 (233)
+.|+-++.+|++....+.......... ..++.+. ....++ .+++|.+ .-..-++.+++.|++.--
T Consensus 59 d~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~------mI~fnnlcL~yVgVaFYy 132 (347)
T KOG1442|consen 59 DAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFIL------MISFNNLCLKYVGVAFYY 132 (347)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeee------ehhccceehhhcceEEEE
Confidence 457888889998887776666543221 1111111 111111 1222222 233568899999999999
Q ss_pred eccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHH
Q 026763 156 MYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 195 (233)
Q Consensus 156 ~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv 195 (233)
+-..+..++++++++++|+++-+..-..++.+|+.|..+-
T Consensus 133 vgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 133 VGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG 172 (347)
T ss_pred eccchhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence 9999999999999999999999999888899999987653
No 102
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=68.33 E-value=62 Score=29.06 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHh-hc-------ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHH
Q 026763 69 FLSLLYIVQTSIIR-EY-------PEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSL 140 (233)
Q Consensus 69 ~~a~y~v~~~~~~~-~~-------~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~ 140 (233)
++-.+-++|+++.. .| .++.-+...|.+.+.+.-......+...... ...|.-..+.++ ...++-.
T Consensus 25 t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~-----~apl~~y~~is~-tn~~s~~ 98 (327)
T KOG1581|consen 25 TFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSG-----VAPLYKYSLISF-TNTLSSW 98 (327)
T ss_pred HHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCC-----CCchhHHhHHHH-HhhcchH
Confidence 33445566776642 22 3455555566655554442222111111111 122444445555 3455667
Q ss_pred HHHHhhhccCc--ceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhh
Q 026763 141 AHTWACHKKGP--VYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 202 (233)
Q Consensus 141 l~~~~l~~~~~--~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~ 202 (233)
+.+.++++.+= ...+=..=+.|+ ++.+.++.+.+.++.+.+=+.+|-+|+.+....++..
T Consensus 99 ~~yeaLKyvSyPtq~LaKscKmIPV--mlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 99 CGYEALKYVSYPTQTLAKSCKMIPV--MLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHHhccchHHHHHHHhhhhHH--HHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 88899999762 222222334555 5789999999999999999999999998877664443
No 103
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=67.12 E-value=3.7 Score=32.60 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=16.3
Q ss_pred hccCcceeeeccchHHHHHHHHHHHH
Q 026763 147 HKKGPVYVSMYKPLGIVFAIIMGVTL 172 (233)
Q Consensus 147 ~~~~~~~~s~~~~l~Pv~a~i~~~l~ 172 (233)
..-+.-+.+.+.|+.|+++.+++.+.
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666678888777776644
No 104
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=63.44 E-value=6.6 Score=34.75 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=57.3
Q ss_pred HHHHHhhhc-cCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhhhhhcccccccc
Q 026763 140 LAHTWACHK-KGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMIDDKDIDSL 214 (233)
Q Consensus 140 ~l~~~~l~~-~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~~~~~~~~~~ 214 (233)
.+-|++++. ++...==++..-.++..++.+|+++|.+-+..|+....++-+|+++....+.++-+. ++++.++.
T Consensus 79 v~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~-~~~~l~~~ 153 (330)
T KOG1583|consen 79 VTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS-KLSGLDSG 153 (330)
T ss_pred eeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh-hhcccccC
Confidence 456777775 455566677888999999999999999999999999999999999887776655544 24444443
No 105
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.05 E-value=9.2 Score=29.51 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=4.8
Q ss_pred hhHHHHHHHH
Q 026763 183 VGATIVAFGF 192 (233)
Q Consensus 183 iG~~LIl~Gv 192 (233)
+|.+++++.+
T Consensus 75 aGvIg~Illi 84 (122)
T PF01102_consen 75 AGVIGIILLI 84 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555433
No 106
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=62.60 E-value=54 Score=25.72 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHH-HHHHHHHHhhcchh
Q 026763 123 ELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATI-VAFGFYSVIWGQSE 201 (233)
Q Consensus 123 ~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~L-Il~Gv~lv~~~~~~ 201 (233)
.+.....+.+.+.++=|..-.+..||.|.++.+.. --..+.+.+.+++. .+|.++ -+.|.++....++|
T Consensus 32 ~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~---ga~iG~IvG~f~~~-------p~G~iiG~~~Ga~l~El~~~~ 101 (140)
T PF04306_consen 32 FLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIW---GAIIGGIVGFFVLP-------PLGLIIGPFLGAFLGELLRGK 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHhCC
Confidence 35555666777888899999999999999888876 34556666666544 225444 34677776654444
Q ss_pred hh
Q 026763 202 EE 203 (233)
Q Consensus 202 ~~ 203 (233)
+.
T Consensus 102 ~~ 103 (140)
T PF04306_consen 102 DF 103 (140)
T ss_pred CH
Confidence 33
No 107
>PRK11469 hypothetical protein; Provisional
Probab=62.23 E-value=5.6 Score=32.94 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=26.3
Q ss_pred ccchHHHHHHHHHHHHhCCccchhhhhhHHH-HHHHHHHHh
Q 026763 157 YKPLGIVFAIIMGVTLLGDTLYLGSVVGATI-VAFGFYSVI 196 (233)
Q Consensus 157 ~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~L-Il~Gv~lv~ 196 (233)
+..+.|..+..+|..+-+=.....+++|..+ ++.|.++..
T Consensus 46 ~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 46 VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788887787766544444556777665 447887755
No 108
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=61.53 E-value=28 Score=32.94 Aligned_cols=45 Identities=7% Similarity=0.002 Sum_probs=28.7
Q ss_pred eeeccchHHHHHHHHHHHHhCC-----ccchhhhhhHHHHHHHHHHHhhc
Q 026763 154 VSMYKPLGIVFAIIMGVTLLGD-----TLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 154 ~s~~~~l~Pv~a~i~~~l~lgE-----~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
..+|..+--+.-.++-.+=-++ .++..|++..+++++|+++..+.
T Consensus 226 f~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~ 275 (460)
T PRK13108 226 FGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILA 275 (460)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555554432222 27889999999999998776553
No 109
>PRK10489 enterobactin exporter EntS; Provisional
Probab=61.08 E-value=1.2e+02 Score=27.09 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhC-CccchhhhhhHHHHHHHHHHHhhcchhhhhhhccccccccCCC
Q 026763 161 GIVFAIIMGVTLLG-DTLYLGSVVGATIVAFGFYSVIWGQSEEEKMIDDKDIDSLKSS 217 (233)
Q Consensus 161 ~Pv~a~i~~~l~lg-E~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~~~~~~~~~~~~~ 217 (233)
.++-..+.+++.-. .......+.|++..+.++.+.... ++.|++++||++.|.+|
T Consensus 361 ~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 416 (417)
T PRK10489 361 DAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL--GELRRFRQTPPEVDASD 416 (417)
T ss_pred HhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc--ccccccccccccCCCCC
Confidence 45555555655421 112223344444444554443322 22233334444444443
No 110
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=59.84 E-value=5.9 Score=31.72 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=11.6
Q ss_pred eeccchHHHHHHHHHHHH
Q 026763 155 SMYKPLGIVFAIIMGVTL 172 (233)
Q Consensus 155 s~~~~l~Pv~a~i~~~l~ 172 (233)
+.+.|+.|+++.+.+.++
T Consensus 78 a~lvYllPLl~li~ga~l 95 (154)
T PRK10862 78 ALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444457888877776544
No 111
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=59.37 E-value=6.5 Score=24.74 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=4.8
Q ss_pred hhhhhhHHHHHHH
Q 026763 179 LGSVVGATIVAFG 191 (233)
Q Consensus 179 ~~~iiG~~LIl~G 191 (233)
|...+=.++|++|
T Consensus 4 wlt~iFsvvIil~ 16 (49)
T PF11044_consen 4 WLTTIFSVVIILG 16 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 112
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=59.06 E-value=53 Score=24.09 Aligned_cols=58 Identities=19% Similarity=0.064 Sum_probs=24.5
Q ss_pred HHhhhccCcceeeeccchHHHHHHHHHHHH---hCCc-cchhhhhhHHHHHHHHHHHhhcch
Q 026763 143 TWACHKKGPVYVSMYKPLGIVFAIIMGVTL---LGDT-LYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 143 ~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~---lgE~-l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
..++++.+....-.+-.+.-++++++|.+. -++. +-...+.|++-=+.+-.+.....+
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~ 83 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTN 83 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHh
Confidence 567777654333333333333444443332 2222 222235566444444444444444
No 113
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=58.82 E-value=33 Score=27.93 Aligned_cols=19 Identities=11% Similarity=-0.012 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026763 57 IIGGLVLAAGSFFLSLLYI 75 (233)
Q Consensus 57 ~~G~ll~l~aa~~~a~y~v 75 (233)
..|.++.++..=|--+...
T Consensus 102 ~LGIfLPLITTNCaVLgva 120 (193)
T COG4657 102 LLGIFLPLITTNCAVLGVA 120 (193)
T ss_pred HHHHhhhhHhhchHHHHHH
Confidence 4555555554444444333
No 114
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=58.07 E-value=1.7e+02 Score=27.59 Aligned_cols=84 Identities=10% Similarity=-0.029 Sum_probs=35.1
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeec
Q 026763 78 TSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMY 157 (233)
Q Consensus 78 ~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~ 157 (233)
+++.++.+ +.......+++.++.+.............-...........+..++.-..+.=....+..++.|+...+..
