Your job contains 1 sequence.
>026764
MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK
PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV
TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE
KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026764
(233 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2031576 - symbol:AT1G74050 species:3702 "Arabi... 783 7.9e-78 1
TAIR|locus:2031561 - symbol:AT1G74060 species:3702 "Arabi... 782 1.0e-77 1
TAIR|locus:2027483 - symbol:AT1G18540 species:3702 "Arabi... 781 1.3e-77 1
MGI|MGI:108057 - symbol:Rpl6 "ribosomal protein L6" speci... 369 2.2e-42 2
UNIPROTKB|F1Q424 - symbol:RPL6 "60S ribosomal protein L6"... 368 1.2e-41 2
UNIPROTKB|Q8UWG7 - symbol:RPL6 "60S ribosomal protein L6"... 373 2.0e-41 2
UNIPROTKB|Q2YGT9 - symbol:RPL6 "60S ribosomal protein L6"... 369 2.0e-41 2
RGD|619826 - symbol:Rpl6 "ribosomal protein L6" species:1... 367 5.2e-41 2
UNIPROTKB|F1LQS3 - symbol:Rpl6 "60S ribosomal protein L6"... 367 5.2e-41 2
UNIPROTKB|H7C5Y5 - symbol:H7C5Y5 "60S ribosomal protein L... 367 5.2e-41 2
UNIPROTKB|Q02878 - symbol:RPL6 "60S ribosomal protein L6"... 362 5.2e-41 2
UNIPROTKB|Q58DQ3 - symbol:RPL6 "60S ribosomal protein L6"... 364 1.1e-40 2
ZFIN|ZDB-GENE-030131-8671 - symbol:rpl6 "ribosomal protei... 340 3.2e-39 2
UNIPROTKB|G3N2R1 - symbol:G3N2R1 "60S ribosomal protein L... 343 1.7e-38 2
UNIPROTKB|J9PA17 - symbol:J9PA17 "60S ribosomal protein L... 345 7.3e-38 2
SGD|S000004440 - symbol:RPL6B "Ribosomal 60S subunit prot... 395 1.0e-36 1
SGD|S000004538 - symbol:RPL6A "Ribosomal 60S subunit prot... 382 2.4e-35 1
ASPGD|ASPL0000060399 - symbol:AN1166 species:162425 "Emer... 380 4.0e-35 1
UNIPROTKB|F1LVJ5 - symbol:F1LVJ5 "Uncharacterized protein... 302 6.3e-35 2
UNIPROTKB|G4MSC0 - symbol:MGG_04444 "60S ribosomal protei... 371 3.6e-34 1
UNIPROTKB|F1LUV7 - symbol:F1LUV7 "Uncharacterized protein... 225 7.0e-34 3
POMBASE|SPCC622.18 - symbol:rpl6 "60S ribosomal protein L... 363 2.5e-33 1
UNIPROTKB|F1M2R6 - symbol:F1M2R6 "Uncharacterized protein... 232 7.6e-33 3
UNIPROTKB|F8W181 - symbol:RPL6 "60S ribosomal protein L6"... 352 3.7e-32 1
DICTYBASE|DDB_G0292460 - symbol:rpl6 "60S ribosomal prote... 351 4.7e-32 1
WB|WBGene00004417 - symbol:rpl-6 species:6239 "Caenorhabd... 302 1.6e-30 2
UNIPROTKB|P47991 - symbol:rpl-6 "60S ribosomal protein L6... 302 1.6e-30 2
FB|FBgn0039857 - symbol:RpL6 "Ribosomal protein L6" speci... 305 3.5e-27 1
RGD|1590802 - symbol:LOC367276 "similar to 60S ribosomal ... 206 4.0e-26 2
UNIPROTKB|J9NU22 - symbol:J9NU22 "60S ribosomal protein L... 274 6.8e-24 1
UNIPROTKB|F1M4J7 - symbol:F1M4J7 "Uncharacterized protein... 186 5.2e-21 2
UNIPROTKB|F1M2L7 - symbol:F1M2L7 "Uncharacterized protein... 179 2.8e-20 2
GENEDB_PFALCIPARUM|PF13_0213 - symbol:PF13_0213 "60S ribo... 184 2.3e-17 2
UNIPROTKB|Q8IDV1 - symbol:PF13_0213 "60S ribosomal protei... 184 2.3e-17 2
UNIPROTKB|J9P4W9 - symbol:J9P4W9 "Uncharacterized protein... 200 4.7e-16 1
UNIPROTKB|F8VR69 - symbol:RPL6 "60S ribosomal protein L6"... 167 1.5e-12 1
UNIPROTKB|F8VZ45 - symbol:RPL6 "60S ribosomal protein L6"... 99 2.5e-10 2
UNIPROTKB|F8VRY1 - symbol:RPL6 "60S ribosomal protein L6"... 90 0.00047 1
UNIPROTKB|F8VWR1 - symbol:RPL6 "60S ribosomal protein L6"... 90 0.00047 1
UNIPROTKB|F8VZA3 - symbol:RPL6 "60S ribosomal protein L6"... 90 0.00047 1
>TAIR|locus:2031576 [details] [associations]
symbol:AT1G74050 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159
Pfam:PF03868 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
GO:GO:0009506 GO:GO:0006412 GO:GO:0003735 EMBL:AC016662
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625
HOGENOM:HOG000207317 KO:K02934 ProtClustDB:CLSN2682203
PANTHER:PTHR10715 UniGene:At.25310 EMBL:AY054573 EMBL:AY081305
EMBL:AY114641 EMBL:AY087325 IPI:IPI00543748 PIR:D96768
RefSeq:NP_177545.1 ProteinModelPortal:Q9C9C5 SMR:Q9C9C5
IntAct:Q9C9C5 STRING:Q9C9C5 PRIDE:Q9C9C5 EnsemblPlants:AT1G74050.1
GeneID:843744 KEGG:ath:AT1G74050 GeneFarm:395 TAIR:At1g74050
InParanoid:Q9C9C5 OMA:EHINDAY PhylomeDB:Q9C9C5
Genevestigator:Q9C9C5 GermOnline:AT1G74050 Uniprot:Q9C9C5
Length = 233
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 158/233 (67%), Positives = 172/233 (73%)
Query: 1 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXX 60
M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD
Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 XXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
FYPA+DVKKPL N+R KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXX 180
TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180
Query: 181 XXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+P KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 181 KEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
>TAIR|locus:2031561 [details] [associations]
symbol:AT1G74060 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005730 GO:GO:0006412 GO:GO:0003735
EMBL:AC016662 Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934
ProtClustDB:CLSN2682203 PANTHER:PTHR10715 EMBL:AY062622
EMBL:BT002588 IPI:IPI00539595 PIR:E96768 RefSeq:NP_177546.1
UniGene:At.24044 UniGene:At.25310 ProteinModelPortal:Q9C9C6
SMR:Q9C9C6 STRING:Q9C9C6 PaxDb:Q9C9C6 PRIDE:Q9C9C6
EnsemblPlants:AT1G74060.1 GeneID:843746 KEGG:ath:AT1G74060
GeneFarm:392 TAIR:At1g74060 InParanoid:Q9C9C6 OMA:KYELTEQ
PhylomeDB:Q9C9C6 Genevestigator:Q9C9C6 GermOnline:AT1G74060
Uniprot:Q9C9C6
Length = 233
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 157/233 (67%), Positives = 171/233 (73%)
Query: 1 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXX 60
M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD
Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 XXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
FYPA+DVKKPL N+R KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXX 180
TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180
Query: 181 XXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+P KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 181 KEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
>TAIR|locus:2027483 [details] [associations]
symbol:AT1G18540 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 GO:GO:0005783 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0009507
