Query 026763
Match_columns 233
No_of_seqs 145 out of 1358
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 21:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.4 6.7E-13 2.3E-17 103.6 5.9 70 130-199 35-105 (137)
2 3b5d_A Multidrug transporter E 98.9 2.3E-09 8E-14 80.3 6.8 69 130-198 35-104 (110)
3 3b5d_A Multidrug transporter E 87.0 0.2 6.8E-06 36.6 1.2 29 2-30 75-103 (110)
4 2i68_A Protein EMRE; transmemb 80.0 0.63 2.2E-05 35.5 1.4 28 3-30 76-103 (137)
5 3l1l_A Arginine/agmatine antip 73.6 9.4 0.00032 33.4 7.6 46 156-201 385-430 (445)
6 4aps_A DI-OR tripeptide H+ sym 68.4 59 0.002 28.2 11.9 17 140-156 406-422 (491)
7 3rko_J NADH-quinone oxidoreduc 59.3 64 0.0022 25.5 13.8 24 166-189 127-150 (184)
8 1pw4_A Glycerol-3-phosphate tr 50.0 1.2E+02 0.004 25.6 13.0 25 128-152 354-378 (451)
9 2jp3_A FXYD domain-containing 46.9 18 0.00062 23.8 3.2 26 181-206 22-47 (67)
10 3o7q_A L-fucose-proton symport 45.3 1.4E+02 0.0047 25.1 10.8 21 65-85 69-89 (438)
11 3b9w_A Ammonium transporter fa 38.2 2.1E+02 0.0073 25.3 11.5 61 128-189 263-330 (407)
12 2rdd_B UPF0092 membrane protei 36.8 27 0.00091 20.0 2.5 15 186-200 10-24 (37)
13 4dx5_A Acriflavine resistance 33.7 72 0.0025 31.7 6.7 51 139-189 885-935 (1057)
14 4aps_A DI-OR tripeptide H+ sym 28.6 2.8E+02 0.0094 23.7 13.9 21 65-85 62-83 (491)
15 2jo1_A Phospholemman; FXYD1, N 28.5 49 0.0017 22.0 3.0 21 182-202 22-42 (72)
16 2zxe_G FXYD10, phospholemman-l 28.4 35 0.0012 22.9 2.3 25 181-205 24-48 (74)
17 3gia_A Uncharacterized protein 21.2 1.4E+02 0.0049 25.6 5.6 12 160-171 374-385 (444)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.36 E-value=6.7e-13 Score=103.59 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCcceeeec-cchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcc
Q 026763 130 SAFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 199 (233)
Q Consensus 130 ~gv~~s~ia~~l~~~~l~~~~~~~~s~~-~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~ 199 (233)
+++++++++|++|++++++.+++.+.++ ..+.|++++++|++++||++++.+++|+++|++|++++.+.+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5777889999999999999999999999 899999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.91 E-value=2.3e-09 Score=80.32 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCcceeeec-cchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhc
Q 026763 130 SAFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 198 (233)
Q Consensus 130 ~gv~~s~ia~~l~~~~l~~~~~~~~s~~-~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~ 198 (233)
.++++.+++|.+|.+++|+.+.+.+.++ ..+.|+.+.+++++++||++++.+++|.++|+.|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4666778999999999999999999888 79999999999999999999999999999999999987654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=87.02 E-value=0.2 Score=36.61 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=25.7
Q ss_pred cceecccccCchhhhHHHHHHHHHHHHHH
Q 026763 2 EKLDLRVQSSLAKSIGTMVSIAGALTVTL 30 (233)
Q Consensus 2 e~~~lke~~s~~~~~G~~la~~G~~~l~~ 30 (233)
..+++||++++.+++|+.+.++|++++..
T Consensus 75 ~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999988753
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=80.02 E-value=0.63 Score=35.46 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=19.6
Q ss_pred ceecccccCchhhhHHHHHHHHHHHHHH
Q 026763 3 KLDLRVQSSLAKSIGTMVSIAGALTVTL 30 (233)
Q Consensus 3 ~~~lke~~s~~~~~G~~la~~G~~~l~~ 30 (233)
.++++|+++..+++|+++.++|++++..
T Consensus 76 ~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 76 WGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999998864
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=73.64 E-value=9.4 Score=33.40 Aligned_cols=46 Identities=2% Similarity=-0.260 Sum_probs=24.7
Q ss_pred eccchHHHHHHHHHHHHhCCccchhhhhhHHHHHHHHHHHhhcchh
Q 026763 156 MYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 201 (233)
Q Consensus 156 ~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl~Gv~lv~~~~~~ 201 (233)
......|+++.+...+.+-..-......|.++++.|+.+..+.+++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 385 PAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp TTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred chhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666666665554432211223456777777887655444333
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=68.43 E-value=59 Score=28.16 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=9.1
Q ss_pred HHHHHhhhccCcceeee
Q 026763 140 LAHTWACHKKGPVYVSM 156 (233)
Q Consensus 140 ~l~~~~l~~~~~~~~s~ 156 (233)
..+.+..+..++...+.