T Consensus 341 ~~l~~r~~-~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~ 419 (500)
T PRK09584 341 NKMGDRLP-MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFI 419 (500)
T ss_pred HHhCcCCC-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHH
Confidence 55555543 33444555555555554443322210000000000112222333333333333334456666777666666
Q ss_pred cchHH
Q 026763 158 KPLGI 162 (233)
Q Consensus 158 ~~l~P 162 (233)
+.+.-
T Consensus 420 ~g~~~ 424 (500)
T PRK09584 420 MGSWF 424 (500)
T ss_pred HHHHH
Confidence 65443
No 115
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=57.63 E-value=19 Score=26.96 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 163 VFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 163 v~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
+.+.+..+++=|.+++.++++|.++.++|+.++..+.+
T Consensus 70 ~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 70 AASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 34556677777888999999999999999877665543
No 116
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=56.88 E-value=1.4e+02 Score=26.27 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 026763 13 AKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSL 72 (233)
Q Consensus 13 ~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~ 72 (233)
..+.|+.++..|+..+.. .-+ .........|..+..++.+.|.+
T Consensus 5 ~~~f~~~mGtg~l~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~l~~~ 48 (330)
T PF03595_consen 5 PAWFGMVMGTGGLSNLLY-LLP---------------YHFGGLAILSEVLFILALILFLV 48 (330)
T ss_dssp GGGGHHHHHHHHHHHHHH-TTT---------------TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHH---------------HhccchhHHHHHHHHHHHHHHHH
Confidence 367888999988877642 111 01222356788888888888777
No 117
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=56.32 E-value=87 Score=23.82 Aligned_cols=105 Identities=11% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-CccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHH
Q 026763 92 FICCVFVTIQSTVVALIAERNP-NSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGV 170 (233)
Q Consensus 92 ~~~~~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~ 170 (233)
.....+|......+..+..... +..+ .+.....+.+...+.+.+.+..-+.+-.++.+-......-........+.-.
T Consensus 12 ~iGi~ig~~i~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ig~~~gl~s~if~~e~~s~~~~~iiHf~~~~~~~~~~~ 90 (136)
T PF11457_consen 12 LIGIGIGSFISLIISLFYGQGFYPSFP-ISVSSILSVLVAVLIGAVFGLASLIFEIERWSLLKQTIIHFIITYAIFLILA 90 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655554321 0011 1112344444111223333444444455666655555444444444433333
Q ss_pred HHhCCc-cchhhhhhHHHHHHHHHHHhh
Q 026763 171 TLLGDT-LYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 171 l~lgE~-l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
..+|=- .+....+...+++..+|+..|
T Consensus 91 ~~~gW~~~~~~~~~~~~~~fi~IYliIw 118 (136)
T PF11457_consen 91 YLLGWFPLSVISLLIFILIFIIIYLIIW 118 (136)
T ss_pred HHhCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 333322 222355666666666666655
No 118
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=56.07 E-value=30 Score=26.19 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=42.8
Q ss_pred HHHHHHhhhccCcceeeeccch-HHHHHHHHHHHHhCCc-cchhhhhhHHHHHHHHHHH
Q 026763 139 SLAHTWACHKKGPVYVSMYKPL-GIVFAIIMGVTLLGDT-LYLGSVVGATIVAFGFYSV 195 (233)
Q Consensus 139 ~~l~~~~l~~~~~~~~s~~~~l-~Pv~a~i~~~l~lgE~-l~~~~iiG~~LIl~Gv~lv 195 (233)
-.+|++-+++.+-+.+.++.+- .-.++.++|. .|||. ..-..++|..++++|+++.
T Consensus 66 Saly~~tLa~a~islavpv~nsltfafta~~G~-~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 66 SALYYLTLASAPISLAVPVTNSLTFAFTAIFGK-ALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHhcCCceeeeeecchhHHHHHHHHHH-HhccccccceeehhhhHHhhhhhhe
Confidence 4477888999999888887665 5557888888 45665 4556788999999998764
No 119
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=55.76 E-value=29 Score=32.26 Aligned_cols=22 Identities=36% Similarity=0.298 Sum_probs=11.4
Q ss_pred ccccCchhhhHHHHHHHHHHHH
Q 026763 7 RVQSSLAKSIGTMVSIAGALTV 28 (233)
Q Consensus 7 ke~~s~~~~~G~~la~~G~~~l 28 (233)
|-++..+-+..+++..+|.+++
T Consensus 85 ~v~y~~Ri~~~~~l~~~g~l~v 106 (402)
T PF02487_consen 85 RVPYWIRILICVALSAAGMLLV 106 (402)
T ss_pred hccchHHHHHHHHHHHHHHhhe
Confidence 3344455555555555555544
No 120
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=55.60 E-value=3.9 Score=36.22 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccCcceeeeccch
Q 026763 136 ALRSLAHTWACHKKGPVYVSMYKPL 160 (233)
Q Consensus 136 ~ia~~l~~~~l~~~~~~~~s~~~~l 160 (233)
+++-++|.|.++++|++.-.++.+.
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaFc 143 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAFC 143 (381)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5566777889999999877666544
No 121
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=54.24 E-value=1.6e+02 Score=26.11 Aligned_cols=38 Identities=8% Similarity=-0.146 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcch
Q 026763 163 VFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 163 v~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
+...+.+++.-.-..+...++++++.++++.+....++
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555442222344444555555555544443333
No 122
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=53.88 E-value=12 Score=22.86 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCccchhhhhhHHHHHHHHH
Q 026763 162 IVFAIIMGVTLLGDTLYLGSVVGATIVAFGFY 193 (233)
Q Consensus 162 Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~ 193 (233)
|+.|.+.|.+++=-+=-.+.++|.-+|+.|+.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~l 32 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLL 32 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889888877767777899999998875
No 123
>PF13994 PgaD: PgaD-like protein
Probab=53.50 E-value=46 Score=25.90 Aligned_cols=21 Identities=5% Similarity=0.207 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHhhcchh
Q 026763 181 SVVGATIVAFGFYSVIWGQSE 201 (233)
Q Consensus 181 ~iiG~~LIl~Gv~lv~~~~~~ 201 (233)
+.-..++++.++.++.|.+..
T Consensus 65 ~~y~~i~~~~a~~Li~Wa~yn 85 (138)
T PF13994_consen 65 QIYLLIALVNAVILILWAKYN 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666543
No 124
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=53.32 E-value=1.6e+02 Score=26.01 Aligned_cols=20 Identities=5% Similarity=-0.105 Sum_probs=11.0
Q ss_pred ceeeeccchHHHHHHHHHHH
Q 026763 152 VYVSMYKPLGIVFAIIMGVT 171 (233)
Q Consensus 152 ~~~s~~~~l~Pv~a~i~~~l 171 (233)
...+++....++.+.+.+.+
T Consensus 334 ~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 334 TAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666655553
No 125
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=51.55 E-value=1.8e+02 Score=25.99 Aligned_cols=19 Identities=11% Similarity=-0.109 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHHHHhh
Q 026763 179 LGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 179 ~~~iiG~~LIl~Gv~lv~~ 197 (233)
....+++++.+.++.++.+
T Consensus 370 ~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 370 GFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345666666666665533
No 126
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=50.34 E-value=20 Score=26.52 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=8.6
Q ss_pred CCCCCCCcccc
Q 026763 215 KSSSPKAPLLQ 225 (233)
Q Consensus 215 ~~~~~~~~~~~ 225 (233)
..|.|.||||+
T Consensus 87 ~~d~EraPLLn 97 (97)
T PF08611_consen 87 STDRERAPLLN 97 (97)
T ss_pred CCccccccccC
Confidence 55688999985
No 127
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=47.19 E-value=47 Score=19.97 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 026763 57 IIGGLVLAAGSFFLSLLYIVQ 77 (233)
Q Consensus 57 ~~G~ll~l~aa~~~a~y~v~~ 77 (233)
..=.++.++.+.+|++|++..
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 344688899999999999973
No 128
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=45.12 E-value=2.3e+02 Score=25.36 Aligned_cols=10 Identities=10% Similarity=0.208 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 026763 161 GIVFAIIMGV 170 (233)
Q Consensus 161 ~Pv~a~i~~~ 170 (233)
.|+...+++-
T Consensus 111 lpi~~~l~g~ 120 (385)
T PF03547_consen 111 LPILQALFGE 120 (385)
T ss_pred HHHHHHHhcc
Confidence 4555554444
No 129
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=45.09 E-value=61 Score=28.44 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=28.8
Q ss_pred eeeccchHHHHHHHHHHHHhCC---------ccchhhhhhHHHHHHHHHHHhhcc
Q 026763 154 VSMYKPLGIVFAIIMGVTLLGD---------TLYLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 154 ~s~~~~l~Pv~a~i~~~l~lgE---------~l~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
...+..+-.+.-.+.-.+=-++ .++..|++...+++.|+.+..+.+
T Consensus 214 ~~~yli~Y~~~Rf~iEf~R~~~~~~~~~~~~~lt~~Q~~sl~~i~~g~~~~~~~~ 268 (278)
T TIGR00544 214 FGVYLIGYGIFRFIIEGLREPDLMLTEFSFLNISMGQILSLLMIAGILIIMLLAY 268 (278)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555432222 268899999999999987765443
No 130
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=45.08 E-value=1.9e+02 Score=25.08 Aligned_cols=110 Identities=7% Similarity=0.133 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHH
Q 026763 87 ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAI 166 (233)
Q Consensus 87 ~l~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~ 166 (233)
...+.+.|.+...+.+++.-..-..+..-.. ...|+.+-++=+ ++ -+---+++++++...-.+|-++.-+.-+
T Consensus 37 nflll~vQSlvcvv~l~iLk~l~~~~fR~t~---aK~WfpiSfLLv---~M-Iyt~SKsLqyL~vpiYTiFKNltII~iA 109 (309)
T COG5070 37 NFLLLAVQSLVCVVGLLILKFLRLVEFRLTK---AKKWFPISFLLV---VM-IYTSSKSLQYLAVPIYTIFKNLTIILIA 109 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhheehhh---hhhhcCHHHHHH---HH-HHhcccceeeeeeeHHHHhccceeehhH
Confidence 3556677877777666555432211111001 112322221111 11 1123467888888888899999999999
Q ss_pred HHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhh
Q 026763 167 IMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEE 203 (233)
Q Consensus 167 i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~ 203 (233)
..-.+++|.+.+.......++++..-+...|+..+..