GO:GO:0006412 GO:GO:0003735 EMBL:AC026238 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0022625 eggNOG:COG2163 EMBL:AY054675
EMBL:AY072496 IPI:IPI00522202 PIR:H86318 RefSeq:NP_173289.1
UniGene:At.24719 UniGene:At.70629 ProteinModelPortal:Q9FZ76
SMR:Q9FZ76 STRING:Q9FZ76 PaxDb:Q9FZ76 PRIDE:Q9FZ76
EnsemblPlants:AT1G18540.1 GeneID:838435 KEGG:ath:AT1G18540
GeneFarm:394 TAIR:At1g18540 HOGENOM:HOG000207317 InParanoid:Q9FZ76
KO:K02934 OMA:VSGPFKV PhylomeDB:Q9FZ76 ProtClustDB:CLSN2682203
Genevestigator:Q9FZ76 GermOnline:AT1G18540 PANTHER:PTHR10715
Uniprot:Q9FZ76
Length = 233
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 154/227 (67%), Positives = 173/227 (76%)
Query: 7 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYP 66
T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYP
Sbjct: 7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYP 66
Query: 67 ADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKV 126
A+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+
Sbjct: 67 AEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKI 126
Query: 127 NGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXV 186
NGVPLRRVNQ+YVI TSTK+DISGV+ KFDD+YF
Sbjct: 127 NGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKE 186
Query: 187 LPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+P +KK+DQKTVDA LIKSIEAV +LK YL ARFSL GMKPHELVF
Sbjct: 187 IPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
>MGI|MGI:108057 [details] [associations]
symbol:Rpl6 "ribosomal protein L6" species:10090 "Mus
musculus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISA] [GO:0005730 "nucleolus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=ISA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
MGI:MGI:108057 GO:GO:0005737 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715
OMA:KYELTEQ CTD:6128 HOVERGEN:HBG002565 OrthoDB:EOG4W0XDZ
EMBL:AF374195 EMBL:BC062880 EMBL:X81987 IPI:IPI00313222 PIR:S55922
RefSeq:NP_035420.2 UniGene:Mm.262021 ProteinModelPortal:P47911
SMR:P47911 IntAct:P47911 STRING:P47911 PhosphoSite:P47911
PaxDb:P47911 PRIDE:P47911 Ensembl:ENSMUST00000031617 GeneID:19988
KEGG:mmu:19988 InParanoid:P47911 NextBio:297499 Bgee:P47911
CleanEx:MM_RPL6 Genevestigator:P47911 GermOnline:ENSMUSG00000029614
Uniprot:P47911
Length = 296
Score = 369 (135.0 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLL
Sbjct: 123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLL 181
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTKVDIS V + K D YF
Sbjct: 182 LVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIF 241
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD Q++ I+AV L+ YL ++FSL +GM PH+LVF
Sbjct: 242 DTEKEKYEIT-EQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296
Score = 96 (38.9 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
PK A SRNP L+RG+G++SRS MY ++ L+ K
Sbjct: 44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 79
>UNIPROTKB|F1Q424 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
KO:K02934 PANTHER:PTHR10715 OMA:KYELTEQ
GeneTree:ENSGT00390000003682 CTD:6128 EMBL:AAEX03014681
EMBL:AAEX03026381 RefSeq:XP_534685.2 UniGene:Cfa.39611
Ensembl:ENSCAFT00000014100 Ensembl:ENSCAFT00000025489 GeneID:403691
KEGG:cfa:403691 NextBio:20817195 Uniprot:F1Q424
Length = 288
Score = 368 (134.6 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 85/176 (48%), Positives = 110/176 (62%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL+SGLL
Sbjct: 115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLL 173
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTK+DIS V + K D YF
Sbjct: 174 LVTGPLALNRVPLRRTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKKLRKPRHQEGEIF 233
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q++ I+AV L+ YL + FSL +G+ PH+LVF
Sbjct: 234 DTEKEKYEIT-EQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFSLTNGVYPHKLVF 288
Score = 90 (36.7 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
PK SRNP L+RG+G++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
>UNIPROTKB|Q8UWG7 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
PROSITE:PS01170 EMBL:AY032864 GO:GO:0006412 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625 eggNOG:COG2163
HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715 OMA:KYELTEQ
GeneTree:ENSGT00390000003682 CTD:6128 HOVERGEN:HBG002565
OrthoDB:EOG4W0XDZ EMBL:AADN02034946 EMBL:AADN02034947
IPI:IPI00579078 RefSeq:NP_989483.1 UniGene:Gga.3486 STRING:Q8UWG7
Ensembl:ENSGALT00000007692 GeneID:373957 KEGG:gga:373957
InParanoid:Q8UWG7 NextBio:20813488 Uniprot:Q8UWG7
Length = 298
Score = 373 (136.4 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 87/176 (49%), Positives = 109/176 (61%)
Query: 64 FYPADDVKKPLVNKRK-----HKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K HK +LRASITPGTV ILL GR GKRVVFLKQL +GLL
Sbjct: 125 YYPTEDVPRKLLSHGKKPFSQHK-RRLRASITPGTVLILLTGRHRGKRVVFLKQLGTGLL 183
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP VN VPLRR +Q +VIATSTKVDISGV + K D YF
Sbjct: 184 LVTGPLAVNRVPLRRAHQKFVIATSTKVDISGVKIPKHLTDAYFKKKKLRKPKHQEGEIF 243
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q++ I+ V L+ YL + FSL +G+ PH+LVF
Sbjct: 244 DTEKEKYEIT-EQRKTDQKAVDSQILARIKKVPQLRGYLRSTFSLSNGVYPHKLVF 298
Score = 83 (34.3 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
SRNP L RG+GK+SRS MY ++ L+ K
Sbjct: 55 SRNPVLARGIGKYSRSAMYARKALYKRK 82
>UNIPROTKB|Q2YGT9 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
PROSITE:PS01170 GO:GO:0006412 GO:GO:0003735 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0022625 eggNOG:COG2163 KO:K02934
PANTHER:PTHR10715 OMA:KYELTEQ GeneTree:ENSGT00390000003682 CTD:6128
HOVERGEN:HBG002565 EMBL:AY735452 RefSeq:NP_001038007.1
UniGene:Ssc.1062 UniGene:Ssc.86910 ProteinModelPortal:Q2YGT9
PRIDE:Q2YGT9 Ensembl:ENSSSCT00000024558 GeneID:733592
KEGG:ssc:733592 Uniprot:Q2YGT9
Length = 284
Score = 369 (135.0 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 83/176 (47%), Positives = 112/176 (63%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRV+FLKQL+SGLL
Sbjct: 111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLL 169
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTK+DISGV + + D YF
Sbjct: 170 LVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIF 229
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q+++ I+AV L+ YL + F+L +G+ PH+LVF
Sbjct: 230 DTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