T Consensus 406 ~~~~~~~~~~p~~~~g~ 422 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQ 422 (491)
T ss_dssp HHHHHHHHHTTTTCSSS
T ss_pred HHHHHHHHhCCHHHHHH
Confidence 34556666666554333
No 7
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=59.28 E-value=64 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.7
Q ss_pred HHHHHHHhCCccchhhhhhHHHHH
Q 026763 166 IIMGVTLLGDTLYLGSVVGATIVA 189 (233)
Q Consensus 166 ~i~~~l~lgE~l~~~~iiG~~LIl 189 (233)
--+|..++++-+-+.++++.+|.+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999998865
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=50.00 E-value=1.2e+02 Score=25.63 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcc
Q 026763 128 GCSAFFAVALRSLAHTWACHKKGPV 152 (233)
Q Consensus 128 ~~~gv~~s~ia~~l~~~~l~~~~~~ 152 (233)
...|+......-..+.+..+..++.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (451)
T 1pw4_A 354 IVIGFLIYGPVMLIGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHhchHHHHHHHHHHHhchh
Confidence 3344433333333445666666654
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=46.94 E-value=18 Score=23.84 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHhhcchhhhhhh
Q 026763 181 SVVGATIVAFGFYSVIWGQSEEEKMI 206 (233)
Q Consensus 181 ~iiG~~LIl~Gv~lv~~~~~~~~~~~ 206 (233)
.+++++|.++|+.+...+|=|.+..+
T Consensus 22 LifA~vLfi~GI~iilS~kcrCk~~q 47 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCKCRRNH 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHcCcccccCCC
Confidence 35667778888888777765555444
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=45.27 E-value=1.4e+02 Score=25.10 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 026763 65 AGSFFLSLLYIVQTSIIREYP 85 (233)
Q Consensus 65 ~aa~~~a~y~v~~~~~~~~~~ 85 (233)
...+.+.+.....-++.+|+.
T Consensus 69 ~~~~~~~i~~~~~G~l~dr~g 89 (438)
T 3o7q_A 69 AFYFGYFIIPIPAGILMKKLS 89 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhHHHHHHHhc
Confidence 344444455555556666664
No 11
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=38.16 E-value=2.1e+02 Score=25.33 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHh-------hhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHH
Q 026763 128 GCSAFFAVALRSLAHTWA-------CHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVA 189 (233)
Q Consensus 128 ~~~gv~~s~ia~~l~~~~-------l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl 189 (233)
+..|+++..++++...+. ++.=++.-+-..-.+-=+++.++.-++- ...+..|++|.+.++
T Consensus 263 ~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa-~~~~~~Ql~g~~~~~ 330 (407)
T 3b9w_A 263 FVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIV-PGIAVAQLTGIGITL 330 (407)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHc-cCCcHHHHHHHHHHH
Confidence 456777777777766532 2223455555555556667766665443 333557888887763
No 12
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=36.80 E-value=27 Score=20.01 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhcch
Q 026763 186 TIVAFGFYSVIWGQS 200 (233)
Q Consensus 186 ~LIl~Gv~lv~~~~~ 200 (233)
+++++..|....+.+
T Consensus 10 v~~~~ifYFl~iRPQ 24 (37)
T 2rdd_B 10 VVFGLIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhhhH
Confidence 333344444444433
No 13
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=33.66 E-value=72 Score=31.68 Aligned_cols=51 Identities=16% Similarity=-0.048 Sum_probs=33.6
Q ss_pred HHHHHHhhhccCcceeeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHH
Q 026763 139 SLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVA 189 (233)
Q Consensus 139 ~~l~~~~l~~~~~~~~s~~~~l~Pv~a~i~~~l~lgE~l~~~~iiG~~LIl 189 (233)
|.+.....+........++.....+.+.+.+..++|.+++...++|.++++
T Consensus 885 ~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 885 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 444444455555555555555555567777778899999999888876653
No 14
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=28.59 E-value=2.8e+02 Score=23.69 Aligned_cols=21 Identities=5% Similarity=-0.146 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC
Q 026763 65 AGSFFLSLLYIVQTSIIRE-YP 85 (233)
Q Consensus 65 ~aa~~~a~y~v~~~~~~~~-~~ 85 (233)
...+...+.....-++.++ +.
T Consensus 62 ~~~~~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 62 IYASMVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3444455555555666666 44
No 15
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.52 E-value=49 Score=21.99 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHhhcchhh
Q 026763 182 VVGATIVAFGFYSVIWGQSEE 202 (233)
Q Consensus 182 iiG~~LIl~Gv~lv~~~~~~~ 202 (233)
++++++.++|+++...++=+.
T Consensus 22 ifA~vLfi~GI~iilS~KckC 42 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRC 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccc
Confidence 566677778887776655433
No 16
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=28.36 E-value=35 Score=22.87 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHhhcchhhhhh
Q 026763 181 SVVGATIVAFGFYSVIWGQSEEEKM 205 (233)
Q Consensus 181 ~iiG~~LIl~Gv~lv~~~~~~~~~~ 205 (233)
.+++++|.++|+.+...+|=|-+..
T Consensus 24 LifA~vLfi~GI~iilS~kcrCk~~ 48 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCRCKFN 48 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC------
T ss_pred chhHHHHHHHHHHHHHcCccccCCC
Confidence 3566777888888877766554433
No 17
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=21.20 E-value=1.4e+02 Score=25.60 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHH
Q 026763 160 LGIVFAIIMGVT 171 (233)
Q Consensus 160 l~Pv~a~i~~~l 171 (233)
..|+++++...+
T Consensus 374 ~~~~~~~~~~~~ 385 (444)
T 3gia_A 374 EIVIFSFIVVLG 385 (444)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 455555544443
Done!