T Consensus 110 ygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~ 146 (309)
T COG5070 110 YGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQAS 146 (309)
T ss_pred hhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHH
Confidence 9999999999999999999999999888888866443
No 131
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=44.59 E-value=46 Score=29.90 Aligned_cols=129 Identities=9% Similarity=-0.046 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhcCC--------CC---ccccCCchhHHHHHHHHH
Q 026763 64 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN--------PN---SWRLKPDTELIAIGCSAF 132 (233)
Q Consensus 64 l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~~~--------~~---~~~~~~~~~~~~l~~~gv 132 (233)
+++.+||+-+-..+|-..++-..| ..+.|=+.++-+...++..++-++ +. +.....+..+...+.-|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 567888988888877665532211 235555555555544443333211 11 011101111222222233
Q ss_pred HHHHHHHHHHHHhhhccCcceeeeccc-hHHHHHHHHHHHHhCCccc--hhhhhhHHHHHHHHHHH
Q 026763 133 FAVALRSLAHTWACHKKGPVYVSMYKP-LGIVFAIIMGVTLLGDTLY--LGSVVGATIVAFGFYSV 195 (233)
Q Consensus 133 ~~s~ia~~l~~~~l~~~~~~~~s~~~~-l~Pv~a~i~~~l~lgE~l~--~~~iiG~~LIl~Gv~lv 195 (233)
.--++-.+..+++...|-+.+-++.. +.-+.++++-|+ ++.+.+ ...+.|.+++++.+.+-
T Consensus 81 -vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lg 144 (336)
T PF07168_consen 81 -VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILG 144 (336)
T ss_pred -hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHH
Confidence 33566777788888888766554432 222334455553 445543 24466777777777654
No 132
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=44.17 E-value=21 Score=25.73 Aligned_cols=32 Identities=9% Similarity=-0.067 Sum_probs=22.7
Q ss_pred CccchhhhhhHHHHHHHHHHHhhcchhhhhhh
Q 026763 175 DTLYLGSVVGATIVAFGFYSVIWGQSEEEKMI 206 (233)
Q Consensus 175 E~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~~ 206 (233)
-.+++..++|.++++.|+.+...+..+++-.+
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~R 34 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFRPEVSR 34 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHCcchhh
Confidence 34678899999999998877665544444444
No 133
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=42.94 E-value=20 Score=29.96 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=18.6
Q ss_pred HhCCccchhhhhhHHHHH-HHHHHHh
Q 026763 172 LLGDTLYLGSVVGATIVA-FGFYSVI 196 (233)
Q Consensus 172 ~lgE~l~~~~iiG~~LIl-~Gv~lv~ 196 (233)
++|=+++..++.|+++.+ .|+-++.
T Consensus 64 ~fgIsl~af~IaGGiiL~~ia~~ml~ 89 (203)
T PF01914_consen 64 FFGISLPAFRIAGGIILFLIALEMLF 89 (203)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 467888889999988876 6665443
No 134
>PF15102 TMEM154: TMEM154 protein family
Probab=42.67 E-value=19 Score=28.60 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=5.2
Q ss_pred cccCCCCCCCc
Q 026763 212 DSLKSSSPKAP 222 (233)
Q Consensus 212 ~~~~~~~~~~~ 222 (233)
|..+.+.-|.|
T Consensus 103 ~e~~~Env~~P 113 (146)
T PF15102_consen 103 YELGSENVKVP 113 (146)
T ss_pred cccCccccccc
Confidence 33344455555
No 135
>PRK11010 ampG muropeptide transporter; Validated
Probab=42.59 E-value=2.9e+02 Score=25.82 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=23.2
Q ss_pred hhhccCcceeeeccchHHHHHHHH----HHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 145 ACHKKGPVYVSMYKPLGIVFAIIM----GVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 145 ~l~~~~~~~~s~~~~l~Pv~a~i~----~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.-++.+.+..+.++.+.-+...+. |++.-.--.+....+..++.+.|+.+..+-
T Consensus 345 ~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 345 CNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555443333333 333210012223345555555665555443
No 136
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=41.90 E-value=30 Score=22.41 Aligned_cols=25 Identities=8% Similarity=0.227 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHhhcchhhhhhh
Q 026763 182 VVGATIVAFGFYSVIWGQSEEEKMI 206 (233)
Q Consensus 182 iiG~~LIl~Gv~lv~~~~~~~~~~~ 206 (233)
++++++.++|+.++.-++-+.+.++
T Consensus 20 i~A~vlfi~Gi~iils~kckCk~~q 44 (50)
T PF02038_consen 20 IFAGVLFILGILIILSGKCKCKFNQ 44 (50)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHST
T ss_pred HHHHHHHHHHHHHHHcCccccCCCC
Confidence 5566777788877665555443333
No 137
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=41.41 E-value=2.6e+02 Score=27.47 Aligned_cols=23 Identities=22% Similarity=-0.008 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhccCcceeeecc
Q 026763 136 ALRSLAHTWACHKKGPVYVSMYK 158 (233)
Q Consensus 136 ~ia~~l~~~~l~~~~~~~~s~~~ 158 (233)
...|++-.+.++++|-+++-.+.
T Consensus 420 I~~~ffs~klI~kiGHv~v~~lg 442 (618)
T KOG3762|consen 420 ILFYFFSFKLIEKIGHVNVMYLG 442 (618)
T ss_pred HHHHHHHHHHHHHhcccceeeeh
Confidence 56677778888888876665555
No 138
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=40.59 E-value=2.9e+02 Score=25.23 Aligned_cols=181 Identities=13% Similarity=0.071 Sum_probs=91.8
Q ss_pred cccCchhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH---HHh--
Q 026763 8 VQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTS---IIR-- 82 (233)
Q Consensus 8 e~~s~~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~---~~~-- 82 (233)
++-.+..++|++++++|+++.... |..-+ ++ .+ ....+.++-.|.+..+.+.+.-|++++-... +.+
T Consensus 131 ~~~g~~vL~Gv~v~LiGIai~g~A-G~~Ke----~~--~~-~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a 202 (344)
T PF06379_consen 131 TPSGQIVLLGVAVCLIGIAICGKA-GSMKE----KE--LG-EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAA 202 (344)
T ss_pred CCCchhhhhHHHHHHHHHHHHhHH-HHhhh----hh--hc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 344566778999999999987543 21000 00 00 1123456779999999999988888774221 110
Q ss_pred -hc-Chhh----HHHHHHHHHHHHHHHHHHHHhc---CCCC---ccccCCchhHHHHHHHHHHH--HHHHHHHHHHhhhc
Q 026763 83 -EY-PEEL----MATFICCVFVTIQSTVVALIAE---RNPN---SWRLKPDTELIAIGCSAFFA--VALRSLAHTWACHK 148 (233)
Q Consensus 83 -~~-~~~l----~~t~~~~~~g~l~~~~~~~~~~---~~~~---~~~~~~~~~~~~l~~~gv~~--s~ia~~l~~~~l~~ 148 (233)
.. .+|+ ......+.-|.+.-+.+++... .+.. +.....+.-.-.+++..+-+ =-..+++|.++-.+
T Consensus 203 ~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~ 282 (344)
T PF06379_consen 203 VAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESK 282 (344)
T ss_pred HHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111 1111222223333344443321 1111 11111111112233322221 13456677777777
Q ss_pred cCcc----eeeeccchHHHHHHHHHHHHhCC------ccchhhhhhHHHHHHHHHHHhh
Q 026763 149 KGPV----YVSMYKPLGIVFAIIMGVTLLGD------TLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 149 ~~~~----~~s~~~~l~Pv~a~i~~~l~lgE------~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
+|.. .-.+.+.+.-+++-+.|. +++| +.-...++|.++++.++.++-.
T Consensus 283 lg~~~~~~sW~i~ma~~vl~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 283 LGASGPFSSWAIHMALIVLFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 7743 334555666777777776 4565 2334457888888888776543
No 139
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=40.48 E-value=67 Score=19.30 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026763 58 IGGLVLAAGSFFLSLLYIVQT 78 (233)
Q Consensus 58 ~G~ll~l~aa~~~a~y~v~~~ 78 (233)
.=.+..++.+..|++|++...