Score = 87 (35.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 2 APKAATGRT--SRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
A K G+ SRNP L+RG+G++SRS MY ++ L+ K
Sbjct: 30 AKKVKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 68
>RGD|619826 [details] [associations]
symbol:Rpl6 "ribosomal protein L6" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170 RGD:619826 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715
CTD:6128 HOVERGEN:HBG002565 OrthoDB:EOG4W0XDZ EMBL:X87107
EMBL:BC078761 EMBL:BC097295 EMBL:S71021 IPI:IPI00390343 PIR:S11416
PIR:T50782 RefSeq:NP_446423.2 UniGene:Rn.232089 UniGene:Rn.2660
ProteinModelPortal:P21533 IntAct:P21533 STRING:P21533 PRIDE:P21533
GeneID:117042 KEGG:rno:117042 UCSC:RGD:619826 NextBio:619851
ArrayExpress:P21533 Genevestigator:P21533
GermOnline:ENSRNOG00000025936 Uniprot:P21533
Length = 298
Score = 367 (134.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 86/176 (48%), Positives = 110/176 (62%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLL
Sbjct: 125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 183
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTKVDIS V + K D YF
Sbjct: 184 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 243
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q++ I+AV L+ YL ++FSL +GM PH+LVF
Sbjct: 244 DTEKEKYEIT-EQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
Score = 85 (35.0 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
SRNP L+RG+G++SRS MY ++ L+ K
Sbjct: 54 SRNPVLVRGIGRYSRSAMYSRKALYKRK 81
>UNIPROTKB|F1LQS3 [details] [associations]
symbol:Rpl6 "60S ribosomal protein L6" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
RGD:619826 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 PANTHER:PTHR10715 OMA:KYELTEQ
GeneTree:ENSGT00390000003682 IPI:IPI00231609 PRIDE:F1LQS3
Ensembl:ENSRNOT00000050204 ArrayExpress:F1LQS3 Uniprot:F1LQS3
Length = 298
Score = 367 (134.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 86/176 (48%), Positives = 110/176 (62%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLL
Sbjct: 125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 183
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTKVDIS V + K D YF
Sbjct: 184 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 243
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q++ I+AV L+ YL ++FSL +GM PH+LVF
Sbjct: 244 DTEKEKYEIT-EQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
Score = 85 (35.0 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
SRNP L+RG+G++SRS MY ++ L+ K
Sbjct: 54 SRNPVLVRGIGRYSRSAMYSRKALYKRK 81
>UNIPROTKB|H7C5Y5 [details] [associations]
symbol:H7C5Y5 "60S ribosomal protein L6" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30
InterPro:IPR014722 PANTHER:PTHR10715 GeneTree:ENSGT00390000003682
Ensembl:ENSRNOT00000034951 Uniprot:H7C5Y5
Length = 297
Score = 367 (134.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 86/176 (48%), Positives = 110/176 (62%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLL
Sbjct: 124 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 182
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTKVDIS V + K D YF
Sbjct: 183 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 242
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q++ I+AV L+ YL ++FSL +GM PH+LVF
Sbjct: 243 DTEKEKYEIT-EQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 297
Score = 85 (35.0 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
SRNP L+RG+G++SRS MY ++ L+ K
Sbjct: 53 SRNPVLVRGIGRYSRSAMYSRKALYKRK 80
>UNIPROTKB|Q02878 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS]
[GO:0006415 "translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
PROSITE:PS01170 Reactome:REACT_116125 GO:GO:0000184 GO:GO:0006355
GO:GO:0003677 GO:GO:0006413 GO:GO:0003723 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0006415 GO:GO:0006414
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625 GO:GO:0019083
eggNOG:COG2163 KO:K02934 PANTHER:PTHR10715 OMA:KYELTEQ CTD:6128
HOVERGEN:HBG002565 OrthoDB:EOG4W0XDZ EMBL:X69391 EMBL:D17554
EMBL:AB042820 EMBL:BC004138 EMBL:BC020679 EMBL:BC032299
EMBL:BC071912 EMBL:BC104824 EMBL:BC104826 EMBL:S71022
IPI:IPI00790342 PIR:I51803 PIR:S33714 RefSeq:NP_000961.2
RefSeq:NP_001019833.1 UniGene:Hs.546283 UniGene:Hs.703523
ProteinModelPortal:Q02878 SMR:Q02878 DIP:DIP-27547N IntAct:Q02878
MINT:MINT-1159780 STRING:Q02878 PhosphoSite:Q02878 DMDM:1350762
SWISS-2DPAGE:Q02878 PaxDb:Q02878 PRIDE:Q02878 DNASU:6128
Ensembl:ENST00000202773 Ensembl:ENST00000424576 GeneID:6128
KEGG:hsa:6128 UCSC:uc001ttu.3 GeneCards:GC12M112842
H-InvDB:HIX0164072 HGNC:HGNC:10362 MIM:603703 neXtProt:NX_Q02878
PharmGKB:PA34758 InParanoid:Q02878 PhylomeDB:Q02878 ChiTaRS:RPL6
GenomeRNAi:6128 NextBio:23799 ArrayExpress:Q02878 Bgee:Q02878
CleanEx:HS_RPL6 Genevestigator:Q02878 GermOnline:ENSG00000089009
Uniprot:Q02878
Length = 288
Score = 362 (132.5 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 83/176 (47%), Positives = 109/176 (61%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLL
Sbjct: 115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLL 173
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTK+DIS V + K D YF
Sbjct: 174 LVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIF 233
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q++ I+A+ L+ YL + F+L +G+ PH+LVF
Sbjct: 234 DTEKEKYEIT-EQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
Score = 90 (36.7 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
PK SRNP L+RG+G++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
>UNIPROTKB|Q58DQ3 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715
OMA:KYELTEQ GeneTree:ENSGT00390000003682 EMBL:BT021543
EMBL:BT021544 EMBL:AY911360 EMBL:BC133430 IPI:IPI00717048
RefSeq:NP_001026926.1 UniGene:Bt.62205 ProteinModelPortal:Q58DQ3
STRING:Q58DQ3 PRIDE:Q58DQ3 Ensembl:ENSBTAT00000033359 GeneID:511051
KEGG:bta:511051 CTD:6128 HOVERGEN:HBG002565 InParanoid:Q58DQ3
OrthoDB:EOG4W0XDZ NextBio:20869748 Uniprot:Q58DQ3
Length = 287
Score = 364 (133.2 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 83/176 (47%), Positives = 111/176 (63%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLL
Sbjct: 114 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLL 172
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTK+DISGV + + D YF
Sbjct: 173 LVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIF 232
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q+++ I+AV L+ YL + F+L +G+ PH++VF
Sbjct: 233 DTEREKYEIT-EQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287
Score = 85 (35.0 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
SRNP L+RG+G++SRS MY ++ L+ K
Sbjct: 44 SRNPVLVRGIGRYSRSAMYSRKALYKRK 71
>ZFIN|ZDB-GENE-030131-8671 [details] [associations]
symbol:rpl6 "ribosomal protein L6" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0009790 "embryo development" evidence=IMP] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
ZFIN:ZDB-GENE-030131-8671 GO:GO:0006412 GO:GO:0005840 GO:GO:0009790
GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 KO:K02934
PANTHER:PTHR10715 CTD:6128 HOVERGEN:HBG002565 EMBL:AY648833
IPI:IPI00481915 RefSeq:NP_001003844.1 UniGene:Dr.28231
ProteinModelPortal:Q6DRC6 STRING:Q6DRC6 PRIDE:Q6DRC6 GeneID:336727
KEGG:dre:336727 InParanoid:Q6DRC6 NextBio:20811876
ArrayExpress:Q6DRC6 Bgee:Q6DRC6 Uniprot:Q6DRC6
Length = 265
Score = 340 (124.7 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 80/176 (45%), Positives = 106/176 (60%)
Query: 64 FYPADDVKKPLVNK-----RKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV++ L + +H+ KLR +IT GTV I+L GR GKRVVFLKQL SGLL
Sbjct: 92 YYPTEDVRRKLRSHGIKAFSQHR-RKLRKTITLGTVLIMLTGRHRGKRVVFLKQLDSGLL 150
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q + IAT+TKVDISG+ + + D YF
Sbjct: 151 LVTGPLAINRVPLRRAHQKFCIATNTKVDISGMKIPRTLTDSYFKKKKLRKPKHQEGEIF 210
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
L + +K DQK VD+QL+ I+ V L+ YL + FSL +G+ PH+LVF
Sbjct: 211 DTEKEKYQ-LTEQRKADQKAVDSQLLPLIKKVPQLRGYLRSMFSLSNGVYPHKLVF 265
Score = 95 (38.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 4 KAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAK 40
K A SRNP+L+RG+G++SRS M+ +R ++ K K
Sbjct: 8 KVARKHGSRNPELVRGIGRYSRSAMFARRAMYKRKTK 44
>UNIPROTKB|G3N2R1 [details] [associations]
symbol:G3N2R1 "60S ribosomal protein L6" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 EMBL:DAAA02039957
ProteinModelPortal:G3N2R1 Ensembl:ENSBTAT00000049290 OMA:INDEYFR
NextBio:20925613 Uniprot:G3N2R1
Length = 287
Score = 343 (125.8 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 80/176 (45%), Positives = 108/176 (61%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP KLRA ITPGT+ I+L G GKRVVFLKQL SGLL
Sbjct: 114 YYPTEDVPRKLLSHGK-KPFSKHVRKLRAIITPGTILIILTGCHRGKRVVFLKQLGSGLL 172
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTK+DIS V + + D YF
Sbjct: 173 LVTGPLSLNQVPLRRTHQKFVIATSTKIDISDVKIPEHLTDTYFKKKKLLKPRHQEGEIF 232
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q+++ I+AV L+ YL + F+L +G+ PH++VF
Sbjct: 233 DTEREKYEIT-EQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287
Score = 85 (35.0 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
SRNP L+RG+G++SRS MY ++ L+ K
Sbjct: 44 SRNPVLVRGIGRYSRSAMYSRKALYKRK 71
>UNIPROTKB|J9PA17 [details] [associations]
symbol:J9PA17 "60S ribosomal protein L6" species:9615
"Canis lupus familiaris" [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30
InterPro:IPR014722 PANTHER:PTHR10715 GeneTree:ENSGT00390000003682
EMBL:AAEX03016401 Ensembl:ENSCAFT00000012482 OMA:YKASATR
Uniprot:J9PA17
Length = 289
Score = 345 (126.5 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 82/175 (46%), Positives = 106/175 (60%)
Query: 64 FYPADDVK-KPLVNKRK---HKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLL 119
+ P +DV K L + RK + KLRASITPGT+ I L GR GKRVVFLKQL+SGLLL
Sbjct: 116 YCPTEDVPCKLLSHGRKPFSQRVRKLRASITPGTILITLTGRHRGKRVVFLKQLSSGLLL 175
Query: 120 VTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXX 178
VT P +N VPLRR +Q +VIATSTK+D+S V + K D YF
Sbjct: 176 VTAPLALNRVPLRRTHQKFVIATSTKIDVSSVKIPKHLTDAYFKKKKLHKPRHREGEIFD 235
Query: 179 XXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQK VD+Q++ I+AV L+ YL + FSL +G+ PH+LVF
Sbjct: 236 TEKEKYEIT-EQRKVDQKAVDSQILPKIKAVPQLQGYLPSVFSLTNGVYPHKLVF 289
Score = 77 (32.2 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 3 PKAATGRTSRNPDLIRGVGKFS------RSKMYHKRGLWAIKAK 40
PK SR+P L+RG+G+FS R MY KR WA K++
Sbjct: 38 PKKGKPHCSRSPVLVRGIGRFSPWAVYSRKAMY-KRKYWAAKSR 80
>SGD|S000004440 [details] [associations]
symbol:RPL6B "Ribosomal 60S subunit protein L6B" species:4932
"Saccharomyces cerevisiae" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0002181 "cytoplasmic
translation" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IMP] InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170
SGD:S000004440 EMBL:BK006945 GO:GO:0003723 GO:GO:0003735
GO:GO:0002181 GO:GO:0000027 Gene3D:2.30.30.30 InterPro:IPR014722
EMBL:U22382 GO:GO:0022625 HOGENOM:HOG000207317 KO:K02934
OMA:VSGPFKV PANTHER:PTHR10715 GeneTree:ENSGT00390000003682
OrthoDB:EOG4T4H4S EMBL:D10226 PIR:S55970 RefSeq:NP_013553.1
ProteinModelPortal:P05739 SMR:P05739 DIP:DIP-4591N IntAct:P05739
MINT:MINT-490611 STRING:P05739 PeptideAtlas:P05739
EnsemblFungi:YLR448W GeneID:851169 KEGG:sce:YLR448W NextBio:967975
Genevestigator:P05739 GermOnline:YLR448W Uniprot:P05739
Length = 176
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 86/170 (50%), Positives = 106/170 (62%)
Query: 64 FYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGP 123
+YP++DV P ++ +P KLRAS+ PGTV ILLAGRF GKRVV+LK L LLVTGP
Sbjct: 9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGP 68
Query: 124 FKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXX 183
FKVNGVPLRRVN YVIATSTKV + GV++ KF+ +YF
Sbjct: 69 FKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQTK 128
Query: 184 XXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ ++ +DQK VD L+ I+ LK YLSA FSLK+G KPH L F
Sbjct: 129 E--IKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
>SGD|S000004538 [details] [associations]
symbol:RPL6A "Ribosomal 60S subunit protein L6A" species:4932
"Saccharomyces cerevisiae" [GO:0005840 "ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0002181 "cytoplasmic translation" evidence=IDA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170 SGD:S000004538
GO:GO:0003723 EMBL:BK006946 GO:GO:0003735 GO:GO:0002181 PDB:4B6A
PDBsum:4B6A EMBL:Z46373 GO:GO:0000027 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0022625 PDB:3IZS PDB:3O58 PDB:3O5H
PDB:3U5E PDB:3U5I PDBsum:3IZS PDBsum:3O58 PDBsum:3O5H PDBsum:3U5E
PDBsum:3U5I eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934