T Consensus 6 liVl~Pil~A~gWa~fNIg~~ 26 (36)
T PF06298_consen 6 LIVLLPILPAAGWALFNIGRA 26 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 446788899999999999743
No 140
>PRK11111 hypothetical protein; Provisional
Probab=40.04 E-value=31 Score=29.12 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=18.0
Q ss_pred HhCCccchhhhhhHHHHH-HHHHHH
Q 026763 172 LLGDTLYLGSVVGATIVA-FGFYSV 195 (233)
Q Consensus 172 ~lgE~l~~~~iiG~~LIl-~Gv~lv 195 (233)
++|=+++..++.|+++.+ .|+-+.
T Consensus 70 ~fGIsl~afrIaGGiiL~~ial~Ml 94 (214)
T PRK11111 70 LFGISIDSFRIAGGILVVTIAMSMI 94 (214)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 467888888999988876 666543
No 141
>COG1971 Predicted membrane protein [Function unknown]
Probab=39.73 E-value=26 Score=29.11 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=25.7
Q ss_pred ccchHHHHHHHHHHHHhCCccchhhhhhHHH-HHHHHHHHhh
Q 026763 157 YKPLGIVFAIIMGVTLLGDTLYLGSVVGATI-VAFGFYSVIW 197 (233)
Q Consensus 157 ~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~L-Il~Gv~lv~~ 197 (233)
+..+.|+++...+.++=+=.-.+.+|+|.++ ++.|+++..-
T Consensus 46 f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e 87 (190)
T COG1971 46 FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIE 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777765433345667666655 5599877543
No 142
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=39.31 E-value=41 Score=24.24 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHHhhcch
Q 026763 179 LGSVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 179 ~~~iiG~~LIl~Gv~lv~~~~~ 200 (233)
+.+++|.+++++|..+..+...
T Consensus 1 ~~~~~G~~l~~~g~~l~~~~~~ 22 (106)
T PF04191_consen 1 WRFVLGLLLILAGIALAIWAFK 22 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999988776544
No 143
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=38.09 E-value=37 Score=25.51 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=13.0
Q ss_pred hhhHHHHH-HHHHHHhhcchhhhhh
Q 026763 182 VVGATIVA-FGFYSVIWGQSEEEKM 205 (233)
Q Consensus 182 iiG~~LIl-~Gv~lv~~~~~~~~~~ 205 (233)
++|.+|++ ++.-+..|+..+.++|
T Consensus 6 il~llLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 6 ILALLLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45666544 6666666764444333
No 144
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=37.33 E-value=94 Score=27.05 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=30.0
Q ss_pred eeeeccchHHHHHHHHHHHHhCC-----ccchhhhhhHHHHHHHHHHHhhc
Q 026763 153 YVSMYKPLGIVFAIIMGVTLLGD-----TLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 153 ~~s~~~~l~Pv~a~i~~~l~lgE-----~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
..+.+..+-.+.-.+...+=-++ .+|..|+++..+++.|+.+..+.
T Consensus 206 ~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 206 VFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666665442122 36889999999999998766443
No 145
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=37.20 E-value=1.5e+02 Score=21.50 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 122 TELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 122 ~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
..|...+.+|++..++.+.+.+|.-.. -.| +..+-=+|+..+|..+++.|+.+..
T Consensus 30 p~W~~~~m~glm~~GllWlvvyYl~~~-----------~~P---------~m~~lG~WN~~IGFg~~i~G~lmt~ 84 (87)
T PRK00159 30 SVWYVVLMLGLMLIGLAWLVVNYLAGP-----------AIP---------WMADLGPWNYAIGFALMITGLLMTM 84 (87)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhccC-----------CCC---------CCcccCchhHHHHHHHHHHHHHHhc
Confidence 457777777888778878777776431 011 1122225788999999999987754
No 146
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=36.13 E-value=21 Score=33.06 Aligned_cols=26 Identities=19% Similarity=0.191 Sum_probs=17.9
Q ss_pred hccccccccCCCCCCCcccccccccc
Q 026763 206 IDDKDIDSLKSSSPKAPLLQTKSIFC 231 (233)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (233)
+++++.+++.++.+++|+++++|-+|
T Consensus 268 ee~~~~d~~~s~~~e~p~is~~ss~~ 293 (441)
T KOG1397|consen 268 EEETEQDDEVSNEDEAPNISRWSSII 293 (441)
T ss_pred hhcccccccccccCCCCcchHHHHHH
Confidence 33334455556689999999987655
No 147
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=35.69 E-value=52 Score=21.94 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=14.9
Q ss_pred chhhhhhHHHHHHHHHHHhhcchhhhhh
Q 026763 178 YLGSVVGATIVAFGFYSVIWGQSEEEKM 205 (233)
Q Consensus 178 ~~~~iiG~~LIl~Gv~lv~~~~~~~~~~ 205 (233)
...--+...+..+|+....|+-+..+..
T Consensus 5 ~~Lipvsi~l~~v~l~~flWavksgQyD 32 (58)
T COG3197 5 YILIPVSILLGAVGLGAFLWAVKSGQYD 32 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 3333444555556666667765544443
No 148
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=34.84 E-value=21 Score=33.03 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=25.8
Q ss_pred cchhhhhhHHHHHH-HHHHHhhcchhhhhhhcccccccc-CCCCCCCccccccccc
Q 026763 177 LYLGSVVGATIVAF-GFYSVIWGQSEEEKMIDDKDIDSL-KSSSPKAPLLQTKSIF 230 (233)
Q Consensus 177 l~~~~iiG~~LIl~-Gv~lv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 230 (233)
+=+.|++|.+++++ ..++-.+.|+|-.+.+.+++.++. +...+||.-+.|...|
T Consensus 178 liP~~i~Gl~~vl~lA~~lG~kErkRlg~~~~~~~~~~~~~~~~~~~~~~~rpkl~ 233 (433)
T COG2851 178 LIPIQIIGLVLVLALAWLLGKKERKRLGVIDLSEELEQLVELSEEDQEELKRPKLF 233 (433)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHhhhccCchhhhhccccCCchhhhhhccHHH
Confidence 34568888888774 333333333333344443332222 3334444445555444
No 149
>PRK10489 enterobactin exporter EntS; Provisional
Probab=34.45 E-value=3.4e+02 Score=24.24 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=10.1
Q ss_pred ccCchhhhHHHHHHHHHHHH
Q 026763 9 QSSLAKSIGTMVSIAGALTV 28 (233)
Q Consensus 9 ~~s~~~~~G~~la~~G~~~l 28 (233)
|--+...++..++..|..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLL 36 (417)
T ss_pred CChhhHHHHHHHHHHHHHHH
Confidence 33333445656666665443
No 150
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=34.18 E-value=87 Score=22.67 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcc-CcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 122 TELIAIGCSAFFAVALRSLAHTWACHKK-GPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 122 ~~~~~l~~~gv~~s~ia~~l~~~~l~~~-~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
..|...+.+|++..++.+.+.+|.-... .+ ..+-=+|+..+|..++++|+.+..
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyYi~~~~i~p---------------------i~~lG~WN~~IGfg~~~~Gf~mt~ 84 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYYISGGQIPP---------------------IPDLGNWNLAIGFGLMIVGFLMTM 84 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhcccCCCCC---------------------cccccchHHHHHHHHHHHHHHHHc
Confidence 4577777777777777777777665554 11 111117888999999999987754
No 151
>PRK14397 membrane protein; Provisional
Probab=34.12 E-value=2.6e+02 Score=23.87 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=8.0
Q ss_pred cccccccCCCCCCCcc
Q 026763 208 DKDIDSLKSSSPKAPL 223 (233)
Q Consensus 208 ~~~~~~~~~~~~~~~~ 223 (233)
+++..+++++++-+|-
T Consensus 194 k~~~~~~~~~~~~~~~ 209 (222)
T PRK14397 194 KHHDAAQGTAAGAAPT 209 (222)
T ss_pred ccCccccccCCCCCCc
Confidence 3333455555555553
No 152
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=34.00 E-value=1.4e+02 Score=19.56 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026763 13 AKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIRE 83 (233)
Q Consensus 13 ~~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~ 83 (233)
..++|..+.++|++++.. .| .|.+.++++-..+|...-..|++.++
T Consensus 4 v~v~G~~lv~~Gii~~~l-PG------------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPL-PG------------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhhHHHHHHHHHHHhhcC-CC------------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356788899999987653 22 25566667777777776666666543
No 153
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=33.82 E-value=92 Score=19.18 Aligned_cols=19 Identities=11% Similarity=-0.130 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 026763 58 IGGLVLAAGSFFLSLLYIV 76 (233)
Q Consensus 58 ~G~ll~l~aa~~~a~y~v~ 76 (233)
.=++..++.+.+|++|++.
T Consensus 6 liVl~Pil~A~~Wa~fNIg 24 (40)
T PRK13240 6 LIVLAPILAAAGWAVFNIG 24 (40)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4467889999999999996
No 154
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=33.59 E-value=4.1e+02 Score=25.80 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Q 026763 57 IIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTI 100 (233)
Q Consensus 57 ~~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l 100 (233)
..=.+|+++++++.-.|.+..|+. ++.|.+..+....+++|.+
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~-~~lP~s~llil~GlllG~i 51 (559)
T TIGR00840 9 YEFILWILLASLAKIGFHLTHKVI-RAVPESVLLIVYGLLVGGI 51 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHH
Confidence 344688888888888888775554 5577666666667777654
No 155
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=33.16 E-value=1.9e+02 Score=20.95 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 122 TELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 122 ~~~~~l~~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
..|...+.+|++..++.+.+.+|.-.. -.| +..+ | +|+..+|..+++.|+.+..