PANTHER:PTHR10715 EMBL:D10225 PIR:S28944 RefSeq:NP_013638.1
ProteinModelPortal:Q02326 SMR:Q02326 IntAct:Q02326
MINT:MINT-1325508 STRING:Q02326 PaxDb:Q02326 PeptideAtlas:Q02326
EnsemblFungi:YML073C GeneID:854902 KEGG:sce:YML073C
GeneTree:ENSGT00390000003682 OMA:VYLAARF OrthoDB:EOG4T4H4S
NextBio:977882 Genevestigator:Q02326 GermOnline:YML073C
Uniprot:Q02326
Length = 176
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 84/170 (49%), Positives = 105/170 (61%)
Query: 64 FYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGP 123
+YP++DV ++ +P KLRAS+ PGTV ILLAGRF GKRVV+LK L LL++GP
Sbjct: 9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGP 68
Query: 124 FKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXX 183
FKVNGVPLRRVN YVIATSTKV + GV++ KF+ +YF
Sbjct: 69 FKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQNK 128
Query: 184 XXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ ++ +DQK VD LI I+ LK YLSA FSLK+G KPH L F
Sbjct: 129 E--IKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
>ASPGD|ASPL0000060399 [details] [associations]
symbol:AN1166 species:162425 "Emericella nidulans"
[GO:0002181 "cytoplasmic translation" evidence=IEA] [GO:0000027
"ribosomal large subunit assembly" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR000915 Pfam:PF01159 EMBL:BN001308 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
HOGENOM:HOG000207317 PANTHER:PTHR10715 OMA:EHINDAY
EnsemblFungi:CADANIAT00001460 Uniprot:C8VT28
Length = 198
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 83/172 (48%), Positives = 104/172 (60%)
Query: 64 FYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGP 123
+YP DD +P ++ +PTKLR S+ PGTV ILLAGRF GKRVV LK L G+LLVTGP
Sbjct: 25 WYPVDDESQPKKVRKAIRPTKLRESLQPGTVLILLAGRFRGKRVVLLKHLDQGVLLVTGP 84
Query: 124 FKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQ----YFXXXXXXXXXXXXXXXXXX 179
FK+NGVPLRRVN YVIATST++DISGVD + YF
Sbjct: 85 FKINGVPLRRVNARYVIATSTRIDISGVDSQTIEKVSAPGYFTKEKKNEKKTEEAFFKQG 144
Query: 180 XXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHEL 231
V+ + DQK VD ++ SI+ L +YL+A FSL++G KPHE+
Sbjct: 145 EKPEKKVVASARASDQKAVDQSILASIKKEAFLGSYLAATFSLRNGDKPHEM 196
>UNIPROTKB|F1LVJ5 [details] [associations]
symbol:F1LVJ5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 IPI:IPI00562540
Ensembl:ENSRNOT00000017932 OMA:YPTEDAP Uniprot:F1LVJ5
Length = 291
Score = 302 (111.4 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 72/173 (41%), Positives = 96/173 (55%)
Query: 64 FYPADDVKKPLVNKRK----HKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLL 119
+YP D + L+++ K +LR+SITPGTV I+L GR GKRVVFLKQL SGLLL
Sbjct: 123 YYPTTDAPRKLLSQGKTPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLL 182
Query: 120 VTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXX 179
VTGP +N VPL R +VIATSTKVDI V + K
Sbjct: 183 VTGPLALNRVPLHRTQLKFVIATSTKVDIGEVKIPKH-----LTDTTSRRSRGEESEIFD 237
Query: 180 XXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELV 232
+ + K +QK VD+Q++ I+A+ L+ YL ++FSL G P++LV
Sbjct: 238 TEKKKYEITEQGKANQKAVDSQILSEIKAIPQLQDYLRSQFSLTKGTYPYKLV 290
Score = 92 (37.4 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
PK SRNP L+RG+G++SRS MY ++ L+ K
Sbjct: 45 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 80
>UNIPROTKB|G4MSC0 [details] [associations]
symbol:MGG_04444 "60S ribosomal protein L6" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0043581
EMBL:CM001232 Gene3D:2.30.30.30 InterPro:IPR014722 KO:K02934
PANTHER:PTHR10715 RefSeq:XP_003713539.1 ProteinModelPortal:G4MSC0
EnsemblFungi:MGG_04444T0 GeneID:2677964 KEGG:mgr:MGG_04444
Uniprot:G4MSC0
Length = 202
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 82/172 (47%), Positives = 101/172 (58%)
Query: 64 FYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGP 123
+YPA D P ++ +P R S+ PGTV ILLAGRF GKRVV LK L G+LLVTGP
Sbjct: 29 WYPATDDNGPKAVRKSVRPWNPRKSLEPGTVLILLAGRFRGKRVVLLKNLDQGVLLVTGP 88
Query: 124 FKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDD----QYFXXXXXXXXXXXXXXXXXX 179
FK+NGVPLRRVN YVIATS KVD+SGVD GK D+ +YF
Sbjct: 89 FKINGVPLRRVNARYVIATSQKVDLSGVDTGKIDEVAAPKYFTAEKAKEKAGEEAFFKQG 148
Query: 180 XXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHEL 231
+ + DQK +D LI +I+ V L +YL+ FSL+ G KPHE+
Sbjct: 149 EKPEKKQVNSTRAADQKAIDKALIANIKKVEFLASYLATSFSLRKGDKPHEM 200
>UNIPROTKB|F1LUV7 [details] [associations]
symbol:F1LUV7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 IPI:IPI00359709
Ensembl:ENSRNOT00000033766 Uniprot:F1LUV7
Length = 286
Score = 225 (84.3 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 52/95 (54%), Positives = 65/95 (68%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP ++V K L R KP +LR+ I PGTV I++ GR GKR+VFLKQL SGLL
Sbjct: 121 YYPIEEVPKLL--SRGTKPFSQHLRRLRSHIAPGTVLIIVTGRQRGKRMVFLKQLGSGLL 178
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL 153
VTGP ++ VPLRR +Q +VIATSTKV IS V +
Sbjct: 179 FVTGPLALDRVPLRRTHQKFVIATSTKVGISEVKI 213
Score = 92 (37.4 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 187 LPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ + +K DQ+TVD Q++ + V L YL ++FSL + M PH+LVF
Sbjct: 241 ITEQRKADQETVDLQILPKSKDVAQLG-YLRSQFSLTNPMYPHKLVF 286
Score = 77 (32.2 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
P+ SR P L+RG+G++S S M+ K+ L+ K
Sbjct: 42 PRNGKSHCSRTPVLVRGIGRYSGSSMFSKKALYKRK 77
>POMBASE|SPCC622.18 [details] [associations]
symbol:rpl6 "60S ribosomal protein L6 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006412 "translation" evidence=ISO] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=ISO] InterPro:IPR000915 Pfam:PF01159
PROSITE:PS01170 PomBase:SPCC622.18 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0042254 GO:GO:0003735 GO:GO:0002181
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625 eggNOG:COG2163
HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715 OrthoDB:EOG4T4H4S
EMBL:AB001833 PIR:T41499 RefSeq:NP_588190.1
ProteinModelPortal:P79071 IntAct:P79071 STRING:P79071 PRIDE:P79071
EnsemblFungi:SPCC622.18.1 GeneID:2539372 KEGG:spo:SPCC622.18
OMA:RYSASIT NextBio:20800537 Uniprot:P79071
Length = 195
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 81/171 (47%), Positives = 106/171 (61%)
Query: 64 FYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGP 123
+YPA P ++ +PTKLRAS+ PGTV ILLAGRF GKRVV L QL L+VTGP
Sbjct: 27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED-TLVVTGP 85
Query: 124 FKVNGVPLRRVNQSYVIATST-KVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXX 182
+KVNGVP+RRVN YVIATS K+D+SGV + KF YF
Sbjct: 86 YKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQKRSGPVKKDEAFFAENAP 145
Query: 183 XXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
LP ++ DQK VDA+L+ +I+A+ ++K YL+A F+L +G +PH + F
Sbjct: 146 KNA-LPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195
>UNIPROTKB|F1M2R6 [details] [associations]
symbol:F1M2R6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 OMA:FNFENIA
IPI:IPI00776960 PRIDE:F1M2R6 Ensembl:ENSRNOT00000055040
Uniprot:F1M2R6
Length = 230
Score = 232 (86.7 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 54/92 (58%), Positives = 63/92 (68%)
Query: 65 YPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLL 119
YP DV + L++ + KP +LR SITPGTV I+L GR GKR+VFLKQL SGLL
Sbjct: 67 YPTKDVPRKLLSHGQ-KPFRQRVRRLRPSITPGTVLIILTGRHRGKRLVFLKQLGSGLLP 125
Query: 120 VTGPFKVNGVPLRRVNQSYVIATSTKVDISGV 151
VTGPF +N VPLRR Q V TST+VDIS V
Sbjct: 126 VTGPFALNRVPLRRTRQKSVTTTSTQVDISEV 157
Score = 102 (41.0 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 189 DDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ +K +QK VD Q++ I+AV L+ YL ++FS+ GM PH VF
Sbjct: 186 EKRKAEQKAVDPQILPKIKAVPQLQGYLRSQFSMTDGMYPHNPVF 230
Score = 50 (22.7 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 16 LIRGVGKFSRSKMYHKRGLWAIK 38
L+RG+G++S+S M+ ++ + K
Sbjct: 4 LLRGIGRYSQSAMHSRKASYKRK 26
>UNIPROTKB|F8W181 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000915 Pfam:PF01159
PROSITE:PS01170 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 PANTHER:PTHR10715
HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086 IPI:IPI01025005
ProteinModelPortal:F8W181 SMR:F8W181 Ensembl:ENST00000549923
ArrayExpress:F8W181 Bgee:F8W181 Uniprot:F8W181
Length = 226
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 81/174 (46%), Positives = 107/174 (61%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLL
Sbjct: 55 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLL 113
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXX 177
LVTGP +N VPLRR +Q +VIATSTK+DIS V + K D YF
Sbjct: 114 LVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIF 173
Query: 178 XXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHEL 231
+ + +K DQK VD+Q++ I+A+ L+ YL + F+L +G+ PH+L
Sbjct: 174 DTEKEKYEIT-EQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKL 226
>DICTYBASE|DDB_G0292460 [details] [associations]
symbol:rpl6 "60S ribosomal protein L6" species:44689
"Dictyostelium discoideum" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000915
Pfam:PF01159 PROSITE:PS01170 dictyBase:DDB_G0292460
GenomeReviews:CM000155_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000190 Gene3D:2.30.30.30 InterPro:IPR014722
eggNOG:COG2163 KO:K02934 OMA:VSGPFKV PANTHER:PTHR10715
RefSeq:XP_629633.1 ProteinModelPortal:Q54D63 STRING:Q54D63
EnsemblProtists:DDB0231338 GeneID:8628697 KEGG:ddi:DDB_G0292460
ProtClustDB:CLSZ2437031 Uniprot:Q54D63
Length = 236
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 77/169 (45%), Positives = 100/169 (59%)
Query: 66 PADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFK 125
PA+ ++ K + K LR SITPGTV I+LAGRF GKRVV LKQL SGL+L+TGPFK
Sbjct: 70 PAE-IRSTAAKKVQQK-VALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFK 127
Query: 126 VNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXX 184
VNGVPLRR++Q YVIATSTK+D+S V + +D YF
Sbjct: 128 VNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEK 187
Query: 185 XVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+ D + DQK+VD+ ++ ++ L YL +F LK G PH+L F
Sbjct: 188 KKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236
>WB|WBGene00004417 [details] [associations]
symbol:rpl-6 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170 GO:GO:0008340
GO:GO:0009792 GO:GO:0040007 GO:GO:0006915 GO:GO:0002119
GO:GO:0006412 GO:GO:0000003 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 EMBL:FO081317 eggNOG:COG2163
HOGENOM:HOG000207317 KO:K02934 OMA:VSGPFKV PANTHER:PTHR10715
GeneTree:ENSGT00390000003682 PIR:T16762 RefSeq:NP_498584.1
ProteinModelPortal:P47991 SMR:P47991 DIP:DIP-26565N IntAct:P47991
MINT:MINT-1063990 STRING:P47991 PaxDb:P47991 PRIDE:P47991
EnsemblMetazoa:R151.3.1 EnsemblMetazoa:R151.3.2
EnsemblMetazoa:R151.3.3 GeneID:176015 KEGG:cel:CELE_R151.3
UCSC:R151.3.1 CTD:176015 WormBase:R151.3 InParanoid:P47991
NextBio:890746 Uniprot:P47991
Length = 217
Score = 302 (111.4 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 71/158 (44%), Positives = 94/158 (59%)
Query: 81 KPTKLRASITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRRVNQSYV 139
K LR ++TPGTV I+LAGR GKRVVFLKQL SGLLLVTGP K+NG PLRR+ Q++V
Sbjct: 63 KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFV 122
Query: 140 IATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTV 198
IATS KV++SGV + + +D+YF + + +K D KTV
Sbjct: 123 IATSLKVNVSGVKIPEHINDEYFKRKSTAQKTGKNIFASGKTEYT---VSEQRKKDIKTV 179
Query: 199 DAQLIKSIEAVLDLKT---YLSARFSLKSGMKPHELVF 233
DA ++ +I+ + K YL RFSL PH++ F
Sbjct: 180 DAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
Score = 50 (22.7 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRG 33
SRN DL GV +FS S++ K+G
Sbjct: 11 SRNFDLSPGVLRFSASRLRLKKG 33
>UNIPROTKB|P47991 [details] [associations]
symbol:rpl-6 "60S ribosomal protein L6" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170
GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0006412 GO:GO:0000003 GO:GO:0005840
GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 EMBL:FO081317
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934 OMA:VSGPFKV
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 PIR:T16762
RefSeq:NP_498584.1 ProteinModelPortal:P47991 SMR:P47991
DIP:DIP-26565N IntAct:P47991 MINT:MINT-1063990 STRING:P47991
PaxDb:P47991 PRIDE:P47991 EnsemblMetazoa:R151.3.1
EnsemblMetazoa:R151.3.2 EnsemblMetazoa:R151.3.3 GeneID:176015
KEGG:cel:CELE_R151.3 UCSC:R151.3.1 CTD:176015 WormBase:R151.3
InParanoid:P47991 NextBio:890746 Uniprot:P47991
Length = 217
Score = 302 (111.4 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 71/158 (44%), Positives = 94/158 (59%)
Query: 81 KPTKLRASITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRRVNQSYV 139
K LR ++TPGTV I+LAGR GKRVVFLKQL SGLLLVTGP K+NG PLRR+ Q++V