T Consensus 31 P~W~~~~m~~lm~~Gl~WlvvyYl~~~-----------~~P-~~~l------G---~WN~~IGfg~~~~G~~mt~ 84 (87)
T PRK02251 31 PRWFVPLFVALMIIGLIWLVVYYLSNG-----------SLP-IPAL------G---AWNLVIGFGLIMAGFGMTT 84 (87)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhCC-----------CcC-cccc------c---chhHHHHHHHHHHHHHHHc
Confidence 457777777777777777777776321 111 1111 1 4688899999999987654
No 156
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=32.45 E-value=53 Score=21.22 Aligned_cols=7 Identities=14% Similarity=0.301 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 026763 190 FGFYSVI 196 (233)
Q Consensus 190 ~Gv~lv~ 196 (233)
+|+.+..
T Consensus 16 Lg~~I~~ 22 (50)
T PF12606_consen 16 LGLSICT 22 (50)
T ss_pred HHHHHHH
Confidence 4544444
No 157
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=32.14 E-value=2.4e+02 Score=22.02 Aligned_cols=33 Identities=6% Similarity=0.124 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhhccCcceeee
Q 026763 124 LIAIGCSAFFAVALRS-LAHTWACHKKGPVYVSM 156 (233)
Q Consensus 124 ~~~l~~~gv~~s~ia~-~l~~~~l~~~~~~~~s~ 156 (233)
+..++..+++.|+++| .-=.+-++|.|=..+++
T Consensus 30 f~~~l~~sl~ltvvaY~iGDl~ILPr~gN~~Ati 63 (136)
T PF10710_consen 30 FGDILLISLVLTVVAYLIGDLFILPRTGNIVATI 63 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeCCCChhHHH
Confidence 4445556666667777 44455566665444443
No 158
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.91 E-value=1.5e+02 Score=22.56 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=3.7
Q ss_pred HHHHHHhh
Q 026763 190 FGFYSVIW 197 (233)
Q Consensus 190 ~Gv~lv~~ 197 (233)
+|+..+.+
T Consensus 87 AG~lnv~R 94 (116)
T COG5336 87 AGVLNVLR 94 (116)
T ss_pred HHHHHHHH
Confidence 44544443
No 159
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=31.84 E-value=2.6e+02 Score=22.19 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=39.8
Q ss_pred HHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchhhhhhhccc
Q 026763 139 SLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMIDDK 209 (233)
Q Consensus 139 ~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~~~~~~~~~ 209 (233)
..+..+.+++.|.++.++-....-+ -....+.++ .+..++.|..++..=+.++...+...+++..||
T Consensus 62 ~G~~~~lm~~kgi~rm~lG~~vm~~---~~~llw~gg-v~~~~IAg~~lv~filmvVLiPEpg~QRS~~DN 128 (144)
T PF01350_consen 62 LGVFWFLMRRKGIGRMSLGMLVMAV---AGYLLWMGG-VPPGQIAGVLLVFFILMVVLIPEPGKQRSQQDN 128 (144)
T ss_pred HHHHHhhhcCCCcchhhHHHHHHHH---HHHHHHhcC-CcHHHhHHHHHHHHHHHHhcccCCCCcCCcccc
Confidence 3344557777787777655432222 222334455 478889999999887766666655444444343
No 160
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=31.47 E-value=3.1e+02 Score=22.96 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC--cceeeeccchHHH
Q 026763 124 LIAIGCSAFFAVALRSLAHTWACHKKG--PVYVSMYKPLGIV 163 (233)
Q Consensus 124 ~~~l~~~gv~~s~ia~~l~~~~l~~~~--~~~~s~~~~l~Pv 163 (233)
.+.++..|+++...-|.+|.|.-++.+ .-+.+.+-++...
T Consensus 127 lItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~ 168 (226)
T COG4858 127 LITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVA 168 (226)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHH
Confidence 444455555555555555555555555 4444444444333
No 161
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=31.42 E-value=36 Score=25.51 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=4.7
Q ss_pred HHHHHHhhcch
Q 026763 190 FGFYSVIWGQS 200 (233)
Q Consensus 190 ~Gv~lv~~~~~ 200 (233)
+-.|...++++
T Consensus 29 ~i~yf~~~Rpq 39 (106)
T PRK05585 29 AIFYFLIIRPQ 39 (106)
T ss_pred HHHHHHhccHH
Confidence 33444444433
No 162
>PRK15049 L-asparagine permease; Provisional
Probab=30.56 E-value=2.6e+02 Score=26.46 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=7.1
Q ss_pred ccchHHHHHHHHHH
Q 026763 157 YKPLGIVFAIIMGV 170 (233)
Q Consensus 157 ~~~l~Pv~a~i~~~ 170 (233)
.....|.+++++..
T Consensus 421 ~~p~~~~~~l~~~~ 434 (499)
T PRK15049 421 GAPFTSWLTLLFLL 434 (499)
T ss_pred CccHHHHHHHHHHH
Confidence 34555655554443
No 163
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=30.01 E-value=4.4e+02 Score=24.20 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC---cceeeeccchHHHHHHHHHHHHhCCccc----------------hhhhhhHHH
Q 026763 127 IGCSAFFAVALRSLAHTWACHKKG---PVYVSMYKPLGIVFAIIMGVTLLGDTLY----------------LGSVVGATI 187 (233)
Q Consensus 127 l~~~gv~~s~ia~~l~~~~l~~~~---~~~~s~~~~l~Pv~a~i~~~l~lgE~l~----------------~~~iiG~~L 187 (233)
.+..|+++..+++....+..+|.+ |..+-..-.+-=+++.++.-++-.+... ..|++|.+.
T Consensus 277 A~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~ 356 (399)
T PF00909_consen 277 ALLIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIVV 356 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhheecccceeEeccccceEeeeeccHHHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHHH
Confidence 345677777887877776777764 5555555666666777777666655432 467777777
Q ss_pred HH
Q 026763 188 VA 189 (233)
Q Consensus 188 Il 189 (233)
++
T Consensus 357 ~~ 358 (399)
T PF00909_consen 357 IL 358 (399)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 164
>COG2034 Predicted membrane protein [Function unknown]
Probab=29.92 E-value=51 Score=23.75 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHhhcchhhhh
Q 026763 180 GSVVGATIVAFGFYSVIWGQSEEEK 204 (233)
Q Consensus 180 ~~iiG~~LIl~Gv~lv~~~~~~~~~ 204 (233)
..++|..+++.|+.+..+.+.+++.
T Consensus 14 li~iGf~LifLGi~l~~~~~~~~~~ 38 (85)
T COG2034 14 LIFIGFLLIFLGIVLPAFSPFAESG 38 (85)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccC
Confidence 4578999999998887777665554
No 165
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=29.56 E-value=4.8e+02 Score=24.53 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=19.3
Q ss_pred eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhh
Q 026763 155 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 155 s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
.+...+.-+.+.+.+.+-.-|. .-++|.++.++-+.++.+
T Consensus 382 ~~~~~L~~LY~~Ly~lLq~Edy---ALL~GSl~LF~iLa~vM~ 421 (430)
T PF06123_consen 382 IFAGLLAALYGFLYVLLQSEDY---ALLMGSLLLFIILALVMY 421 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHh
Confidence 3344455556666665444333 334555555544444433
No 166
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=29.13 E-value=53 Score=23.26 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=7.7
Q ss_pred HHHHHHhhcchhhhhhhccc
Q 026763 190 FGFYSVIWGQSEEEKMIDDK 209 (233)
Q Consensus 190 ~Gv~lv~~~~~~~~~~~~~~ 209 (233)
+-.|...+++++.++++.+|
T Consensus 13 ~i~yf~~~rpqkk~~k~~~~ 32 (82)
T PF02699_consen 13 VIFYFLMIRPQKKQQKEHQE 32 (82)
T ss_dssp HHHHHHTHHHHHHHHHHHTT
T ss_pred HHHhhheecHHHHHHHHHHH
Confidence 33344444433333333333
No 167
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=28.86 E-value=3.3e+02 Score=22.34 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=19.5
Q ss_pred HHHHHHHhCCccchhhhhhHHHHH
Q 026763 166 IIMGVTLLGDTLYLGSVVGATIVA 189 (233)
Q Consensus 166 ~i~~~l~lgE~l~~~~iiG~~LIl 189 (233)
-.+|...+.|-.-+..+.|.+|.+
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLv 155 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLV 155 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888888888999988876
No 168
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=28.57 E-value=4.6e+02 Score=23.98 Aligned_cols=13 Identities=8% Similarity=-0.258 Sum_probs=6.5
Q ss_pred HHhhhccCcceee
Q 026763 143 TWACHKKGPVYVS 155 (233)
Q Consensus 143 ~~~l~~~~~~~~s 155 (233)
.+..+..++...+
T Consensus 372 ~~~~~~~p~~~~g 384 (467)
T PRK09556 372 VAAVGFVPKKAIG 384 (467)
T ss_pred HHHHhhcchhhHH
Confidence 4445556554433
No 169
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=28.46 E-value=3.2e+02 Score=22.17 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC--hhhHHHHH
Q 026763 16 IGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP--EELMATFI 93 (233)
Q Consensus 16 ~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~~~~--~~l~~t~~ 93 (233)
++++.+..|.=+++.++--+ +......|..|..+++++.+.-+...+.---+.++.. -.+++++|
T Consensus 93 lAVV~AIFGLElLmvSQvcE-------------d~~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~fW 159 (184)
T PF15108_consen 93 LAVVVAIFGLELLMVSQVCE-------------DAHSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLMFW 159 (184)
T ss_pred HHHHHHHHhHHHHHHHHHHh-------------cchhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHHHH
Confidence 46677777876655443111 1123456889998888887766554433233333321 25677888
Q ss_pred HHHHHHHHH
Q 026763 94 CCVFVTIQS 102 (233)
Q Consensus 94 ~~~~g~l~~ 102 (233)
.-+.++..+
T Consensus 160 CeFtAsFLf 168 (184)
T PF15108_consen 160 CEFTASFLF 168 (184)
T ss_pred HHHHHHHHH
Confidence 666666443
No 170
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=28.06 E-value=4.8e+02 Score=24.01 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 026763 61 LVLAAGSFFLSLLYIV 76 (233)
Q Consensus 61 ll~l~aa~~~a~y~v~ 76 (233)
...++..+.|+...+.
T Consensus 43 ~~~~~~~i~~~~~~~v 58 (366)
T PRK10599 43 NLLALIGILSSAFSVV 58 (366)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455677776664
No 171
>COG2149 Predicted membrane protein [Function unknown]
Probab=27.42 E-value=1.3e+02 Score=23.14 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHh
Q 026763 129 CSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 129 ~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
+++-.=|.+++.....++.+..+... ++...+.+|..+|+.|+.+..
T Consensus 26 FLAWiRTsLallafGvai~~f~~~l~---------------------~~~~r~~lg~fii~~gil~~a 72 (120)
T COG2149 26 FLAWIRTSLALLAFGVAIDQFVPFLA---------------------TPVIRELLGVFLILVGILLAA 72 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777777777665333 455667777778877776544
No 172
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=27.39 E-value=1.5e+02 Score=25.76 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=29.5
Q ss_pred eeeeccchHHHHHHHHHHHHhCC-----ccchhhhhhHHHHHHHHHHHhhc
Q 026763 153 YVSMYKPLGIVFAIIMGVTLLGD-----TLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 153 ~~s~~~~l~Pv~a~i~~~l~lgE-----~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
....+...-.+.-.+...+=-++ .++..|+++..+++.|+.+..+.
T Consensus 208 ~f~~yl~~Y~~~Rf~iE~~R~~~~~~~~~ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 208 VFGLYLIGYGLGRFFIEFFREPDAQLGGGLTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred HHHHHHHHHHHHHHhhhhhccCchhhccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555443233 25889999999999998776544
No 173
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=27.25 E-value=3.3e+02 Score=25.01 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=13.0
Q ss_pred eeccchHHHHHHHHHHHHh
Q 026763 155 SMYKPLGIVFAIIMGVTLL 173 (233)
Q Consensus 155 s~~~~l~Pv~a~i~~~l~l 173 (233)
..+....|+.+++...+++
T Consensus 384 ~p~~~~~~~~~~~~~~~~~ 402 (445)
T PRK10644 384 RPAYLAVTLIAFVYCIWAV 402 (445)
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 3456677888887776654
No 174
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=26.66 E-value=4.8e+02 Score=24.25 Aligned_cols=41 Identities=17% Similarity=0.007 Sum_probs=24.2
Q ss_pred eccchHHHHHHHHHHHH-hCCccchhhhhhHHHHHHHHHHHhh
Q 026763 156 MYKPLGIVFAIIMGVTL-LGDTLYLGSVVGATIVAFGFYSVIW 197 (233)
Q Consensus 156 ~~~~l~Pv~a~i~~~l~-lgE~l~~~~iiG~~LIl~Gv~lv~~ 197 (233)
.+....|+++.+...+. ..... .....|.++++.|+.+..+
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~ 434 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLLYAAGL-KYLLLGFILYAPGIIFYGR 434 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHH
Confidence 44556677666655544 33322 3456788888888755444
No 175
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=26.43 E-value=2.5e+02 Score=21.55 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCc
Q 026763 129 CSAFFAVALRSLAHTWACHKKGP 151 (233)
Q Consensus 129 ~~gv~~s~ia~~l~~~~l~~~~~ 151 (233)
.+|+++|+++...-+..+...+.
T Consensus 67 ~lGLlGTv~Gmi~~f~~l~~~~~ 89 (139)
T PF01618_consen 67 LLGLLGTVIGMIEAFQALAETGS 89 (139)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 57888999888877777776555
No 176
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=26.36 E-value=1.4e+02 Score=23.05 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHH
Q 026763 182 VVGATIVAFGFY 193 (233)
Q Consensus 182 iiG~~LIl~Gv~ 193 (233)
++|..+++.|+.
T Consensus 90 i~g~~~~~~G~~ 101 (136)
T PF08507_consen 90 IIGLLLFLVGVI 101 (136)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 177
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=25.91 E-value=5.4e+02 Score=23.89 Aligned_cols=64 Identities=14% Similarity=0.078 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc---CcceeeeccchHHHHHHHHHHHHhCCcc---------------chhhhhhHHH
Q 026763 126 AIGCSAFFAVALRSLAHTWACHKK---GPVYVSMYKPLGIVFAIIMGVTLLGDTL---------------YLGSVVGATI 187 (233)
Q Consensus 126 ~l~~~gv~~s~ia~~l~~~~l~~~---~~~~~s~~~~l~Pv~a~i~~~l~lgE~l---------------~~~~iiG~~L 187 (233)
..+..|+++..++++...+..+|. +|..+-..-.+-=+++.++.-++-.+.. =..|++|.+.
T Consensus 281 ~A~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~g~~~~~~~~~l~~Ql~g~~~ 360 (403)
T TIGR00836 281 GAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTGGLLGGNGKQLGVQLIGIAA 360 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccccccccCCccccCcHHHHHHHHHHHHH
Confidence 334567778888887776666655 3444444444444566665555543321 1248888877
Q ss_pred HH
Q 026763 188 VA 189 (233)
Q Consensus 188 Il 189 (233)
++
T Consensus 361 ~~ 362 (403)
T TIGR00836 361 II 362 (403)
T ss_pred HH
Confidence 55
No 178
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=25.75 E-value=1.5e+02 Score=21.87 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHhh
Q 026763 182 VVGATIVAFGFYSVIW 197 (233)
Q Consensus 182 iiG~~LIl~Gv~lv~~ 197 (233)
++|..+++-......|
T Consensus 50 f~Gi~lMlPAav~ivW 65 (96)
T PF07214_consen 50 FVGIGLMLPAAVNIVW 65 (96)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666666633333334
No 179
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=25.71 E-value=63 Score=23.05 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=10.4
Q ss_pred chhhhhhHHHHHHHHHH
Q 026763 178 YLGSVVGATIVAFGFYS 194 (233)
Q Consensus 178 ~~~~iiG~~LIl~Gv~l 194 (233)
+...++|.++.+.|..+
T Consensus 3 N~~Fl~~l~lliig~~~ 19 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFL 19 (92)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34456777777766544
No 180
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=25.50 E-value=1.7e+02 Score=19.84 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHhCCc-c--------chhhhhhHHHHHHHHHHHhhc
Q 026763 159 PLGIVFAIIMGVTLLGDT-L--------YLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 159 ~l~Pv~a~i~~~l~lgE~-l--------~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.+.|+.+.+....+++.. + -++|++-.++..+..+++.+.
T Consensus 4 l~iP~l~~l~~~p~~nr~~P~v~G~Pff~~w~~~wv~lts~~~~~~y~l 52 (66)
T PF11755_consen 4 LLIPFLALLWGPPFYNRVEPTVFGMPFFYWWQLAWVVLTSVCMAIVYRL 52 (66)
T ss_pred HHHHHHHHHHhHHHhccCCccccCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666664555432 2 345555555554444544444
No 181
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=25.18 E-value=46 Score=26.15 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=24.5
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026763 52 PQKNWIIGGLVLAAGSFFLSLLYIVQTSIIR 82 (233)
Q Consensus 52 ~~~~~~~G~ll~l~aa~~~a~y~v~~~~~~~ 82 (233)
+-.+..+|-+++-.=.+.|++|.++++.+-+
T Consensus 100 Glsn~~LgwIL~gVf~lIWslY~~~~~~l~e 130 (138)
T PF07123_consen 100 GLSNNLLGWILLGVFGLIWSLYFVYTSTLDE 130 (138)
T ss_pred cccCchhHHHHHHHHHHHHHHHHhhccccCC
Confidence 3345678888888889999999999887653
No 182
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=25.11 E-value=3.8e+02 Score=25.70 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 026763 87 ELMATFICCVFVTIQSTVVA 106 (233)
Q Consensus 87 ~l~~t~~~~~~g~l~~~~~~ 106 (233)
|+......+++|-++.+.+.
T Consensus 104 Pli~s~ii~~~g~llY~~l~ 123 (488)
T KOG2325|consen 104 PLIVSFLIAIIGNLLYLALA 123 (488)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777765543
No 183
>PRK10655 potE putrescine transporter; Provisional
Probab=24.93 E-value=3.2e+02 Score=24.96 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHH-hhcchhhhhhh
Q 026763 160 LGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV-IWGQSEEEKMI 206 (233)
Q Consensus 160 l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv-~~~~~~~~~~~ 206 (233)
..|+++.+.....+-.........|..+++.|+.+. .++++.++|.|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 389 FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 456666655544332222223456777777776554 33444444433
No 184
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=24.88 E-value=91 Score=17.58 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=7.6
Q ss_pred chhhhhhHHHHHHHH
Q 026763 178 YLGSVVGATIVAFGF 192 (233)
Q Consensus 178 ~~~~iiG~~LIl~Gv 192 (233)
.+..++|.+++..+.