Sbjct: 63 KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFV 122
Query: 140 IATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTV 198
IATS KV++SGV + + +D+YF + + +K D KTV
Sbjct: 123 IATSLKVNVSGVKIPEHINDEYFKRKSTAQKTGKNIFASGKTEYT---VSEQRKKDIKTV 179
Query: 199 DAQLIKSIEAVLDLKT---YLSARFSLKSGMKPHELVF 233
DA ++ +I+ + K YL RFSL PH++ F
Sbjct: 180 DAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
Score = 50 (22.7 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRG 33
SRN DL GV +FS S++ K+G
Sbjct: 11 SRNFDLSPGVLRFSASRLRLKKG 33
>FB|FBgn0039857 [details] [associations]
symbol:RpL6 "Ribosomal protein L6" species:7227 "Drosophila
melanogaster" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IDA] [GO:0005840
"ribosome" evidence=IDA] [GO:0005811 "lipid particle" evidence=IDA]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000022 "mitotic spindle elongation" evidence=IMP] [GO:0051297
"centrosome organization" evidence=IMP] [GO:0051298 "centrosome
duplication" evidence=IMP] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 EMBL:AE014297 GO:GO:0051298 GO:GO:0005811
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000022
Gene3D:2.30.30.30 InterPro:IPR014722 KO:K02934 PANTHER:PTHR10715
OMA:KYELTEQ GeneTree:ENSGT00390000003682 CTD:6128 ChiTaRS:RPL6
UniGene:Dm.6176 GeneID:43723 KEGG:dme:Dmel_CG11522
FlyBase:FBgn0039857 GenomeRNAi:43723 NextBio:835438 EMBL:AY070994
RefSeq:NP_651876.1 SMR:Q9V9W3 STRING:Q9V9W3
EnsemblMetazoa:FBtr0085805 InParanoid:Q9V9W3 Uniprot:Q9V9W3
Length = 262
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 93/254 (36%), Positives = 121/254 (47%)
Query: 1 MAPKAATGRTSR-NPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDX--------- 50
+A A G+ N L G+ ++S+++MY +R L+ +K K V K
Sbjct: 10 VAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIG 69
Query: 51 ----XXXXXXXXXXXXXFYPADD-VKK-PL-VNKRKHKPTKLRASITPGTVFILLAGRFM 103
YP VKK P N +HK R ++TPGTV ILLAGR
Sbjct: 70 GPKNGGERTVFLKKSKASYPTKTFVKKRPSKANFSEHK-RNTRRNLTPGTVLILLAGRHQ 128
Query: 104 GKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFX 162
GKRVV LK L SGLLLVTGPF +N PLRRV+Q YVI TS+KVD+ + + +D YF
Sbjct: 129 GKRVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFR 188
Query: 163 XXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLK---TYLSAR 219
V + +K DQK VDA L+K I+A + K YL
Sbjct: 189 RLKAKKDKKTGEADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNM 248
Query: 220 FSLKSGMKPHELVF 233
F+L S PH + F
Sbjct: 249 FALHSSQYPHRMRF 262
>RGD|1590802 [details] [associations]
symbol:LOC367276 "similar to 60S ribosomal protein L6
(TAX-responsive enhancer element binding protein 107) (TAXREB107)"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
RGD:1590802 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 PANTHER:PTHR10715
IPI:IPI00388628 Ensembl:ENSRNOT00000029667 Uniprot:F1LX93
Length = 260
Score = 206 (77.6 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 64/181 (35%), Positives = 88/181 (48%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK---AKNGGVFPKHDXXXXXXXXXX 59
P+ + S NP L+RG+G +SRS Y ++ L+ +K AK+ + +
Sbjct: 32 PRKGSPICSPNPVLVRGIGGYSRSARYSRKALYKMKYSTAKSKAEKERKEKVLATVTTVG 91
Query: 60 XXXX-------------FYPADDVKKPLVNKRKHKPT-----KLRASITPGTVFILLAGR 101
+YP DV + L++ + KP +LRAS TPG L
Sbjct: 92 GNKNGGTWVAKLRKMPWYYPTKDVLRELLSPGQ-KPLSQHVRRLRASATPG----LSRSS 146
Query: 102 FMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQY 160
+G FLKQL S LLL TGP +NGVPL R +Q + I TSTKV IS V + K +D Y
Sbjct: 147 SLGAHCFFLKQLDSSLLLETGPLALNGVPLLRTHQKFAITTSTKVVISNVKIPKHLNDAY 206
Query: 161 F 161
F
Sbjct: 207 F 207
Score = 104 (41.7 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 191 KKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
++ DQKT D+Q + I+AV L+ L ++FSL +GM+PH LVF
Sbjct: 218 RRADQKTQDSQFLPKIKAVPQLQGDLPSQFSLANGMQPHRLVF 260
>UNIPROTKB|J9NU22 [details] [associations]
symbol:J9NU22 "60S ribosomal protein L6" species:9615
"Canis lupus familiaris" [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30
InterPro:IPR014722 PANTHER:PTHR10715 GeneTree:ENSGT00390000003682
EMBL:AAEX03016718 Ensembl:ENSCAFT00000044534 Uniprot:J9NU22
Length = 264
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 89/251 (35%), Positives = 118/251 (47%)
Query: 3 PKAATGRTSRNPDLIRGVGKFS----RSKMY----------HKRGLWAIKAKNGGVFPKH 48
PK S+NP L+RG+G++S R Y K + A K G+ K
Sbjct: 21 PKKGKTHCSQNPVLVRGIGRYSWPCTRGSKYLAAKSRVEKEKKEKVLATVTKPVGLKKKK 80
Query: 49 DXXXXXXXXXXXXXXFYPADDVKKPLV---NKRKHKPTKLRASI--TPGTVFILLAGRFM 103
+YP +K L N KL+ASI TPGT+ I+L G
Sbjct: 81 KKRVVKLRKMPR---YYPRKVTRKLLSHGKNPFSQHVRKLQASISITPGTILIILTGHHR 137
Query: 104 GKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFX 162
GKR VFLKQ S LLLVTGP +N VPLRR +Q +VIATSTK+ IS V + K D YF
Sbjct: 138 GKREVFLKQRNSSLLLVTGPLALNRVPLRRTHQKFVIATSTKI-ISSVKIPKHLTDAYFK 196
Query: 163 XXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSL 222
+ + K DQK VD++++ I+ V L+ YL FS
Sbjct: 197 KKQLLKPRHQEGEIFDTKEKYK--ITEQHKVDQKAVDSKILPKIKVVPQLQGYLRCVFST 254
Query: 223 KSGMKPHELVF 233
+G+ PH+L+F
Sbjct: 255 -NGVFPHKLMF 264
>UNIPROTKB|F1M4J7 [details] [associations]
symbol:F1M4J7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 IPI:IPI00949300 Ensembl:ENSRNOT00000065817
Uniprot:F1M4J7
Length = 202
Score = 186 (70.5 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 50/103 (48%), Positives = 67/103 (65%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YPA+DV + L++ K KP +LR+SITP T ++ +G G RVVFLKQL SGLL
Sbjct: 92 YYPAEDVHRKLLSHGK-KPFSQHVRRLRSSITPLTGLVIPSGT-TGARVVFLKQLGSGLL 149
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYF 161
V GP +N VPL R ++ +VI+TS+KV IS V + K YF
Sbjct: 150 FV-GPLALNRVPLCRTHRKFVISTSSKV-ISEVKIPKHLTDYF 190
Score = 75 (31.5 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
S+NP +RGVG++SRS MY ++ L+ K
Sbjct: 22 SQNPVPVRGVGRYSRSAMYSRKALYKRK 49
>UNIPROTKB|F1M2L7 [details] [associations]
symbol:F1M2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 IPI:IPI00949670
Ensembl:ENSRNOT00000066666 Uniprot:F1M2L7
Length = 213
Score = 179 (68.1 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 48/97 (49%), Positives = 65/97 (67%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YPA+DV + L++ K KP +LR+SITP T ++ +G G RVVFLKQL SGLL
Sbjct: 115 YYPAEDVHRKLLSHGK-KPFSQHVRRLRSSITPLTGLVIPSGT-TGARVVFLKQLGSGLL 172