T Consensus 11 ~~~~~~G~~l~~~~~ 25 (34)
T TIGR01167 11 SLLLLLGLLLLGLGG 25 (34)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566664444433
No 185
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.37 E-value=2.3e+02 Score=25.14 Aligned_cols=24 Identities=13% Similarity=0.501 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHhhcchhhh
Q 026763 180 GSVVGATIVAFGFYSVIWGQSEEE 203 (233)
Q Consensus 180 ~~iiG~~LIl~Gv~lv~~~~~~~~ 203 (233)
.|++...+|++|+.+..+.++|.+
T Consensus 255 gqilSi~mIl~Gi~~~~~~~~k~~ 278 (287)
T COG0682 255 GQILSIPMILLGLWLIIYLYKKAK 278 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999988776655433
No 186
>PRK10591 hypothetical protein; Provisional
Probab=24.25 E-value=1.8e+02 Score=21.32 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHhhc
Q 026763 182 VVGATIVAFGFYSVIWG 198 (233)
Q Consensus 182 iiG~~LIl~Gv~lv~~~ 198 (233)
++|..+++-......|+
T Consensus 50 f~Gi~lmiPAav~ivWR 66 (92)
T PRK10591 50 FLGVLLMLPAAVVIIWR 66 (92)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 56667766443344443
No 187
>PHA03265 envelope glycoprotein D; Provisional
Probab=24.03 E-value=46 Score=30.38 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=21.6
Q ss_pred HHHHHHHH-HhhcchhhhhhhccccccccCCC
Q 026763 187 IVAFGFYS-VIWGQSEEEKMIDDKDIDSLKSS 217 (233)
Q Consensus 187 LIl~Gv~l-v~~~~~~~~~~~~~~~~~~~~~~ 217 (233)
||++|+++ +.|+++++.+|..|+++.++.+.
T Consensus 361 lv~vg~il~~~~rr~k~~~k~~~~~~~~~~~~ 392 (402)
T PHA03265 361 LVLVGVILYVCLRRKKELKKSAQNGLTRLRST 392 (402)
T ss_pred hhhhhHHHHHHhhhhhhhhhhhhcCChhhhhh
Confidence 34445443 56888888888889998877654
No 188
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.92 E-value=1.2e+02 Score=20.85 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=6.1
Q ss_pred hhhHHHHHHHH
Q 026763 182 VVGATIVAFGF 192 (233)
Q Consensus 182 iiG~~LIl~Gv 192 (233)
++|+..++..+
T Consensus 9 i~Gm~iVF~~L 19 (79)
T PF04277_consen 9 IIGMGIVFLVL 19 (79)
T ss_pred HHHHHHHHHHH
Confidence 55666655544
No 189
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=23.75 E-value=32 Score=23.05 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHhhcch
Q 026763 181 SVVGATIVAFGFYSVIWGQS 200 (233)
Q Consensus 181 ~iiG~~LIl~Gv~lv~~~~~ 200 (233)
+++|.+|++.|+.+..++-+
T Consensus 1 kiigi~Llv~GivLl~~G~~ 20 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGYQ 20 (59)
T ss_pred CeeeehHHHHHHHHHHhhhh
Confidence 36789999999998887743
No 190
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=23.50 E-value=5.9e+02 Score=23.50 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=5.8
Q ss_pred hhhHHHHHHHHHH
Q 026763 182 VVGATIVAFGFYS 194 (233)
Q Consensus 182 iiG~~LIl~Gv~l 194 (233)
+.|+++++.++..
T Consensus 417 ~~~~~~~i~~~~~ 429 (476)
T PLN00028 417 LMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445444433
No 191
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=23.49 E-value=4.3e+02 Score=21.87 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccc----hhhhhhHHHHHHHHHHHh
Q 026763 131 AFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLY----LGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 131 gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~----~~~iiG~~LIl~Gv~lv~ 196 (233)
-+..+++....-..-.+..+ -.-...+.=++++++|++.+.+|.. ...++|.-+++.|.....
T Consensus 110 ~~i~~GI~ri~~~~~~~~~~---G~~w~ii~Gvl~ii~g~ill~~P~~~~~~l~~llGI~li~~G~~~i~ 176 (185)
T COG3247 110 WFIASGILRIVVAFRLRSLP---GWWWMIISGVLGIIAGLILLFNPVASAWILGLLLGIELIFQGIALIA 176 (185)
T ss_pred HHHHHHHHHHHHHHHccccC---CcHHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444554544444444433 3444667778889999999888643 345677777887765543
No 192
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=23.43 E-value=4.8 Score=35.30 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=44.4
Q ss_pred HHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 141 AHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 141 l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
+...|-|+.+-+.+..+-.-.-+.-.+++|++|+-+-.+.++.|.+..+.|+.++...
T Consensus 94 ~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 94 FVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred EEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 3445556666555555555556677889999999999999999999999998776544
No 193
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=23.31 E-value=56 Score=23.32 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=6.2
Q ss_pred HHHHHHhhcchhhhh
Q 026763 190 FGFYSVIWGQSEEEK 204 (233)
Q Consensus 190 ~Gv~lv~~~~~~~~~ 204 (233)
+..|...+++++.++
T Consensus 14 ~i~yf~~~rpqkK~~ 28 (84)
T TIGR00739 14 LIFYFLIIRPQRKRR 28 (84)
T ss_pred HHHHHheechHHHHH
Confidence 334444444333333
No 194
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=23.07 E-value=5.2e+02 Score=22.70 Aligned_cols=72 Identities=8% Similarity=0.082 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH--------HHHHHhhcC
Q 026763 14 KSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIV--------QTSIIREYP 85 (233)
Q Consensus 14 ~~~G~~la~~G~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~--------~~~~~~~~~ 85 (233)
.|.++.++..|+...... -+. + .+.-...|+.+..++.+.|.+.... -++..++..
T Consensus 4 ~wF~~vMgtg~~s~~~~~-~~~--------------~-~~~l~~i~~~l~~l~~~lf~~l~~~~~~r~~~~~~~~~~~l~ 67 (320)
T TIGR00816 4 GWFAIVLGTGGLALASLS-YSF--------------Y-LPILKDLSDVLFILAIALFFLFTSCWLARLIRYPSNVLAELK 67 (320)
T ss_pred HHHHHHHHHHHHHHHHHH-hcc--------------c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 577888888888776421 110 0 1122356888888888777654332 112233444
Q ss_pred hhhHHHHHHHHHHHHH
Q 026763 86 EELMATFICCVFVTIQ 101 (233)
Q Consensus 86 ~~l~~t~~~~~~g~l~ 101 (233)
+|....++.+..-+..
T Consensus 68 ~p~~~~f~~t~~m~~~ 83 (320)
T TIGR00816 68 HPVLSSFIPLIPISTM 83 (320)
T ss_pred CChhhhhhhHHHHHHH
Confidence 5666666555444433
No 195
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=23.07 E-value=1.1e+02 Score=26.50 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=22.4
Q ss_pred HHhhhccCcceeeeccc---hHHHHHHHHHHHHh-CCccchhhhhhHHHHH---HHHHHHhhc
Q 026763 143 TWACHKKGPVYVSMYKP---LGIVFAIIMGVTLL-GDTLYLGSVVGATIVA---FGFYSVIWG 198 (233)
Q Consensus 143 ~~~l~~~~~~~~s~~~~---l~Pv~a~i~~~l~l-gE~l~~~~iiG~~LIl---~Gv~lv~~~ 198 (233)
...+.+.|......+.. -.-+...++|.++- .|.++.. +++.-+++ .|+++..+.
T Consensus 175 ~~~L~~~giv~~~~l~~~Rr~~~v~~~iiaAiiTPpD~isq~-llaiPl~lLYEisI~i~~~~ 236 (258)
T PRK10921 175 IVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQT-LLAIPMYCLFEIGVFFSRFY 236 (258)
T ss_pred HHHHHHcCCCCHHHHHhcCcHHhHHHHHHHHHcCCCcHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555555443333321 22233444555443 2333333 22333332 555555443
No 196
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=22.81 E-value=5.9e+02 Score=23.28 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=22.5
Q ss_pred eccchHHHHHHHHHHHHh-----CCccchhhhhhHHHHHHHHHHHh
Q 026763 156 MYKPLGIVFAIIMGVTLL-----GDTLYLGSVVGATIVAFGFYSVI 196 (233)
Q Consensus 156 ~~~~l~Pv~a~i~~~l~l-----gE~l~~~~iiG~~LIl~Gv~lv~ 196 (233)
+.....|+++.+.+.+++ .++.. .-+.+.++++.|+.+..
T Consensus 388 p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~y~ 432 (445)
T PRK11357 388 PAFGLMTTLAIASSLILVASTFVWAPIP-GLICAVIVIATGLPAYA 432 (445)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHhhhHHh
Confidence 344567888877776653 44322 11346666667755433
No 197
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=22.78 E-value=56 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.316 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHhhcchhhhhh
Q 026763 183 VGATIVAFGFYSVIWGQSEEEKM 205 (233)
Q Consensus 183 iG~~LIl~Gv~lv~~~~~~~~~~ 205 (233)
++.++.+.+++...|.-++.+-.
T Consensus 10 iSl~l~~~~l~~f~Wavk~GQfD 32 (51)
T TIGR00847 10 ISLLLGGVGLVAFLWSLKSGQYD 32 (51)
T ss_pred HHHHHHHHHHHHHHHHHccCCCC
Confidence 33444445555556664444433
No 198
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=22.63 E-value=3e+02 Score=27.81 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhccCcceeeeccchHHHHHHHHHHH-------HhCCccchhhhhhHHHHH-HHH-HHHhhc
Q 026763 136 ALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVT-------LLGDTLYLGSVVGATIVA-FGF-YSVIWG 198 (233)
Q Consensus 136 ~ia~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l-------~lgE~l~~~~iiG~~LIl-~Gv-~lv~~~ 198 (233)
++..+.++...++. +.|++.+++|++ ++|.+++..+..-..+++ +|+ |-++..
T Consensus 210 vivL~~~fr~~~~~----------llpL~~~l~sv~~tlG~m~llG~plt~~s~~~~~llIgiGidy~vh~~ 271 (727)
T COG1033 210 VIVLYYVFRSVRRA----------LLPLIIVLVSVLWTLGAMGLLGIPLTITTSAVPPLLIGIGIDYGVHFH 271 (727)
T ss_pred HHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHhhhhhhHHHHHH
Confidence 44455555554443 445544444443 468888888765555444 554 333433
No 199
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=22.43 E-value=6.1e+02 Score=24.46 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=10.4
Q ss_pred chhhhHHHHHHHHHHHHH
Q 026763 12 LAKSIGTMVSIAGALTVT 29 (233)
Q Consensus 12 ~~~~~G~~la~~G~~~l~ 29 (233)
..+++|++++.+-.++++
T Consensus 50 ~~R~~GT~iGa~~~~~lv 67 (650)
T PF04632_consen 50 LYRLIGTLIGAAAGLLLV 67 (650)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445677776655444443
No 200
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=22.33 E-value=3.7e+02 Score=25.20 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcceeeeccchH---HHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHH
Q 026763 129 CSAFFAVALRSLAHTWACHKKGPVYVSMYKPLG---IVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 195 (233)
Q Consensus 129 ~~gv~~s~ia~~l~~~~l~~~~~~~~s~~~~l~---Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv 195 (233)
-.|.+....|.+++.+..+|+|+.+++...... -+...+.+++..+.+. ..+...+.+.|+.+.
T Consensus 300 ~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~---~~~s~~~l~~gi~~S 366 (432)
T PF06963_consen 300 GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF---SSISAYLLLGGIALS 366 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHHHH
Confidence 455566688899999999999999999887663 3344455555555542 233344444455443
No 201
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=22.23 E-value=4.8e+02 Score=21.97 Aligned_cols=27 Identities=11% Similarity=-0.127 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCc
Q 026763 125 IAIGCSAFFAVALRSLAHTWACHKKGP 151 (233)
Q Consensus 125 ~~l~~~gv~~s~ia~~l~~~~l~~~~~ 151 (233)
...+..|+..+...-....+..+..+.
T Consensus 90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~ 116 (352)
T PF07690_consen 90 IARFLLGIGSGFFSPASNALIADWFPP 116 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred hhccccccccccccccccccccccchh
Confidence 344455665444433444444444554
No 202
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=22.02 E-value=88 Score=24.60 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=8.2
Q ss_pred hhhhHHHHHHHHHHH
Q 026763 181 SVVGATIVAFGFYSV 195 (233)
Q Consensus 181 ~iiG~~LIl~Gv~lv 195 (233)
.+.++.|..+|+-..
T Consensus 8 ~la~~aLaAAG~G~A 22 (137)
T PF12868_consen 8 DLAEAALAAAGAGYA 22 (137)
T ss_pred HHhHHHHHHHHHHHH
Confidence 355666666665443
No 203
>PRK11383 hypothetical protein; Provisional
Probab=21.81 E-value=4.1e+02 Score=21.08 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 026763 87 ELMATFICCVFVTIQSTVVALIA 109 (233)
Q Consensus 87 ~l~~t~~~~~~g~l~~~~~~~~~ 109 (233)
......|..++.++....+++..
T Consensus 11 af~~~sw~al~~g~~~y~iGLwn 33 (145)
T PRK11383 11 AFSIVSWIALVGGIVTYLLGLWN 33 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666666543
No 204
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=21.54 E-value=1.6e+02 Score=29.05 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHH
Q 026763 141 AHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVA 189 (233)
Q Consensus 141 l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl 189 (233)
+.....+........++..+.++.......-++|.+++........+++
T Consensus 209 ~l~~~~rs~~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~~~~~~~~l~l 257 (719)
T TIGR00921 209 VLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLI 257 (719)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3334445544444444444445444444455688888888766555543
No 205
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.32 E-value=72 Score=24.08 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=4.7
Q ss_pred HHHHHHHHhhc
Q 026763 188 VAFGFYSVIWG 198 (233)
Q Consensus 188 Il~Gv~lv~~~ 198 (233)
+++.+|....+
T Consensus 13 i~~i~yF~~iR 23 (109)
T PRK05886 13 IMGGFMYFASR 23 (109)
T ss_pred HHHHHHHHHcc
Confidence 33444544443
No 206
>PRK10734 putative calcium/sodium:proton antiporter; Provisional
Probab=21.19 E-value=1.7e+02 Score=26.16 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=10.9
Q ss_pred HHhCCccchhhhhhHHHH-HHHHHHH
Q 026763 171 TLLGDTLYLGSVVGATIV-AFGFYSV 195 (233)
Q Consensus 171 l~lgE~l~~~~iiG~~LI-l~Gv~lv 195 (233)
+..+++++. +-|..++ +..+|+.
T Consensus 118 ~~~~~~l~~--~~g~~ll~~~~~yl~ 141 (325)
T PRK10734 118 VLYDGQLSR--SDGIFLLLLAVLWLL 141 (325)
T ss_pred HHHCCcCcH--HHHHHHHHHHHHHHH
Confidence 334555654 3455543 3444543
No 207
>PF15471 TMEM171: Transmembrane protein family 171
Probab=20.93 E-value=59 Score=28.65 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=22.6
Q ss_pred hhhhhhHHHHHHHHHH--HhhcchhhhhhhccccccccC
Q 026763 179 LGSVVGATIVAFGFYS--VIWGQSEEEKMIDDKDIDSLK 215 (233)
Q Consensus 179 ~~~iiG~~LIl~Gv~l--v~~~~~~~~~~~~~~~~~~~~ 215 (233)
..|+.|-.++++|+-. +.--|+|+.-...||.+.++|
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr~nln~~qd~se~Ee 199 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKRNNLNGSQDASESEE 199 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeeccCCCcccCcccccc
Confidence 3589999999999733 333455555444455544443
No 208
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=20.90 E-value=3.6e+02 Score=24.70 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=12.1
Q ss_pred eccchHHHHHHHHHHHHh
Q 026763 156 MYKPLGIVFAIIMGVTLL 173 (233)
Q Consensus 156 ~~~~l~Pv~a~i~~~l~l 173 (233)
....+.|+.+.+...+++
T Consensus 384 p~~~~~~~l~~~~~~~~l 401 (442)
T TIGR00908 384 PGGILTPGVALVLACVAL 401 (442)
T ss_pred CCcchHHHHHHHHHHHHH
Confidence 444678888888775554
No 209
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=20.75 E-value=61 Score=26.80 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 157 YKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 157 ~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
+....|+..++.++...+++.+..+++..+++..|+....+.
T Consensus 10 ~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls 51 (222)
T TIGR00803 10 FKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLG 51 (222)
T ss_pred HHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhh
Confidence 344567788888888889988888899988888887764443
No 210
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=20.61 E-value=1.1e+02 Score=25.39 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=17.4
Q ss_pred HhCCccchhhhhhHHHHH-HHHHHH
Q 026763 172 LLGDTLYLGSVVGATIVA-FGFYSV 195 (233)
Q Consensus 172 ~lgE~l~~~~iiG~~LIl-~Gv~lv 195 (233)
++|=+++..++.|+++.+ .|+=+.
T Consensus 67 ~fgIsl~afrIaGGiiL~~ia~~ml 91 (201)
T TIGR00427 67 LFGISIDAFRIAGGILLFTIAMDML 91 (201)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888776 665543
No 211
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=20.13 E-value=3.6e+02 Score=21.04 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=21.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026763 55 NWIIGGLVLAAGSFFLSLLYIVQTSIIR 82 (233)
Q Consensus 55 ~~~~G~ll~l~aa~~~a~y~v~~~~~~~ 82 (233)
+.....+..++++..|.-|...++|..+
T Consensus 118 ~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 118 EAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 3456778888899999999888777643
No 212
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=20.05 E-value=3.9e+02 Score=20.07 Aligned_cols=51 Identities=12% Similarity=-0.002 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhc
Q 026763 58 IGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAE 110 (233)
Q Consensus 58 ~G~ll~l~aa~~~a~y~v~~~~~~~~~~~~l~~t~~~~~~g~l~~~~~~~~~~ 110 (233)
.-..+++.+++.+-++++..-...++. +|++.+.....-.. .....+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~t-S~lt~~v~~~~K~~-~~i~~s~~~f 129 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLT-SPLTYSVLGNVKRI-LVILLSVIFF 129 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-ChhHHHHHHHHHHH-HHHHHHhhhc
Confidence 445777778888888888777777765 57776644443333 3334444333
Done!