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK 155
V GP +N VPL R ++ +VI+TS+KV IS V + K
Sbjct: 173 FV-GPLALNRVPLCRTHRKFVISTSSKV-ISEVKIPK 207
Score = 75 (31.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
S+NP +RGVG++SRS MY ++ L+ K
Sbjct: 45 SQNPVPVRGVGRYSRSAMYSRKALYKRK 72
>GENEDB_PFALCIPARUM|PF13_0213 [details] [associations]
symbol:PF13_0213 "60S ribosomal subunit protein
L6e, putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR000915 Pfam:PF01159 GO:GO:0006412 GO:GO:0003735
EMBL:AL844509 Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625
InterPro:IPR005824 SMART:SM00739 HOGENOM:HOG000207317 KO:K02934
PANTHER:PTHR10715 ProtClustDB:CLSZ2437031 RefSeq:XP_001350109.1
ProteinModelPortal:Q8IDV1 IntAct:Q8IDV1 MINT:MINT-1560977
PRIDE:Q8IDV1 EnsemblProtists:PF13_0213:mRNA GeneID:814180
KEGG:pfa:PF13_0213 EuPathDB:PlasmoDB:PF3D7_1338200 OMA:FNFENIA
Uniprot:Q8IDV1
Length = 221
Score = 184 (69.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 38/90 (42%), Positives = 58/90 (64%)
Query: 72 KPLVNKRKHK-PTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVP 130
+ + +K+K+ KLR SI G V I+L G+ MGKR + K L SGLL V GP+++NGVP
Sbjct: 36 RKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVP 95
Query: 131 LRRVNQSYVIATSTKVDISGVDLGKFDDQY 160
L+RV+ Y++ TST + + ++ K D +
Sbjct: 96 LKRVDSRYLVVTSTNI-FNFENIAKLKDDF 124
Score = 42 (19.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 215 YLSARFSLKSGMKPHELVF 233
YL ++F+L++ M H++ F
Sbjct: 203 YLKSKFTLRNDMVLHKMKF 221
>UNIPROTKB|Q8IDV1 [details] [associations]
symbol:PF13_0213 "60S ribosomal protein L6-2, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISS] InterPro:IPR000915
Pfam:PF01159 GO:GO:0006412 GO:GO:0003735 EMBL:AL844509
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625
InterPro:IPR005824 SMART:SM00739 HOGENOM:HOG000207317 KO:K02934
PANTHER:PTHR10715 ProtClustDB:CLSZ2437031 RefSeq:XP_001350109.1
ProteinModelPortal:Q8IDV1 IntAct:Q8IDV1 MINT:MINT-1560977
PRIDE:Q8IDV1 EnsemblProtists:PF13_0213:mRNA GeneID:814180
KEGG:pfa:PF13_0213 EuPathDB:PlasmoDB:PF3D7_1338200 OMA:FNFENIA
Uniprot:Q8IDV1
Length = 221
Score = 184 (69.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 38/90 (42%), Positives = 58/90 (64%)
Query: 72 KPLVNKRKHK-PTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVP 130
+ + +K+K+ KLR SI G V I+L G+ MGKR + K L SGLL V GP+++NGVP
Sbjct: 36 RKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVP 95
Query: 131 LRRVNQSYVIATSTKVDISGVDLGKFDDQY 160
L+RV+ Y++ TST + + ++ K D +
Sbjct: 96 LKRVDSRYLVVTSTNI-FNFENIAKLKDDF 124
Score = 42 (19.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 215 YLSARFSLKSGMKPHELVF 233
YL ++F+L++ M H++ F
Sbjct: 203 YLKSKFTLRNDMVLHKMKF 221
>UNIPROTKB|J9P4W9 [details] [associations]
symbol:J9P4W9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000915
Pfam:PF01159 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 PANTHER:PTHR10715
GeneTree:ENSGT00390000003682 EMBL:AAEX03017370
Ensembl:ENSCAFT00000023446 OMA:EIFHTEE Uniprot:J9P4W9
Length = 240
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 50/103 (48%), Positives = 66/103 (64%)
Query: 65 YPADDVKKPLVNKRKHKPT------KLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+P++DV + L R K T KLRAS+TPGT+ I+ G GKRVVFLKQ ++GLL
Sbjct: 113 HPSEDVPQKL--SRNGKTTISQYVRKLRASLTPGTILIIFTGDHRGKRVVFLKQGSNGLL 170
Query: 119 LVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQY 160
VT ++ VPL R +Q +VIATSTK+D+S V + K D Y
Sbjct: 171 PVTRALTLSQVPLHRTHQ-FVIATSTKIDVSSVKIPKHLTDAY 212
>UNIPROTKB|F8VR69 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01021128 ProteinModelPortal:F8VR69 SMR:F8VR69
Ensembl:ENST00000550238 ArrayExpress:F8VR69 Bgee:F8VR69
Uniprot:F8VR69
Length = 64
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 38/62 (61%), Positives = 45/62 (72%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLL 118
+YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLL
Sbjct: 4 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLL 62
Query: 119 LV 120
LV
Sbjct: 63 LV 64
>UNIPROTKB|F8VZ45 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF03868 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01021267 ProteinModelPortal:F8VZ45 SMR:F8VZ45
Ensembl:ENST00000549847 ArrayExpress:F8VZ45 Bgee:F8VZ45
Uniprot:F8VZ45
Length = 159
Score = 99 (39.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 64 FYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMG 104
+YP +DV + L++ K KP KLRASITPGT+ I+L GR G
Sbjct: 115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRG 159
Score = 90 (36.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
PK SRNP L+RG+G++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
>UNIPROTKB|F8VRY1 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF03868 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01020969 ProteinModelPortal:F8VRY1 SMR:F8VRY1
Ensembl:ENST00000549006 ArrayExpress:F8VRY1 Bgee:F8VRY1
Uniprot:F8VRY1
Length = 72
Score = 90 (36.7 bits), Expect = 0.00047, P = 0.00047
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
PK SRNP L+RG+G++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
>UNIPROTKB|F8VWR1 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF03868 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01021434 Ensembl:ENST00000551291 Ensembl:ENST00000553213
Uniprot:F8VWR1
Length = 114
Score = 90 (36.7 bits), Expect = 0.00047, P = 0.00047
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
PK SRNP L+RG+G++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
>UNIPROTKB|F8VZA3 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF03868 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01021767 ProteinModelPortal:F8VZA3 PRIDE:F8VZA3
Ensembl:ENST00000548343 ArrayExpress:F8VZA3 Bgee:F8VZA3
Uniprot:F8VZA3
Length = 105
Score = 90 (36.7 bits), Expect = 0.00047, P = 0.00047
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 3 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIK 38
PK SRNP L+RG+G++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 233 195 0.00078 111 3 11 22 0.45 32
31 0.44 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 551 (59 KB)
Total size of DFA: 138 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.33u 0.14s 14.47t Elapsed: 00:00:01
Total cpu time: 14.34u 0.14s 14.48t Elapsed: 00:00:01
Start: Sat May 11 04:50:04 2013 End: Sat May 11 04:50:05 2013